Citrus Sinensis ID: 025275

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFSISCCD
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHccccccccEEEEcccccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccEEEEccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHcccccccccEEEEEccccccHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHccccccEEEEccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHccccccccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccEEccHHHccHHHHHHHHEccccc
Coil and Loop (DISEMBL)
mwlfsrkgpsgfsasstaeevtqgidgtgLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIpsakvdamELDVSSLASVRKFASeynsqgrplnilinnagimaspfmlskdnIELQFATNHLGHFLLTHLLLDTMKKTAqkssregrivnvsseahrfaysegirfdkindesaynsfgaygQSKLANILHAKELAKHLKedgvnitanslhpgsivtnlfryngilrgdffsisccd
Flexible Loop (DISEMBL)
mwlfsrkgpsgfsasSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRnmaagkdvREAIVKEipsakvdameLDVSSLASVRKFASeynsqgrplNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAqkssregrivnvsseahrfaysegirfdkiNDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNItanslhpgsivTNLFRYNGILRGDFFSISCCD
Low Complexity Region (SEG)
MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNhlghfllthlllDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFSISCCD
Disordered region (IsUnstruct)
***********************GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTM*************VNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFSISCC*
Disordered Region (DISOPRED)
MWLFS**GPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFSISCCD
Disordered Region (DISEMBL)
*********************TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKK**********IVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFSISCCD
Disordered Region (DISPRO)
*********************TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFSISCCD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFSISCCD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q6RVV4	316	Short-chain dehydrogenase	N/A	no	0.964	0.778	0.793	1e-113
A2RVM0	322	Short-chain dehydrogenase	no	no	0.941	0.745	0.775	1e-108
Q5F389	414	WW domain-containing oxid	yes	no	0.917	0.565	0.414	5e-44
Q9NZC7	414	WW domain-containing oxid	yes	no	0.866	0.533	0.427	1e-42
Q5R9W5	414	WW domain-containing oxid	yes	no	0.866	0.533	0.418	9e-42
Q91WL8	414	WW domain-containing oxid	yes	no	0.886	0.545	0.389	2e-41
O74959	339	Uncharacterized oxidoredu	yes	no	0.835	0.628	0.438	2e-36
Q8NBN7	331	Retinol dehydrogenase 13	no	no	0.811	0.625	0.444	2e-36
Q8TC12	318	Retinol dehydrogenase 11	no	no	0.870	0.698	0.409	3e-35
Q9HBH5	336	Retinol dehydrogenase 14	no	no	0.792	0.601	0.413	4e-35

>sp|Q6RVV4|TIC32_PEA Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/247 (79%), Positives = 221/247 (89%), Gaps = 1/247 (0%)

Query: 1   MWLFS-RKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMA 59
           MW FS +KG SGFS SSTAE+VT GID TGLTAIVTGASSGIG ET RVLALRG HVIM 
Sbjct: 1   MWPFSSKKGVSGFSGSSTAEQVTHGIDATGLTAIVTGASSGIGAETTRVLALRGAHVIMG 60

Query: 60  VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIM 119
           VRNM A KDV++ I+K+IPSAKVDA+ELD+SSL SV+KFASE+NS GRPLNILINNAGIM
Sbjct: 61  VRNMVAAKDVKDTILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRPLNILINNAGIM 120

Query: 120 ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE 179
           A PF LSKDNIELQFATNH+GHFLLT+LLLDTMKKT ++S +EGRIVNV+SEAHRFAY E
Sbjct: 121 ACPFKLSKDNIELQFATNHIGHFLLTNLLLDTMKKTTRESKKEGRIVNVASEAHRFAYPE 180

Query: 180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           GIRFDKIND+S+YN++ AYGQSKLAN+LHA +L KHLKEDGVNITANSLHPG+IVTNLFR
Sbjct: 181 GIRFDKINDQSSYNNWRAYGQSKLANVLHANQLTKHLKEDGVNITANSLHPGTIVTNLFR 240

Query: 240 YNGILRG 246
           +N  + G
Sbjct: 241 HNSAVNG 247

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. Has a NADPH-dependent dehydrogenase activity, but only after preincubation with lipids.
Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|A2RVM0|TIC32_ARATH Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/240 (77%), Positives = 210/240 (87%)

Query: 1   MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV 60
           MW F  KG SGFS+ STAEEVT G+DGTGLTAIVTGASSGIG ETARVL+LRGVHV+MAV
Sbjct: 1   MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASSGIGVETARVLSLRGVHVVMAV 60

Query: 61  RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA 120
           RN  +G  V+E IVK++P AK+D MELD+SS+ SVRKFASEY S G PLN+LINNAGIMA
Sbjct: 61  RNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMA 120

Query: 121 SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
            PFMLSKDNIELQFATNHLGHFLLT LLLDTMK T+++S REGRIVN+SSEAHRF+Y EG
Sbjct: 121 CPFMLSKDNIELQFATNHLGHFLLTKLLLDTMKSTSRESKREGRIVNLSSEAHRFSYPEG 180

Query: 181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
           +RFDKIND+S+Y+S  AYGQSKL N+LHA EL K LKEDGVNITANSLHPG+I+TNL RY
Sbjct: 181 VRFDKINDKSSYSSMRAYGQSKLCNVLHANELTKQLKEDGVNITANSLHPGAIMTNLGRY 240

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5F389|WWOX_CHICK WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2

 Score =  177 bits (450), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 102/246 (41%), Positives = 150/246 (60%), Gaps = 12/246 (4%)

Query: 12  FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVRE 71
           +  +STA E+ QG D +G   I+TGA+SGIG ETA+  AL G +VI+A RNM+ G D  +
Sbjct: 107 YDGNSTAMEILQGRDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQ 166

Query: 72  AIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIE 131
            I++E   AKV+AM LD++SL SV+ FA  + S+  PL+IL+ NA I  S + L++D +E
Sbjct: 167 RILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLE 226

Query: 132 LQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY----SEGIRFDKIN 187
             F  NHLGHF L  LL D +++     S   R+V VSSE+HRF      S  + F  ++
Sbjct: 227 STFQVNHLGHFYLVQLLEDILRR-----SSPARVVVVSSESHRFTEIKDSSGKLDFSLLS 281

Query: 188 -DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRG 246
             +  Y +  AY +SKL NIL + EL + L   GV  T+NS+HPG+++ +    N  +  
Sbjct: 282 PSKKEYWAMLAYNRSKLCNILFSNELNRRLSPHGV--TSNSVHPGNMIYSSIHRNWWVYT 339

Query: 247 DFFSIS 252
             F+++
Sbjct: 340 LLFTLA 345

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Inhibits Wnt signaling.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9NZC7|WWOX_HUMAN WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1

 Score =  173 bits (438), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/234 (42%), Positives = 147/234 (62%), Gaps = 13/234 (5%)

Query: 12  FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVRE 71
           +  S+TA E+ QG D TG   +VTGA+SGIG ETA+  AL G HVI+A RNMA   +   
Sbjct: 107 YDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVS 166

Query: 72  AIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIE 131
            I++E   AKV+AM LD++ L SV+ FA  + ++  PL++L+ NA   A P+ L+KD +E
Sbjct: 167 RILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLE 226

Query: 132 LQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA---YSEG-IRFDKIN 187
             F  NHLGHF L  LL D + ++A       R++ VSSE+HRF     S G + F +++
Sbjct: 227 TTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSESHRFTDINDSLGKLDFSRLS 281

Query: 188 D-ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV-TNLFR 239
             ++ Y +  AY +SKL NIL + EL + L   GV  T+N++HPG+++ +N+ R
Sbjct: 282 PTKNDYWAMLAYNRSKLCNILFSNELHRRLSPRGV--TSNAVHPGNMMYSNIHR 333

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. Required for normal bone development (By similarity). May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R9W5|WWOX_PONAB WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1

 Score =  170 bits (430), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 147/234 (62%), Gaps = 13/234 (5%)

Query: 12  FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVRE 71
           +  S+TA E+ QG D TG   +VTGA+SGIG ETA+  AL G HVI+A RNMA   +   
Sbjct: 107 YDGSTTALEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVS 166

Query: 72  AIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIE 131
            I++E   AKV+A+ LD++ L SV+ FA  + ++  PL++L+ NA   A P+ L+KD +E
Sbjct: 167 RILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLE 226

Query: 132 LQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA---YSEG-IRFDKIN 187
             F  NHLGHF L  LL D + ++A       R++ VSSE+HRF     S G + F +++
Sbjct: 227 TTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSESHRFTDINDSLGKLDFSRLS 281

Query: 188 D-ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV-TNLFR 239
             ++ Y +  AY +SKL N+L + EL + L   GV  T+N++HPG+++ +N+ R
Sbjct: 282 PTKNDYWAMLAYNRSKLCNVLFSNELHRRLSPRGV--TSNAVHPGNMMYSNIHR 333

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q91WL8|WWOX_MOUSE WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 144/254 (56%), Gaps = 28/254 (11%)

Query: 12  FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVRE 71
           +  S+TA E+ QG D TG   +VTGA+SGIG ETA+  AL G HVI+A RN++   +   
Sbjct: 107 YDGSTTAMEILQGRDFTGKVVLVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVS 166

Query: 72  AIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIE 131
            I++E   AKV+AM LD++ L SV+ FA  + ++   L++L+ NAG  A P+ L+KD +E
Sbjct: 167 RILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLE 226

Query: 132 LQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESA 191
             F  NHLGHF L  LL D + +     S   R++ VSSE+HRF          IND S 
Sbjct: 227 TTFQVNHLGHFYLVQLLQDVLCR-----SSPARVIVVSSESHRFT--------DINDSSG 273

Query: 192 -------------YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF 238
                        Y +  AY +SKL NIL + EL + L   GV  T+N++HPG+++ +  
Sbjct: 274 KLDLSRLSPPRSDYWAMLAYNRSKLCNILFSNELHRRLSPRGV--TSNAVHPGNMMYSAI 331

Query: 239 RYNGILRGDFFSIS 252
             N  +    F+++
Sbjct: 332 HRNSWVYKLLFTLA 345

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm (By similarity). May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O74959|YJCD_SCHPO Uncharacterized oxidoreductase C736.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC736.13 PE=3 SV=1

 Score =  152 bits (385), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/219 (43%), Positives = 132/219 (60%), Gaps = 6/219 (2%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM 85
           D TG  A+VTG+S GIG  TA  LA +G  V +A RN    + V + I  E+  +K+  +
Sbjct: 39  DLTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFL 98

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLT 145
            LD+    SV + A  + ++   L+IL+NNAGIM  PF L+KD  ELQ  TN+L H+L T
Sbjct: 99  RLDLLDFESVYQAAESFIAKEEKLHILVNNAGIMNPPFELTKDGYELQIQTNYLSHYLFT 158

Query: 146 HLLLDTMKKTAQKSSREG--RIVNVSSEAHRFAYSEGIRFDKIN-DESAYNSFGAYGQSK 202
            LLL T+++TA++  R G  RIV+V+S A+  A   GI F  +N       +F  YGQSK
Sbjct: 159 ELLLPTLRRTAEE-CRPGDVRIVHVASIAYLQAPYSGIYFPDLNLPHVLLGTFARYGQSK 217

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN 241
            A IL++  LAK L++ G  I + SLHPG I T L RY+
Sbjct: 218 YAQILYSIALAKRLEKYG--IYSVSLHPGVIRTELTRYS 254

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8NBN7|RDH13_HUMAN Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/227 (44%), Positives = 139/227 (61%), Gaps = 20/227 (8%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM----AAGKDVREAIVKEIPSAKVDA 84
           G T IVTGA++GIG +TA  LA RG ++I+A R+M    AA KD+R     E  +  V+A
Sbjct: 38  GKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIR----GETLNHHVNA 93

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLL 144
             LD++SL S+R+FA++   +   ++ILINNAG+M  P   ++D  E+QF  NHLGHFLL
Sbjct: 94  RHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLL 153

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES-AYNSFGAYGQSKL 203
           T      +     K+S   RI+N+SS AH   +   I FD +N ++  YN+  AY QSKL
Sbjct: 154 T-----NLLLDKLKASAPSRIINLSSLAHVAGH---IDFDDLNWQTRKYNTKAAYCQSKL 205

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFS 250
           A +L  KEL++ L+  GV  T N+LHPG   T L R+ GI  G  FS
Sbjct: 206 AIVLFTKELSRRLQGSGV--TVNALHPGVARTELGRHTGI-HGSTFS 249

Does not exhibit retinol dehydrogenase (RDH) activity in vitro.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8TC12|RDH11_HUMAN Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/232 (40%), Positives = 137/232 (59%), Gaps = 10/232 (4%)

Query: 21  VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA 80
            T  +   G   +VTGA++GIG ETA+ LA RG  V +A R++  G+ V + I     + 
Sbjct: 33  CTSTVQLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQ 92

Query: 81  KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLG 140
           +V   +LD+S   S+R FA  + ++ + L++LINNAG+M  P+  + D  E+    NHLG
Sbjct: 93  QVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLG 152

Query: 141 HFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ 200
           HFLLTHLLL+ +K++A       RIVNVSS AH       I F  +  E  YN+  AY  
Sbjct: 153 HFLLTHLLLEKLKESA-----PSRIVNVSSLAHHLGR---IHFHNLQGEKFYNAGLAYCH 204

Query: 201 SKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFSIS 252
           SKLANIL  +ELA+ LK  GV  T  S+HPG++ + L R++  +R  ++  S
Sbjct: 205 SKLANILFTQELARRLKGSGV--TTYSVHPGTVQSELVRHSSFMRWMWWLFS 254

Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity towards 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: 0

>sp|Q9HBH5|RDH14_HUMAN Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1

 Score =  148 bits (373), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/225 (41%), Positives = 127/225 (56%), Gaps = 23/225 (10%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-------PSAK 81
           G T ++TGA+SG+G  TA  L   G  VIM  R+ A  ++    + +E+       P   
Sbjct: 43  GKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPG 102

Query: 82  VDAM------ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFA 135
           V  +      ELD++SL SVR F  E   +   L++LINNAGI   P+M ++D  E+QF 
Sbjct: 103 VSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFG 162

Query: 136 TNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF 195
            NHLGHFLLT      +     KSS   RIV VSS+ +++     I FD +N E +YN  
Sbjct: 163 VNHLGHFLLT-----NLLLGLLKSSAPSRIVVVSSKLYKYG---DINFDDLNSEQSYNKS 214

Query: 196 GAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
             Y +SKLANIL  +ELA+ L  +G N+T N LHPG + TNL R+
Sbjct: 215 FCYSRSKLANILFTRELARRL--EGTNVTVNVLHPGIVRTNLGRH 257

Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. No steroid dehydrogenase activity detected.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
225464515	313	PREDICTED: short-chain dehydrogenase TIC	0.964	0.785	0.833	1e-117
388510126	313	unknown [Lotus japonicus]	0.964	0.785	0.825	1e-116
363814467	313	uncharacterized protein LOC100796920 [Gl	0.964	0.785	0.796	1e-111
75291901	316	RecName: Full=Short-chain dehydrogenase	0.964	0.778	0.793	1e-111
225426446	315	PREDICTED: short-chain dehydrogenase TIC	0.964	0.780	0.796	1e-110
359490488	313	PREDICTED: short-chain dehydrogenase TIC	0.976	0.795	0.772	1e-110
358248796	349	uncharacterized protein LOC100783465 [Gl	0.941	0.687	0.8	1e-109
388515729	278	unknown [Medicago truncatula]	0.964	0.884	0.784	1e-109
359490491	313	PREDICTED: short-chain dehydrogenase TIC	0.960	0.782	0.796	1e-109
42567066	316	Rossmann-fold NAD(P)-binding domain-cont	0.964	0.778	0.777	1e-108

>gi|225464515|ref|XP_002270104.1| PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Vitis vinifera] gi|302143828|emb|CBI22689.3| unnamed protein product [Vitis vinifera]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/246 (83%), Positives = 226/246 (91%)

Query: 1   MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV 60
           MW FSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTET RVLALRGVHV+M V
Sbjct: 1   MWWFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVVMGV 60

Query: 61  RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA 120
           RNM+AGK+V+EAIVKEIP+AKVDAMELD+SS+ASVRKFASEYNS G PLNILINNAGIMA
Sbjct: 61  RNMSAGKEVKEAIVKEIPTAKVDAMELDLSSMASVRKFASEYNSSGLPLNILINNAGIMA 120

Query: 121 SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
            P+MLSKDNIE+QFATNHLGHFLLT+LLLDTMKKT +KS +EGRIVNVSS AHR+ Y EG
Sbjct: 121 VPYMLSKDNIEMQFATNHLGHFLLTNLLLDTMKKTTRKSRKEGRIVNVSSMAHRYPYREG 180

Query: 181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
           IRFDKIND+S Y+S  AYGQSKLAN+LHA ELA+  KEDGV+ITANSLHPG+IVTNLFR 
Sbjct: 181 IRFDKINDKSGYSSLFAYGQSKLANVLHANELARRFKEDGVDITANSLHPGAIVTNLFRC 240

Query: 241 NGILRG 246
           + I+ G
Sbjct: 241 SSIVSG 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510126|gb|AFK43129.1| unknown [Lotus japonicus]

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/246 (82%), Positives = 224/246 (91%)

Query: 1   MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV 60
           MW FS+KGPSGFS+SSTAE+VTQGIDGTGLTA+VTGASSGIGTET RVLA RGVHVIM V
Sbjct: 1   MWPFSKKGPSGFSSSSTAEQVTQGIDGTGLTAVVTGASSGIGTETTRVLAKRGVHVIMGV 60

Query: 61  RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA 120
           RN AAGKDV+E I+KE PSAKVDAMELD+SS+ SV+KFASEY S G PLNILINNAGIMA
Sbjct: 61  RNTAAGKDVKETILKENPSAKVDAMELDLSSMESVKKFASEYKSSGLPLNILINNAGIMA 120

Query: 121 SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
            PFMLSKDN ELQFATNHLGHFLLT+LLLDTMKKT+++S +EGRIV VSSEAHRFAYSEG
Sbjct: 121 CPFMLSKDNHELQFATNHLGHFLLTNLLLDTMKKTSRESKKEGRIVIVSSEAHRFAYSEG 180

Query: 181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
           IRFDKIND+S+YN++ AYGQSKLANILHA EL KHLKEDGV+ITANSLHPG+I TNLFRY
Sbjct: 181 IRFDKINDQSSYNNWRAYGQSKLANILHANELTKHLKEDGVDITANSLHPGTITTNLFRY 240

Query: 241 NGILRG 246
           N  + G
Sbjct: 241 NSAVNG 246

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814467|ref|NP_001242868.1| uncharacterized protein LOC100796920 [Glycine max] gi|255638702|gb|ACU19656.1| unknown [Glycine max]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/246 (79%), Positives = 221/246 (89%)

Query: 1   MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV 60
           MWLF RKG SGFS+SSTAE+VT+GIDGTG TAIVTGASSGIGTET RVLALRGVHVIM V
Sbjct: 1   MWLFGRKGASGFSSSSTAEQVTEGIDGTGFTAIVTGASSGIGTETTRVLALRGVHVIMGV 60

Query: 61  RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA 120
           RNM A KDV+E I+KEIPSAKVDAMELD+SS+ SVRKFASE+ S G PLNILINNAGIMA
Sbjct: 61  RNMLAAKDVKETILKEIPSAKVDAMELDLSSMKSVRKFASEFKSSGLPLNILINNAGIMA 120

Query: 121 SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
            PF LSKD IELQFATNH+GHFLLT+LLLDT+KKT+++S +EGRIVNVSSEAHRFAYSEG
Sbjct: 121 CPFSLSKDKIELQFATNHIGHFLLTNLLLDTIKKTSRESKKEGRIVNVSSEAHRFAYSEG 180

Query: 181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
           I FDKINDES+Y+++ AYGQSKLANILHA EL + LKEDGV+I+ANSLHPG+I TNLFR+
Sbjct: 181 ICFDKINDESSYDNWRAYGQSKLANILHANELTRRLKEDGVDISANSLHPGTITTNLFRH 240

Query: 241 NGILRG 246
           N  + G
Sbjct: 241 NSAVNG 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75291901|sp|Q6RVV4.1|TIC32_PEA RecName: Full=Short-chain dehydrogenase TIC 32, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 32; Short=PsTIC32 gi|42725482|gb|AAS38575.1| short-chain dehydrogenase Tic32 [Pisum sativum]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/247 (79%), Positives = 221/247 (89%), Gaps = 1/247 (0%)

Query: 1   MWLFS-RKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMA 59
           MW FS +KG SGFS SSTAE+VT GID TGLTAIVTGASSGIG ET RVLALRG HVIM 
Sbjct: 1   MWPFSSKKGVSGFSGSSTAEQVTHGIDATGLTAIVTGASSGIGAETTRVLALRGAHVIMG 60

Query: 60  VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIM 119
           VRNM A KDV++ I+K+IPSAKVDA+ELD+SSL SV+KFASE+NS GRPLNILINNAGIM
Sbjct: 61  VRNMVAAKDVKDTILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRPLNILINNAGIM 120

Query: 120 ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE 179
           A PF LSKDNIELQFATNH+GHFLLT+LLLDTMKKT ++S +EGRIVNV+SEAHRFAY E
Sbjct: 121 ACPFKLSKDNIELQFATNHIGHFLLTNLLLDTMKKTTRESKKEGRIVNVASEAHRFAYPE 180

Query: 180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           GIRFDKIND+S+YN++ AYGQSKLAN+LHA +L KHLKEDGVNITANSLHPG+IVTNLFR
Sbjct: 181 GIRFDKINDQSSYNNWRAYGQSKLANVLHANQLTKHLKEDGVNITANSLHPGTIVTNLFR 240

Query: 240 YNGILRG 246
           +N  + G
Sbjct: 241 HNSAVNG 247

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426446|ref|XP_002274932.1| PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic isoform 1 [Vitis vinifera] gi|297742509|emb|CBI34658.3| unnamed protein product [Vitis vinifera]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/246 (79%), Positives = 218/246 (88%)

Query: 1   MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV 60
           MW+F RKGPSGFSA STAEEV QGIDG GLTA+VTGASSGIGTET+RVLAL GVHVIMAV
Sbjct: 1   MWIFGRKGPSGFSACSTAEEVAQGIDGNGLTAVVTGASSGIGTETSRVLALHGVHVIMAV 60

Query: 61  RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA 120
           RN+ AG++V+E I+KEIP+AKVD MELD+SSL SVRKFASEY S G PLN+LINNAG+MA
Sbjct: 61  RNVDAGRNVKETILKEIPTAKVDVMELDLSSLPSVRKFASEYKSLGLPLNLLINNAGVMA 120

Query: 121 SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
           +PF+LS DNIELQFATNHLGHFLLT+LLL+TMK TA++S REGRIVNVSSE HRF YSEG
Sbjct: 121 TPFLLSHDNIELQFATNHLGHFLLTNLLLETMKNTARESGREGRIVNVSSEGHRFPYSEG 180

Query: 181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
           I FDKINDESAYNS  AYGQSKLANILHA ELAK L+E+GV ITANSLHPG+I TNL RY
Sbjct: 181 ICFDKINDESAYNSVYAYGQSKLANILHANELAKRLQEEGVEITANSLHPGAIATNLLRY 240

Query: 241 NGILRG 246
           +  L G
Sbjct: 241 HSFLDG 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490488|ref|XP_002272242.2| PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Vitis vinifera] gi|147792549|emb|CAN65620.1| hypothetical protein VITISV_040852 [Vitis vinifera] gi|302143827|emb|CBI22688.3| unnamed protein product [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/251 (77%), Positives = 224/251 (89%), Gaps = 2/251 (0%)

Query: 1   MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV 60
           MW F R G SGFSASSTA EVT GIDGTGLTAIVTGASSGIGTETARVLALRGVHV+MAV
Sbjct: 1   MWWFGRNGASGFSASSTAVEVTHGIDGTGLTAIVTGASSGIGTETARVLALRGVHVVMAV 60

Query: 61  RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA 120
           RNMAAG++V+EAI KEIP+AK+DAMELD+SS+ASVRKFASE++S G PLN+LINNAG+MA
Sbjct: 61  RNMAAGREVKEAIAKEIPTAKIDAMELDLSSMASVRKFASEFSSSGLPLNLLINNAGLMA 120

Query: 121 SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
           +PFMLSKDNIELQFATNH+GHFLLT+LLL+TMKKTA++S++EGRIVNVSS  HRF+Y EG
Sbjct: 121 TPFMLSKDNIELQFATNHIGHFLLTNLLLETMKKTARESNKEGRIVNVSSRRHRFSYHEG 180

Query: 181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
           IRFD IND+S YN   AYGQSKLAN+LHA EL++ LK+DG NITANSLHPG+I TNLFR+
Sbjct: 181 IRFDMINDQSGYNRLSAYGQSKLANVLHANELSRRLKDDGANITANSLHPGAIATNLFRH 240

Query: 241 NGILRG--DFF 249
             ++ G  D F
Sbjct: 241 VPLVGGFIDIF 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248796|ref|NP_001240197.1| uncharacterized protein LOC100783465 [Glycine max] gi|255644813|gb|ACU22908.1| unknown [Glycine max]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/240 (80%), Positives = 217/240 (90%)

Query: 1   MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV 60
           MW FSRKG SGFS+SSTAE+VT+GIDGTGLTAIVTGASSGIGTET RVL+LRGVHVIM V
Sbjct: 37  MWPFSRKGASGFSSSSTAEQVTEGIDGTGLTAIVTGASSGIGTETTRVLSLRGVHVIMGV 96

Query: 61  RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA 120
           RNM A KDV+E ++KEIPSAKVDAMELD+SSL SV+KFASE+ S G PLN+LINNAGIMA
Sbjct: 97  RNMLAAKDVKETLLKEIPSAKVDAMELDLSSLESVKKFASEFKSSGLPLNMLINNAGIMA 156

Query: 121 SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
            PF LSKD IELQFATNHLGHFLLT+LLLDTMKKT++++ +EGRIVNVSSEAHRF YSEG
Sbjct: 157 CPFKLSKDKIELQFATNHLGHFLLTNLLLDTMKKTSRETKKEGRIVNVSSEAHRFTYSEG 216

Query: 181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
           IRFDKINDES+Y+++ AYGQSKLANILHA EL + LKEDGV+I+ANSLHPG I TNL R+
Sbjct: 217 IRFDKINDESSYSNWRAYGQSKLANILHANELTRRLKEDGVDISANSLHPGVIATNLSRH 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515729|gb|AFK45926.1| unknown [Medicago truncatula]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/246 (78%), Positives = 213/246 (86%)

Query: 1   MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV 60
           MW FSRKG SGFS  STAEEVT GID TGLTAIVTGASSGIGTET RVLAL GVHVIMAV
Sbjct: 1   MWPFSRKGVSGFSWKSTAEEVTHGIDATGLTAIVTGASSGIGTETTRVLALHGVHVIMAV 60

Query: 61  RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA 120
           RN     + REAI+KEIPSAK+D MELD+SSL SV+KFASE+NS G PLNILINNAG+MA
Sbjct: 61  RNKVNANNTREAILKEIPSAKIDVMELDLSSLESVKKFASEFNSSGLPLNILINNAGVMA 120

Query: 121 SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
            PFMLS DNIELQFATNHLGHFLLT+LLLDTMKKTA +S  EGRIVNVSSEAH+FAYSEG
Sbjct: 121 CPFMLSNDNIELQFATNHLGHFLLTNLLLDTMKKTASESKTEGRIVNVSSEAHKFAYSEG 180

Query: 181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
           IRFDKIN++S+Y+ +GAYGQSKLANILHA +L KH K+DGVNI ANSLHPG I TNL+R+
Sbjct: 181 IRFDKINEQSSYSKWGAYGQSKLANILHANQLTKHFKDDGVNIIANSLHPGGIATNLYRH 240

Query: 241 NGILRG 246
           N  + G
Sbjct: 241 NSAING 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490491|ref|XP_003634099.1| PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Vitis vinifera] gi|302143829|emb|CBI22690.3| unnamed protein product [Vitis vinifera]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/246 (79%), Positives = 217/246 (88%), Gaps = 1/246 (0%)

Query: 1   MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV 60
           MWLFSRKG SGFS SSTAEEVTQGIDGTGLTAIVTGASSGIGTET RVLALRGVHV+M V
Sbjct: 1   MWLFSRKGASGFSGSSTAEEVTQGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVVMGV 60

Query: 61  RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA 120
           RNMAAG++V+EAIVKEIP+AKVD MELD+SS+ASVRKFASE+NS G PLNILINNAG   
Sbjct: 61  RNMAAGQEVKEAIVKEIPTAKVDVMELDLSSMASVRKFASEFNSSGLPLNILINNAGTTG 120

Query: 121 SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
            P+MLSKDNIE+ FATNHLGHFLLT LLLDTMKKT Q+S +EGRIV VSSE HRF Y  G
Sbjct: 121 -PYMLSKDNIEMLFATNHLGHFLLTSLLLDTMKKTTQESGKEGRIVIVSSEGHRFTYRGG 179

Query: 181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
           IRFD IND+S Y+S  AYGQSKLAN+LHA ELA+  KEDGV+ITANSLHPG+IVTN+FR+
Sbjct: 180 IRFDNINDKSGYSSPFAYGQSKLANVLHANELARRFKEDGVDITANSLHPGAIVTNIFRH 239

Query: 241 NGILRG 246
           + IL G
Sbjct: 240 SSILSG 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567066|ref|NP_194073.2| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|42572999|ref|NP_974596.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|23297050|gb|AAN13078.1| unknown protein [Arabidopsis thaliana] gi|51970714|dbj|BAD44049.1| unknown protein [Arabidopsis thaliana] gi|332659350|gb|AEE84750.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|332659351|gb|AEE84751.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/247 (77%), Positives = 214/247 (86%), Gaps = 1/247 (0%)

Query: 1   MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV 60
           MW F  KG SGFS+ STAEEVT G+DGTGLTAIVTGASSGIG ETARVLALRGVHV+MAV
Sbjct: 1   MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASSGIGVETARVLALRGVHVVMAV 60

Query: 61  RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA 120
           RN  AG  V+E IVK++P AKVD MEL++SS+ SVRKFASEY S G PLN+LINNAGIMA
Sbjct: 61  RNTGAGAKVKEDIVKQVPGAKVDVMELELSSMESVRKFASEYKSAGLPLNLLINNAGIMA 120

Query: 121 SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
            PFMLSKDNIELQFATNHLGHFLLT LLLDTMK T+++S REGRIVNVSSEAHR++Y EG
Sbjct: 121 CPFMLSKDNIELQFATNHLGHFLLTKLLLDTMKNTSRESKREGRIVNVSSEAHRYSYPEG 180

Query: 181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
           +RFDKINDES+Y+S  AYGQSKL N+LHA ELAK LKEDGVNITANSLHPG+I+TNL+ Y
Sbjct: 181 VRFDKINDESSYSSIRAYGQSKLCNVLHANELAKQLKEDGVNITANSLHPGAIMTNLWGY 240

Query: 241 -NGILRG 246
            N  L G
Sbjct: 241 FNSYLAG 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2117969	322	Tic32-IVa "translocon at the i	0.941	0.745	0.729	1.4e-89
TAIR|locus:2123066	317	AT4G11410 [Arabidopsis thalian	0.956	0.769	0.709	6.9e-86
TAIR|locus:2181778	331	AT5G02540 [Arabidopsis thalian	0.960	0.740	0.554	1.7e-68
TAIR|locus:2040676	321	AT2G37540 [Arabidopsis thalian	0.929	0.738	0.548	2e-65
TAIR|locus:2170071	339	AT5G50130 [Arabidopsis thalian	0.960	0.722	0.469	1.5e-51
TAIR|locus:2134971	332	AT4G24050 [Arabidopsis thalian	0.952	0.731	0.430	3.7e-48
TAIR|locus:2019474	334	AT1G64590 [Arabidopsis thalian	0.929	0.709	0.426	9.1e-45
FB|FBgn0033204	300	CG2065 [Drosophila melanogaste	0.858	0.73	0.419	5.5e-38
UNIPROTKB|E1C8R5	390	WWOX "WW domain-containing oxi	0.874	0.571	0.4	3.5e-36
UNIPROTKB|F1NXW7	414	WWOX "WW domain-containing oxi	0.874	0.538	0.4	3.5e-36

TAIR|locus:2117969 Tic32-IVa "translocon at the inner envelope membrane of chloroplasts 32-IVa" [Arabidopsis thaliana (taxid:3702)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 175/240 (72%), Positives = 199/240 (82%)

Query:     1 MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV 60
             MW F  KG SGFS+ STAEEVT G+DGTGLTAIVTGASSGIG ETARVL+LRGVHV+MAV
Sbjct:     1 MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASSGIGVETARVLSLRGVHVVMAV 60

Query:    61 RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA 120
             RN  +G  V+E IVK++P AK+D MELD+SS+ SVRKFASEY S G PLN+LINNAGIMA
Sbjct:    61 RNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMA 120

Query:   121 SPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
              PFMLSKDNIELQFATN            DTMK T+++S REGRIVN+SSEAHRF+Y EG
Sbjct:   121 CPFMLSKDNIELQFATNHLGHFLLTKLLLDTMKSTSRESKREGRIVNLSSEAHRFSYPEG 180

Query:   181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
             +RFDKIND+S+Y+S  AYGQSKL N+LHA EL K LKEDGVNITANSLHPG+I+TNL RY
Sbjct:   181 VRFDKINDKSSYSSMRAYGQSKLCNVLHANELTKQLKEDGVNITANSLHPGAIMTNLGRY 240

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2123066 AT4G11410 [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 173/244 (70%), Positives = 194/244 (79%)

Query:     1 MWLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV 60
             MW F  KG SGFSA STAEEVT GIDGTGLTAIVTGASSGIG ET RVLALRGVHV+MAV
Sbjct:     1 MWPFWWKGASGFSARSTAEEVTHGIDGTGLTAIVTGASSGIGEETTRVLALRGVHVVMAV 60

Query:    61 RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA 120
             RN  +G  VR+ I+KEIP AK+D M+LD+SS+ASVR FASEY S   PLN+LINNAGIMA
Sbjct:    61 RNTDSGNQVRDKILKEIPQAKIDVMKLDLSSMASVRSFASEYQSLDLPLNLLINNAGIMA 120

Query:   121 SPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
              PF+LS DNIELQFATN            + MKKTA +S+REGRIV VSSE HRFAY EG
Sbjct:   121 CPFLLSSDNIELQFATNHLGHFLLTNLLLERMKKTASESNREGRIVIVSSEGHRFAYREG 180

Query:   181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
             ++FDKINDE+ YN+  AYGQSKL NILHA ELA+  KE GVNITANSLHPGSI+TNL RY
Sbjct:   181 VQFDKINDEARYNTLQAYGQSKLGNILHATELARLFKEQGVNITANSLHPGSIMTNLLRY 240

Query:   241 NGIL 244
             +  +
Sbjct:   241 HSFI 244

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TAIR|locus:2181778 AT5G02540 [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 137/247 (55%), Positives = 181/247 (73%)

Query:     6 RKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA 65
             R+GPSGF ++STAEEVTQGID T LTAI+TG + GIG ETARVL+ RG HV++  RNM A
Sbjct:    10 RRGPSGFGSASTAEEVTQGIDATNLTAIITGGTGGIGMETARVLSKRGAHVVIGARNMGA 69

Query:    66 GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML 125
              ++ +  I+++  +A+V  ++LD+SS+ S++ F  E+++   PLN+LINNAG+M  P+ L
Sbjct:    70 AENAKTEILRQNANARVTLLQLDLSSIKSIKAFVREFHALHLPLNLLINNAGVMFCPYQL 129

Query:   126 SKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK 185
             S+D IELQFATN            DTMK TA+ S  EGRI+NVSS AH + Y EGI+FD 
Sbjct:   130 SEDGIELQFATNHIGHFLLTNLLLDTMKNTAKTSGVEGRILNVSSVAHIYTYQEGIQFDS 189

Query:   186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILR 245
             IND  +Y+   AYGQSKLANILHA EL++ L+E+GVNITANS+HPG I+TNLF++  +L 
Sbjct:   190 INDICSYSDKRAYGQSKLANILHANELSRQLQEEGVNITANSVHPGLILTNLFQHTALLM 249

Query:   246 G--DFFS 250
                 FFS
Sbjct:   250 RFLKFFS 256

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TAIR|locus:2040676 AT2G37540 [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 130/237 (54%), Positives = 173/237 (72%)

Query:     6 RKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA 65
             +KG SGF ++STAE+VTQ ID + LTAI+TG +SGIG E ARVLA+RG HVI+A RN  A
Sbjct:    10 KKGKSGFGSASTAEDVTQAIDASHLTAIITGGTSGIGLEAARVLAMRGAHVIIAARNPKA 69

Query:    66 GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML 125
               + +E I++  P+A+VD +++DVSS+ SVR F  ++ +   PLNILINNAG+M  PF L
Sbjct:    70 ANESKEMILQMNPNARVDYLQIDVSSIKSVRSFVDQFLALNVPLNILINNAGVMFCPFKL 129

Query:   126 SKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK 185
             ++D IE QFATN            D MK TA++S  +GRIVN+SS AH + YSEGI+F  
Sbjct:   130 TEDGIESQFATNHIGHFLLTNLLLDKMKSTARESGVQGRIVNLSSIAHTYTYSEGIKFQG 189

Query:   186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG 242
             IND + Y+   AYGQSKL+N+LH+  L++ L+E+GVNIT NS+HPG + TNLFRY+G
Sbjct:   190 INDPAGYSERRAYGQSKLSNLLHSNALSRRLQEEGVNITINSVHPGLVTTNLFRYSG 246

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IEP

TAIR|locus:2170071 AT5G50130 [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 117/249 (46%), Positives = 158/249 (63%)

Query:     8 GPSGFSASSTAEEVTQG--IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA 65
             GP+GF + STAE+VTQ      + LTAI+TG +SGIG ETARVLA RGV V+MAVR+M  
Sbjct:    13 GPNGFGSRSTAEQVTQHSFFPCSHLTAIITGGTSGIGAETARVLAKRGVRVVMAVRDMKK 72

Query:    66 GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML 125
              + V+E I++E P A +   E+D+SSL+SV +F S++ SQ  PLNILINNAG+ +     
Sbjct:    73 AEMVKERIIRENPEADIILFEIDLSSLSSVARFCSQFLSQDLPLNILINNAGVFSPNLEF 132

Query:   126 SKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK 185
             S++ IEL FATN            + M  TA+KS  EGRI+N+SS  H +   +   F K
Sbjct:   133 SEEKIELTFATNFLGHYLLTEMLIEKMIDTAEKSGIEGRIINLSSVIHNWVKPDCFSFPK 192

Query:   186 I-NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR-YNGI 243
             + +  S YN   AY QSKLA ILHAK L+K LK+   N+T N++HPG + T + R + G+
Sbjct:   193 LLHPISRYNGTRAYAQSKLATILHAKALSKQLKDRNANVTINAVHPGIVKTGIIRAHKGL 252

Query:   244 LRGDFFSIS 252
                  F I+
Sbjct:   253 FTDSLFLIA 261

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TAIR|locus:2134971 AT4G24050 [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 106/246 (43%), Positives = 155/246 (63%)

Query:     2 WLFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR 61
             +L    G SGF + STAEEVT+  D   +TA++TGA+SGIG ETARVLA RG  +I   R
Sbjct:     7 YLLGAAGASGFGSKSTAEEVTENCDLRSITAVITGATSGIGAETARVLAKRGARLIFPAR 66

Query:    62 NMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMAS 121
             N+ A ++ +E IV E P  ++  M+LD+SS+ASVR F +++ S   PLN+LINNAG +A 
Sbjct:    67 NVKAAEEAKERIVSEFPETEIVVMKLDLSSIASVRNFVADFESLDLPLNLLINNAGKLAH 126

Query:   122 PFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI 181
                +S+D IE+ FATN            + M +TA+++  +GRIVNV+S  H +   + I
Sbjct:   127 EHAISEDGIEMTFATNYLGHFLLTNLLLNKMIQTAEETGVQGRIVNVTSGIHGWFSGDLI 186

Query:   182 RFDKI--NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
              + ++    +  +++  AY  SKLAN+LH KEL+  L++ G N+T N +HPG + T L R
Sbjct:   187 EYLRLISQPKCQFDATRAYALSKLANVLHTKELSSRLQKIGANVTVNCVHPGVVRTRLTR 246

Query:   240 -YNGIL 244
                G+L
Sbjct:   247 DREGLL 252

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TAIR|locus:2019474 AT1G64590 [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 102/239 (42%), Positives = 144/239 (60%)

Query:     3 LFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN 62
             L    GPSGF + STA+ VT   D   LTAI+TGA+SGIG ETARVLA RG  +++  R+
Sbjct:     8 LIGSGGPSGFGSRSTADHVTCNSDLRSLTAIITGATSGIGAETARVLAKRGARLVLPARS 67

Query:    63 MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASP 122
             +   ++ +  I+ E P A++  M LD+SSL SVR+F  ++ S   PLNILINNAG  A  
Sbjct:    68 VKTAEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESLNLPLNILINNAGKYAHK 127

Query:   123 FMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR 182
               LS+D +E+ FATN              M +TA ++  +GRIVNV+S  H +   + ++
Sbjct:   128 HALSEDGVEMTFATNYLGHFLLTKLLLKKMIETAAQTGVQGRIVNVTSVVHSWFSGDMLQ 187

Query:   183 F--DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             +  D   +   Y++  AY  SKLAN+LH  EL++ L +   N+TAN +HPG + T L R
Sbjct:   188 YLADISRNNRNYDATRAYALSKLANVLHTVELSRLLHKMDANVTANCVHPGIVKTRLTR 246

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

FB|FBgn0033204 CG2065 [Drosophila melanogaster (taxid:7227)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 96/229 (41%), Positives = 132/229 (57%)

Query:    20 EVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPS 79
             + T+  D TG   IVTGA++GIG ET   +A RG  V MA R+M   +  R+ I++E  +
Sbjct:     5 QFTKQTDETGKVFIVTGANTGIGKETVLEIAKRGGTVYMACRDMNRCEKARQDIIRETNN 64

Query:    80 AKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXX 139
               + + ELD+SSL S+RKFA+ +  +   L++LINNAG+M  P  L+KD  E+Q   N  
Sbjct:    65 QNIFSRELDLSSLESIRKFAAGFKKEQDKLHVLINNAGVMHCPRTLTKDGFEMQLGVNHM 124

Query:   140 XXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
                       D +KKTA       RIVNVSS  H   +   I+   +N E +Y+  GAY 
Sbjct:   125 GHFLLTHLLLDVLKKTAPS-----RIVNVSSLVHTQGF---IKTADLNSEKSYSRIGAYS 176

Query:   200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDF 248
             QSKLAN+L  +ELAK L  +G  +T NSLHPG++ T L R    L+  F
Sbjct:   177 QSKLANVLFTRELAKRL--EGTGVTTNSLHPGAVDTELSRNWKFLKHPF 223

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|E1C8R5 WWOX "WW domain-containing oxidoreductase" [Gallus gallus (taxid:9031)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 94/235 (40%), Positives = 138/235 (58%)

Query:    12 FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVRE 71
             +  +STA E+ QG D +G   I+TGA+SGIG ETA+  AL G +VI+A RNM+ G D  +
Sbjct:   107 YDGNSTAMEILQGRDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQ 166

Query:    72 AIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIE 131
              I++E   AKV+AM LD++SL SV+ FA  + S+  PL+IL+ NA I  S + L++D +E
Sbjct:   167 RILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLE 226

Query:   132 LQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAY---SEG-IRFDKIN 187
               F  N            D +++     S   R+V VSSE+HRF     S G + F  ++
Sbjct:   227 STFQVNHLGHFYLVQLLEDILRR-----SSPARVVVVSSESHRFTEIKDSSGKLGFSLLS 281

Query:   188 -DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN 241
               +  Y +  AY +SKL NIL + EL + L   GV  T+NS+HPG+++ +    N
Sbjct:   282 PSKKEYWAMLAYNRSKLCNILFSNELNRRLSPHGV--TSNSVHPGNMIYSSIHRN 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1NXW7 WWOX "WW domain-containing oxidoreductase" [Gallus gallus (taxid:9031)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 94/235 (40%), Positives = 138/235 (58%)

Query:    12 FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVRE 71
             +  +STA E+ QG D +G   I+TGA+SGIG ETA+  AL G +VI+A RNM+ G D  +
Sbjct:   107 YDGNSTAMEILQGRDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQ 166

Query:    72 AIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIE 131
              I++E   AKV+AM LD++SL SV+ FA  + S+  PL+IL+ NA I  S + L++D +E
Sbjct:   167 RILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLE 226

Query:   132 LQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAY---SEG-IRFDKIN 187
               F  N            D +++     S   R+V VSSE+HRF     S G + F  ++
Sbjct:   227 STFQVNHLGHFYLVQLLEDILRR-----SSPARVVVVSSESHRFTEIKDSSGKLGFSLLS 281

Query:   188 -DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN 241
               +  Y +  AY +SKL NIL + EL + L   GV  T+NS+HPG+++ +    N
Sbjct:   282 PSKKEYWAMLAYNRSKLCNILFSNELNRRLSPHGV--TSNSVHPGNMIYSSIHRN 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6RVV4	TIC32_PEA	1, ., 1, ., 1, ., -	0.7935	0.9647	0.7784	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
cd05327	269	cd05327, retinol-DH_like_SDR_c_like, retinol dehyd	1e-93
PRK06197	306	PRK06197, PRK06197, short chain dehydrogenase; Pro	1e-75
cd09807	274	cd09807, retinol-DH_like_SDR_c, retinol dehydrogen	1e-73
PRK06196	315	PRK06196, PRK06196, oxidoreductase; Provisional	3e-73
cd09809	284	cd09809, human_WWOX_like_SDR_c-like, human WWOX (W	5e-57
PRK05854	313	PRK05854, PRK05854, short chain dehydrogenase; Pro	7e-54
cd09810	311	cd09810, LPOR_like_SDR_c_like, light-dependent pro	3e-42
PRK07453	322	PRK07453, PRK07453, protochlorophyllide oxidoreduc	2e-38
cd05233	234	cd05233, SDR_c, classical (c) SDRs	1e-37
PLN00015	308	PLN00015, PLN00015, protochlorophyllide reductase	2e-36
TIGR01289	314	TIGR01289, LPOR, light-dependent protochlorophylli	3e-36
COG1028	251	COG1028, FabG, Dehydrogenases with different speci	1e-33
cd05324	225	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu	5e-31
PRK05653	246	PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-27
PRK12826	251	PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote	1e-26
cd05325	233	cd05325, carb_red_sniffer_like_SDR_c, carbonyl red	2e-26
COG4221	246	COG4221, COG4221, Short-chain alcohol dehydrogenas	4e-26
COG0300	265	COG0300, DltE, Short-chain dehydrogenases of vario	7e-26
cd05374	248	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster	1e-25
cd09808	255	cd09808, DHRS-12_like_SDR_c-like, human dehydrogen	2e-24
cd05332	257	cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste	7e-23
PRK07231	251	PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-22
PRK12825	249	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein)	3e-22
PRK06914	280	PRK06914, PRK06914, short chain dehydrogenase; Pro	4e-22
PRK05565	247	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein)	5e-22
cd05362	243	cd05362, THN_reductase-like_SDR_c, tetrahydroxynap	6e-22
cd05346	249	cd05346, SDR_c5, classical (c) SDR, subgroup 5	2e-21
pfam00106	167	pfam00106, adh_short, short chain dehydrogenase	4e-21
cd05333	240	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein	4e-21
cd05370	228	cd05370, SDR_c2, classical (c) SDR, subgroup 2	1e-20
cd08951	260	cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13	2e-19
PRK05557	248	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-19
PRK06949	258	PRK06949, PRK06949, short chain dehydrogenase; Pro	3e-19
cd08941	290	cd08941, 3KS_SDR_c, 3-keto steroid reductase, clas	3e-19
PRK12429	258	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas	4e-19
cd05341	247	cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta	4e-19
cd05364	253	cd05364, SDR_c11, classical (c) SDR, subgroup 11	1e-18
cd05323	244	cd05323, ADH_SDR_c_like, insect type alcohol dehyd	2e-18
cd05344	253	cd05344, BKR_like_SDR_like, putative beta-ketoacyl	2e-18
cd05339	243	cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy	2e-18
PRK12939	250	PRK12939, PRK12939, short chain dehydrogenase; Pro	2e-18
cd08932	223	cd08932, HetN_like_SDR_c, HetN oxidoreductase-like	5e-18
PRK07825	273	PRK07825, PRK07825, short chain dehydrogenase; Pro	6e-18
TIGR01830	239	TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier	9e-18
PRK08324	681	PRK08324, PRK08324, short chain dehydrogenase; Val	1e-17
cd08943	250	cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al	3e-17
cd05358	253	cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc	4e-17
TIGR01963	255	TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase	5e-17
PRK06179	270	PRK06179, PRK06179, short chain dehydrogenase; Pro	6e-17
PRK07326	237	PRK07326, PRK07326, short chain dehydrogenase; Pro	7e-17
cd08934	243	cd08934, CAD_SDR_c, clavulanic acid dehydrogenase	1e-16
PRK12829	264	PRK12829, PRK12829, short chain dehydrogenase; Pro	2e-16
PRK09730	247	PRK09730, PRK09730, putative NAD(P)-binding oxidor	2e-16
cd08939	239	cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine	2e-16
PRK08589	272	PRK08589, PRK08589, short chain dehydrogenase; Val	3e-16
TIGR02632	676	TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate	5e-16
PRK12824	245	PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro	5e-16
cd05345	248	cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl	6e-16
cd05347	248	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena	7e-16
PRK12937	245	PRK12937, PRK12937, short chain dehydrogenase; Pro	7e-16
PRK07454	241	PRK07454, PRK07454, short chain dehydrogenase; Pro	7e-16
cd08929	226	cd08929, SDR_c4, classical (c) SDR, subgroup 4	7e-16
cd05352	252	cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M	9e-16
PRK08220	252	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy	1e-15
cd05350	239	cd05350, SDR_c6, classical (c) SDR, subgroup 6	2e-15
cd05331	244	cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz	2e-15
PRK12828	239	PRK12828, PRK12828, short chain dehydrogenase; Pro	2e-15
PRK07060	245	PRK07060, PRK07060, short chain dehydrogenase; Pro	3e-15
PRK07067	257	PRK07067, PRK07067, sorbitol dehydrogenase; Provis	5e-15
PRK05866	293	PRK05866, PRK05866, short chain dehydrogenase; Pro	5e-15
COG3967	245	COG3967, DltE, Short-chain dehydrogenase involved	6e-15
cd05351	244	cd05351, XR_like_SDR_c, xylulose reductase-like, c	7e-15
cd08930	250	cd08930, SDR_c8, classical (c) SDR, subgroup 8	9e-15
PRK07035	252	PRK07035, PRK07035, short chain dehydrogenase; Pro	9e-15
PRK07666	239	PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-14
PRK06182	273	PRK06182, PRK06182, short chain dehydrogenase; Val	2e-14
PRK12827	249	PRK12827, PRK12827, short chain dehydrogenase; Pro	5e-14
PRK07063	260	PRK07063, PRK07063, short chain dehydrogenase; Pro	6e-14
PRK05855	582	PRK05855, PRK05855, short chain dehydrogenase; Val	7e-14
PRK08017	256	PRK08017, PRK08017, oxidoreductase; Provisional	8e-14
PRK07774	250	PRK07774, PRK07774, short chain dehydrogenase; Pro	8e-14
PRK06181	263	PRK06181, PRK06181, short chain dehydrogenase; Pro	8e-14
PRK05993	277	PRK05993, PRK05993, short chain dehydrogenase; Pro	9e-14
PRK06123	248	PRK06123, PRK06123, short chain dehydrogenase; Pro	1e-13
cd05329	251	cd05329, TR_SDR_c, tropinone reductase-I and II (T	2e-13
TIGR04316	250	TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben	2e-13
PRK12743	256	PRK12743, PRK12743, oxidoreductase; Provisional	3e-13
PRK08264	238	PRK08264, PRK08264, short chain dehydrogenase; Val	3e-13
PRK06841	255	PRK06841, PRK06841, short chain dehydrogenase; Pro	4e-13
cd05338	246	cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena	4e-13
cd05359	242	cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c	6e-13
PRK07069	251	PRK07069, PRK07069, short chain dehydrogenase; Val	8e-13
PRK09242	257	PRK09242, PRK09242, tropinone reductase; Provision	9e-13
PRK07792	306	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-12
cd08940	258	cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge	1e-12
cd05337	255	cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl	1e-12
PRK07201	657	PRK07201, PRK07201, short chain dehydrogenase; Pro	1e-12
cd05326	249	cd05326, secoisolariciresinol-DH_like_SDR_c, secoi	2e-12
cd05343	250	cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c	2e-12
PRK06947	248	PRK06947, PRK06947, glucose-1-dehydrogenase; Provi	3e-12
PRK08277	278	PRK08277, PRK08277, D-mannonate oxidoreductase; Pr	4e-12
PRK09291	257	PRK09291, PRK09291, short chain dehydrogenase; Pro	4e-12
cd05367	241	cd05367, SPR-like_SDR_c, sepiapterin reductase (SP	6e-12
cd08944	246	cd08944, SDR_c12, classical (c) SDR, subgroup 12	6e-12
cd08935	271	cd08935, mannonate_red_SDR_c, putative D-mannonate	6e-12
PRK07109	334	PRK07109, PRK07109, short chain dehydrogenase; Pro	6e-12
cd05366	257	cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol	6e-12
PRK08261	450	PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein)	7e-12
PRK08226	263	PRK08226, PRK08226, short chain dehydrogenase; Pro	7e-12
PRK06125	259	PRK06125, PRK06125, short chain dehydrogenase; Pro	8e-12
cd05356	239	cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxyst	9e-12
cd05371	252	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr	1e-11
cd05354	235	cd05354, SDR_c7, classical (c) SDR, subgroup 7	1e-11
PRK06463	255	PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-11
PRK06077	252	PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-11
cd09806	258	cd09806, type1_17beta-HSD-like_SDR_c, human estrog	2e-11
cd05360	233	cd05360, SDR_c3, classical (c) SDR, subgroup 3	2e-11
cd09805	281	cd09805, type2_17beta_HSD-like_SDR_c, human 17beta	2e-11
PRK07062	265	PRK07062, PRK07062, short chain dehydrogenase; Pro	4e-11
PRK05650	270	PRK05650, PRK05650, short chain dehydrogenase; Pro	4e-11
PRK06124	256	PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro	5e-11
cd05353	250	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-	6e-11
PRK09072	263	PRK09072, PRK09072, short chain dehydrogenase; Pro	7e-11
PRK12935	247	PRK12935, PRK12935, acetoacetyl-CoA reductase; Pro	7e-11
PRK07832	272	PRK07832, PRK07832, short chain dehydrogenase; Pro	9e-11
cd05365	242	cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi	1e-10
PRK06194	287	PRK06194, PRK06194, hypothetical protein; Provisio	1e-10
cd05368	241	cd05368, DHRS6_like_SDR_c, human DHRS6-like, class	1e-10
PRK12746	254	PRK12746, PRK12746, short chain dehydrogenase; Pro	1e-10
cd05340	236	cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li	1e-10
PRK13394	262	PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas	1e-10
PRK06484	520	PRK06484, PRK06484, short chain dehydrogenase; Val	2e-10
TIGR01829	242	TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta	2e-10
TIGR03206	250	TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy	2e-10
PRK12748	256	PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-prote	2e-10
PRK09186	256	PRK09186, PRK09186, flagellin modification protein	3e-10
PRK08213	259	PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro	3e-10
PRK06138	252	PRK06138, PRK06138, short chain dehydrogenase; Pro	4e-10
cd08945	258	cd08945, PKR_SDR_c, Polyketide ketoreductase, clas	6e-10
PRK07074	257	PRK07074, PRK07074, short chain dehydrogenase; Pro	6e-10
PRK06550	235	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein)	8e-10
TIGR01500	256	TIGR01500, sepiapter_red, sepiapterin reductase	8e-10
PRK08263	275	PRK08263, PRK08263, short chain dehydrogenase; Pro	9e-10
cd05330	257	cd05330, cyclohexanol_reductase_SDR_c, cyclohexano	1e-09
cd08942	250	cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy	1e-09
PRK07806	248	PRK07806, PRK07806, short chain dehydrogenase; Pro	1e-09
PRK08945	247	PRK08945, PRK08945, putative oxoacyl-(acyl carrier	2e-09
cd05363	254	cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH),	2e-09
PRK08219	227	PRK08219, PRK08219, short chain dehydrogenase; Pro	2e-09
PRK06500	249	PRK06500, PRK06500, short chain dehydrogenase; Pro	3e-09
TIGR01832	248	TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena	3e-09
PRK06180	277	PRK06180, PRK06180, short chain dehydrogenase; Pro	3e-09
cd05369	249	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta	4e-09
PRK12745	256	PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote	4e-09
PRK06924	251	PRK06924, PRK06924, short chain dehydrogenase; Pro	4e-09
PRK07775	274	PRK07775, PRK07775, short chain dehydrogenase; Pro	5e-09
PRK08267	260	PRK08267, PRK08267, short chain dehydrogenase; Pro	6e-09
TIGR02415	254	TIGR02415, 23BDH, acetoin reductases	9e-09
PRK06484	520	PRK06484, PRK06484, short chain dehydrogenase; Val	1e-08
PRK07577	234	PRK07577, PRK07577, short chain dehydrogenase; Pro	1e-08
cd08928	248	cd08928, KR_fFAS_like_SDR_c_like, ketoacyl reducta	1e-08
PRK07814	263	PRK07814, PRK07814, short chain dehydrogenase; Pro	1e-08
PRK06113	255	PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydro	1e-08
PRK05693	274	PRK05693, PRK05693, short chain dehydrogenase; Pro	2e-08
PRK07523	255	PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro	2e-08
PRK06398	258	PRK06398, PRK06398, aldose dehydrogenase; Validate	2e-08
PRK06482	276	PRK06482, PRK06482, short chain dehydrogenase; Pro	2e-08
PRK12384	259	PRK12384, PRK12384, sorbitol-6-phosphate dehydroge	3e-08
PRK06171	266	PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro	3e-08
PRK07023	243	PRK07023, PRK07023, short chain dehydrogenase; Pro	3e-08
PRK06172	253	PRK06172, PRK06172, short chain dehydrogenase; Pro	3e-08
PRK07024	257	PRK07024, PRK07024, short chain dehydrogenase; Pro	3e-08
PRK06523	260	PRK06523, PRK06523, short chain dehydrogenase; Pro	4e-08
cd08933	261	cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl	5e-08
PRK06057	255	PRK06057, PRK06057, short chain dehydrogenase; Pro	5e-08
PRK07478	254	PRK07478, PRK07478, short chain dehydrogenase; Pro	5e-08
PRK12936	245	PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-prote	5e-08
cd08931	227	cd08931, SDR_c9, classical (c) SDR, subgroup 9	8e-08
PRK05867	253	PRK05867, PRK05867, short chain dehydrogenase; Pro	1e-07
PRK10538	248	PRK10538, PRK10538, malonic semialdehyde reductase	1e-07
cd09761	242	cd09761, A3DFK9-like_SDR_c, Clostridium thermocell	1e-07
PRK12747	252	PRK12747, PRK12747, short chain dehydrogenase; Pro	1e-07
PRK05872	296	PRK05872, PRK05872, short chain dehydrogenase; Pro	1e-07
pfam08659	181	pfam08659, KR, KR domain	2e-07
cd05328	250	cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid de	2e-07
PRK12823	260	PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1	2e-07
PRK06935	258	PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog	3e-07
PRK07791	286	PRK07791, PRK07791, short chain dehydrogenase; Pro	3e-07
PRK07097	265	PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro	5e-07
PRK08936	261	PRK08936, PRK08936, glucose-1-dehydrogenase; Provi	5e-07
cd05355	270	cd05355, SDR_c1, classical (c) SDR, subgroup 1	5e-07
cd05349	246	cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl	5e-07
PRK06701	290	PRK06701, PRK06701, short chain dehydrogenase; Pro	6e-07
cd08937	256	cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa	6e-07
PRK08339	263	PRK08339, PRK08339, short chain dehydrogenase; Pro	9e-07
PRK07890	258	PRK07890, PRK07890, short chain dehydrogenase; Pro	1e-06
PRK06114	254	PRK06114, PRK06114, short chain dehydrogenase; Pro	1e-06
cd09763	265	cd09763, DHRS1-like_SDR_c, human dehydrogenase/red	1e-06
PRK06198	260	PRK06198, PRK06198, short chain dehydrogenase; Pro	1e-06
cd05357	234	cd05357, PR_SDR_c, pteridine reductase (PR), class	1e-06
PRK06139	330	PRK06139, PRK06139, short chain dehydrogenase; Pro	3e-06
PRK08643	256	PRK08643, PRK08643, acetoin reductase; Validated	3e-06
PLN02780	320	PLN02780, PLN02780, ketoreductase/ oxidoreductase	4e-06
cd05274	375	cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt	4e-06
PRK12481	251	PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrog	5e-06
PRK08265	261	PRK08265, PRK08265, short chain dehydrogenase; Pro	7e-06
PRK08628	258	PRK08628, PRK08628, short chain dehydrogenase; Pro	8e-06
PRK07831	262	PRK07831, PRK07831, short chain dehydrogenase; Pro	1e-05
PRK08063	250	PRK08063, PRK08063, enoyl-(acyl carrier protein) r	2e-05
PRK12742	237	PRK12742, PRK12742, oxidoreductase; Provisional	2e-05
PRK08251	248	PRK08251, PRK08251, short chain dehydrogenase; Pro	2e-05
PRK08642	253	PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-05
TIGR03971	265	TIGR03971, SDR_subfam_1, oxidoreductase, SDR famil	3e-05
PRK06940	275	PRK06940, PRK06940, short chain dehydrogenase; Pro	6e-05
PRK07677	252	PRK07677, PRK07677, short chain dehydrogenase; Pro	6e-05
PRK08217	253	PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein)	7e-05
PRK08703	239	PRK08703, PRK08703, short chain dehydrogenase; Pro	7e-05
smart00822	180	smart00822, PKS_KR, This enzymatic domain is part	1e-04
PRK08278	273	PRK08278, PRK08278, short chain dehydrogenase; Pro	1e-04
PRK08085	254	PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro	1e-04
PRK05876	275	PRK05876, PRK05876, short chain dehydrogenase; Pro	2e-04
cd05373	238	cd05373, SDR_c10, classical (c) SDR, subgroup 10	2e-04
PRK12744	257	PRK12744, PRK12744, short chain dehydrogenase; Pro	2e-04
PRK08177	225	PRK08177, PRK08177, short chain dehydrogenase; Pro	2e-04
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	3e-04
PLN02657	390	PLN02657, PLN02657, 3,8-divinyl protochlorophyllid	3e-04
PRK06128	300	PRK06128, PRK06128, oxidoreductase; Provisional	3e-04
cd11731	198	cd11731, Lin1944_like_SDR_c, Lin1944 and related p	8e-04
cd11730	206	cd11730, Tthb094_like_SDR_c, Tthb094 and related p	0.001
PRK05717	255	PRK05717, PRK05717, oxidoreductase; Validated	0.002
PRK06200	263	PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydropheny	0.002
PRK07856	252	PRK07856, PRK07856, short chain dehydrogenase; Pro	0.002
cd08936	256	cd08936, CR_SDR_c, Porcine peroxisomal carbonyl re	0.002
PRK12938	246	PRK12938, PRK12938, acetyacetyl-CoA reductase; Pro	0.002
cd05348	257	cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydro	0.003
PLN02253	280	PLN02253, PLN02253, xanthoxin dehydrogenase	0.003
pfam13460	182	pfam13460, NAD_binding_10, NADH(P)-binding	0.004

>gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs

 Score =  276 bits (707), Expect = 1e-93
 Identities = 112/217 (51%), Positives = 142/217 (65%), Gaps = 8/217 (3%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G   ++TGA+SGIG ETAR LA RG HVI+A RN   G++    I KE  +AKV+ ++LD
Sbjct: 1   GKVVVITGANSGIGKETARELAKRGAHVIIACRNEEKGEEAAAEIKKETGNAKVEVIQLD 60

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLL 148
           +SSLASVR+FA E+ ++   L+ILINNAGIMA P  L+KD  ELQFA N+LGHFLLT+LL
Sbjct: 61  LSSLASVRQFAEEFLARFPRLDILINNAGIMAPPRRLTKDGFELQFAVNYLGHFLLTNLL 120

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           L  +K      S   RIVNVSS AHR           + +   Y+ + AYGQSKLANIL 
Sbjct: 121 LPVLKA-----SAPSRIVNVSSIAHRAG-PIDFNDLDLENNKEYSPYKAYGQSKLANILF 174

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILR 245
            +ELA+ L+  G  +T N+LHPG + T L R NG   
Sbjct: 175 TRELARRLEGTG--VTVNALHPGVVRTELLRRNGSFF 209

Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269

>gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional

 Score =  231 bits (591), Expect = 1e-75
 Identities = 98/215 (45%), Positives = 122/215 (56%), Gaps = 9/215 (4%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM 85
           D +G  A+VTGA++G+G ETA  LA +G HV++AVRN+  GK     I    P A V   
Sbjct: 13  DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQ 72

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLT 145
           ELD++SLASVR  A    +    +++LINNAG+M +P   + D  ELQF TNHLGHF LT
Sbjct: 73  ELDLTSLASVRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALT 132

Query: 146 HLLLDTMKKTAQKSSREG-RIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
            LLLD +          G R+V VSS  HR      I FD +  E  YN   AYGQSKLA
Sbjct: 133 GLLLDRLLPV------PGSRVVTVSSGGHRI--RAAIHFDDLQWERRYNRVAAYGQSKLA 184

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           N+L   EL + L   G    A + HPG   T L R
Sbjct: 185 NLLFTYELQRRLAAAGATTIAVAAHPGVSNTELAR 219

Length = 306

>gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs

 Score =  225 bits (575), Expect = 1e-73
 Identities = 105/215 (48%), Positives = 144/215 (66%), Gaps = 10/215 (4%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G T I+TGA++GIG ETAR LA RG  VIMA R+MA  ++    I ++  + +V    LD
Sbjct: 1   GKTVIITGANTGIGKETARELARRGARVIMACRDMAKCEEAAAEIRRDTLNHEVIVRHLD 60

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLL 148
           ++SL S+R FA+E+ ++   L++LINNAG+M  P+  ++D  E+QF  NHLGHFLLT+LL
Sbjct: 61  LASLKSIRAFAAEFLAEEDRLDVLINNAGVMRCPYSKTEDGFEMQFGVNHLGHFLLTNLL 120

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           LD +KK+A       RIVNVSS AH+      I FD +N E +YN+  AY QSKLAN+L 
Sbjct: 121 LDLLKKSA-----PSRIVNVSSLAHKAGK---INFDDLNSEKSYNTGFAYCQSKLANVLF 172

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI 243
            +ELA+ L+  G  +T N+LHPG + T L R+ GI
Sbjct: 173 TRELARRLQ--GTGVTVNALHPGVVRTELGRHTGI 205

Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274

>gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional

 Score =  225 bits (576), Expect = 3e-73
 Identities = 104/231 (45%), Positives = 132/231 (57%), Gaps = 16/231 (6%)

Query: 10  SGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV 69
           SGF A+STAEEV  G D +G TAIVTG  SG+G ET R LA  G HVI+  R     ++ 
Sbjct: 7   SGFGAASTAEEVLAGHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREA 66

Query: 70  REAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDN 129
              I        V+ + LD++ L SVR FA  +   GR ++ILINNAG+MA P     D 
Sbjct: 67  LAGI------DGVEVVMLDLADLESVRAFAERFLDSGRRIDILINNAGVMACPETRVGDG 120

Query: 130 IELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE 189
            E QFATNHLGHF L +LL   +   A   +   R+V +SS  HR +    IR+D  +  
Sbjct: 121 WEAQFATNHLGHFALVNLLWPAL--AAGAGA---RVVALSSAGHRRS---PIRWDDPHFT 172

Query: 190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
             Y+ + AYGQSK AN L A  L K  K+ GV   A S+HPG I+T L R+
Sbjct: 173 RGYDKWLAYGQSKTANALFAVHLDKLGKDQGVR--AFSVHPGGILTPLQRH 221

Length = 315

>gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs

 Score =  183 bits (465), Expect = 5e-57
 Identities = 90/217 (41%), Positives = 135/217 (62%), Gaps = 13/217 (5%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G   I+TGA+SGIG ETAR  AL G HVI+A RNM+        I++E   A+V+AM LD
Sbjct: 1   GKVIIITGANSGIGFETARSFALHGAHVILACRNMSRASAAVSRILEEWHKARVEAMTLD 60

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLL 148
           ++SL SV++FA  + ++  PL++L+ NA + A P+ L++D +E  F  NHLGHF L  LL
Sbjct: 61  LASLRSVQRFAEAFKAKNSPLHVLVCNAAVFALPWTLTEDGLETTFQVNHLGHFYLVQLL 120

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFA----YSEGIRFDKIN-DESAYNSFGAYGQSKL 203
            D ++++A       R++ VSSE+HRF         + F  ++  +  Y S  AY ++KL
Sbjct: 121 EDVLRRSAP-----ARVIVVSSESHRFTDLPDSCGNLDFSLLSPPKKKYWSMLAYNRAKL 175

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIV-TNLFR 239
            NIL + EL + L   G  IT+NSLHPG+++ +++ R
Sbjct: 176 CNILFSNELHRRLSPRG--ITSNSLHPGNMMYSSIHR 210

Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284

>gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional

 Score =  176 bits (447), Expect = 7e-54
 Identities = 92/213 (43%), Positives = 119/213 (55%), Gaps = 10/213 (4%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM 85
           D +G  A+VTGAS G+G   AR LA  G  VI+ VRN A G+    AI   +P AK+   
Sbjct: 11  DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLR 70

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASP-FMLSKDNIELQFATNHLGHFLL 144
            LD+SSLASV     +  ++GRP+++LINNAG+M  P    + D  ELQF TNHLGHF L
Sbjct: 71  ALDLSSLASVAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFAL 130

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T  LL  ++          R+ + SS A   A    I +D +N E +Y    AY QSK+A
Sbjct: 131 TAHLLPLLRAGR------ARVTSQSSIA---ARRGAINWDDLNWERSYAGMRAYSQSKIA 181

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
             L A EL +  +  G  IT+N  HPG   TNL
Sbjct: 182 VGLFALELDRRSRAAGWGITSNLAHPGVAPTNL 214

Length = 313

>gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs

 Score =  146 bits (369), Expect = 3e-42
 Identities = 81/232 (34%), Positives = 113/232 (48%), Gaps = 29/232 (12%)

Query: 31  TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV 89
           T ++TGASSG+G   A+ LA RG  HV+MA R+    +   + +   +P      +  D+
Sbjct: 3   TVVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQEVG--MPKDSYSVLHCDL 60

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNHLGHFLLTH 146
           +SL SVR+F   +   GRPL+ L+ NA +    A     + D  EL    NHLGHFLLT+
Sbjct: 61  ASLDSVRQFVDNFRRTGRPLDALVCNAAVYLPTAKEPRFTADGFELTVGVNHLGHFLLTN 120

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI------------------RFDKIND 188
           LLL+ ++++   S    RIV V S  H      G                    F+ + D
Sbjct: 121 LLLEDLQRSENASP---RIVIVGSITHNPNTLAGNVPPRATLGDLEGLAGGLKGFNSMID 177

Query: 189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV-TNLFR 239
              +    AY  SK+ N+L   EL + L E    IT NSL+PG I  T LFR
Sbjct: 178 GGEFEGAKAYKDSKVCNMLTTYELHRRLHE-ETGITFNSLYPGCIAETGLFR 228

Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311

>gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated

 Score =  136 bits (344), Expect = 2e-38
 Identities = 81/235 (34%), Positives = 117/235 (49%), Gaps = 34/235 (14%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           T I+TGASSG+G   A+ LA RG HVIMA RN+   K    A    IP      + +D+ 
Sbjct: 8   TVIITGASSGVGLYAAKALAKRGWHVIMACRNLK--KAEAAAQELGIPPDSYTIIHIDLG 65

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGI----MASPFMLSKDNIELQFATNHLGHFLLTH 146
            L SVR+F  ++ + G+PL+ L+ NA +    +  P + S    EL  ATNHLGHFLL +
Sbjct: 66  DLDSVRRFVDDFRALGKPLDALVCNAAVYMPLLKEP-LRSPQGYELSMATNHLGHFLLCN 124

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRF-------------------AYSEGIRFDKIN 187
           LLL+ +KK+    + + R+V + +                         +  G +   I+
Sbjct: 125 LLLEDLKKS---PAPDPRLVILGTVTANPKELGGKIPIPAPADLGDLSGFEAGFK-APIS 180

Query: 188 --DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV-TNLFR 239
             D   +    AY  SKL N+L  +EL +   E    IT +SL+PG +  T LFR
Sbjct: 181 MADGKKFKPGKAYKDSKLCNMLTMRELHRRYHES-TGITFSSLYPGCVADTPLFR 234

Length = 322

>gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs

 Score =  132 bits (333), Expect = 1e-37
 Identities = 71/208 (34%), Positives = 91/208 (43%), Gaps = 27/208 (12%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           A+VTGASSGIG   AR LA  G  V++A RN  A     E    E       A++ DVS 
Sbjct: 1   ALVTGASSGIGRAIARRLAREGAKVVLADRNEEALA---ELAAIEALGGNAVAVQADVSD 57

Query: 92  LASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLTHLLL 149
              V     E   +   L+IL+NNAGI     +  L+ ++ +     N  G FLLT   L
Sbjct: 58  EEDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLLTRAAL 117

Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             MKK        GRIVN+SS A       G+R              AY  SK A     
Sbjct: 118 PHMKK-----QGGGRIVNISSVA-------GLR--------PLPGQAAYAASKAALEGLT 157

Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNL 237
           + LA  L   G  I  N++ PG + T +
Sbjct: 158 RSLALELAPYG--IRVNAVAPGLVDTPM 183

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234

>gnl|CDD|177654 PLN00015, PLN00015, protochlorophyllide reductase

 Score =  130 bits (330), Expect = 2e-36
 Identities = 84/229 (36%), Positives = 115/229 (50%), Gaps = 25/229 (10%)

Query: 33  IVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           I+TGASSG+G  TA+ LA  G  HV+MA R+    +  R A    +P      M LD++S
Sbjct: 1   IITGASSGLGLATAKALAETGKWHVVMACRDFLKAE--RAAKSAGMPKDSYTVMHLDLAS 58

Query: 92  LASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNHLGHFLLTHLL 148
           L SVR+F   +   GRPL++L+ NA +    A     + D  EL   TNHLGHFLL+ LL
Sbjct: 59  LDSVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLL 118

Query: 149 LDTMKKTAQKSSR---EGRIV--------NVSSEAHRFAYS------EGIRFDKINDESA 191
           LD +KK+   S R    G I         NV  +A+            G+    + D   
Sbjct: 119 LDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGE 178

Query: 192 YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV-TNLFR 239
           ++   AY  SK+ N+L  +E  +   E+   IT  SL+PG I  T LFR
Sbjct: 179 FDGAKAYKDSKVCNMLTMQEFHRRYHEE-TGITFASLYPGCIATTGLFR 226

Length = 308

>gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase

 Score =  130 bits (328), Expect = 3e-36
 Identities = 80/231 (34%), Positives = 111/231 (48%), Gaps = 27/231 (11%)

Query: 31  TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEI--PSAKVDAMEL 87
           T I+TGASSG+G   A+ LA  G  HVIMA R+        E   K +  P      M L
Sbjct: 5   TVIITGASSGLGLYAAKALAATGEWHVIMACRDF----LKAEQAAKSLGMPKDSYTIMHL 60

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNHLGHFLL 144
           D+ SL SVR+F  ++   GRPL+ L+ NA +    A     + D  EL   TNHLGHFLL
Sbjct: 61  DLGSLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLL 120

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN---------------DE 189
            +LLLD +K +  K  R   + +++   +  A +   + +  +               D 
Sbjct: 121 CNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANLGDLSGLAAGFKAPIAMIDG 180

Query: 190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV-TNLFR 239
             +    AY  SK+ N+L  +EL +    D   IT  SL+PG I  T LFR
Sbjct: 181 KEFKGAKAYKDSKVCNMLTVRELHRRF-HDETGITFASLYPGCIADTGLFR 230

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314

>gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score =  121 bits (306), Expect = 1e-33
 Identities = 68/214 (31%), Positives = 91/214 (42%), Gaps = 30/214 (14%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGK-DVREAIVKEIPSAKVDAMELDV 89
            A+VTGASSGIG   AR LA  G  V++A R       +   A +KE    +  A+  DV
Sbjct: 7   VALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADV 66

Query: 90  SS-LASVRKFASEYNSQGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLT 145
           S    SV    +    +   ++IL+NNAGI    A    L++++ +     N LG FLLT
Sbjct: 67  SDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLT 126

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L           ++ RIVN+SS A                        AY  SK A 
Sbjct: 127 RAAL--------PLMKKQRIVNISSVAGLGGPP---------------GQAAYAASKAAL 163

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           I   K LA  L   G  I  N++ PG I T +  
Sbjct: 164 IGLTKALALELAPRG--IRVNAVAPGYIDTPMTA 195

Length = 251

>gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs

 Score =  114 bits (287), Expect = 5e-31
 Identities = 68/205 (33%), Positives = 88/205 (42%), Gaps = 32/205 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV 89
            A+VTGA+ GIG E  R LA  G   VI+  R++  G+   E +  E     V   +LDV
Sbjct: 2   VALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAE--GLSVRFHQLDV 59

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNHLGHFLLTH 146
           +  AS+   A     +   L+IL+NNAGI          +++       TN  G   +T 
Sbjct: 60  TDDASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQARETMKTNFFGTVDVTQ 119

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
            LL  +KK     S  GRIVNVSS         G         SAY        SK A  
Sbjct: 120 ALLPLLKK-----SPAGRIVNVSS-------GLGSL------TSAYGV------SKAALN 155

Query: 207 LHAKELAKHLKEDGVNITANSLHPG 231
              + LAK LKE    I  N+  PG
Sbjct: 156 ALTRILAKELKET--GIKVNACCPG 178

PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225

>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score =  105 bits (265), Expect = 2e-27
 Identities = 67/214 (31%), Positives = 93/214 (43%), Gaps = 32/214 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
            G TA+VTGAS GIG   A  LA  G  V++   N  A     EA+  E+ +A  +   +
Sbjct: 4   QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAA----EALAAELRAAGGEARVL 59

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFM-LSKDNIELQFATNHLGHF 142
             DVS  A+VR            L+IL+NNAGI   A     +S+++ +     N  G F
Sbjct: 60  VFDVSDEAAVRALIEAAVEAFGALDILVNNAGITRDA-LLPRMSEEDWDRVIDVNLTGTF 118

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
            +    L  M K     +R GRIVN+SS               ++  +       Y  +K
Sbjct: 119 NVVRAALPPMIK-----ARYGRIVNISS---------------VSGVTGNPGQTNYSAAK 158

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTN 236
              I   K LA  L   G  IT N++ PG I T+
Sbjct: 159 AGVIGFTKALALELASRG--ITVNAVAPGFIDTD 190

Length = 246

>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

 Score =  103 bits (259), Expect = 1e-26
 Identities = 61/210 (29%), Positives = 84/210 (40%), Gaps = 25/210 (11%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTGA+ GIG   A  LA  G  VI+            E +      A+  A ++
Sbjct: 5   EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKAR--ARQV 62

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLT 145
           DV   A+++   +        L+IL+ NAGI  +     +  +  E     N  G FLLT
Sbjct: 63  DVRDRAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLT 122

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L  + +     +  GRIV  SS A       G R         Y     Y  SK   
Sbjct: 123 QAALPALIR-----AGGGRIVLTSSVA-------GPRV-------GYPGLAHYAASKAGL 163

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           +   + LA  L     NIT NS+HPG + T
Sbjct: 164 VGFTRALALELAAR--NITVNSVHPGGVDT 191

Length = 251

>gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs

 Score =  102 bits (256), Expect = 2e-26
 Identities = 74/226 (32%), Positives = 101/226 (44%), Gaps = 36/226 (15%)

Query: 32  AIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            ++TGAS GIG E  R L  RG   VI   R+ +A  ++          +++  +ELDV+
Sbjct: 1   VLITGASRGIGLELVRQLLARGNNTVIATCRDPSAATELAALGASH---SRLHILELDVT 57

Query: 91  SL--ASVRKFASEYNSQGRPLNILINNAGIMASPFMLS---KDNIELQFATNHLGHFLLT 145
                S    A      G  L++LINNAGI+ S    S    +++   F  N LG  LLT
Sbjct: 58  DEIAESAEAVAERLGDAG--LDVLINNAGILHSYGPASEVDSEDLLEVFQVNVLGPLLLT 115

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG--AYGQSKL 203
              L  + K A+       I+N+SS           R   I D     S G  +Y  SK 
Sbjct: 116 QAFLPLLLKGARAK-----IINISS-----------RVGSIGDN---TSGGWYSYRASKA 156

Query: 204 A-NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDF 248
           A N+L  K LA  LK DG  IT  SLHPG + T++       +G  
Sbjct: 157 ALNML-TKSLAVELKRDG--ITVVSLHPGWVRTDMGGPFAKNKGPI 199

Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233

>gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

 Score =  101 bits (255), Expect = 4e-26
 Identities = 65/215 (30%), Positives = 96/215 (44%), Gaps = 32/215 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A++TGASSGIG  TAR LA  G  V++A R     ++  EA+  EI +    A+ L
Sbjct: 5   KGKVALITGASSGIGEATARALAEAGAKVVLAARR----EERLEALADEIGAGAALALAL 60

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLT 145
           DV+  A+V         +   ++IL+NNAG+     +     D+ +    TN  G    T
Sbjct: 61  DVTDRAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGT 120

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             +L  M    +KS   G I+N+ S A R+ Y  G                 YG +K A 
Sbjct: 121 RAVLPGMV--ERKS---GHIINLGSIAGRYPYPGG---------------AVYGATKAA- 159

Query: 206 ILHA--KELAKHLKEDGVNITANSLHPGSIVTNLF 238
            + A    L + L   G+ +T   + PG + T  F
Sbjct: 160 -VRAFSLGLRQELAGTGIRVT--VISPGLVETTEF 191

Length = 246

>gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]

 Score =  101 bits (254), Expect = 7e-26
 Identities = 63/211 (29%), Positives = 97/211 (45%), Gaps = 27/211 (12%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           TA++TGASSGIG E A+ LA RG ++I+  R     + + + +  +    +V+ +  D+S
Sbjct: 8   TALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLS 66

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLTHLL 148
              ++ +   E   +G P+++L+NNAG     PF+ LS D  E     N L    LT  +
Sbjct: 67  DPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAV 126

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           L  M +        G I+N+ S A                   Y +   Y  +K A +L 
Sbjct: 127 LPGMVE-----RGAGHIINIGSAA---GLIPT----------PYMA--VYSATK-AFVLS 165

Query: 209 AKE-LAKHLKEDGVNITANSLHPGSIVTNLF 238
             E L + LK  GV +TA  + PG   T  F
Sbjct: 166 FSEALREELKGTGVKVTA--VCPGPTRTEFF 194

Length = 265

>gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score =  100 bits (252), Expect = 1e-25
 Identities = 58/217 (26%), Positives = 83/217 (38%), Gaps = 33/217 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
             ++TG SSGIG   A  LA +G  VI   RN      +         + +V  +ELDV+
Sbjct: 2   VVLITGCSSGIGLALALALAAQGYRVIATARN---PDKLESLGELLNDNLEV--LELDVT 56

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMAS-PFM-LSKDNIELQFATNHLGHFLLTHLL 148
              S++    E   +   +++L+NNAG     P    S + +   F  N  G   +T   
Sbjct: 57  DEESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLEETSIEEVRELFEVNVFGPLRVTRAF 116

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           L  M+K        GRIVNVSS A                   Y +      SK A  L 
Sbjct: 117 LPLMRK-----QGSGRIVNVSSVAGLVPTPFL---------GPYCA------SKAA--LE 154

Query: 209 A--KELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI 243
           A  + L   L   G+ +T   + PG + T        
Sbjct: 155 ALSESLRLELAPFGIKVT--IIEPGPVRTGFADNAAG 189

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs

 Score = 97.7 bits (243), Expect = 2e-24
 Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 13/204 (6%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G + ++TGA+SGIG   A  +A RG  V M  RN    ++ R+ I  E  +  +    +D
Sbjct: 1   GRSFLITGANSGIGKAAALAIAKRGGTVHMVCRNQTRAEEARKEIETESGNQNIFLHIVD 60

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLL 148
           +S    V +F  E+  +G+ L++LINNAG M +   L++D +E  FATN LG ++LT  L
Sbjct: 61  MSDPKQVWEFVEEFKEEGKKLHVLINNAGCMVNKRELTEDGLEKNFATNTLGTYILTTHL 120

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE-SAYNSFGAYGQSKLANIL 207
           +  ++K       + R++ VSS        + +  + +  E +A++    Y Q+K   ++
Sbjct: 121 IPVLEK-----EEDPRVITVSSGG---MLVQKLNTNNLQSERTAFDGTMVYAQNKRQQVI 172

Query: 208 HAKELAKHLKEDGVNITANSLHPG 231
             ++ AK        I  + +HPG
Sbjct: 173 MTEQWAKKHP----EIHFSVMHPG 192

Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255

>gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs

 Score = 93.4 bits (233), Expect = 7e-23
 Identities = 62/207 (29%), Positives = 88/207 (42%), Gaps = 25/207 (12%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL 92
           I+TGASSGIG E A  LA  G  ++++ R     ++V+     E+ +     + LD+S L
Sbjct: 7   IITGASSGIGEELAYHLARLGARLVLSARREERLEEVKSEC-LELGAPSPHVVPLDMSDL 65

Query: 93  ASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLTHLLLD 150
               +   E       L+ILINNAGI M S F   S D        N+ G   LT   L 
Sbjct: 66  EDAEQVVEEALKLFGGLDILINNAGISMRSLFHDTSIDVDRKIMEVNYFGPVALTKAALP 125

Query: 151 TMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAK 210
            + +       +G IV VSS A +                 + +  AY  SK A      
Sbjct: 126 HLIE-----RSQGSIVVVSSIAGKIGV-------------PFRT--AYAASKHALQGFFD 165

Query: 211 ELAKHLKEDGVNITANSLHPGSIVTNL 237
            L   L E  +++T   + PG I TN+
Sbjct: 166 SLRAELSEPNISVT--VVCPGLIDTNI 190

Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 92.6 bits (231), Expect = 1e-22
 Identities = 65/213 (30%), Positives = 90/213 (42%), Gaps = 28/213 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  AIVTGASSGIG   AR  A  G  V++  RN  A + V   I+      +  A+  
Sbjct: 4   EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAG---GRAIAVAA 60

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFM-LSKDNIELQFATNHLGHFLL 144
           DVS  A V    +    +   ++IL+NNAG      P + + +   +  FA N    +L 
Sbjct: 61  DVSDEADVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLW 120

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T   +  M+         G IVNV+S A       G+R             G Y  SK A
Sbjct: 121 TQAAVPAMRGEGG-----GAIVNVASTA-------GLRPRP--------GLGWYNASKGA 160

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            I   K LA  L  D + +  N++ P  + T L
Sbjct: 161 VITLTKALAAELGPDKIRV--NAVAPVVVETGL 191

Length = 251

>gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 91.5 bits (228), Expect = 3e-22
 Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 43/216 (19%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELD 88
            A+VTGA+ G+G   A  LA  G  V++  R+        E +V+ + +   +  A++ D
Sbjct: 8   VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAA---EELVEAVEALGRRAQAVQAD 64

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLTH 146
           V+  A++    +    +   ++IL+NNAGI    P   +S D  +     N  G F L  
Sbjct: 65  VTDKAALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLR 124

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG--AYGQSK-- 202
            ++  M+K      R GRIVN+SS A                       G   Y  +K  
Sbjct: 125 AVVPPMRKQ-----RGGRIVNISSVA-----------------GLPGWPGRSNYAAAKAG 162

Query: 203 ---LANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
              L   L A+ELA++       IT N + PG I T
Sbjct: 163 LVGLTKAL-ARELAEY------GITVNMVAPGDIDT 191

Length = 249

>gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional

 Score = 92.0 bits (229), Expect = 4e-22
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 8/149 (5%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            AIVTGASSG G  T   LA +G  VI  +RN    +++     +      +   +LDV+
Sbjct: 5   IAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVT 64

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLTHLL 148
              S+  F       GR +++L+NNAG     F+  +  +    QF TN  G   +T  +
Sbjct: 65  DQNSIHNFQLVLKEIGR-IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAV 123

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAY 177
           L  M+K      + G+I+N+SS + R  +
Sbjct: 124 LPYMRKQ-----KSGKIINISSISGRVGF 147

Length = 280

>gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 91.1 bits (227), Expect = 5e-22
 Identities = 67/218 (30%), Positives = 91/218 (41%), Gaps = 41/218 (18%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAV-RNMAAGKDVREAIVKEIPSAKVDAM-- 85
           G  AIVTGAS GIG   A +LA  G  V++A   N  A     + +++EI     DA+  
Sbjct: 5   GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAA----QELLEEIKEEGGDAIAV 60

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMAS-PFM-LSKDNIELQFATNHLGHFL 143
           + DVSS   V     +   +   ++IL+NNAGI        ++ +  +     N  G  L
Sbjct: 61  KADVSSEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVML 120

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGA-----Y 198
           LT   L  M K      + G IVN+S                    S +   GA     Y
Sbjct: 121 LTRYALPYMIKR-----KSGVIVNIS--------------------SIWGLIGASCEVLY 155

Query: 199 GQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN 236
             SK A     K LAK L   G  I  N++ PG+I T 
Sbjct: 156 SASKGAVNAFTKALAKELAPSG--IRVNAVAPGAIDTE 191

Length = 247

>gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs

 Score = 90.8 bits (226), Expect = 6e-22
 Identities = 65/216 (30%), Positives = 97/216 (44%), Gaps = 31/216 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM-- 85
            G  A+VTGAS GIG   A+ LA  G  V++   N A+ K   E +V EI +A   A+  
Sbjct: 2   AGKVALVTGASRGIGRAIAKRLARDGASVVV---NYASSKAAAEEVVAEIEAAGGKAIAV 58

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIEL--QFATNHLGHFL 143
           + DVS  + V +           ++IL+NNAG+M    +      E    F  N  G F 
Sbjct: 59  QADVSDPSQVARLFDAAEKAFGGVDILVNNAGVMLKKPIAETSEEEFDRMFTVNTKGAFF 118

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                   +++ A++    GRI+N+SS                   +   ++GAY  SK 
Sbjct: 119 -------VLQEAAKRLRDGGRIINISSSLTA---------------AYTPNYGAYAGSKA 156

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           A     + LAK L   G  IT N++ PG + T++F 
Sbjct: 157 AVEAFTRVLAKELGGRG--ITVNAVAPGPVDTDMFY 190

1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5

 Score = 89.6 bits (223), Expect = 2e-21
 Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 38/222 (17%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA---KVDAMEL 87
           T ++TGASSGIG  TAR  A  G  +I+  R      +  + +  E+ +    KV  ++L
Sbjct: 2   TVLITGASSGIGEATARRFAKAGAKLILTGRR----AERLQELADELGAKFPVKVLPLQL 57

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNHLGHFLL 144
           DVS   S+         + R ++IL+NNAG+   +        ++ E    TN  G   +
Sbjct: 58  DVSDRESIEAALENLPEEFRDIDILVNNAGLALGLDPAQEADLEDWETMIDTNVKGLLNV 117

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T L+L  M    Q     G I+N+ S A R+ Y+ G                 Y  +K A
Sbjct: 118 TRLILPIMIARNQ-----GHIINLGSIAGRYPYAGG---------------NVYCATKAA 157

Query: 205 NILHAKELAKHLKED--GVNITANSLHPGSIVT--NLFRYNG 242
                ++ + +L++D  G  I   ++ PG + T  +L R++G
Sbjct: 158 ----VRQFSLNLRKDLIGTGIRVTNIEPGLVETEFSLVRFHG 195

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase

 Score = 86.8 bits (216), Expect = 4e-21
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 16/147 (10%)

Query: 31  TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPS--AKVDAMEL 87
           T ++TG + G+G   AR LA  G  H+++  R   A       +V E+ +  A+V     
Sbjct: 2   TVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGA--AELVAELEALGAEVTVAAC 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLT 145
           DV+   ++    +   +   PL+ +++NAG+        L+ +  E   A    G + L 
Sbjct: 60  DVADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGAWNLH 119

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEA 172
            L  D            G  V  SS A
Sbjct: 120 ELTRDL---------DLGAFVLFSSVA 137

This family contains a wide variety of dehydrogenases. Length = 167

>gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs

 Score = 88.4 bits (220), Expect = 4e-21
 Identities = 65/219 (29%), Positives = 89/219 (40%), Gaps = 46/219 (21%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+VTGAS GIG   A  LA  G  V +  R+  A  +  E I          A+E DVS
Sbjct: 2   VALVTGASRGIGRAIALRLAAEGAKVAVTDRSEEAAAETVEEIKA--LGGNAAALEADVS 59

Query: 91  SLASVRK-FASEYNSQGRPLNILINNAGIMASPFML--SKDNIELQFATNHLGHFLLTHL 147
              +V           G   +IL+NNAGI     ++  S+++ +     N  G F +T  
Sbjct: 60  DREAVEALVEKVEAEFGPV-DILVNNAGITRDNLLMRMSEEDWDAVINVNLTGVFNVTQA 118

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ-----SK 202
           ++  M K      R GRI+N+SS         G+              G  GQ     SK
Sbjct: 119 VIRAMIK-----RRSGRIINISSVV-------GLI-------------GNPGQANYAASK 153

Query: 203 LANI-LH---AKELAKHLKEDGVNITANSLHPGSIVTNL 237
              I      AKELA         IT N++ PG I T++
Sbjct: 154 AGVIGFTKSLAKELASR------GITVNAVAPGFIDTDM 186

This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240

>gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2

 Score = 86.6 bits (215), Expect = 1e-20
 Identities = 50/148 (33%), Positives = 66/148 (44%), Gaps = 17/148 (11%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           TG T ++TG +SGIG   AR     G  VI+  R     ++      KE+P+     + L
Sbjct: 4   TGNTVLITGGTSGIGLALARKFLEAGNTVIITGRR----EERLAEAKKELPNIH--TIVL 57

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSK-----DNIELQFATNHLGHF 142
           DV    SV   A    S+   L+ILINNAGI   P  L       D  + +  TN +G  
Sbjct: 58  DVGDAESVEALAEALLSEYPNLDILINNAGIQ-RPIDLRDPASDLDKADTEIDTNLIGPI 116

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSS 170
            L    L  +KK  +       IVNVSS
Sbjct: 117 RLIKAFLPHLKKQPE-----ATIVNVSS 139

Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228

>gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs

 Score = 84.5 bits (209), Expect = 2e-19
 Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 26/206 (12%)

Query: 34  VTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLA 93
           +TG+S G+G   AR L  +G  V++  R+     D +       P A    +  D+SSLA
Sbjct: 12  ITGSSDGLGLAAARTLLHQGHEVVLHARSQKRAADAK----AACPGAAG-VLIGDLSSLA 66

Query: 94  SVRKFASEYNSQGRPLNILINNAGIMASPFMLSKD-NIELQFATNHLGHFLLTHLLLDTM 152
             RK A + N+ GR  + +I+NAGI++ P   + D  I    A N L  ++LT L+    
Sbjct: 67  ETRKLADQVNAIGR-FDAVIHNAGILSGPNRKTPDTGIPAMVAVNVLAPYVLTALI---- 121

Query: 153 KKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN-DESAYNSFGAYGQSKLANILHAKE 211
                   R  R++ +SS  HR   +     D I+      N   AY  SKL  +  A  
Sbjct: 122 -------RRPKRLIYLSSGMHRGGNA---SLDDIDWFNRGENDSPAYSDSKLHVLTLAAA 171

Query: 212 LAKHLKEDGVNITANSLHPGSIVTNL 237
           +A+  K    ++++N++HPG + T +
Sbjct: 172 VARRWK----DVSSNAVHPGWVPTKM 193

Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260

>gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 83.7 bits (208), Expect = 2e-19
 Identities = 69/219 (31%), Positives = 100/219 (45%), Gaps = 33/219 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
            G  A+VTGAS GIG   A  LA +G +V++   +  AG    EA+V EI +   K  A+
Sbjct: 4   EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGA---EALVAEIGALGGKALAV 60

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFL 143
           + DVS   SV +   E  ++   ++IL+NNAGI   +  M + +++ +    TN  G F 
Sbjct: 61  QGDVSDAESVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFN 120

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG--AYGQS 201
           LT  +   M K      R GRI+N+SS                       + G   Y  S
Sbjct: 121 LTKAVARPMMK-----QRSGRIINISSVVGL-----------------MGNPGQANYAAS 158

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
           K   I   K LA+ L      IT N++ PG I T++   
Sbjct: 159 KAGVIGFTKSLARELA--SRGITVNAVAPGFIETDMTDA 195

Length = 248

>gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional

 Score = 84.0 bits (208), Expect = 3e-19
 Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 24/218 (11%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
           I+  G  A+VTGASSG+G   A+VLA  G  V++A R +   K++R  I  E  +A V  
Sbjct: 5   INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHV-- 62

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML--SKDNIELQFATNHLGHF 142
           + LDV+   S++   +   ++   ++IL+NN+G+  +  ++  +  + +  F TN  G F
Sbjct: 63  VSLDVTDYQSIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAF 122

Query: 143 LLTHLLLDTM---KKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
            +   +   M    K A  +   GRI+N++S A       G+R             G Y 
Sbjct: 123 FVAQEVAKRMIARAKGAGNTKPGGRIINIASVA-------GLR--------VLPQIGLYC 167

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            SK A +   + +A      G+N+  N++ PG I T +
Sbjct: 168 MSKAAVVHMTRAMALEWGRHGINV--NAICPGYIDTEI 203

Length = 258

>gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs

 Score = 84.4 bits (209), Expect = 3e-19
 Identities = 62/250 (24%), Positives = 98/250 (39%), Gaps = 56/250 (22%)

Query: 32  AIVTGASSGIGTETA-RVLAL----RGVHVIMAVRNMAAGKDVREAIVKEIPSAKV--DA 84
            +VTGA+SG+G     R+LA       + +I+A RN+   +    A++   P A+V  D 
Sbjct: 4   VLVTGANSGLGLAICERLLAEDDENPELTLILACRNLQRAEAACRALLASHPDARVVFDY 63

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPF--------------------- 123
           + +D+S++ SV   A E   +   L+ L  NAGIM +P                      
Sbjct: 64  VLVDLSNMVSVFAAAKELKKRYPRLDYLYLNAGIMPNPGIDWIGAIKEVLTNPLFAVTNP 123

Query: 124 --------MLSK------DNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVS 169
                   +LS+      D +   F TN  GH+ L   L   + ++        +I+  S
Sbjct: 124 TYKIQAEGLLSQGDKATEDGLGEVFQTNVFGHYYLIRELEPLLCRSDGG----SQIIWTS 179

Query: 170 S-EAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSL 228
           S  A    +S       + D         Y  SK    L +  L +   + GV   +  +
Sbjct: 180 SLNASPKYFS-------LEDIQHLKGPAPYSSSKYLVDLLSLALNRKFNKLGVY--SYVV 230

Query: 229 HPGSIVTNLF 238
           HPG   TNL 
Sbjct: 231 HPGICTTNLT 240

3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 290

>gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional

 Score = 83.4 bits (207), Expect = 4e-19
 Identities = 68/220 (30%), Positives = 95/220 (43%), Gaps = 38/220 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTGA+SGIG E A  LA  G  V++A  N  A     EA+ K     K   + +
Sbjct: 3   KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA--GGKAIGVAM 60

Query: 88  DVSSL----ASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGH 141
           DV+      A +      +   G  ++IL+NNAGI  +A       +  +   A    G 
Sbjct: 61  DVTDEEAINAGIDYAVETF---GG-VDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGA 116

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYG 199
           FL T   L  MK         GRI+N++S  H    S G        ++AY S   G  G
Sbjct: 117 FLTTKAALPIMKA-----QGGGRIINMAS-VHGLVGSAG--------KAAYVSAKHGLIG 162

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +K+     A E A H       +T N++ PG + T L R
Sbjct: 163 LTKVV----ALEGATH------GVTVNAICPGYVDTPLVR 192

Length = 258

>gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 83.2 bits (206), Expect = 4e-19
 Identities = 58/210 (27%), Positives = 83/210 (39%), Gaps = 27/210 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  AIVTG + G+G   AR+L   G  V+++      G+    A   E+         L
Sbjct: 4   KGKVAIVTGGARGLGLAHARLLVAEGAKVVLSDILDEEGQ----AAAAEL-GDAARFFHL 58

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNHLGHFLLT 145
           DV+                  L++L+NNAGI+    + +    E +     N  G FL T
Sbjct: 59  DVTDEDGWTAVVDTAREAFGRLDVLVNNAGILTGGTVETTTLEEWRRLLDINLTGVFLGT 118

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             ++  MK+        G I+N+SS        EG+    + D +      AY  SK A 
Sbjct: 119 RAVIPPMKEAG-----GGSIINMSS-------IEGL----VGDPAL----AAYNASKGAV 158

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVT 235
               K  A      G  I  NS+HPG I T
Sbjct: 159 RGLTKSAALECATQGYGIRVNSVHPGYIYT 188

This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247

>gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11

 Score = 82.1 bits (203), Expect = 1e-18
 Identities = 60/222 (27%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVK-EIPSAKVDAMELDV 89
            AI+TG+SSGIG  TA + A  G  + +  R+    ++ R++ ++  +   K+  +  D+
Sbjct: 5   VAIITGSSSGIGAGTAILFARLGARLALTGRDAERLEETRQSCLQAGVSEKKILLVVADL 64

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--------FATNHLGH 141
           +      +  S   ++   L+IL+NNAGI+A      K   E Q           N    
Sbjct: 65  TEEEGQDRIISTTLAKFGRLDILVNNAGILA------KGGGEDQDIEEYDKVMNLNLRAV 118

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQS 201
             LT L +  + KT      +G IVNVSS               +    ++     Y  S
Sbjct: 119 IYLTKLAVPHLIKT------KGEIVNVSS---------------VAGGRSFPGVLYYCIS 157

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI 243
           K A     +  A  L   GV +  NS+ PG IVT   R  G+
Sbjct: 158 KAALDQFTRCTALELAPKGVRV--NSVSPGVIVTGFHRRMGM 197

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253

>gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs

 Score = 81.2 bits (201), Expect = 2e-18
 Identities = 56/227 (24%), Positives = 83/227 (36%), Gaps = 24/227 (10%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           AI+TG +SGIG  TA++L  +G  V +  RN   G      +    P  K   ++ DV+S
Sbjct: 3   AIITGGASGIGLATAKLLLKKGAKVAILDRNENPG--AAAELQAINPKVKATFVQCDVTS 60

Query: 92  LASVRKFASEYNSQGRPLNILINNAGIMASPFMLS----KDNIELQFATNHLGHFLLTHL 147
              +     +   +   ++ILINNAGI+     L         E     N  G    T+L
Sbjct: 61  WEQLAAAFKKAIEKFGRVDILINNAGILDEKSYLFAGKLPPPWEKTIDVNLTGVINTTYL 120

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
            L  M K        G IVN+ S A         +F              Y  SK   + 
Sbjct: 121 ALHYMDKNKGGKG--GVIVNIGSVA---GLYPAPQFP------------VYSASKHGVVG 163

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFSISCC 254
             + LA  L+     +  N++ PG   T L         +    +  
Sbjct: 164 FTRSLADLLEYK-TGVRVNAICPGFTNTPLLPDLVAKEAEMLPSAPT 209

This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244

>gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 56/216 (25%), Positives = 84/216 (38%), Gaps = 40/216 (18%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A+VT ASSGIG   AR LA  G  V +  RN    +     +      A V A+  D
Sbjct: 1   GKVALVTAASSGIGLAIARALAREGARVAICARNRENLERAASEL--RAGGAGVLAVVAD 58

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAG-IMASPFM-LSKDNIELQFATNHLGHFLLTH 146
           ++    + +   +       ++IL+NNAG     PF  L+ ++    F    L    +  
Sbjct: 59  LTDPEDIDRLVEKAGDAFGRVDILVNNAGGPPPGPFAELTDEDWLEAFDLKLLSVIRIVR 118

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHR-----FAYSEGIRFDKINDESAYNSFGAYGQS 201
            +L  MK+        GRIVN+SS   +        S   R                  +
Sbjct: 119 AVLPGMKE-----RGWGRIVNISSLTVKEPEPNLVLSNVAR------------------A 155

Query: 202 KLANIL--HAKELAKHLKEDGVNITANSLHPGSIVT 235
            L  ++   ++ELA         +T NS+ PG I T
Sbjct: 156 GLIGLVKTLSRELAPD------GVTVNSVLPGYIDT 185

This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs

 Score = 81.1 bits (201), Expect = 2e-18
 Identities = 54/212 (25%), Positives = 79/212 (37%), Gaps = 25/212 (11%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
             ++TG  SGIG   A   A RG  V++   N    ++    + K          + DVS
Sbjct: 1   IVLITGGGSGIGRLLALEFAKRGAKVVILDINEKGAEETANNVRKAGGKVH--YYKCDVS 58

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLL 148
               V + A +   +   + ILINNAG+++      L  + IE  F  N L HF  T   
Sbjct: 59  KREEVYEAAKKIKKEVGDVTILINNAGVVSGKKLLELPDEEIEKTFEVNTLAHFWTTKAF 118

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           L  M +        G IV ++S A                  +      Y  SK A +  
Sbjct: 119 LPDMLER-----NHGHIVTIASVA---------------GLISPAGLADYCASKAAAVGF 158

Query: 209 AKELAKHLKEDGV-NITANSLHPGSIVTNLFR 239
            + L   LK  G   I    + P  I T +F+
Sbjct: 159 HESLRLELKAYGKPGIKTTLVCPYFINTGMFQ 190

17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243

>gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional

 Score = 81.2 bits (201), Expect = 2e-18
 Identities = 63/215 (29%), Positives = 90/215 (41%), Gaps = 26/215 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTGA+ G+G   A  LA  G  V       A  +++  A+  E    +  A+  
Sbjct: 6   AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAAL--EAAGGRAHAIAA 63

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLT 145
           D++  ASV++F     +    L+ L+NNAGI  S     L  D  +     N  G FL+ 
Sbjct: 64  DLADPASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLML 123

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L  +     + S  GRIVN++S+             K          GAY  SK A 
Sbjct: 124 RAALPHL-----RDSGRGRIVNLASDT------ALWGAPK---------LGAYVASKGAV 163

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
           I   + LA+ L   G  IT N++ PG   T    Y
Sbjct: 164 IGMTRSLARELGGRG--ITVNAIAPGLTATEATAY 196

Length = 250

>gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR

 Score = 79.7 bits (197), Expect = 5e-18
 Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 30/211 (14%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+VTGAS GIG E AR LA  G  V + +RN      +  +         V+A+  D  
Sbjct: 2   VALVTGASRGIGIEIARALARDGYRVSLGLRNPEDLAALSASG------GDVEAVPYDAR 55

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLTHLL 148
                R        +   +++L++NAGI   +     S   +E  F+ N +    LT  L
Sbjct: 56  DPEDARALVDALRDRFGRIDVLVHNAGIGRPTTLREGSDAELEAHFSINVIAPAELTRAL 115

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           L  +     + +  GR+V ++S +       G R               Y  SK A    
Sbjct: 116 LPAL-----REAGSGRVVFLNSLS-------GKR--------VLAGNAGYSASKFALRAL 155

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           A  L +   + GV ++A    PG + T + +
Sbjct: 156 AHALRQEGWDHGVRVSAVC--PGFVDTPMAQ 184

This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223

>gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional

 Score = 80.4 bits (199), Expect = 6e-18
 Identities = 50/205 (24%), Positives = 75/205 (36%), Gaps = 32/205 (15%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
            D  G    +TG + GIG  TAR LA  G  V +   + A  K+    +        V  
Sbjct: 1   DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL------GLVVG 54

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHF 142
             LDV+  AS   F     +   P+++L+NNAG+M   PF+             N  G  
Sbjct: 55  GPLDVTDPASFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVI 114

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQ 200
           L + L    M          G +VNV+S A +           +   + Y +      G 
Sbjct: 115 LGSKLAAPRMVP-----RGRGHVVNVASLAGKIP---------VPGMATYCASKHAVVGF 160

Query: 201 SKLANILHAKELAKHLKEDGVNITA 225
           +  A      EL       GV+++ 
Sbjct: 161 TDAA----RLELRGT----GVHVSV 177

Length = 273

>gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase

 Score = 79.2 bits (196), Expect = 9e-18
 Identities = 70/214 (32%), Positives = 96/214 (44%), Gaps = 39/214 (18%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELDV 89
           A+VTGAS GIG   A  LA  G  VI+  R+   G    E +V+E+ +   K   +  DV
Sbjct: 1   ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGA---EEVVEELKAYGVKALGVVCDV 57

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFML--SKDNIELQFATNHLGHFLLTHL 147
           S    V+    E   +  P++IL+NNAGI     ++   +++ +    TN  G F LT  
Sbjct: 58  SDREDVKAVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQA 117

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ-----SK 202
           +L  M K      R GRI+N+SS         G+              G  GQ     SK
Sbjct: 118 VLRIMIK-----QRSGRIINISSVV-------GLM-------------GNAGQANYAASK 152

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTN 236
              I   K LAK L     NIT N++ PG I T+
Sbjct: 153 AGVIGFTKSLAKELA--SRNITVNAVAPGFIDTD 184

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239

>gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated

 Score = 81.4 bits (202), Expect = 1e-17
 Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 34/213 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTGA+ GIG  TA+ LA  G  V++A  +  A +     +       +   +  
Sbjct: 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELG---GPDRALGVAC 477

Query: 88  DVSSLASVR----KFASEYNSQGRPLNILINNAGIMAS-PFM-LSKDNIELQFATNHLGH 141
           DV+  A+V+    + A  +      ++I+++NAGI  S P    S ++    F  N  GH
Sbjct: 478 DVTDEAAVQAAFEEAALAFGG----VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGH 533

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQS 201
           FL+    +  MK  AQ     G IV ++S+               N  +   +FGAYG +
Sbjct: 534 FLVAREAVRIMK--AQGL--GGSIVFIASK---------------NAVNPGPNFGAYGAA 574

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIV 234
           K A +   ++LA  L  DG  I  N ++P ++V
Sbjct: 575 KAAELHLVRQLALELGPDG--IRVNGVNPDAVV 605

Length = 681

>gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs

 Score = 78.2 bits (193), Expect = 3e-17
 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 34/223 (15%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A+VTG +SGIG   A+ LA  G  V++A  +    + V EA        +   ++ D
Sbjct: 1   GKVALVTGGASGIGLAIAKRLAAEGAAVVVADIDPEIAEKVAEA---AQGGPRALGVQCD 57

Query: 89  VSSLASVR----KFASEYNSQGRPLNILINNAGIMAS-PFM-LSKDNIELQFATNHLGHF 142
           V+S A V+    +   E+      L+I+++NAGI  S P    S ++       N  GHF
Sbjct: 58  VTSEAQVQSAFEQAVLEFGG----LDIVVSNAGIATSSPIAETSLEDWNRSMDINLTGHF 113

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
           L++      MK   Q     G IV  +S+               N  +   +  AY  +K
Sbjct: 114 LVSREAFRIMKS--QG--IGGNIVFNASK---------------NAVAPGPNAAAYSAAK 154

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILR 245
            A    A+ LA    EDG  I  N+++P ++      + G+ R
Sbjct: 155 AAEAHLARCLALEGGEDG--IRVNTVNPDAVFRGSKIWEGVWR 195

This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs

 Score = 77.8 bits (192), Expect = 4e-17
 Identities = 61/212 (28%), Positives = 91/212 (42%), Gaps = 28/212 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM-- 85
            G  A+VTGASSGIG   A  LA  G +V   V N  + +D  E +V+EI +    A+  
Sbjct: 2   KGKVALVTGASSGIGKAIAIRLATAGANV---VVNYRSKEDAAEEVVEEIKAVGGKAIAV 58

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFL 143
           + DVS    V         +   L+IL+NNAG+   AS   ++ ++       N  G FL
Sbjct: 59  QADVSKEEDVVALFQSAIKEFGTLDILVNNAGLQGDASSHEMTLEDWNKVIDVNLTGQFL 118

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                +   +    KS  +G+I+N+SS   +  +                    Y  SK 
Sbjct: 119 CAREAIKRFR----KSKIKGKIINMSSVHEKIPWP---------------GHVNYAASKG 159

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
              +  K LA+     G  I  N++ PG+I T
Sbjct: 160 GVKMMTKTLAQEYAPKG--IRVNAIAPGAINT 189

GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase

 Score = 77.8 bits (192), Expect = 5e-17
 Identities = 62/219 (28%), Positives = 92/219 (42%), Gaps = 38/219 (17%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G TA+VTGA+SGIG   AR LA  G +V++        +   +          V  +  D
Sbjct: 1   GKTALVTGAASGIGLAIARALAAAGANVVVNDFGEEGAEAAAKVA--GDAGGSVIYLPAD 58

Query: 89  VSSLASV----RKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHF 142
           V+    +       A+E+      L+IL+NNAGI   +P      ++ +   A      F
Sbjct: 59  VTKEDEIADMIAAAAAEFGG----LDILVNNAGIQHVAPIEEFPPEDWDRIIAVMLTSAF 114

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQ 200
                 L  MKK        GRI+N++S AH    S          +SAY +   G  G 
Sbjct: 115 HTIRAALPHMKKQGW-----GRIINIAS-AHGLVASPF--------KSAYVAAKHGLIGL 160

Query: 201 SKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           +K+     A E+A+H       IT N++ PG + T L  
Sbjct: 161 TKVL----ALEVAEH------GITVNAICPGYVRTPLVE 189

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255

>gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional

 Score = 77.6 bits (192), Expect = 6e-17
 Identities = 50/147 (34%), Positives = 69/147 (46%), Gaps = 27/147 (18%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+VTGASSGIG  TA  LA  G  V    RN A             P   V+ +ELDV+
Sbjct: 6   VALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAA----------PIPGVELLELDVT 55

Query: 91  SLASVRKFASEYNSQ-GRPLNILINNAGIMASPFML------SKDNIELQFATNHLGHFL 143
             ASV+    E  ++ GR +++L+NNAG+     +       S    +  F TN  G   
Sbjct: 56  DDASVQAAVDEVIARAGR-IDVLVNNAGVG----LAGAAEESSIAQAQALFDTNVFGILR 110

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSS 170
           +T  +L  M+         GRI+N+SS
Sbjct: 111 MTRAVLPHMRA-----QGSGRIINISS 132

Length = 270

>gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional

 Score = 77.0 bits (190), Expect = 7e-17
 Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 32/214 (14%)

Query: 27  GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAME 86
             G  A++TG S GIG   A  L   G  V +  R+    ++    +  +     V  + 
Sbjct: 4   LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLA 60

Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLL 144
            DV   A V++      +    L++LI NAG+   A    L+ +   L   TN  G F  
Sbjct: 61  ADVRDEADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYT 120

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSK 202
               +  +K+        G I+N+SS A    ++ G         +AYN+  FG  G S+
Sbjct: 121 IKAAVPALKR------GGGYIINISSLAGTNFFAGG---------AAYNASKFGLVGFSE 165

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTN 236
            A +         L++ G+ ++  ++ PGS+ T+
Sbjct: 166 AAML--------DLRQYGIKVS--TIMPGSVATH 189

Length = 237

>gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR

 Score = 76.4 bits (188), Expect = 1e-16
 Identities = 68/214 (31%), Positives = 90/214 (42%), Gaps = 30/214 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
            G  A+VTGASSGIG  TAR LA  G  V +A R      D  EA+  E+ +   K   +
Sbjct: 2   QGKVALVTGASSGIGEATARALAAEGAAVAIAARR----VDRLEALADELEAEGGKALVL 57

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNHLGHFL 143
           ELDV+    V             L+IL+NNAGIM    +   D  +      TN LG   
Sbjct: 58  ELDVTDEQQVDAAVERTVEALGRLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMY 117

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
            TH  L       +     G IVN+SS A R A                NS   Y  +K 
Sbjct: 118 TTHAALPHHL--LRNK---GTIVNISSVAGRVAVR--------------NS-AVYNATKF 157

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
                ++ L + + E GV +    + PG++ T L
Sbjct: 158 GVNAFSEGLRQEVTERGVRVVV--IEPGTVDTEL 189

CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 63/210 (30%), Positives = 85/210 (40%), Gaps = 32/210 (15%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           GL  +VTG +SGIG   A   A  G  V +   + AA      A    +P AKV A   D
Sbjct: 11  GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAA----LAATAARLPGAKVTATVAD 66

Query: 89  VSSLASVRK-FASEYNSQGRPLNILINNAGIMASPFM----LSKDNIELQFATNHLGHFL 143
           V+  A V + F +     G  L++L+NNAGI A P      ++ +  E   A N  G F 
Sbjct: 67  VADPAQVERVFDTAVERFGG-LDVLVNNAGI-AGPTGGIDEITPEQWEQTLAVNLNGQFY 124

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                +  +K     S   G I+ +SS A R  Y                    Y  SK 
Sbjct: 125 FARAAVPLLK----ASGHGGVIIALSSVAGRLGYPGR---------------TPYAASKW 165

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSI 233
           A +   K LA  L   G  I  N++ PG +
Sbjct: 166 AVVGLVKSLAIELGPLG--IRVNAILPGIV 193

Length = 264

>gnl|CDD|182051 PRK09730, PRK09730, putative NAD(P)-binding oxidoreductase; Provisional

 Score = 75.7 bits (186), Expect = 2e-16
 Identities = 61/212 (28%), Positives = 91/212 (42%), Gaps = 26/212 (12%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHV-IMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV 89
            A+VTG S GIG  TA +LA  G  V +   +N+ A ++V   I +     K   ++ D+
Sbjct: 3   IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQA--GGKAFVLQADI 60

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFM---LSKDNIELQFATNHLGHFLLTH 146
           S    V    +  +    PL  L+NNAGI+ +      L+ + I    +TN  G+FL   
Sbjct: 61  SDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCR 120

Query: 147 LLLDTMKKTAQK-SSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              + +K+ A K     G IVNVSS A R                A   +  Y  SK A 
Sbjct: 121 ---EAVKRMALKHGGSGGAIVNVSSAASRLG--------------APGEYVDYAASKGAI 163

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
                 L+  +   G+ +  N + PG I T +
Sbjct: 164 DTLTTGLSLEVAAQGIRV--NCVRPGFIYTEM 193

Length = 247

>gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 9/148 (6%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI--PSAKVDAME 86
           G   ++TG SSGIG   A+ L   G +VI+  R+ +  ++  E I  E      KV  + 
Sbjct: 1   GKHVLITGGSSGIGKALAKELVKEGANVIIVARSESKLEEAVEEIEAEANASGQKVSYIS 60

Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLL 144
            D+S    V +  ++   +G P ++++N AGI +   F  L+ +  E     N+ G   +
Sbjct: 61  ADLSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFEDLTAEEFERGMDVNYFGSLNV 120

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEA 172
            H +L  MK+      R G IV VSS+A
Sbjct: 121 AHAVLPLMKE-----QRPGHIVFVSSQA 143

These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239

>gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated

 Score = 75.6 bits (186), Expect = 3e-16
 Identities = 66/215 (30%), Positives = 101/215 (46%), Gaps = 39/215 (18%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAI---VKEIPSA--KVDAM 85
            A++TGAS+GIG  +A  LA  G +V+          D+ EA+   V +I S   K  A 
Sbjct: 8   VAVITGASTGIGQASAIALAQEGAYVLAV--------DIAEAVSETVDKIKSNGGKAKAY 59

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ---FATNHLGHF 142
            +D+S    V+ FASE   Q   +++L NNAG+  +   + +  +++     A +  G F
Sbjct: 60  HVDISDEQQVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTF 119

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
           L+T +LL  M +        G I+N SS + + A             S YN+      +K
Sbjct: 120 LMTKMLLPLMMEQG------GSIINTSSFSGQAADL---------YRSGYNA------AK 158

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            A I   K +A     DG  I AN++ PG+I T L
Sbjct: 159 GAVINFTKSIAIEYGRDG--IRANAIAPGTIETPL 191

Length = 272

>gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

 Score = 76.8 bits (189), Expect = 5e-16
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 23/205 (11%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           A VTG + GIG ETAR LA  G HV++A  N+ A + V   I  +  + +  A+++DV+ 
Sbjct: 417 AFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD 476

Query: 92  LASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIE--LQFATNHLGHFLLTHLLL 149
             +V+   ++       ++I++NNAGI  S         E  L       G+FL+     
Sbjct: 477 EQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAF 536

Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             M++        G IV ++S+   +A                    AY  +K A    A
Sbjct: 537 RQMREQGLG----GNIVFIASKNAVYAGKNAS---------------AYSAAKAAEAHLA 577

Query: 210 KELAKHLKEDGVNITANSLHPGSIV 234
           + LA      G+ +  N+++P +++
Sbjct: 578 RCLAAEGGTYGIRV--NTVNPDAVL 600

Length = 676

>gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional

 Score = 74.4 bits (183), Expect = 5e-16
 Identities = 59/208 (28%), Positives = 77/208 (37%), Gaps = 27/208 (12%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDV 89
            A+VTGA  GIG+  AR L   G  VI          KD  E         +V   ELDV
Sbjct: 4   IALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFE--EYGFTEDQVRLKELDV 61

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNHLGHFLLTHL 147
           +      +  +E   +  P++IL+NNAGI          + E      TN    F +T  
Sbjct: 62  TDTEECAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQP 121

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
           L   M +        GRI+N+SS               +N          Y  +K   I 
Sbjct: 122 LFAAMCE-----QGYGRIINISS---------------VNGLKGQFGQTNYSAAKAGMIG 161

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVT 235
             K LA      G  IT N + PG I T
Sbjct: 162 FTKALASEGARYG--ITVNCIAPGYIAT 187

Length = 245

>gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR

 Score = 74.3 bits (183), Expect = 6e-16
 Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 13/147 (8%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  AIVTGA SG G   AR  A  G  V++A  N        E +  +I  A + A++ D
Sbjct: 5   GKVAIVTGAGSGFGEGIARRFAQEGARVVIADINADGA----ERVAADIGEAAI-AIQAD 59

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML---SKDNIELQFATNHLGHFLLT 145
           V+  A V        S+   L+IL+NNAGI      +    ++  +  FA N    +L  
Sbjct: 60  VTKRADVEAMVEAALSKFGRLDILVNNAGITHRNKPMLEVDEEEFDRVFAVNVKSIYLSA 119

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEA 172
             L+  M++        G I+N++S A
Sbjct: 120 QALVPHMEE-----QGGGVIINIASTA 141

This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248

>gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs

 Score = 74.3 bits (183), Expect = 7e-16
 Identities = 54/215 (25%), Positives = 84/215 (39%), Gaps = 34/215 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTGAS GIG   A  LA  G ++++  RN    ++ ++ I KE    +  A   
Sbjct: 4   KGKVALVTGASRGIGFGIASGLAEAGANIVINSRNEEKAEEAQQLIEKE--GVEATAFTC 61

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML--SKDNIELQFATNHLGHFLLT 145
           DVS   +++            ++IL+NNAGI+         +         N  G F ++
Sbjct: 62  DVSDEEAIKAAVEAIEEDFGKIDILVNNAGIIRRHPAEEFPEAEWRDVIDVNLNGVFFVS 121

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK--L 203
             +   M K        G+I+N+ S               +  E       AY  SK  +
Sbjct: 122 QAVARHMIKQGH-----GKIINICS---------------LLSELGGPPVPAYAASKGGV 161

Query: 204 ANILH--AKELAKHLKEDGVNITANSLHPGSIVTN 236
           A +    A E A+H       I  N++ PG   T 
Sbjct: 162 AGLTKALATEWARH------GIQVNAIAPGYFATE 190

Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional

 Score = 74.4 bits (183), Expect = 7e-16
 Identities = 65/219 (29%), Positives = 102/219 (46%), Gaps = 39/219 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
           +   AIVTGAS GIG   AR LA  G  V +   N A      + +V EI +A  +  A+
Sbjct: 4   SNKVAIVTGASRGIGAAIARRLAADGFAVAV---NYAGSAAAADELVAEIEAAGGRAIAV 60

Query: 86  ELDVSSLASVRK-FASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ-----FATNHL 139
           + DV+  A+V + F +   + GR +++L+NNAG+M    + +  + +L+      ATN  
Sbjct: 61  QADVADAAAVTRLFDAAETAFGR-IDVLVNNAGVM---PLGTIADFDLEDFDRTIATNLR 116

Query: 140 GHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
           G F+        +++ A+   + GRI+N+S+                        +G Y 
Sbjct: 117 GAFV-------VLREAARHLGQGGRIINLSTSVIALPLP---------------GYGPYA 154

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF 238
            SK A       LA  L+  G  IT N++ PG + T LF
Sbjct: 155 ASKAAVEGLVHVLANELR--GRGITVNAVAPGPVATELF 191

Length = 245

>gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional

 Score = 74.2 bits (183), Expect = 7e-16
 Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 32/212 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A++TGASSGIG  TA   A  G  + +  R+  A + +   +       K  A  +D+S
Sbjct: 8   RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST--GVKAAAYSIDLS 65

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNHLGHFLLTHLL 148
           +  ++    +E   Q    ++LINNAG+  +  +L     + Q     N    F     +
Sbjct: 66  NPEAIAPGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAV 125

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF---GAYGQSKLAN 205
           L  M+         G I+NVSS A                  A N+F   GAY  SK A 
Sbjct: 126 LPGMRA-----RGGGLIINVSSIA------------------ARNAFPQWGAYCVSKAAL 162

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
               K LA+  +  G  I   ++  G++ T L
Sbjct: 163 AAFTKCLAEEERSHG--IRVCTITLGAVNTPL 192

Length = 241

>gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4

 Score = 73.7 bits (181), Expect = 7e-16
 Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 36/225 (16%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           A+VTGAS GIG  TAR+L   G  V +  R+      +  A  +E+    V  +  DV  
Sbjct: 3   ALVTGASRGIGEATARLLHAEGYRVGICARD---EARLAAAAAQELE--GVLGLAGDVRD 57

Query: 92  LASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTHLLL 149
            A VR+           L+ L+NNAG+  M     L+ +   L   TN  G F   H   
Sbjct: 58  EADVRRAVDAMEEAFGGLDALVNNAGVGVMKPVEELTPEEWRLVLDTNLTGAFYCIHKAA 117

Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKLANIL 207
             + +        G IVNV S A + A+  G         +AYN+  FG  G S+ A + 
Sbjct: 118 PALLRRGG-----GTIVNVGSLAGKNAFKGG---------AAYNASKFGLLGLSEAAML- 162

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFSIS 252
                   L+E  + +   ++ PGS+ T    + G   G  + ++
Sbjct: 163 -------DLREANIRVV--NVMPGSVDTG---FAGSPEGQAWKLA 195

This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226

>gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs

 Score = 74.3 bits (183), Expect = 9e-16
 Identities = 65/223 (29%), Positives = 85/223 (38%), Gaps = 33/223 (14%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
               G  AIVTG S GIG   AR LA  G  V +   +    ++  E + K+    K  A
Sbjct: 4   FSLKGKVAIVTGGSRGIGLAIARALAEAGADVAIIYNSAPRAEEKAEELAKKYGV-KTKA 62

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML--SKDNIELQFATNHLGHF 142
            + DVSS  SV K   +       ++ILI NAGI      L  + +        N  G F
Sbjct: 63  YKCDVSSQESVEKTFKQIQKDFGKIDILIANAGITVHKPALDYTYEQWNKVIDVNLNGVF 122

Query: 143 LLTHLLLDTMKKTAQKS-----SREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGA 197
                     KK  + S     S  G IVN                     ++AYN+   
Sbjct: 123 NCAQAAAKIFKKQGKGSLIITASMSGTIVNRPQP-----------------QAAYNA--- 162

Query: 198 YGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
              SK A I  AK LA    +    I  NS+ PG I T+L  +
Sbjct: 163 ---SKAAVIHLAKSLAVEWAKYF--IRVNSISPGYIDTDLTDF 200

NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252

>gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

 Score = 73.4 bits (181), Expect = 1e-15
 Identities = 66/222 (29%), Positives = 92/222 (41%), Gaps = 43/222 (19%)

Query: 24  GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD 83
            +D +G T  VTGA+ GIG   A      G  VI        G D      ++ P     
Sbjct: 3   AMDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVI--------GFDQAFLTQEDYP---FA 51

Query: 84  AMELDVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGH 141
              LDVS  A+V +      ++  PL++L+N AGI  M +   LS ++ +  FA N  G 
Sbjct: 52  TFVLDVSDAAAVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGA 111

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQS 201
           F L   ++   +   Q+S   G IV V S A   A+   I               AYG S
Sbjct: 112 FNLFRAVMPQFR--RQRS---GAIVTVGSNA---AHVPRI------------GMAAYGAS 151

Query: 202 KLANILHAK----ELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           K A    AK    ELA +       +  N + PGS  T++ R
Sbjct: 152 KAALTSLAKCVGLELAPY------GVRCNVVSPGSTDTDMQR 187

Length = 252

>gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 38/214 (17%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI--PSAKVDAMELDV 89
            ++TGASSGIG   AR  A  G +V +A R      D  + +  E+  P+  V+   LDV
Sbjct: 1   VLITGASSGIGRALAREFAKAGYNVALAARR----TDRLDELKAELLNPNPSVEVEILDV 56

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGI-MASPF--MLSKDNIELQFATNHLGHFLLTH 146
           +     +   +E  ++   L+++I NAG+   +    +  K   E    TN LG   +  
Sbjct: 57  TDEERNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSFKAFRET-IDTNLLGAAAILE 115

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG---AYGQSKL 203
             L   +  A+     G +V +SS A                  A        AY  SK 
Sbjct: 116 AALPQFR--AKGR---GHLVLISSVA------------------ALRGLPGAAAYSASKA 152

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           A    A+ L   +K+ G+ +T   ++PG I T L
Sbjct: 153 ALSSLAESLRYDVKKRGIRVT--VINPGFIDTPL 184

These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs

 Score = 73.3 bits (180), Expect = 2e-15
 Identities = 65/210 (30%), Positives = 87/210 (41%), Gaps = 33/210 (15%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
            IVTGA+ GIG   AR L   G  VI          D    ++       +    LDV+ 
Sbjct: 1   VIVTGAAQGIGRAVARHLLQAGATVI--------ALD-LPFVLLLEYGDPLRLTPLDVAD 51

Query: 92  LASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTHLLL 149
            A+VR+  S   ++  P++ L+N AG+    +   LS ++ E  FA N  G F   +LL 
Sbjct: 52  AAAVREVCSRLLAEHGPIDALVNCAGVLRPGATDPLSTEDWEQTFAVNVTGVF---NLLQ 108

Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
                   K  R G IV V+S A   A+   I            S  AYG SK A    +
Sbjct: 109 AVAPHM--KDRRTGAIVTVASNA---AHVPRI------------SMAAYGASKAALASLS 151

Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           K L   L   GV    N + PGS  T + R
Sbjct: 152 KCLGLELAPYGVR--CNVVSPGSTDTAMQR 179

2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244

>gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional

 Score = 72.9 bits (179), Expect = 2e-15
 Identities = 49/209 (23%), Positives = 77/209 (36%), Gaps = 28/209 (13%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G    +TG   G+G  TA  LA RG  V +  R  A         +  +P+  +    +D
Sbjct: 7   GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT----LPGVPADALRIGGID 62

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLTH 146
           +    + R+   E N Q   L+ L+N AG      +     D  +  +  N       + 
Sbjct: 63  LVDPQAARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASK 122

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
             L  +  +       GRIVN+ + A        ++        A    GAY  +K    
Sbjct: 123 AALPALTASGG-----GRIVNIGAGA-------ALK--------AGPGMGAYAAAKAGVA 162

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVT 235
              + LA  L + G  IT N++ P  I T
Sbjct: 163 RLTEALAAELLDRG--ITVNAVLPSIIDT 189

Length = 239

>gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 60/218 (27%), Positives = 85/218 (38%), Gaps = 42/218 (19%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM 85
           D +G + +VTGASSGIG   A  LA RG  V+ A RN AA   +             + +
Sbjct: 6   DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET-------GCEPL 58

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFL 143
            LDV   A++R   +         + L+N AGI  + S   ++ +  +   A N  G  L
Sbjct: 59  RLDVGDDAAIRAALAAAG----AFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAAL 114

Query: 144 LTHLLLDTMKKTAQKSSREGR---IVNVSSEA-HRFAYSEGIRFDKINDESAYNSFGAYG 199
                    +  A+     GR   IVNVSS+A                         AY 
Sbjct: 115 -------VARHVARAMIAAGRGGSIVNVSSQAALV----------------GLPDHLAYC 151

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            SK A     + L   L   G  I  NS++P   +T +
Sbjct: 152 ASKAALDAITRVLCVELGPHG--IRVNSVNPTVTLTPM 187

Length = 245

>gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional

 Score = 72.4 bits (178), Expect = 5e-15
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 17/151 (11%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A++TGA+SGIG   A      G  V++A    A  +     I          A+ LD
Sbjct: 6   GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLD 60

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTH 146
           V+   S+ +  +    +   ++IL NNA +  MA    +S+D+ +  FA N  G F    
Sbjct: 61  VTRQDSIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFF--- 117

Query: 147 LLLDTMKKTAQ---KSSREGRIVNVSSEAHR 174
                M+  A+   +  R G+I+N++S+A R
Sbjct: 118 ----LMQAVARHMVEQGRGGKIINMASQAGR 144

Length = 257

>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional

 Score = 72.5 bits (178), Expect = 5e-15
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 15/154 (9%)

Query: 23  QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV 82
           Q +D TG   ++TGASSGIG   A   A RG  V+   R     +D+ +A+   I  A  
Sbjct: 34  QPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVAR----REDLLDAVADRITRAGG 89

Query: 83  DAMEL--DVSSLASVRKFASEYNSQGRPLNILINNAG-IMASPFMLSKD---NIELQFAT 136
           DAM +  D+S L +V    ++   +   ++ILINNAG  +  P   S D   ++E     
Sbjct: 90  DAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVL 149

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
           N+     L   L   M +       +G I+NV++
Sbjct: 150 NYYAPLRLIRGLAPGMLE-----RGDGHIINVAT 178

Length = 293

>gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

 Score = 71.7 bits (176), Expect = 6e-15
 Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 15/147 (10%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           TG T ++TG +SGIG   A+     G  VI+  RN     + +     E P   +     
Sbjct: 4   TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAK----AENPE--IHTEVC 57

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDN----IELQFATNHLGHFL 143
           DV+   S R+       +   LN+LINNAGI  +  +   ++     E + ATN L    
Sbjct: 58  DVADRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIR 117

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSS 170
           LT LLL  + +       E  I+NVSS
Sbjct: 118 LTALLLPHLLR-----QPEATIINVSS 139

Length = 245

>gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs

 Score = 71.7 bits (176), Expect = 7e-15
 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 33/219 (15%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
           +D  G  A+VTGA  GIG  T + LA  G  V+   R  A   D+ +++V+E P   ++ 
Sbjct: 3   LDFAGKRALVTGAGKGIGRATVKALAKAGARVVAVSRTQA---DL-DSLVRECPG--IEP 56

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHF 142
           + +D+S   +  +      S G P+++L+NNA + +  PF+ ++K+  +  F  N     
Sbjct: 57  VCVDLSDWDATEE---ALGSVG-PVDLLVNNAAVAILQPFLEVTKEAFDRSFDVNVRAVI 112

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
            ++ ++   M          G IVNVSS+A + A         + + + Y S  A     
Sbjct: 113 HVSQIVARGMIARGVP----GSIVNVSSQASQRA---------LTNHTVYCSTKA-ALDM 158

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN 241
           L  ++ A EL  H       I  NS++P  ++T++ R N
Sbjct: 159 LTKVM-ALELGPH------KIRVNSVNPTVVMTDMGRDN 190

Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244

>gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8

 Score = 71.2 bits (175), Expect = 9e-15
 Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 30/220 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
                ++TGA+  IG    + L   G  +I+A  N  A + ++E +   +   +V A+EL
Sbjct: 1   EDKIILITGAAGLIGKAFCKALLSAGARLILADINAPALEQLKEEL-TNLYKNRVIALEL 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI----MASPFM-LSKDNIELQFATNHLGHF 142
           D++S  S+++    Y  +   ++ILINNA        S F     +        N  G F
Sbjct: 60  DITSKESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYEQWNEVLNVNLGGAF 119

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA-----YSEGIRFDKINDESAYNSFGA 197
           L +   +   KK       +G I+N++S     A     Y     +  +           
Sbjct: 120 LCSQAFIKLFKK-----QGKGSIINIASIYGVIAPDFRIYENTQMYSPVE---------- 164

Query: 198 YGQSKLANILH-AKELAKHLKEDGVNITANSLHPGSIVTN 236
           Y   K A I+H  K LAK+       I  N++ PG I+ N
Sbjct: 165 YSVIK-AGIIHLTKYLAKYYA--DTGIRVNAISPGGILNN 201

This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional

 Score = 71.2 bits (175), Expect = 9e-15
 Identities = 71/219 (32%), Positives = 99/219 (45%), Gaps = 39/219 (17%)

Query: 22  TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAK 81
           T   D TG  A+VTGAS GIG   A++LA +G HVI++ R +   + V +AIV     A+
Sbjct: 1   TNLFDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAE 60

Query: 82  VDAMEL-DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPF---MLSKDNIELQ--FA 135
             A  + ++  + ++  FA      GR L+IL+NNA   A+P+   +L  D    Q    
Sbjct: 61  ALACHIGEMEQIDAL--FAHIRERHGR-LDILVNNAA--ANPYFGHILDTDLGAFQKTVD 115

Query: 136 TNHLGHFLLTHLLLDTMKKTAQKSSRE---GRIVNVSSEAHRFAYSEGIRFDKINDESAY 192
            N  G+F         M   A K  +E   G IVNV+S               +N  S  
Sbjct: 116 VNIRGYFF--------MSVEAGKLMKEQGGGSIVNVAS---------------VNGVSPG 152

Query: 193 NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPG 231
           +  G Y  +K A I   K  AK     G  I  N+L PG
Sbjct: 153 DFQGIYSITKAAVISMTKAFAKECAPFG--IRVNALLPG 189

Length = 252

>gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 26/222 (11%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A++TGA  GIG   A  LA  GV+V +  R     K V E +       KV     
Sbjct: 6   QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY--GVKVVIATA 63

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLT 145
           DVS    V     +  ++   ++ILINNAGI     F+ L     E     N +G +  T
Sbjct: 64  DVSDYEEVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYAT 123

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             +L +M        + G I+N+SS A       G +       +A  S  AY  SK   
Sbjct: 124 RAVLPSM-----IERQSGDIINISSTA-------GQK------GAAVTS--AYSASKFGV 163

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGD 247
           +   + L + +++  + +TA  L P ++ T++    G+  G+
Sbjct: 164 LGLTESLMQEVRKHNIRVTA--LTPSTVATDMAVDLGLTDGN 203

Length = 239

>gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 17/149 (11%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+VTGASSGIG  TAR LA +G  V  A R +          ++++ S  V  + LDV+
Sbjct: 5   VALVTGASSGIGKATARRLAAQGYTVYGAARRVDK--------MEDLASLGVHPLSLDVT 56

Query: 91  SLASVRK-FASEYNSQGRPLNILINNAG--IMASPFMLSKDNIELQFATNHLGHFLLTHL 147
             AS++    +    +GR +++L+NNAG     +   +  D    QF  N  G   LT L
Sbjct: 57  DEASIKAAVDTIIAEEGR-IDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQL 115

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFA 176
           +L  M+       R GRI+N+SS   +  
Sbjct: 116 VLPHMRA-----QRSGRIINISSMGGKIY 139

Length = 273

>gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional

 Score = 69.4 bits (170), Expect = 5e-14
 Identities = 63/208 (30%), Positives = 88/208 (42%), Gaps = 25/208 (12%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELDV 89
            ++TG S G+G   A  LA  G  VI+   +   G+   +A+   I +A  K   +  DV
Sbjct: 9   VLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDV 68

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLTHL 147
              A+ R        +   L+IL+NNAGI   + F  LS +  +     N  G F +T  
Sbjct: 69  RDFAATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQA 128

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
            L  M +      R GRIVN++S A       G+R               Y  SK   I 
Sbjct: 129 ALPPMIRA----RRGGRIVNIASVA-------GVR--------GNRGQVNYAASKAGLIG 169

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVT 235
             K LA  L   G  IT N++ PG+I T
Sbjct: 170 LTKTLANELAPRG--ITVNAVAPGAINT 195

Length = 249

>gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional

 Score = 68.9 bits (169), Expect = 6e-14
 Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 8/149 (5%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A+VTGA+ GIG   AR  A  G  V +A  + A  +    AI +++  A+V A+  D
Sbjct: 7   GKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPAD 66

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTH 146
           V+  ASV    +       PL++L+NNAGI   A P  ++ ++    FA +  G +    
Sbjct: 67  VTDAASVAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCR 126

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRF 175
            +L  M    +     G IVN++S  H F
Sbjct: 127 AVLPGM--VERGR---GSIVNIAS-THAF 149

Length = 260

>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated

 Score = 70.4 bits (173), Expect = 7e-14
 Identities = 65/211 (30%), Positives = 94/211 (44%), Gaps = 27/211 (12%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
            +VTGA SGIG ETA   A  G  V+ +  + AA +   E I      A   A  +DVS 
Sbjct: 318 VVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELI--RAAGAVAHAYRVDVSD 375

Query: 92  LASVRKFASEYNSQ-GRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLTHLL 148
             ++  FA    ++ G P +I++NNAGI MA  F+  S ++ +     N  G      L 
Sbjct: 376 ADAMEAFAEWVRAEHGVP-DIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLF 434

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
              M +        G IVNV+S A   AY+               S  AY  SK A ++ 
Sbjct: 435 GRQMVERGTG----GHIVNVASAA---AYAPS------------RSLPAYATSKAAVLML 475

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           ++ L   L   G+ +TA  + PG + TN+  
Sbjct: 476 SECLRAELAAAGIGVTA--ICPGFVDTNIVA 504

Length = 582

>gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional

 Score = 68.6 bits (168), Expect = 8e-14
 Identities = 51/144 (35%), Positives = 66/144 (45%), Gaps = 18/144 (12%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           + ++TG SSGIG E A  L  RG  V+ A R        +   V  + S     + LD+ 
Sbjct: 4   SVLITGCSSGIGLEAALELKRRGYRVLAACR--------KPDDVARMNSLGFTGILLDLD 55

Query: 91  SLASVRKFASEYN--SQGRPLNILINNAGI-MASPF-MLSKDNIELQFATNHLGHFLLTH 146
              SV + A E    +  R L  L NNAG  +  P   +S+  +E QF+TN  G   LT 
Sbjct: 56  DPESVERAADEVIALTDNR-LYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTM 114

Query: 147 LLLDTMKKTAQKSSREGRIVNVSS 170
           LLL  M         EGRIV  SS
Sbjct: 115 LLLPAM-----LPHGEGRIVMTSS 133

Length = 256

>gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional

 Score = 68.6 bits (168), Expect = 8e-14
 Identities = 62/213 (29%), Positives = 90/213 (42%), Gaps = 32/213 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
               AIVTGA+ GIG   A  LA  G  V++A  N    + V + IV +  +A   A+++
Sbjct: 5   DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAI--AVQV 62

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSK---DNIELQFATNHLGHF 142
           DVS   S +  A    S    ++ L+NNA I       +L     D  +   + N  G  
Sbjct: 63  DVSDPDSAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGAL 122

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
           + T  +   M K        G IVN SS A  + YS                   YG +K
Sbjct: 123 VCTRAVYKHMAKRGG-----GAIVNQSSTA-AWLYS-----------------NFYGLAK 159

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           +      ++LA+ L   G+NI  N++ PG I T
Sbjct: 160 VGLNGLTQQLAREL--GGMNIRVNAIAPGPIDT 190

Length = 250

>gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional

 Score = 68.9 bits (169), Expect = 8e-14
 Identities = 60/217 (27%), Positives = 90/217 (41%), Gaps = 33/217 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL--D 88
             I+TGAS GIG   A  LA  G  +++A RN         ++ +E+     +A+ +  D
Sbjct: 3   VVIITGASEGIGRALAVRLARAGAQLVLAARNETR----LASLAQELADHGGEALVVPTD 58

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFMLSKDNIELQ--FATNHLGHFLLT 145
           VS   +  +      ++   ++IL+NNAGI M S F    D    +     N+LG    T
Sbjct: 59  VSDAEACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCT 118

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
           H  L  +K         G+IV VSS A             +   S Y +      SK A 
Sbjct: 119 HAALPHLKA------SRGQIVVVSSLAG---------LTGVPTRSGYAA------SKHAL 157

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG 242
                 L   L +DGV +T   + PG + T++ R   
Sbjct: 158 HGFFDSLRIELADDGVAVTV--VCPGFVATDI-RKRA 191

Length = 263

>gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional

 Score = 68.9 bits (169), Expect = 9e-14
 Identities = 61/218 (27%), Positives = 86/218 (39%), Gaps = 38/218 (17%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           + ++TG SSGIG   AR L   G  V    R        +E  V  + +  ++A +LD +
Sbjct: 6   SILITGCSSGIGAYCARALQSDGWRVFATCR--------KEEDVAALEAEGLEAFQLDYA 57

Query: 91  SLASVRKFASEY--NSQGRPLNILINNAGIMASPFM---LSKDNIELQFATNHLGHFLLT 145
              S+    ++    S GR L+ L NN G    P     L  + +  QF  N  G   LT
Sbjct: 58  EPESIAALVAQVLELSGGR-LDALFNN-GAYGQPGAVEDLPTEALRAQFEANFFGWHDLT 115

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             ++  M+K  Q     GRIV  SS               I         GAY  SK A 
Sbjct: 116 RRVIPVMRKQGQ-----GRIVQCSS---------------ILGLVPMKYRGAYNASKFA- 154

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI 243
            +    L   ++  G  I  + + PG I T  FR N +
Sbjct: 155 -IEGLSLTLRMELQGSGIHVSLIEPGPIETR-FRANAL 190

Length = 277

>gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional

 Score = 67.9 bits (166), Expect = 1e-13
 Identities = 71/211 (33%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            I+TGAS GIG  TA + A RG  V +  +RN  A + V +AI ++   A   A+  DV+
Sbjct: 5   MIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEAL--AVAADVA 62

Query: 91  SLASV-RKFASEYNSQGRPLNILINNAGIMASPFMLSK-DNIELQ--FATNHLGHFLLTH 146
             A V R F +     GR L+ L+NNAGI+ +   L + D   L   FATN +G FL   
Sbjct: 63  DEADVLRLFEAVDRELGR-LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAR 121

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
             +  M  + +   R G IVNVSS A R                +   +  Y  SK A  
Sbjct: 122 EAVKRM--STRHGGRGGAIVNVSSMAARLG--------------SPGEYIDYAASKGAID 165

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
                LAK +  +G+ +  N++ PG I T +
Sbjct: 166 TMTIGLAKEVAAEGIRV--NAVRPGVIYTEI 194

Length = 248

>gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs

 Score = 67.5 bits (165), Expect = 2e-13
 Identities = 64/217 (29%), Positives = 90/217 (41%), Gaps = 37/217 (17%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAME 86
           G TA+VTG + GIG      LA  G  V    RN        +  + E      KV+   
Sbjct: 6   GKTALVTGGTKGIGYAIVEELAGLGAEVYTCARNQKE----LDECLTEWREKGFKVEGSV 61

Query: 87  LDVSSLASVRKFA-SEYNSQGRPLNILINNAG--IMASPFMLSKDNIELQFATNHLGHFL 143
            DVSS +  ++   +  +  G  LNIL+NNAG  I       ++++  L  +TN    + 
Sbjct: 62  CDVSSRSERQELMDTVASHFGGKLNILVNNAGTNIRKEAKDYTEEDYSLIMSTNFEAAYH 121

Query: 144 LT---HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ 200
           L+   H LL        K+S  G IV +SS A       G+         A  S   YG 
Sbjct: 122 LSRLAHPLL--------KASGNGNIVFISSVA-------GV--------IAVPSGAPYGA 158

Query: 201 SKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           +K A     + LA    +D  NI  N++ P  I T L
Sbjct: 159 TKGALNQLTRSLACEWAKD--NIRVNAVAPWVIATPL 193

This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251

>gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 56/203 (27%), Positives = 81/203 (39%), Gaps = 26/203 (12%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
            +VTGA+ GIG   AR LA  G  V    RN    + +                +LDV+ 
Sbjct: 1   VLVTGAAQGIGYAVARALAEAGARVAAVDRN--FEQLLELVADLRRYGYPFATYKLDVAD 58

Query: 92  LASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTHLLL 149
            A+V +       +  P+++L+N AGI  + +   LS ++ +  FA N  G F ++  + 
Sbjct: 59  SAAVDEVVQRLEREYGPIDVLVNVAGILRLGAIDSLSDEDWQATFAVNTFGVFNVSQAVS 118

Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             MK   ++S   G IV V S A                        AY  SK A  +  
Sbjct: 119 PRMK--RRRS---GAIVTVGSNAANVPRM---------------GMAAYAASKAALTMLT 158

Query: 210 KELAKHLKEDGVNITANSLHPGS 232
           K L   L   G  I  N + PGS
Sbjct: 159 KCLGLELAPYG--IRCNVVSPGS 179

Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250

>gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 36/213 (16%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            AIVT + SGIG   A +LA +G  + +   +   G       V+     + +  +LD+S
Sbjct: 4   VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSH-GVRAEIRQLDLS 62

Query: 91  SL----ASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLL 144
            L     ++ K        GR +++L+NNAG M  +PF+ +  D     F  +  G FL 
Sbjct: 63  DLPEGAQALDKLIQRL---GR-IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLC 118

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSK 202
           + +    M     K  + GRI+N++S  H      G         SAY +      G +K
Sbjct: 119 SQIAARHMV----KQGQGGRIINITS-VHEHTPLPG--------ASAYTAAKHALGGLTK 165

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
                 A EL +H       I  N++ PG+I T
Sbjct: 166 AM----ALELVEH------GILVNAVAPGAIAT 188

Length = 256

>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated

 Score = 66.8 bits (164), Expect = 3e-13
 Identities = 56/218 (25%), Positives = 79/218 (36%), Gaps = 49/218 (22%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVH-VIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           G   +VTGA+ GIG      L  RG   V  A R+  +  D+   +V          ++L
Sbjct: 6   GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPRVV---------PLQL 56

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASP-FMLSK--DNIELQFATNHLGHFLL 144
           DV+  ASV   A         + IL+NNAGI  +   +L    D +  +  TN+ G   +
Sbjct: 57  DVTDPASVAAAA----EAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAM 112

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
                  +          G IVNV S      +                + G Y  SK A
Sbjct: 113 ARAFAPVLAANGG-----GAIVNVLSVLSWVNFP---------------NLGTYSASKAA 152

Query: 205 -----NILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
                  L A ELA              +HPG I T++
Sbjct: 153 AWSLTQALRA-ELAPQ------GTRVLGVHPGPIDTDM 183

Length = 238

>gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 29/212 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +G  A+VTG +SGIG   A + A +G  V +  R+     +V   ++          +  
Sbjct: 14  SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRS-EDVAEVAAQLL----GGNAKGLVC 68

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLT 145
           DVS   SV    +   S    ++IL+N+AG+  +A    +S+++ +     N  G FL+ 
Sbjct: 69  DVSDSQSVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMA 128

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             +   M          G+IVN++S+A   A    +               AY  SK   
Sbjct: 129 QAVGRHMIAAGG-----GKIVNLASQAGVVALERHV---------------AYCASKAGV 168

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           +   K LA  L+     IT N++ P  ++T L
Sbjct: 169 VGMTKVLA--LEWGPYGITVNAISPTVVLTEL 198

Length = 255

>gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 59/219 (26%), Positives = 81/219 (36%), Gaps = 34/219 (15%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAG-----KDVREAI---VKEIPSA 80
           G  A VTGAS GIG   A  LA  G  V++A +  + G     K +   I    +EI +A
Sbjct: 3   GKVAFVTGASRGIGRAIALRLAKAGATVVVAAKTASEGDNGSAKSLPGTIEETAEEIEAA 62

Query: 81  KVDAM--ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNH 138
              A+   +DV     VR        Q   L+IL+NNAG +    +              
Sbjct: 63  GGQALPIVVDVRDEDQVRALVEATVDQFGRLDILVNNAGAIWLSLVEDTPAKRFDLMQRV 122

Query: 139 L--GHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG 196
              G +LL+   L  M K  Q     G I+N+S            R D            
Sbjct: 123 NLRGTYLLSQAALPHMVKAGQ-----GHILNISPP----LSLRPARGDV----------- 162

Query: 197 AYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           AY   K         LA  L+  G+ +  NSL P + + 
Sbjct: 163 AYAAGKAGMSRLTLGLAAELRRHGIAV--NSLWPSTAIE 199

This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246

>gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs

 Score = 66.2 bits (162), Expect = 6e-13
 Identities = 55/207 (26%), Positives = 81/207 (39%), Gaps = 27/207 (13%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           A+VTG S GIG   A  LA RG  V++  R +  A  +V   I  E    K   +  DVS
Sbjct: 1   ALVTGGSRGIGKAIALRLAERGADVVINYRKSKDAAAEVAAEI--EELGGKAVVVRADVS 58

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLTHLL 148
               V +  +    +   L++L++NA   A  P   L+  + + +  TN           
Sbjct: 59  QPQDVEEMFAAVKERFGRLDVLVSNAAAGAFRPLSELTPAHWDAKMNTNLKALVHCAQQA 118

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
              M++        GRIV +SS     A                 ++ A G +K A    
Sbjct: 119 AKLMRE-----RGGGRIVAISSLGSIRALP---------------NYLAVGTAKAALEAL 158

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVT 235
            + LA  L   G  I  N++ PG I T
Sbjct: 159 VRYLAVELGPRG--IRVNAVSPGVIDT 183

This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|180822 PRK07069, PRK07069, short chain dehydrogenase; Validated

 Score = 65.9 bits (161), Expect = 8e-13
 Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 29/220 (13%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD-AMELDVS 90
           A +TGA+ G+G   AR +A +G  V +   N AAG D   A +       V  A   DV+
Sbjct: 2   AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVT 61

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTHLL 148
             A  +   ++       L++L+NNAG+    +   +  D      A N    FL     
Sbjct: 62  DEAQWQALLAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHA 121

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           L  +     ++S+   IVN+SS A         +        A   + AY  SK A    
Sbjct: 122 LPYL-----RASQPASIVNISSVA-------AFK--------AEPDYTAYNASKAAVASL 161

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDF 248
            K +A      G+++  NS+HP  I T      GI+   F
Sbjct: 162 TKSIALDCARRGLDVRCNSIHPTFIRT------GIVDPIF 195

Length = 251

>gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional

 Score = 65.9 bits (161), Expect = 9e-13
 Identities = 61/212 (28%), Positives = 89/212 (41%), Gaps = 26/212 (12%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G TA++TGAS GIG   AR     G  V++  R+  A    R+ + +E P  +V  +  D
Sbjct: 9   GQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAAD 68

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML--SKDNIELQFATNHLGHFLLTH 146
           VS     R            L+IL+NNAG       +  ++D     F TN    F L+ 
Sbjct: 69  VSDDEDRRAILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSR 128

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGA-YGQSKLAN 205
                +K+ A  +     IVN+ S +       G+          +   GA YG +K A 
Sbjct: 129 YAHPLLKQHASSA-----IVNIGSVS-------GL---------THVRSGAPYGMTKAAL 167

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           +   + LA    EDG  I  N++ P  I T L
Sbjct: 168 LQMTRNLAVEWAEDG--IRVNAVAPWYIRTPL 197

Length = 257

>gnl|CDD|181120 PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 10/157 (6%)

Query: 22  TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA- 80
           T   D +G  A+VTGA++G+G   A  LA  G  V+  V ++A+  D    ++ EI +A 
Sbjct: 5   TNTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVV--VNDVASALDA-SDVLDEIRAAG 61

Query: 81  -KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASP--FMLSKDNIELQFATN 137
            K  A+  D+S  A+  +  +     G  L+I++NNAGI      F +S +  +   A +
Sbjct: 62  AKAVAVAGDISQRATADELVATAVGLGG-LDIVVNNAGITRDRMLFNMSDEEWDAVIAVH 120

Query: 138 HLGHFLLTHLLLDTMKKTAQKS--SREGRIVNVSSEA 172
             GHFLLT       +  A+ +     GRIVN SSEA
Sbjct: 121 LRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEA 157

Length = 306

>gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 62/216 (28%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIM-AVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           G  A+VTG++SGIG   AR LA  G ++++    + A  + VR  +  +    KV     
Sbjct: 2   GKVALVTGSTSGIGLGIARALAAAGANIVLNGFGDAAEIEAVRAGLAAK-HGVKVLYHGA 60

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLT 145
           D+S  A++    +    Q   ++IL+NNAGI  +A       +  +   A N    F  T
Sbjct: 61  DLSKPAAIEDMVAYAQRQFGGVDILVNNAGIQHVAPIEDFPTEKWDAIIALNLSAVFHTT 120

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKL 203
            L L  MKK        GRI+N++S  H    S          +SAY +   G  G +K+
Sbjct: 121 RLALPHMKKQGW-----GRIINIAS-VHGLVASAN--------KSAYVAAKHGVVGLTKV 166

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                A E A         +T N++ PG ++T L  
Sbjct: 167 V----ALETAGT------GVTCNAICPGWVLTPLVE 192

DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258

>gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 57/214 (26%), Positives = 85/214 (39%), Gaps = 27/214 (12%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELD 88
            AIVTGAS GIG   A  LA RG   I          D    +V E+ +A  +    + D
Sbjct: 3   VAIVTGASRGIGRAIATELAARG-FDIAINDLPDD--DQATEVVAEVLAAGRRAIYFQAD 59

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASP----FMLSKDNIELQFATNHLGHFLL 144
           +  L+       +       L+ L+NNAGI   P      L++D+ +   A N  G F L
Sbjct: 60  IGELSDHEALLDQAWEDFGRLDCLVNNAGIAVRPRGDLLDLTEDSFDRLIAINLRGPFFL 119

Query: 145 THLLLDTMKKTAQKSSR-EGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
           T  +   M +   +       I+ V+S               IN      + G Y  SK 
Sbjct: 120 TQAVARRMVEQPDRFDGPHRSIIFVTS---------------INAYLVSPNRGEYCISKA 164

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
              +  + LA  L ++G  I  + + PG I T++
Sbjct: 165 GLSMATRLLAYRLADEG--IAVHEIRPGLIHTDM 196

This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255

>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 17/149 (11%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAME 86
           G   ++TGASSGIG  TA  +A  G  V +  RN     +  + +V EI +      A  
Sbjct: 371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARN----GEALDELVAEIRAKGGTAHAYT 426

Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAG--IMASPFMLSKD---NIELQFATNHLGH 141
            D++  A+V     +  ++   ++ L+NNAG  I  S    S D   + E   A N+ G 
Sbjct: 427 CDLTDSAAVDHTVKDILAEHGHVDYLVNNAGRSIRRS-VENSTDRFHDYERTMAVNYFGA 485

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
             L   LL  M    ++    G +VNVSS
Sbjct: 486 VRLILGLLPHM--RERRF---GHVVNVSS 509

Length = 657

>gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 34/217 (15%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  AI+TG +SGIG  TAR+ A  G  V++A  +  AG    +A+  E+    +  +  D
Sbjct: 4   GKVAIITGGASGIGEATARLFAKHGARVVIADIDDDAG----QAVAAELGDPDISFVHCD 59

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASP--FML--SKDNIELQFATNHLGHFLL 144
           V+  A VR       ++   L+I+ NNAG++ +P   +L  S +  E     N  G FL 
Sbjct: 60  VTVEADVRAAVDTAVARFGRLDIMFNNAGVLGAPCYSILETSLEEFERVLDVNVYGAFLG 119

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG--AYGQSK 202
           T      M       +++G IV+V+S A                       G  AY  SK
Sbjct: 120 TKHAARVMIP-----AKKGSIVSVASVA-----------------GVVGGLGPHAYTASK 157

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            A +   +  A  L E G+ +  N + P  + T L  
Sbjct: 158 HAVLGLTRSAATELGEHGIRV--NCVSPYGVATPLLT 192

Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 28/222 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA---KVDA 84
            G  A+VTGAS GIG   AR L   G+ V+   R +    D  EA+  E  SA    +  
Sbjct: 5   RGRVALVTGASVGIGAAVARALVQHGMKVVGCARRV----DKIEALAAECQSAGYPTLFP 60

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNHLGHF 142
            + D+S+   +    S   +Q + +++ INNAG+     +LS      +  F  N L   
Sbjct: 61  YQCDLSNEEQILSMFSAIRTQHQGVDVCINNAGLARPEPLLSGKTEGWKEMFDVNVLALS 120

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSS-EAHRFAYSEGIRFDKINDESAYNSFGAYGQS 201
           + T     +MK   +++  +G I+N++S   HR                  + F  Y  +
Sbjct: 121 ICTREAYQSMK---ERNVDDGHIININSMSGHR--VPPV------------SVFHFYAAT 163

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIVTN-LFRYNG 242
           K A     + L + L+E   +I A S+ PG + T   F+ + 
Sbjct: 164 KHAVTALTEGLRQELREAKTHIRATSISPGLVETEFAFKLHD 205

Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|180771 PRK06947, PRK06947, glucose-1-dehydrogenase; Provisional

 Score = 64.1 bits (156), Expect = 3e-12
 Identities = 67/213 (31%), Positives = 96/213 (45%), Gaps = 28/213 (13%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHV-IMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV 89
             ++TGAS GIG  TA + A RG  V I   R+ AA ++  +A+       +   +  DV
Sbjct: 4   VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAV--RAAGGRACVVAGDV 61

Query: 90  SSLASV-RKFASEYNSQGRPLNILINNAGIMASPFM----LSKDNIELQFATNHLGHFLL 144
           ++ A V   F +  ++ GR L+ L+NNAGI+A P M    +    +   F TN LG +L 
Sbjct: 62  ANEADVIAMFDAVQSAFGR-LDALVNNAGIVA-PSMPLADMDAARLRRMFDTNVLGAYLC 119

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
                  +     +  R G IVNVSS A R                + N +  Y  SK A
Sbjct: 120 AREAARRLST--DRGGRGGAIVNVSSIASRLG--------------SPNEYVDYAGSKGA 163

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
                  LAK L   GV +  N++ PG I T +
Sbjct: 164 VDTLTLGLAKELGPHGVRV--NAVRPGLIETEI 194

Length = 248

>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 60/228 (26%), Positives = 90/228 (39%), Gaps = 45/228 (19%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A++TG    +G   A+ LA  G  V +  RN        EA+V EI +A  +A+ +
Sbjct: 9   KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKA----EAVVAEIKAAGGEALAV 64

Query: 88  --DVSSLASVRKFASEYNSQGRPLNILINNAG-------------IMASP----FMLSKD 128
             DV    S+ +   +      P +ILIN AG              +  P    F L ++
Sbjct: 65  KADVLDKESLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEE 124

Query: 129 NIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND 188
             E  F  N LG  L T +    M    +K    G I+N+SS     A++   +      
Sbjct: 125 GFEFVFDLNLLGTLLPTQVFAKDM--VGRK---GGNIINISSMN---AFTPLTKVP---- 172

Query: 189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN 236
                   AY  +K A     + LA H  + G  I  N++ PG  +T 
Sbjct: 173 --------AYSAAKAAISNFTQWLAVHFAKVG--IRVNAIAPGFFLTE 210

Length = 278

>gnl|CDD|181762 PRK09291, PRK09291, short chain dehydrogenase; Provisional

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 51/197 (25%), Positives = 82/197 (41%), Gaps = 40/197 (20%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
              T ++TGA SG G E A  LA +G +VI  V+       +R    +      +   +L
Sbjct: 1   MSKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR--GLALRVEKL 58

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLT 145
           D++  A  R  A+E++     +++L+NNAGI  +  +  +  + +   F TN  G   LT
Sbjct: 59  DLTD-AIDRAQAAEWD-----VDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELT 112

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRF--AYSEGIRFDKINDESAYNSFGAYGQSK- 202
              +  M   A+     G++V  SS A      ++                 GAY  SK 
Sbjct: 113 QGFVRKM--VARGK---GKVVFTSSMAGLITGPFT-----------------GAYCASKH 150

Query: 203 ----LANILHAKELAKH 215
               +A  +HA EL   
Sbjct: 151 ALEAIAEAMHA-ELKPF 166

Length = 257

>gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 33/215 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
             I+TGAS GIG   A  L  RG    V++  R+      ++E   +  P  +V  ++ D
Sbjct: 1   VIILTGASRGIGRALAEELLKRGSPSVVVLLARSEE---PLQELKEELRPGLRVTTVKAD 57

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM----LSKDNIELQFATNHLGHFLL 144
           +S  A V +            ++LINNAG +  P      +  D ++  F  N      L
Sbjct: 58  LSDAAGVEQLLEAIRKLDGERDLLINNAGSLG-PVSKIEFIDLDELQKYFDLNLTSPVCL 116

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T  LL    +  +K   +  +VNVSS A                 + +  +G Y  SK A
Sbjct: 117 TSTLL----RAFKKRGLKKTVVNVSSGAAV---------------NPFKGWGLYCSSKAA 157

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                    + L  +  ++   S  PG + T++ R
Sbjct: 158 ----RDMFFRVLAAEEPDVRVLSYAPGVVDTDMQR 188

Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241

>gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12

 Score = 63.3 bits (154), Expect = 6e-12
 Identities = 68/217 (31%), Positives = 93/217 (42%), Gaps = 36/217 (16%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD-AMEL 87
           G  AIVTGA +GIG   A  LA  G  V++A  +  A + V   I     + +VD   E 
Sbjct: 3   GKVAIVTGAGAGIGAACAARLAREGARVVVADIDGGAAQAVVAQIAGGALALRVDVTDEQ 62

Query: 88  DVSSL--ASVRKFASEYNSQGRPLNILINNAGIM-ASPFMLSKD--NIELQFATNHLGHF 142
            V++L   +V +F          L++L+NNAG M  +P ++  D    +   A N  G F
Sbjct: 63  QVAALFERAVEEFGG--------LDLLVNNAGAMHLTPAIIDTDLAVWDQTMAINLRGTF 114

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
           L        M      +   G IVN+SS               I  +S    +GAYG SK
Sbjct: 115 LCCRHAAPRM-----IARGGGSIVNLSS---------------IAGQSGDPGYGAYGASK 154

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            A     + LA  L+  G  I  N+L PG I T L  
Sbjct: 155 AAIRNLTRTLAAELRHAG--IRCNALAPGLIDTPLLL 189

These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246

>gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR

 Score = 63.6 bits (155), Expect = 6e-12
 Identities = 59/230 (25%), Positives = 89/230 (38%), Gaps = 50/230 (21%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPS--AKVDAME 86
              A++TG +  +G   AR LA  G  V    RN   G    + + KEI +   +  A+ 
Sbjct: 5   NKVAVITGGTGVLGGAMARALAQAGAKVAALGRNQEKG----DKVAKEITALGGRAIALA 60

Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAG----------------IMASPFMLSKDNI 130
            DV   AS+ +   E  +Q   ++ILIN AG                   + F L ++  
Sbjct: 61  ADVLDRASLERAREEIVAQFGTVDILINGAGGNHPDATTDPEHYEPETEQNFFDLDEEGW 120

Query: 131 ELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES 190
           E  F  N  G FL + +    M +  QK    G I+N+SS                   +
Sbjct: 121 EFVFDLNLNGSFLPSQVFGKDMLE--QKG---GSIINISS------------------MN 157

Query: 191 AYNSFG---AYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           A++      AY  +K A     + LA      GV +  N++ PG  VT  
Sbjct: 158 AFSPLTKVPAYSAAKAAVSNFTQWLAVEFATTGVRV--NAIAPGFFVTPQ 205

D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271

>gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 13/146 (8%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL--D 88
             ++TGAS+G+G  TAR  A RG  V++  R     + +      EI +A  +A+ +  D
Sbjct: 10  VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAA----EIRAAGGEALAVVAD 65

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLTH 146
           V+   +V+  A     +  P++  +NNA + +  PF  ++ +         +LG    T 
Sbjct: 66  VADAEAVQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTL 125

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEA 172
             L  M+         G I+ V S  
Sbjct: 126 AALRHMRPR-----DRGAIIQVGSAL 146

Length = 334

>gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs

 Score = 63.2 bits (154), Expect = 6e-12
 Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 28/215 (13%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM--ELD 88
            AI+TGA+ GIG   A  LA  G ++++A  N+       ++ ++EI  A  +A+    D
Sbjct: 4   VAIITGAAQGIGRAIAERLAADGFNIVLADLNLEEAA---KSTIQEISEAGYNAVAVGAD 60

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLS--KDNIELQFATNHLGHFLLTH 146
           V+    V     +   +    ++++NNAGI     +L+  +++++  +A N  G      
Sbjct: 61  VTDKDDVEALIDQAVEKFGSFDVMVNNAGIAPITPLLTITEEDLKKVYAVNVFGVLFGIQ 120

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                 KK        G+I+N SS A    +                  GAY  SK A  
Sbjct: 121 AAARQFKKLGHG----GKIINASSIAGVQGFPN---------------LGAYSASKFAVR 161

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN 241
              +  A+ L   G  IT N+  PG + T ++ Y 
Sbjct: 162 GLTQTAAQELAPKG--ITVNAYAPGIVKTEMWDYI 194

2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 64.1 bits (157), Expect = 7e-12
 Identities = 66/214 (30%), Positives = 95/214 (44%), Gaps = 39/214 (18%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A+VTGA+ GIG   A VLA  G HV+  +   AAG+ +  A+   +      A+ LD
Sbjct: 210 GKVALVTGAARGIGAAIAEVLARDGAHVV-CLDVPAAGEAL-AAVANRV---GGTALALD 264

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI-----MASPFMLSKDNIELQFATNHLGHFL 143
           +++  +  + A     +   L+I+++NAGI     +A+   + +   +   A N L    
Sbjct: 265 ITAPDAPARIAEHLAERHGGLDIVVHNAGITRDKTLAN---MDEARWDSVLAVNLLAPLR 321

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGA--YGQS 201
           +T  LL      A      GRIV VSS +       GI         A N  G   Y  S
Sbjct: 322 ITEALLA-----AGALGDGGRIVGVSSIS-------GI---------AGN-RGQTNYAAS 359

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           K   I   + LA  L E G  IT N++ PG I T
Sbjct: 360 KAGVIGLVQALAPLLAERG--ITINAVAPGFIET 391

Length = 450

>gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional

 Score = 63.3 bits (154), Expect = 7e-12
 Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 30/212 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI--PSAKVDAM 85
           TG TA++TGA  GIG   ARV A  G ++I+         ++ + +  E+     +  A+
Sbjct: 5   TGKTALITGALQGIGEGIARVFARHGANLILL----DISPEIEK-LADELCGRGHRCTAV 59

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFL 143
             DV   ASV         +   ++IL+NNAG+     F+ +S ++ +     N  G + 
Sbjct: 60  VADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWN 119

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
           +T  +L  M        ++GRIV +SS          +  D + D        AY  +K 
Sbjct: 120 VTKAVLPEMIA-----RKDGRIVMMSS----------VTGDMVADPGE----TAYALTKA 160

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           A +   K LA    +    I  N++ PG + T
Sbjct: 161 AIVGLTKSLAVEYAQS--GIRVNAICPGYVRT 190

Length = 263

>gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional

 Score = 63.1 bits (154), Expect = 8e-12
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 31/163 (19%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN----MAAGKDVREAIVKEIPSAKVD 83
            G   ++TGAS GIG   A   A  G H+ +  R+     A   D+R A         V 
Sbjct: 6   AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVA 60

Query: 84  AMELDVSSLASVRKFASEYNSQGRPLNILINNAG-IMASPFMLSKDNIELQ-----FATN 137
              LD+SS  +  + A+E       ++IL+NNAG I         D+++       +   
Sbjct: 61  VHALDLSSPEAREQLAAEAG----DIDILVNNAGAIPGGGL----DDVDDAAWRAGWELK 112

Query: 138 HLGHFLLTHLLLDTMKKTAQKSSREGRIVNV---SSEAHRFAY 177
             G+  LT L    M     K+   G IVNV   + E     Y
Sbjct: 113 VFGYIDLTRLAYPRM-----KARGSGVIVNVIGAAGENPDADY 150

Length = 259

>gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs

 Score = 62.6 bits (153), Expect = 9e-12
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 11/143 (7%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           A+VTGA+ GIG   A  LA RG +VI+  R       V + I ++    +   +  D S+
Sbjct: 4   AVVTGATDGIGKAYAEELAKRGFNVILISRTQEKLDAVAKEIEEKY-GVETKTIAADFSA 62

Query: 92  LASVRKFASEYNSQGRPLNILINNAGI---MASPFM-LSKDNIELQFATNHLGHFLLTHL 147
              + +   E   +G  + IL+NN GI   +   F+   +D ++     N +    +T L
Sbjct: 63  GDDIYE-RIEKELEGLDIGILVNNVGISHSIPEYFLETPEDELQDIINVNVMATLKMTRL 121

Query: 148 LLDTMKKTAQKSSREGRIVNVSS 170
           +L  M K      ++G IVN+SS
Sbjct: 122 ILPGMVK-----RKKGAIVNISS 139

This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 15/154 (9%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            GL A+VTG +SG+G  T   L  +G  V++     + G+ V +             + +
Sbjct: 1   KGLVAVVTGGASGLGLATVERLLAQGAKVVILDLPNSPGETVAKLGD------NCRFVPV 54

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI------ELQFA--TNHL 139
           DV+S   V+   +   ++   L+I++N AGI  +    +K           Q     N +
Sbjct: 55  DVTSEKDVKAALALAKAKFGRLDIVVNCAGIAVAAKTYNKKGQQPHSLELFQRVINVNLI 114

Query: 140 GHFLLTHLLLDTMKKTAQKSSRE-GRIVNVSSEA 172
           G F +  L    M K       E G I+N +S A
Sbjct: 115 GTFNVIRLAAGAMGKNEPDQGGERGVIINTASVA 148

HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252

>gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 51/214 (23%), Positives = 84/214 (39%), Gaps = 41/214 (19%)

Query: 31  TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV 89
           T +VTGA+ GIG      L   G   V  AVR+  +       +V +    KV  + LDV
Sbjct: 5   TVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGSAAH----LVAKYGD-KVVPLRLDV 59

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGI------MASPFMLSKDNIELQFATNHLGHFL 143
           +   S++  A    +Q + ++++INNAG+      +    +   + ++ +   N  G   
Sbjct: 60  TDPESIKAAA----AQAKDVDVVINNAGVLKPATLLEEGAL---EALKQEMDVNVFGLLR 112

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
           L       +K         G IVN++S               +     + + G Y  SK 
Sbjct: 113 LAQAFAPVLKANGG-----GAIVNLNS---------------VASLKNFPAMGTYSASKS 152

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           A     + L   L   G  +   S+HPG I T +
Sbjct: 153 AAYSLTQGLRAELAAQGTLVL--SVHPGPIDTRM 184

These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235

>gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 30/211 (14%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A++TG + GIG   A      G  V +      + ++  EA  KE+    V  ++ D
Sbjct: 7   GKVALITGGTRGIGRAIAEAFLREGAKVAV---LYNSAEN--EA--KELREKGVFTIKCD 59

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMAS-PF-MLSKDNIELQFATNHLGHFLLTH 146
           V +   V+K       +   +++L+NNAGIM   PF    ++        N  G    T+
Sbjct: 60  VGNRDQVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTY 119

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
             L  +K      S+ G IVN++S A     +EG  F              Y  +K   I
Sbjct: 120 EFLPLLKL-----SKNGAIVNIASNAGIGTAAEGTTF--------------YAITKAGII 160

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           +  + LA  L +    I  N++ PG + T++
Sbjct: 161 ILTRRLAFELGK--YGIRVNAVAPGWVETDM 189

Length = 255

>gnl|CDD|235693 PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 36/226 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL--D 88
             +VTG+  GIG   A  LA  G  V++   N     +     +K +     + + +  D
Sbjct: 8   VVVVTGSGRGIGRAIAVRLAKEGSLVVV---NAKKRAEEMNETLKMVKENGGEGIGVLAD 64

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFMLSKDN-IELQFATNHLGHFLLTH 146
           VS+       A     +    +IL+NNAG+ + SPF+   D  I+   +T+       + 
Sbjct: 65  VSTREGCETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQ 124

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
            L   M++        G IVN++S A       GIR               YG  K A I
Sbjct: 125 ELAKEMREG-------GAIVNIASVA-------GIR--------PAYGLSIYGAMKAAVI 162

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVT----NLFRYNGILRGDF 248
              K LA  L      I  N++ PG + T    +LF+  G+   +F
Sbjct: 163 NLTKYLALELAP---KIRVNAIAPGFVKTKLGESLFKVLGMSEKEF 205

Length = 252

>gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 13/145 (8%)

Query: 31  TAIVTGASSGIGTETARVLA---LRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
             ++TG SSGIG   A  LA    +   V   +R++     + EA    +    ++ ++L
Sbjct: 2   VVLITGCSSGIGLHLAVRLASDPSKRFKVYATMRDLKKKGRLWEA-AGALAGGTLETLQL 60

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLT 145
           DV    SV   A+      R +++L+ NAG+  +     LS+D +   F  N  G   + 
Sbjct: 61  DVCDSKSVA--AAVERVTERHVDVLVCNAGVGLLGPLEALSEDAMASVFDVNVFGTVRML 118

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSS 170
              L  MK+        GRI+  SS
Sbjct: 119 QAFLPDMKR-----RGSGRILVTSS 138

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258

>gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 32/212 (15%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL--DVS 90
           ++TGASSGIG  TA   A RG  V++A R+     +    + +E+     +A+ +  DV+
Sbjct: 4   VITGASSGIGRATALAFAERGAKVVLAARS----AEALHELAREVRELGGEAIAVVADVA 59

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKD----NIELQFATNHLGHFLLTH 146
             A V + A     +   ++  +NNAG+  + F   +D         F  N+LGH   T 
Sbjct: 60  DAAQVERAADTAVERFGRIDTWVNNAGV--AVFGRFEDVTPEEFRRVFDVNYLGHVYGTL 117

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
             L  +++        G ++NV S                          AY  SK A  
Sbjct: 118 AALPHLRRRG-----GGALINVGSLLGY----RSAPLQ-----------AAYSASKHAVR 157

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLF 238
              + L   L  DG  I+   + P ++ T  F
Sbjct: 158 GFTESLRAELAHDGAPISVTLVQPTAMNTPFF 189

These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233

>gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 33/217 (15%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA-IVKEIPSAKVDAMELDVSS 91
           ++TG  SG G   A+ L   G  V+         K+   A  ++ + S ++  ++LDV+ 
Sbjct: 4   LITGCDSGFGNLLAKKLDSLGFTVLAGCLT----KNGPGAKELRRVCSDRLRTLQLDVTK 59

Query: 92  LASVRKFASEYNS--QGRPLNILINNAGIMASP---FMLSKDNIELQFATNHLGHFLLTH 146
              +++ A         + L  L+NNAGI+       +L  D+       N  G   +T 
Sbjct: 60  PEQIKRAAQWVKEHVGEKGLWGLVNNAGILGFGGDEELLPMDDYRKCMEVNLFGTVEVTK 119

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
             L  +++     ++ GR+VNVSS   R  +  G               GAY  SK A  
Sbjct: 120 AFLPLLRR-----AK-GRVVNVSSMGGRVPFPAG---------------GAYCASKAAVE 158

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI 243
             +  L + L+  GV ++   + PG+  T +   + +
Sbjct: 159 AFSDSLRRELQPWGVKVSI--IEPGNFKTGITGNSEL 193

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281

>gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 30/93 (32%), Positives = 46/93 (49%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
           I   G  A+VTG SSGIG  T  +L   G  V +  R+          + ++ P A++ A
Sbjct: 4   IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLA 63

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAG 117
              DV   A V  FA+   ++   +++L+NNAG
Sbjct: 64  ARCDVLDEADVAAFAAAVEARFGGVDMLVNNAG 96

Length = 265

>gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 13/143 (9%)

Query: 34  VTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA--MELDVSS 91
           +TGA+SG+G   A   A  G  + +A  N   G    E  +K +  A  D      DV  
Sbjct: 5   ITGAASGLGRAIALRWAREGWRLALADVNEEGG----EETLKLLREAGGDGFYQRCDVRD 60

Query: 92  LASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLTHLLL 149
            + +   A     +   +++++NNAG+ +  F   LS ++ + Q A N +G        L
Sbjct: 61  YSQLTALAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFL 120

Query: 150 DTMKKTAQKSSREGRIVNVSSEA 172
              K+      + GRIVN++S A
Sbjct: 121 PLFKR-----QKSGRIVNIASMA 138

Length = 270

>gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional

 Score = 60.9 bits (148), Expect = 5e-11
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 9/151 (5%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTG++ G+G E AR LA  G HV++  RN A  +    A+     +A  +A+  
Sbjct: 10  AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAA--EALAF 67

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLT 145
           D++   +V    +  +++   L+IL+NN G     P   L    I     T+ +   LL+
Sbjct: 68  DIADEEAVAAAFARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLS 127

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFA 176
            L    MK+        GRI+ ++S A + A
Sbjct: 128 RLAAQRMKRQGY-----GRIIAITSIAGQVA 153

Length = 256

>gnl|CDD|187611 cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs

 Score = 60.4 bits (147), Expect = 6e-11
 Identities = 65/219 (29%), Positives = 96/219 (43%), Gaps = 48/219 (21%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIM-----AVRNMAAGKDVREAIVKEIPSA--K 81
           G   +VTGA  G+G   A   A RG  V++       +         + +V EI +A  K
Sbjct: 5   GRVVLVTGAGGGLGRAYALAFAERGAKVVVNDLGGDRKGSGKSSSAADKVVDEIKAAGGK 64

Query: 82  VDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHL 139
             A    V     + K A +  + GR ++IL+NNAGI+   S   +S+++ +L    +  
Sbjct: 65  AVANYDSVEDGEKIVKTAID--AFGR-VDILVNNAGILRDRSFAKMSEEDWDLVMRVHLK 121

Query: 140 GHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGA-- 197
           G F +T      M+K  QK    GRI+N SS A       G+          Y +FG   
Sbjct: 122 GSFKVTRAAWPYMRK--QKF---GRIINTSSAA-------GL----------YGNFGQAN 159

Query: 198 YGQSK-----LANILHAKELAKHLKEDGVNITANSLHPG 231
           Y  +K     L+N L A E AK+      NIT N++ P 
Sbjct: 160 YSAAKLGLLGLSNTL-AIEGAKY------NITCNTIAPA 191

Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 250

>gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional

 Score = 60.3 bits (147), Expect = 7e-11
 Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 23/146 (15%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSS 91
           ++TGAS GIG   A  LA  G  +++  RN        EA+   +P   +   +  D++S
Sbjct: 9   LLTGASGGIGQALAEALAAAGARLLLVGRNAEK----LEALAARLPYPGRHRWVVADLTS 64

Query: 92  ---LASVRKFASEYNSQGRPLNILINNAGIMASPFML----SKDNIELQFATNHLGHFLL 144
                +V   A E       +N+LINNAG+  + F L      + IE   A N      L
Sbjct: 65  EAGREAVLARAREM----GGINVLINNAGV--NHFALLEDQDPEAIERLLALNLTAPMQL 118

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSS 170
           T  LL  ++           +VNV S
Sbjct: 119 TRALLPLLRA-----QPSAMVVNVGS 139

Length = 263

>gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional

 Score = 60.4 bits (146), Expect = 7e-11
 Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 29/213 (13%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPS--AKVDAME 86
           G  AIVTG + GIG      LA  G  V++   N  + K+  E +V E+      V A++
Sbjct: 6   GKVAIVTGGAKGIGKAITVALAQEGAKVVI---NYNSSKEAAENLVNELGKEGHDVYAVQ 62

Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLL 144
            DVS +    +   E  +    ++IL+NNAGI        L++++ E     N    F  
Sbjct: 63  ADVSKVEDANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNT 122

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T  +L  + +     + EGRI+++SS        +   F + N          Y  +K  
Sbjct: 123 TSAVLPYITE-----AEEGRIISISS-----IIGQAGGFGQTN----------YSAAKAG 162

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            +   K LA  L +   N+T N++ PG I T +
Sbjct: 163 MLGFTKSLALELAK--TNVTVNAICPGFIDTEM 193

Length = 247

>gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional

 Score = 60.1 bits (146), Expect = 9e-11
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 33/176 (18%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPS--AKV-DAMELD 88
             VTGA+SGIG  TA  LA +G  + +  R+ A G       V +  +    V +   LD
Sbjct: 3   CFVTGAASGIGRATALRLAAQGAELFLTDRD-ADG---LAQTVADARALGGTVPEHRALD 58

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLG--HFLL 144
           +S   +V  FA++ ++    +++++N AGI A  +   L+ +        N +G  H   
Sbjct: 59  ISDYDAVAAFAADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIH--- 115

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRF------AY----------SEGIRFD 184
              +++T       + R G +VNVSS A         AY          SE +RFD
Sbjct: 116 ---VIETFVPPMVAAGRGGHLVNVSSAAGLVALPWHAAYSASKFGLRGLSEVLRFD 168

Length = 272

>gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 57/208 (27%), Positives = 82/208 (39%), Gaps = 29/208 (13%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           AIVTG ++GIG   A  LA  G  V++A       + V  AI +     +   +E +V+S
Sbjct: 2   AIVTGGAAGIGKAIAGTLAKAGASVVIADLKSEGAEAVAAAIQQA--GGQAIGLECNVTS 59

Query: 92  LASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFAT----NHLGHFLLTHL 147
              +        SQ   + IL+NNAG    P        E  F      N    F L+ L
Sbjct: 60  EQDLEAVVKATVSQFGGITILVNNAG-GGGPKPFDMPMTEEDFEWAFKLNLFSAFRLSQL 118

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
               M+K     +  G I+N+SS                N         AYG SK A   
Sbjct: 119 CAPHMQK-----AGGGAILNISS------------MSSEN--KNVR-IAAYGSSKAAVNH 158

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVT 235
             + LA  L   G+ +  N++ PG++ T
Sbjct: 159 MTRNLAFDLGPKGIRV--NAVAPGAVKT 184

This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 23/156 (14%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVRE----AIVKEIPS--AKV 82
           G  A++TGA+SG G   AR+ A  G+ +++A        DV++      V E+ +  A+V
Sbjct: 6   GKVAVITGAASGFGLAFARIGAALGMKLVLA--------DVQQDALDRAVAELRAQGAEV 57

Query: 83  DAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNHLG 140
             +  DVS  A V   A     +   +++L NNAG+ A   +      + +     N  G
Sbjct: 58  LGVRTDVSDAAQVEALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWG 117

Query: 141 HF----LLTHLLLDTMKKTAQKSSREGRIVNVSSEA 172
                   T L+L   +K     + EG IVN +S A
Sbjct: 118 VIHGVRAFTPLMLAAAEKDP---AYEGHIVNTASMA 150

Length = 287

>gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 36/211 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAK-VDAME 86
            G  A++T A+ GIG   A   A  G +VI          D+ E  +KE+     +    
Sbjct: 1   DGKVALITAAAQGIGRAIALAFAREGANVIAT--------DINEEKLKELERGPGITTRV 52

Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFA--TNHLGHFLL 144
           LDV+    V   A E   +GR +++L N AG +    +L  ++ +  FA   N    +L+
Sbjct: 53  LDVTDKEQVAALAKE---EGR-IDVLFNCAGFVHHGSILDCEDDDWDFAMNLNVRSMYLM 108

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
              +L  M   A+K    G I+N+SS A         RF              Y  +K A
Sbjct: 109 IKAVLPKM--LARKD---GSIINMSSVASSIKGVPN-RF-------------VYSTTKAA 149

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVT 235
            I   K +A    + G  I  N++ PG++ T
Sbjct: 150 VIGLTKSVAADFAQQG--IRCNAICPGTVDT 178

Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P). Length = 241

>gnl|CDD|183718 PRK12746, PRK12746, short chain dehydrogenase; Provisional

 Score = 59.7 bits (144), Expect = 1e-10
 Identities = 67/220 (30%), Positives = 98/220 (44%), Gaps = 39/220 (17%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHV-IMAVRNMAAGKDVREAIVKEIPS--AKVDAM 85
           G  A+VTGAS GIG   A  LA  G  V I   RN  A  +     ++EI S   K   +
Sbjct: 6   GKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADET----IREIESNGGKAFLI 61

Query: 86  ELDVSSLASVRKFASEYNSQ------GRPLNILINNAGIMASPFM--LSKDNIELQFATN 137
           E D++S+  V+K   +  ++         ++IL+NNAGI     +   +++  +   A N
Sbjct: 62  EADLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVN 121

Query: 138 HLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGA 197
               F L    L  ++        EGR++N+SS   R  ++  I               A
Sbjct: 122 IKAPFFLIQQTLPLLRA-------EGRVINISSAEVRLGFTGSI---------------A 159

Query: 198 YGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           YG SK A       LAKHL E G  IT N++ PG   T++
Sbjct: 160 YGLSKGALNTMTLPLAKHLGERG--ITVNTIMPGYTKTDI 197

Length = 254

>gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 55/207 (26%), Positives = 85/207 (41%), Gaps = 26/207 (12%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-PSAKVDAMELDVSS 91
           +VTGAS GIG E A   A  G  VI+  RN    + V + I +E     +   ++L   +
Sbjct: 8   LVTGASDGIGREAALTYARYGATVILLGRNEEKLRQVADHINEEGGRQPQWFILDLLTCT 67

Query: 92  LASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ---FATNHLGHFLLTHLL 148
             + ++ A         L+ +++NAG++     LS+ N ++       N    F+LT  L
Sbjct: 68  SENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPLSEQNPQVWQDVXQVNVNATFMLTQAL 127

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           L  + K     S  G +V  SS   R                A   +GAY  SK A    
Sbjct: 128 LPLLLK-----SDAGSLVFTSSSVGR-------------QGRAN--WGAYAVSKFATEGL 167

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVT 235
            + LA   +    N+  N ++PG   T
Sbjct: 168 XQVLADEYQ--QRNLRVNCINPGGTRT 192

Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236

>gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 66/213 (30%), Positives = 99/213 (46%), Gaps = 29/213 (13%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAME 86
           G TA+VTGA+SGIG E A  LA  G  V +A       +D   A+  EI  A  K   + 
Sbjct: 7   GKTAVVTGAASGIGKEIALELARAGAAVAIA----DLNQDGANAVADEINKAGGKAIGVA 62

Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLL 144
           +DV++  +V     +   +   ++IL++NAGI + +P    S  + +   A +  G FL 
Sbjct: 63  MDVTNEDAVNAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLT 122

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T   L  M     K  R G ++ + S  H    S          +SAY +   +G   LA
Sbjct: 123 TKAALKHM----YKDDRGGVVIYMGS-VHSHEASPL--------KSAYVT-AKHGLLGLA 168

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            +L AKE AKH      N+ ++ + PG + T L
Sbjct: 169 RVL-AKEGAKH------NVRSHVVCPGFVRTPL 194

Length = 262

>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 34/209 (16%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
              +TG + GIG   A   A  G  +++  R+    K + EA+  E  S +      D++
Sbjct: 271 VVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQA-----DIT 325

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKD----NIELQFATNHLGHFLLTH 146
             A+V    ++  ++   L++L+NNAG +A  F  S +    +    +  N  G F    
Sbjct: 326 DEAAVESAFAQIQARWGRLDVLVNNAG-IAEVFKPSLEQSAEDFTRVYDVNLSGAFA--- 381

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                 +  A+  S+ G IVN+ S               I    A     AY  SK A  
Sbjct: 382 ----CARAAARLMSQGGVIVNLGS---------------IASLLALPPRNAYCASKAAVT 422

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVT 235
           + ++ LA      G  I  N++ PG I T
Sbjct: 423 MLSRSLACEWAPAG--IRVNTVAPGYIET 449

Length = 520

>gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 37/214 (17%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           A+VTG   GIGT   + LA  G  V      N    +   +   +         +E DVS
Sbjct: 3   ALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQE--QGALGFDFRVVEGDVS 60

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLTHLL 148
           S  S +   ++  ++  P+++L+NNAGI        ++ +       TN    F +T  +
Sbjct: 61  SFESCKAAVAKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPV 120

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ-----SKL 203
           +D M++        GRI+N+SS               +N +      G +GQ     +K 
Sbjct: 121 IDGMRERGW-----GRIINISS---------------VNGQK-----GQFGQTNYSAAKA 155

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
             I   K LA+     GV  T N++ PG I T++
Sbjct: 156 GMIGFTKALAQEGATKGV--TVNTISPGYIATDM 187

This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242

>gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 60/212 (28%), Positives = 84/212 (39%), Gaps = 26/212 (12%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
             TAIVTG   GIG  T R  A  G  V +   N  A + V   I  +       A   D
Sbjct: 3   DKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK--GGNAQAFACD 60

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFMLS-KDNIELQFATNHLGHFLLTH 146
           ++   SV    +       P+++L+NNAG     PF  +     E   A N  G   + H
Sbjct: 61  ITDRDSVDTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHH 120

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
            +L  M +        GRIVN++S+A R   S          E+ Y +    G    +  
Sbjct: 121 AVLPGMVE-----RGAGRIVNIASDAARVGSS---------GEAVY-AACKGGLVAFSKT 165

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLF 238
           + A+E A+H       IT N + PG   T L 
Sbjct: 166 M-AREHARH------GITVNVVCPGPTDTALL 190

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250

>gnl|CDD|237189 PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 61/219 (27%), Positives = 93/219 (42%), Gaps = 39/219 (17%)

Query: 28  TGLTAIVTGAS--SGIGTETARVLALRGVHV-----IMAVRNMAAGKDVREAIV--KEI- 77
               A+VTGAS  +GIG    R LA +G+ +         + M  G   +E ++  +EI 
Sbjct: 4   MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIE 63

Query: 78  -PSAKVDAMELDVS-SLASVRKFASEYNSQGRPLNILINNA--GIMASPFMLSKDNIELQ 133
               + + ME+D+S   A  R F +     G P +ILINNA          L+ + ++  
Sbjct: 64  SYGVRCEHMEIDLSQPYAPNRVFYAVSERLGDP-SILINNAAYSTHTRLEELTAEQLDKH 122

Query: 134 FATNHLGHFLLTHLLLDTMKKTAQKSSRE-GRIVNVSSEAHRFAYSEGIRFDKINDESAY 192
           +A N     LL+           Q   +  GRI+N++S         G     + DE AY
Sbjct: 123 YAVNVRATMLLSSAF------AKQYDGKAGGRIINLTS---------GQSLGPMPDELAY 167

Query: 193 NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPG 231
               A  +  +      K LA  L E G  IT N+++PG
Sbjct: 168 ----AATKGAIEAF--TKSLAPELAEKG--ITVNAVNPG 198

Length = 256

>gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 27/219 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G T ++TGA   IG+   + +   G  VI A  +  A  ++ E++ KE  S K+  +EL
Sbjct: 3   KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVEL 62

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNA-----GIMASPFMLSKDNIELQFATNHLG-H 141
           D++   S+ +F S+   +   ++  +N A           F +S D+      + HLG  
Sbjct: 63  DITDQESLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNE-NLSLHLGSS 121

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI---RFDKINDESAYNSFGAY 198
           FL +       KK        G +VN+SS         G+   +F+     S  +    Y
Sbjct: 122 FLFSQQFAKYFKKQGG-----GNLVNISS-------IYGVVAPKFEIYEGTSMTSPV-EY 168

Query: 199 GQSKLANILH-AKELAKHLKEDGVNITANSLHPGSIVTN 236
              K A I+H  K LAK+ K+  + +  N + PG I+ N
Sbjct: 169 AAIK-AGIIHLTKYLAKYFKDSNIRV--NCVSPGGILDN 204

Length = 256

>gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 45/225 (20%)

Query: 21  VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA 80
           V +  D +G TA+VTG S G+G + A  L   G  V+++ R     ++        + + 
Sbjct: 4   VLELFDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAA----HLEAL 59

Query: 81  KVDAMEL--DVSSLASVRKFASEYNSQGRPLNILINNAGIMAS--------PFMLSKDNI 130
            +DA+ +  DV+  A + + A E   +   ++IL+NNAG  A+        P       +
Sbjct: 60  GIDALWIAADVADEADIERLAEETLERFGHVDILVNNAG--ATWGAPAEDHPVEAWDKVM 117

Query: 131 ELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES 190
            L    N  G FLL+      + K +      GRI+NV+S A       G+     N   
Sbjct: 118 NL----NVRGLFLLSQ----AVAKRSMIPRGYGRIINVASVA-------GL---GGNPPE 159

Query: 191 AYNSFGAYGQSKLANILHAKELA----KHLKEDGVNITANSLHPG 231
             ++  AY  SK A I   + LA     H       I  N++ PG
Sbjct: 160 VMDTI-AYNTSKGAVINFTRALAAEWGPH------GIRVNAIAPG 197

Length = 259

>gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 61/213 (28%), Positives = 92/213 (43%), Gaps = 27/213 (12%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  AIVTGA SGIG  TA++ A  G  V++A R+  A + V  AI       +  A + D
Sbjct: 5   GRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAA---GGRAFARQGD 61

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNHLGHFLLTH 146
           V S  +V        ++   L++L+NNAG      +++ D  +       N  G FL   
Sbjct: 62  VGSAEAVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAK 121

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
             +  M++  Q     G IVN +S+         +        +AY +      SK A  
Sbjct: 122 YAIPIMQR--QGG---GSIVNTASQ---------LALAGGRGRAAYVA------SKGAIA 161

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
              + +A     DG  I  N++ PG+I T  FR
Sbjct: 162 SLTRAMALDHATDG--IRVNAVAPGTIDTPYFR 192

Length = 252

>gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR

 Score = 57.5 bits (139), Expect = 6e-10
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 13/147 (8%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI--PSAKVDAMELD 88
            A+VTGA+SGIG   AR L   G+ V +  R     + +    VKE+     + D    D
Sbjct: 5   VALVTGATSGIGLAIARRLGKEGLRVFVCARG---EEGLATT-VKELREAGVEADGRTCD 60

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQF---ATNHLGHFLLT 145
           V S+  +    +   ++  P+++L+NNAG           + EL      TN  G F +T
Sbjct: 61  VRSVPEIEALVAAAVARYGPIDVLVNNAGRSGGGATAELAD-ELWLDVVETNLTGVFRVT 119

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEA 172
             +L   K         GRI+N++S  
Sbjct: 120 KEVL---KAGGMLERGTGRIINIASTG 143

Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258

>gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional

 Score = 57.5 bits (139), Expect = 6e-10
 Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 35/210 (16%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           TA+VTGA+ GIG   AR     G  V+    + AA      A    +  A+   +  D++
Sbjct: 4   TALVTGAAGGIGQALARRFLAAGDRVLALDIDAAAL----AAFADALGDARFVPVACDLT 59

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHL---GHFLLTHL 147
             AS+    +   ++  P+++L+ NAG  A    L         A N L     +L    
Sbjct: 60  DAASLAAALANAAAERGPVDVLVANAG-AARAASLHDTTPASWRADNALNLEAAYLCVEA 118

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG--AYGQSKLAN 205
           +L+ M K ++     G +VN+ S               +N      + G  AY  +K   
Sbjct: 119 VLEGMLKRSR-----GAVVNIGS---------------VN---GMAALGHPAYSAAKAGL 155

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           I + K LA      G  I AN++ PG++ T
Sbjct: 156 IHYTKLLAVEYGRFG--IRANAVAPGTVKT 183

Length = 257

>gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 60/216 (27%), Positives = 84/216 (38%), Gaps = 48/216 (22%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD-- 83
           +    T ++TGA+SGIG   AR    +G  V         G D      ++ P    +  
Sbjct: 2   EFMTKTVLITGAASGIGLAQARAFLAQGAQVY--------GVD-----KQDKPDLSGNFH 48

Query: 84  AMELDVSS-LASVRKFASEYNSQGRPLNILINNAGIM-ASPFMLSKDNIELQ--FATNHL 139
            ++LD+S  L  +  +           +IL N AGI+     +L     E Q  F TN  
Sbjct: 49  FLQLDLSDDLEPLFDWVPSV-------DILCNTAGILDDYKPLLDTSLEEWQHIFDTNLT 101

Query: 140 GHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
             FLLT   L  M    +KS   G I+N+ S A   A   G                AY 
Sbjct: 102 STFLLTRAYLPQML--ERKS---GIIINMCSIASFVAGGGGA---------------AYT 141

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
            SK A     K+LA    +DG  I    + PG++ T
Sbjct: 142 ASKHALAGFTKQLALDYAKDG--IQVFGIAPGAVKT 175

Length = 235

>gnl|CDD|233441 TIGR01500, sepiapter_red, sepiapterin reductase

 Score = 57.2 bits (138), Expect = 8e-10
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 22/155 (14%)

Query: 32  AIVTGASSGIGTETARVLALR----GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            +VTGAS G G   A+ LA      G  ++++ RN  A + ++  I  E    +V  + L
Sbjct: 3   CLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSL 62

Query: 88  DVSSLASVRKFASEYNSQGRPLN----ILINNAGIMASPFMLSK--------DNIELQFA 135
           D+ + A + +         RP      +LINNAG +     +SK          ++  +A
Sbjct: 63  DLGAEAGLEQLLKALRELPRPKGLQRLLLINNAGTLGD---VSKGFVDLSDSTQVQNYWA 119

Query: 136 TNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
            N      LT  +   +K           +VN+SS
Sbjct: 120 LNLTSMLCLTSSV---LKAFKDSPGLNRTVVNISS 151

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. Length = 256

>gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 31/208 (14%)

Query: 34  VTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLA 93
           +TGAS G G         RG  V+   R+ A   D    + ++     +  + LDV+  A
Sbjct: 8   ITGASRGFGRAWTEAALERGDRVVATARDTATLAD----LAEKYGDR-LLPLALDVTDRA 62

Query: 94  SVRKFASEYNSQ-GRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLTHLLLD 150
           +V           GR L+I++NNAG      +  +++     Q  TN  G   +T  +L 
Sbjct: 63  AVFAAVETAVEHFGR-LDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLP 121

Query: 151 TMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAK 210
            ++   Q+S   G I+ +SS         GI        SA+   G Y  SK A    ++
Sbjct: 122 YLR--EQRS---GHIIQISSIG-------GI--------SAFPMSGIYHASKWALEGMSE 161

Query: 211 ELAKHLKEDGVNITANSLHPGSIVTNLF 238
            LA+ + E G+ +T   + PG   T+  
Sbjct: 162 ALAQEVAEFGIKVTL--VEPGGYSTDWA 187

Length = 275

>gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 25/206 (12%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL 92
           ++TG  SG+G  TA  LA  G  + +   N    +  + A+++  P A+V  ++ DVS  
Sbjct: 7   LITGGGSGLGLATAVRLAKEGAKLSLVDLNEEGLEAAKAALLEIAPDAEVLLIKADVSDE 66

Query: 93  ASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNHLGHFLLTHLLL 149
           A V  +      Q   ++   NNAGI            D  +   + N  G F     +L
Sbjct: 67  AQVEAYVDATVEQFGRIDGFFNNAGIEGKQNLTEDFGADEFDKVVSINLRGVFYGLEKVL 126

Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             M++  Q S   G IVN +S         GIR   + ++S Y +      +K   +   
Sbjct: 127 KVMRE--QGS---GMIVNTASVG-------GIR--GVGNQSGYAA------AKHGVVGLT 166

Query: 210 KELAKHLKEDGVNITANSLHPGSIVT 235
           +  A    + G+ I  N++ PG+I+T
Sbjct: 167 RNSAVEYGQYGIRI--NAIAPGAILT 190

Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 22/214 (10%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G   +VTG S GIG   A+     G  VI++ R   A  D  E +       +  A+  D
Sbjct: 6   GKIVLVTGGSRGIGRMIAQGFLEAGARVIISARKAEACADAAEELSA---YGECIAIPAD 62

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTH 146
           +SS   +    +    +   L++L+NNAG    A      +   +     N    F LT 
Sbjct: 63  LSSEEGIEALVARVAERSDRLDVLVNNAGATWGAPLEAFPESGWDKVMDINVKSVFFLTQ 122

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
            LL  ++  A  +    R++N+ S A       GI          Y    +YG SK A  
Sbjct: 123 ALLPLLRAAAT-AENPARVINIGSIA-------GIVVSG---LENY----SYGASKAAVH 167

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
              ++LAK L  +  +IT N++ PG   + +  +
Sbjct: 168 QLTRKLAKELAGE--HITVNAIAPGRFPSKMTAF 199

Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVD 83
           D  G TA+VTG+S GIG +TA++LA  G HV++  R  A        +V EI +A  +  
Sbjct: 3   DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRA---NKVVAEIEAAGGRAS 59

Query: 84  AMELDVSSLASVRKFASEYNSQGRPLNILINNA 116
           A+  D++   SV         +   L+ L+ NA
Sbjct: 60  AVGADLTDEESVAALMDTAREEFGGLDALVLNA 92

Length = 248

>gnl|CDD|236357 PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 56/214 (26%), Positives = 85/214 (39%), Gaps = 38/214 (17%)

Query: 34  VTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE-IPSAKVDAMELDVSSL 92
           VTGA  GIG E A   A  G  VI+  R     + V + I     P   +  ++L  ++ 
Sbjct: 17  VTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATP 76

Query: 93  ASVRKFASEYNSQ-GRPLNILINNAGIMA--SPF-MLSKDNIELQFATNHLGHFLLTHLL 148
            + ++ A     Q GR L+ +++NAG++    P      +  +     N    F+LT  L
Sbjct: 77  QNYQQLADTIEEQFGR-LDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQAL 135

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA---- 204
           L  + K     S    +V  SS   R    +G          A   +GAY  SK A    
Sbjct: 136 LPLLLK-----SPAASLVFTSSSVGR----QG---------RAN--WGAYAVSKFATEGM 175

Query: 205 -NILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
             +L A E        G N+  N ++PG   T +
Sbjct: 176 MQVL-ADEY------QGTNLRVNCINPGGTRTAM 202

Length = 247

>gnl|CDD|187621 cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), classical (c) SDR

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 11/148 (7%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G TA++TG++ GIG   A+     G  V +A  N+ A +    A   EI  A   A+ LD
Sbjct: 3   GKTALITGSARGIGRAFAQAYVREGARVAIADINLEAAR----ATAAEIGPAAC-AISLD 57

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTH 146
           V+  AS+ +  +    +   ++IL+NNA +  +A    +++++ +  FA N  G   +  
Sbjct: 58  VTDQASIDRCVAALVDRWGSIDILVNNAALFDLAPIVDITRESYDRLFAINVSGTLFMMQ 117

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHR 174
            +   M   AQ   R G+I+N++S+A R
Sbjct: 118 AVARAM--IAQ--GRGGKIINMASQAGR 141

This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 254

>gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 39/208 (18%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           TA++TGAS GIG   AR LA     +++  R      ++      E+P A      +D++
Sbjct: 5   TALITGASRGIGAAIARELA-PTHTLLLGGRPAERLDELAA----ELPGAT--PFPVDLT 57

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTHLL 148
              ++   A+     GR L++L++NAG+  +      + D        N +    LT LL
Sbjct: 58  DPEAI---AAAVEQLGR-LDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLL 113

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           L  ++      +  G +V ++S A       G+R        A   +G+Y  SK A    
Sbjct: 114 LPALR------AAHGHVVFINSGA-------GLR--------ANPGWGSYAASKFA---- 148

Query: 209 AKELAKHLKED-GVNITANSLHPGSIVT 235
            + LA  L+E+   N+   S+HPG   T
Sbjct: 149 LRALADALREEEPGNVRVTSVHPGRTDT 176

Length = 227

>gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 31/212 (14%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G TA++TG +SGIG ETAR     G  V +  R+ A+ +  R  +           +  D
Sbjct: 6   GKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL-----GESALVIRAD 60

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFML-SKDNIELQFATNHLGHFLLTH 146
              +A+ +  A         L+ +  NAG+   +P     +   +  F TN  G + L  
Sbjct: 61  AGDVAAQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQ 120

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
            LL  +   A        ++N S  AH            I   ++      Y  SK A +
Sbjct: 121 ALLPLLANPASI------VLNGSINAH------------IGMPNS----SVYAASKAALL 158

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLF 238
             AK L+  L   G+ +  N++ PG + T L+
Sbjct: 159 SLAKTLSGELLPRGIRV--NAVSPGPVQTPLY 188

Length = 249

>gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 27/210 (12%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A+VTGA++G+G   A  LA  G  ++ A    +   + ++ +       +  ++  D
Sbjct: 5   GKVALVTGANTGLGQGIAVGLAEAGADIVGA--GRSEPSETQQQVEAL--GRRFLSLTAD 60

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTH 146
           +S + +++        +   ++IL+NNAGI+  A     S+ + +     N    F LT 
Sbjct: 61  LSDIEAIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQ 120

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                  K   K  R G+I+N++S     ++  GIR              +Y  SK A  
Sbjct: 121 ----AAAKHFLKQGRGGKIINIAS---MLSFQGGIRVP------------SYTASKHAVA 161

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTN 236
              K LA      G+N+  N++ PG + TN
Sbjct: 162 GLTKLLANEWAAKGINV--NAIAPGYMATN 189

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248

>gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 59/214 (27%), Positives = 89/214 (41%), Gaps = 41/214 (19%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           T ++TG SSG G   A+     G  V+  VR+ AA    R       P  +  A  LDV+
Sbjct: 6   TWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAA----RADFEALHP-DRALARLLDVT 60

Query: 91  SLASVRKFASEYNSQGRPLNILINNAG------IMASPFMLSKDNIELQFATNHLGHFLL 144
              ++    ++  +   P+++L+NNAG      I  SP       +  QF  N  G   +
Sbjct: 61  DFDAIDAVVADAEATFGPIDVLVNNAGYGHEGAIEESPL----AEMRRQFEVNVFGAVAM 116

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T  +L  M+       R G IVN++S         G+              G Y  SK A
Sbjct: 117 TKAVLPGMRA-----RRRGHIVNITSMG-------GLI--------TMPGIGYYCGSKFA 156

Query: 205 --NILHAKELAKHLKEDGVNITANSLHPGSIVTN 236
              I  +  LAK +   G+++TA  + PGS  T+
Sbjct: 157 LEGISES--LAKEVAPFGIHVTA--VEPGSFRTD 186

Length = 277

>gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A +TG  +GIG   A+  A  G  V +A R     +   E I       +   ++ D
Sbjct: 3   GKVAFITGGGTGIGKAIAKAFAELGASVAIAGRKPEVLEAAAEEISSA-TGGRAHPIQCD 61

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAG 117
           V    +V     E   +   ++ILINNA 
Sbjct: 62  VRDPEAVEAAVDETLKEFGKIDILINNAA 90

TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249

>gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 10/147 (6%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAI--VKEIPSAKVDAMELD 88
            A+VTG   GIG   AR LA  G  +  A+ +    +++      ++ +   +V     D
Sbjct: 4   VALVTGGRRGIGLGIARALAAAGFDL--AINDRPDDEELAATQQELRALG-VEVIFFPAD 60

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASP----FMLSKDNIELQFATNHLGHFLL 144
           V+ L++         +    ++ L+NNAG+          L+ ++ +   A N  G F L
Sbjct: 61  VADLSAHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFL 120

Query: 145 THLLLDTM-KKTAQKSSREGRIVNVSS 170
           T  +   M  +   +      IV VSS
Sbjct: 121 TQAVAKRMLAQPEPEELPHRSIVFVSS 147

Length = 256

>gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 54/215 (25%), Positives = 88/215 (40%), Gaps = 34/215 (15%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
            I+TG S G+G   A  L  +G HVI   R     ++     + E  ++ +    LD+  
Sbjct: 4   VIITGTSQGLGEAIANQLLEKGTHVISISR----TENKELTKLAEQYNSNLTFHSLDLQD 59

Query: 92  LASVRKFASEYNSQGRPLNI----LINNAGIMA--SPF-MLSKDNIELQFATNHLGHFLL 144
           +  +    +E  S  +  N+    LINNAG++A   P      + +      N L   +L
Sbjct: 60  VHELETNFNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMIL 119

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T      MK T      + R++N+SS A +               + Y  + AY  SK  
Sbjct: 120 TSTF---MKHTKDWKV-DKRVINISSGAAK---------------NPYFGWSAYCSSKAG 160

Query: 205 NILHAKELA--KHLKEDGVNITANSLHPGSIVTNL 237
             +  + +A  +  +E  V I A S  PG + TN+
Sbjct: 161 LDMFTQTVATEQEEEEYPVKIVAFS--PGVMDTNM 193

Length = 251

>gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 30/209 (14%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAME--LD 88
            A+V GASSGIG  TA  LA  G  V +  R +    +  E +V +I +   +A+   LD
Sbjct: 12  PALVAGASSGIGAATAIELAAAGFPVALGARRV----EKCEELVDKIRADGGEAVAFPLD 67

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTH 146
           V+   SV+ F ++       + +L++ AG         +S +  E Q   + +G   L  
Sbjct: 68  VTDPDSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLAT 127

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
            +L  M        R G ++ V S+                        GAYG +K    
Sbjct: 128 AVLPGM-----IERRRGDLIFVGSDVALRQRPH---------------MGAYGAAKAGLE 167

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVT 235
                L   L  +G  + A+ +HPG  +T
Sbjct: 168 AMVTNLQMEL--EGTGVRASIVHPGPTLT 194

Length = 274

>gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 18/143 (12%)

Query: 34  VTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLA 93
           +TGA+SGIG  TA + A  G  V     N A    +      E+ +       LDV+  A
Sbjct: 6   ITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALA----AELGAGNAWTGALDVTDRA 61

Query: 94  SVRK----FASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLTHL 147
           +       FA+   + GR L++L NNAGI    PF  +  +  +     N  G     H 
Sbjct: 62  AWDAALADFAAA--TGGR-LDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHA 118

Query: 148 LLDTMKKTAQKSSREGRIVNVSS 170
            L  +K T        R++N SS
Sbjct: 119 ALPYLKATP-----GARVINTSS 136

Length = 260

>gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases

 Score = 54.4 bits (131), Expect = 9e-09
 Identities = 58/215 (26%), Positives = 89/215 (41%), Gaps = 33/215 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELD 88
            A+VTG + GIG   A  LA  G  V +A  N    K+      KEI  A  K  A +LD
Sbjct: 2   VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKET----AKEINQAGGKAVAYKLD 57

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMAS-PFM-LSKDNIELQFATNHLGHFLLTH 146
           VS    V     +   +    ++++NNAG+    P + ++++ ++  +  N  G      
Sbjct: 58  VSDKDQVFSAIDQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQ 117

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKLA 204
                 KK        G+I+N +S A                 SAY+S  F   G ++ A
Sbjct: 118 AAARQFKKQGHG----GKIINAASIAGHEGNPI---------LSAYSSTKFAVRGLTQTA 164

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
               A+ELA      G  IT N+  PG + T ++ 
Sbjct: 165 ----AQELAP----KG--ITVNAYCPGIVKTPMWE 189

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254

>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 27  GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAME 86
                 +VTGA+ GIG    +  A  G  V++A RN+   ++  +++          A+ 
Sbjct: 3   AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL-----GPDHHALA 57

Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM-----LSKDNIELQFATNHLGH 141
           +DVS  A +R+   + + +   +++L+NNAG+   P M      + +      A N  G 
Sbjct: 58  MDVSDEAQIREGFEQLHREFGRIDVLVNNAGV-TDPTMTATLDTTLEEFARLQAINLTGA 116

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQS 201
           +L+    L  M     +      IVNV+S A       G+         A     AY  S
Sbjct: 117 YLVAREALRLM----IEQGHGAAIVNVASGA-------GLV--------ALPKRTAYSAS 157

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           K A I   + LA      G+ + A  + PG + T +
Sbjct: 158 KAAVISLTRSLACEWAAKGIRVNA--VLPGYVRTQM 191

Length = 520

>gnl|CDD|181044 PRK07577, PRK07577, short chain dehydrogenase; Provisional

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 57/214 (26%), Positives = 85/214 (39%), Gaps = 45/214 (21%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           T +VTGA+ GIG   +  LA  G  VI   R+               P    +    D++
Sbjct: 5   TVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD----------FPG---ELFACDLA 51

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLG---HFLLTHL 147
            +       ++ N    P++ ++NN GI A P  L K ++        L       +T  
Sbjct: 52  DIEQTAATLAQINEIH-PVDAIVNNVGI-ALPQPLGKIDLAALQDVYDLNVRAAVQVTQA 109

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
            L+ MK        +GRIVN+ S A   A           D ++Y    +  +S L    
Sbjct: 110 FLEGMKL-----REQGRIVNICSRAIFGAL----------DRTSY----SAAKSALVGCT 150

Query: 208 H--AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
              A ELA++       IT N++ PG I T LFR
Sbjct: 151 RTWALELAEY------GITVNAVAPGPIETELFR 178

Length = 234

>gnl|CDD|187633 cd08928, KR_fFAS_like_SDR_c_like, ketoacyl reductase (KR) domain of fungal-type fatty acid synthase (fFAS)-like, classical (c)-like SDRs

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 36/212 (16%), Positives = 64/212 (30%), Gaps = 21/212 (9%)

Query: 32  AIVTGASSG-IGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            ++TGA  G IG E  + L   G  V +     +         +     A    + +   
Sbjct: 1   VLITGAGDGSIGAEVLQGLLNGGAKVYVTTSRFSRQVTKYYQDIYAACGAAGSVLIVVPF 60

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDN---IELQFATNHLGHFLLTHL 147
           +  S +   +        +N L      +  PF    +    I    + + + H ++   
Sbjct: 61  NQGSKQDVEALAIGIYDTVNGLGW-DLDLYGPFAAIPETGIEIPAIDSKSEVAHRIMLTN 119

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRF--AYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
           LL           R   +V +  +        ++ I     N    +   GAY +SKL  
Sbjct: 120 LL-----------RPKGLVKIQKQLRGQETRPAQVILPFSPN-HGTFGDDGAYSESKLHL 167

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
                  A      G ++T    H G     L
Sbjct: 168 ETLFNRWASESW--GNDLTVCGAHIGWTRGTL 197

KR domain of FAS, including the fungal-type multidomain FAS alpha chain, and the single domain daunorubicin C-13 ketoreductase. Fungal-type FAS is a heterododecameric FAS composed of alpha and beta multifunctional polypeptide chains. The KR, an SDR family member is located centrally in the alpha chain. KR catalyzes the NADP-dependent reduction of ketoacyl-ACP to hydroxyacyl-ACP. KR shares the critical active site Tyr of the classical SDR and has partial identity of the active site tetrad, but the upstream Asn is replaced in KR by Met. As in other SDRs, there is a glycine rich NAD(P)-binding motif, but the pattern found in KR does not match the classical SDRs, and is not strictly conserved within this group. Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Single domain daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|181131 PRK07814, PRK07814, short chain dehydrogenase; Provisional

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 58/211 (27%), Positives = 87/211 (41%), Gaps = 28/211 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
               A+VTGA  G+G   A   A  G  V++A R  +   +V E I      A V A   
Sbjct: 9   DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAA-- 66

Query: 88  DVSSLASVRKFASE-YNSQGRPLNILINN-AGIMASPFM-LSKDNIELQFATNHLGHFLL 144
           D++   +    A +   + GR L+I++NN  G M +P +  S  ++   F  N      L
Sbjct: 67  DLAHPEATAGLAGQAVEAFGR-LDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHAL 125

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T   +  M +     S  G ++N+SS   R                A   F AYG +K A
Sbjct: 126 TVAAVPLMLEH----SGGGSVINISSTMGRL---------------AGRGFAAYGTAKAA 166

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVT 235
              + +  A  L      I  N++ PGSI+T
Sbjct: 167 LAHYTRLAALDLCP---RIRVNAIAPGSILT 194

Length = 263

>gnl|CDD|135765 PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydrogenase; Validated

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 25/209 (11%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  AI+TGA +GIG E A   A  G  V+++  N  A   V + I +     +  A   D
Sbjct: 11  GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCD 68

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFMLSKDNIELQFATNHLGHFLLTHL 147
           ++S   +   A    S+   ++IL+NNAG     PF +   +    +  N    F L+ L
Sbjct: 69  ITSEQELSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQL 128

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
           +   M+K        G I+ ++S A                E+   +  +Y  SK A   
Sbjct: 129 VAPEMEKNGG-----GVILTITSMA---------------AENKNINMTSYASSKAAASH 168

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVTN 236
             + +A  L E   NI  N + PG+I+T+
Sbjct: 169 LVRNMAFDLGEK--NIRVNGIAPGAILTD 195

Length = 255

>gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 54/212 (25%), Positives = 86/212 (40%), Gaps = 41/212 (19%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
             ++TG SSGIG   A      G  V    R            V+ + +A   A++LDV+
Sbjct: 3   VVLITGCSSGIGRALADAFKAAGYEVWATARK--------AEDVEALAAAGFTAVQLDVN 54

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLS--KDNIELQFATNHLGHFLLTHLL 148
             A++ + A E  ++   L++LINNAG  A   +L    + +  QF TN      +T  L
Sbjct: 55  DGAALARLAEELEAEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRAL 114

Query: 149 LDTMKKTAQKSSREGRIVNVSSEA----HRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
              ++++       G +VN+ S +      FA                   GAY  SK A
Sbjct: 115 FPLLRRS------RGLVVNIGSVSGVLVTPFA-------------------GAYCASKAA 149

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTN 236
             +HA   A  L+     +    + PG+I + 
Sbjct: 150 --VHALSDALRLELAPFGVQVMEVQPGAIASQ 179

Length = 274

>gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM 85
           D TG  A+VTG+S GIG   A  LA  G  VI+  R+ A      E++  +       A+
Sbjct: 7   DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ--GLSAHAL 64

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGI 118
             DV+   +VR     + ++  P++IL+NNAG+
Sbjct: 65  AFDVTDHDAVRAAIDAFEAEIGPIDILVNNAGM 97

Length = 255

>gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 46/220 (20%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM 85
                 AIVTG S GIG      L   G +VI                +KE     VD  
Sbjct: 3   GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVI-------------NFDIKEPSYNDVDYF 49

Query: 86  ELDVSS----LASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHL 139
           ++DVS+    +  +    S+Y      ++IL+NNAGI    +   + +D  +     N  
Sbjct: 50  KVDVSNKEQVIKGIDYVISKYGR----IDILVNNAGIESYGAIHAVEEDEWDRIINVNVN 105

Query: 140 GHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
           G FL++   +  M K       +G I+N++S               +   +   +  AY 
Sbjct: 106 GIFLMSKYTIPYMLKQ-----DKGVIINIAS---------------VQSFAVTRNAAAYV 145

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            SK A +   + +A    +    I   ++ PGSI T L  
Sbjct: 146 TSKHAVLGLTRSIA---VDYAPTIRCVAVCPGSIRTPLLE 182

Length = 258

>gnl|CDD|235813 PRK06482, PRK06482, short chain dehydrogenase; Provisional

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 16/151 (10%)

Query: 31  TAIVTGASSGIGTE-TARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV 89
           T  +TGASSG G   T R+LA RG  V   VR   A  D++          ++  ++LDV
Sbjct: 4   TWFITGASSGFGRGMTERLLA-RGDRVAATVRRPDALDDLKARY-----GDRLWVLQLDV 57

Query: 90  SSLASVRK-FASEYNSQGRPLNILINNAG--IMASPFMLSKDNIELQFATNHLGHFLLTH 146
           +  A+VR      + + GR ++++++NAG  +  +   LS   I  Q  TN +G   +  
Sbjct: 58  TDSAAVRAVVDRAFAALGR-IDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIR 116

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAY 177
             L  +++        GRIV VSSE  + AY
Sbjct: 117 AALPHLRR-----QGGGRIVQVSSEGGQIAY 142

Length = 276

>gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 46/206 (22%), Positives = 81/206 (39%), Gaps = 29/206 (14%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+V G    +G      LA  G  V +A  N     +V + I  E           D +
Sbjct: 4   VAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADAT 63

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLTHLL 148
           S  SV   +   +     +++L+ NAGI  + F+      + +     N +G+FL     
Sbjct: 64  SEQSVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFL----- 118

Query: 149 LDTMKKTAQ---KSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
               ++ ++   +   +GRI+ ++S++ +               S +NS   Y  +K   
Sbjct: 119 --CAREFSRLMIRDGIQGRIIQINSKSGKVG-------------SKHNS--GYSAAKFGG 161

Query: 206 ILHAKELAKHLKEDGVNITANSLHPG 231
           +   + LA  L E G  IT +SL  G
Sbjct: 162 VGLTQSLALDLAEYG--ITVHSLMLG 185

Length = 259

>gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 45/156 (28%), Positives = 64/156 (41%), Gaps = 27/156 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   IVTG SSGIG    + L   G +V+ A        D+      +        +  
Sbjct: 8   QGKIIIVTGGSSGIGLAIVKELLANGANVVNA--------DIHGG---DGQHENYQFVPT 56

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM-----------ASPFMLSKDNIELQFAT 136
           DVSS   V    +E   +   ++ L+NNAGI            A  + L++   +  F  
Sbjct: 57  DVSSAEEVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNI 116

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA 172
           N  G FL++  +   M K  Q     G IVN+SSEA
Sbjct: 117 NQKGVFLMSQAVARQMVK--QHD---GVIVNMSSEA 147

Length = 266

>gnl|CDD|180796 PRK07023, PRK07023, short chain dehydrogenase; Provisional

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 53/214 (24%), Positives = 81/214 (37%), Gaps = 39/214 (18%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           AIVTG S G+G   A  L   G+ V+   R+       R   +      ++  +ELD+S 
Sbjct: 4   AIVTGHSRGLGAALAEQLLQPGIAVLGVARS-------RHPSLAAAAGERLAEVELDLSD 56

Query: 92  LASVRKFASEYNSQ----GRPLNILINNAGI---MASPFMLSKDNIELQFATNHLGHFLL 144
            A+   + +         G    +LINNAG    +     L    I      N     +L
Sbjct: 57  AAAAAAWLAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLML 116

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T  L       A++     RI+++SS A R AY+                +  Y  +K A
Sbjct: 117 TAALAQAASDAAER-----RILHISSGAARNAYA---------------GWSVYCATKAA 156

Query: 205 NILHAKELAKHLKEDGVN-ITANSLHPGSIVTNL 237
              HA+ +A     D    +   SL PG + T +
Sbjct: 157 LDHHARAVA----LDANRALRIVSLAPGVVDTGM 186

Length = 243

>gnl|CDD|180440 PRK06172, PRK06172, short chain dehydrogenase; Provisional

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 61/217 (28%), Positives = 86/217 (39%), Gaps = 33/217 (15%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA--ME 86
           G  A+VTG ++GIG  TA   A  G  V++A R+ A G    E  V  I  A  +A  + 
Sbjct: 7   GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGG----EETVALIREAGGEALFVA 62

Query: 87  LDVSSLASVRKFASE-YNSQGRPLNILINNAGIMASPFML---SKDNIELQFATNHLGHF 142
            DV+  A V+    +   + GR L+   NNAGI      L   S+   +     N  G +
Sbjct: 63  CDVTRDAEVKALVEQTIAAYGR-LDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVW 121

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
           L     +  M          G IVN +S A                  A      Y  SK
Sbjct: 122 LCMKYQIPLMLAQGG-----GAIVNTASVA---------------GLGAAPKMSIYAASK 161

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            A I   K  A    + G+ +  N++ P  I T++FR
Sbjct: 162 HAVIGLTKSAAIEYAKKGIRV--NAVCPAVIDTDMFR 196

Length = 253

>gnl|CDD|235910 PRK07024, PRK07024, short chain dehydrogenase; Provisional

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 30  LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELD 88
           L   +TGASSGIG   AR  A +G  + +  R      D  +A    +P +A+V     D
Sbjct: 3   LKVFITGASSGIGQALAREYARQGATLGLVARR----TDALQAFAARLPKAARVSVYAAD 58

Query: 89  VSSLASVRKFASEY-NSQGRPLNILINNAGIMASPFMLSKDNIELQ-----FATNHLGHF 142
           V    ++   A+++  + G P +++I NAGI  S   L+++  +L        TN+ G  
Sbjct: 59  VRDADALAAAAADFIAAHGLP-DVVIANAGI--SVGTLTEEREDLAVFREVMDTNYFGMV 115

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
                 +  M     +++R G +V ++S A       G+R             GAY  SK
Sbjct: 116 ATFQPFIAPM-----RAARRGTLVGIASVA-------GVR--------GLPGAGAYSASK 155

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN 241
            A I + + L   L+  GV +   ++ PG I T +  +N
Sbjct: 156 AAAIKYLESLRVELRPAGVRVV--TIAPGYIRTPMTAHN 192

Length = 257

>gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 50/212 (23%), Positives = 82/212 (38%), Gaps = 36/212 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTG + GIG  T   L   G  V+   R+                   V+ +  
Sbjct: 8   AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDLP-----------EGVEFVAA 56

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASP---FM-LSKDNIELQFATNHLGHFL 143
           D+++       A     +   ++IL++  G  ++P   F  L+ +  + +   N L    
Sbjct: 57  DLTTAEGCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVR 116

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
           L   LL  M   A+ S   G I++V+S   R                   S  AY  +K 
Sbjct: 117 LDRALLPGM--IARGS---GVIIHVTSIQRRL--------------PLPESTTAYAAAKA 157

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           A   ++K L+K +   GV +  N++ PG I T
Sbjct: 158 ALSTYSKSLSKEVAPKGVRV--NTVSPGWIET 187

Length = 260

>gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 29/210 (13%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL 92
           IVTG S GIG    R     G  V+   R  AAG+ +   + +  P +    +  DV+  
Sbjct: 13  IVTGGSRGIGRGIVRAFVENGAKVVFCARGEAAGQALESELNRAGPGSCK-FVPCDVTKE 71

Query: 93  ASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFAT----NHLGHFLLTHLL 148
             ++   S    +   ++ L+NNAG    P   + +    +F      N + +FL +   
Sbjct: 72  EDIKTLISVTVERFGRIDCLVNNAG-WHPPHQTTDETSAQEFRDLLNLNLISYFLASKYA 130

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           L  ++K+      +G I+N+SS        +                  Y  +K A    
Sbjct: 131 LPHLRKS------QGNIINLSSLVGSIGQKQAA---------------PYVATKGAITAM 169

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLF 238
            K LA  + E    +  N + PG+I T L+
Sbjct: 170 TKALA--VDESRYGVRVNCISPGNIWTPLW 197

These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261

>gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A++TG  SGIG  TAR LA  G  V++   +  AGK    A   E+    V     D
Sbjct: 7   GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGK----AAADEVGGLFVPT---D 59

Query: 89  VSSLASVRK-FASEYNSQGRPLNILINNAGIMASP 122
           V+   +V   F +   + G  ++I  NNAGI  SP
Sbjct: 60  VTDEDAVNALFDTAAETYGS-VDIAFNNAGI--SP 91

Length = 255

>gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 22/101 (21%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL- 87
           G  AI+TGASSGIG   A++ A  G  V++  R  A      + +V EI +   +A+ L 
Sbjct: 6   GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAE----LDQLVAEIRAEGGEAVALA 61

Query: 88  -DVSSLA--------SVRKFASEYNSQGRPLNILINNAGIM 119
            DV   A        +V +F       G  L+I  NNAG +
Sbjct: 62  GDVRDEAYAKALVALAVERF-------GG-LDIAFNNAGTL 94

Length = 254

>gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 29/211 (13%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
            D +G  A+VTGAS GIG E AR+L  +G   I+ +      K   EA+  E+   +V  
Sbjct: 2   FDLSGRKALVTGASGGIGEEIARLLHAQG--AIVGLHGTRVEK--LEALAAEL-GERVKI 56

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHF 142
              ++S    V+    +  +    ++IL+NNAGI        +S ++ +     N    F
Sbjct: 57  FPANLSDRDEVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATF 116

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
            LT  L   M +      R GRI+N++S         G+      +    N    Y  SK
Sbjct: 117 RLTRELTHPMMR-----RRYGRIINITSVV-------GV----TGNPGQAN----YCASK 156

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSI 233
              I  +K LA+ +     N+T N + PG I
Sbjct: 157 AGMIGFSKSLAQEIATR--NVTVNCVAPGFI 185

Length = 245

>gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9

 Score = 51.3 bits (123), Expect = 8e-08
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 14/143 (9%)

Query: 34  VTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLA 93
           +TGA+SGIG ETA + A  G  V +   +      +   +  E   A      LDV+  A
Sbjct: 5   ITGAASGIGRETALLFARNGWFVGLYDIDEDGLAALAAELGAENVVAGA----LDVTDRA 60

Query: 94  SVRKFASEY--NSQGRPLNILINNAGIM-ASPF-MLSKDNIELQFATNHLGHFLLTHLLL 149
           +     +++   + GR L+ L NNAG+    PF  +     +     N  G     +  L
Sbjct: 61  AWAAALADFAAATGGR-LDALFNNAGVGRGGPFEDVPLAAHDRMVDINVKGVLNGAYAAL 119

Query: 150 DTMKKTAQKSSREGRIVNVSSEA 172
             +K T        R++N +S +
Sbjct: 120 PYLKATPG-----ARVINTASSS 137

This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227

>gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 59/218 (27%), Positives = 86/218 (39%), Gaps = 31/218 (14%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM 85
           D  G  A++TGAS+GIG   A      G  V +A R++ A + + + I       KV  +
Sbjct: 6   DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGT--SGGKVVPV 63

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFA--TNHLGHFL 143
             DVS    V     +  ++   ++I + NAGI+    ML     E Q    TN  G FL
Sbjct: 64  CCDVSQHQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFL 123

Query: 144 LTHLLLDTMKKTAQKSSREGR----IVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
                  T +  A+   ++G+    I   S   H     + +                Y 
Sbjct: 124 -------TAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQV--------------SHYC 162

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            SK A I   K +A  L      I  NS+ PG I+T L
Sbjct: 163 ASKAAVIHLTKAMAVELAPH--KIRVNSVSPGYILTEL 198

Length = 253

>gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 19/154 (12%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM---ELDV 89
           +VTGA++G G    R    +G  VI      A G+  R+  ++E+     D +   +LDV
Sbjct: 4   LVTGATAGFGECITRRFIQQGHKVI------ATGR--RQERLQELKDELGDNLYIAQLDV 55

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNHLGHFLLTH 146
            + A++ +  +   ++ R +++L+NNAG+   +      S ++ E    TN+ G   +T 
Sbjct: 56  RNRAAIEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTR 115

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
            +L  M +        G I+N+ S A  + Y+ G
Sbjct: 116 AVLPGMVE-----RNHGHIINIGSTAGSWPYAGG 144

Length = 248

>gnl|CDD|187662 cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 56/210 (26%), Positives = 82/210 (39%), Gaps = 33/210 (15%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  AIVTG   GIG +        G  V+ A  +   G D  EA   E P+        D
Sbjct: 1   GKVAIVTGGGHGIGKQICLDFLEAGDKVVFADIDEERGADFAEA---EGPNLFFVHG--D 55

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTH 146
           V+    V+        +   +++L+NNA   +      L  +  +   + N  G + L+ 
Sbjct: 56  VADETLVKFVVYAMLEKLGRIDVLVNNAARGSKGILSSLLLEEWDRILSVNLTGPYELSR 115

Query: 147 LLLDTMKKTAQKSSREGRIVNV-SSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              D + K       +GRI+N+ S+ A +   SE        D  AY    A  +  L  
Sbjct: 116 YCRDELIK------NKGRIINIASTRAFQ---SE-------PDSEAY----AASKGGLVA 155

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           + HA  LA  L  D   I  N + PG I T
Sbjct: 156 LTHA--LAMSLGPD---IRVNCISPGWINT 180

This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242

>gnl|CDD|183719 PRK12747, PRK12747, short chain dehydrogenase; Provisional

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 65/220 (29%), Positives = 94/220 (42%), Gaps = 39/220 (17%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A+VTGAS GIG   A+ LA  G  V +   N    K+  E  V EI S    A  + 
Sbjct: 4   GKVALVTGASRGIGRAIAKRLANDGALVAIHYGNR---KEEAEETVYEIQSNGGSAFSIG 60

Query: 89  VSSLASVRKFASEYNS-----QGRP----LNILINNAGIMASPFM--LSKDNIELQFATN 137
            ++L S+    + Y+S     Q R      +ILINNAGI    F+   ++   +   + N
Sbjct: 61  -ANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVN 119

Query: 138 HLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGA 197
               F +    L  ++  +       RI+N+SS A R +  +               F A
Sbjct: 120 AKAPFFIIQQALSRLRDNS-------RIINISSAATRISLPD---------------FIA 157

Query: 198 YGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           Y  +K A       LAK L   G  IT N++ PG I T++
Sbjct: 158 YSMTKGAINTMTFTLAKQLGARG--ITVNAILPGFIKTDM 195

Length = 252

>gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 28/213 (13%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G   +VTGA+ GIG E AR L  RG  + +     A    +   +       +V  +  D
Sbjct: 9   GKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELG---GDDRVLTVVAD 65

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNHLGHFLLTH 146
           V+ LA+++  A E   +   +++++ NAGI +   +   D    +     N LG F    
Sbjct: 66  VTDLAAMQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVR 125

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
             L  + +        G ++ VSS A  FA + G+        +AY +  A G    AN 
Sbjct: 126 ATLPALIERR------GYVLQVSSLA-AFAAAPGM--------AAYCASKA-GVEAFANA 169

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           L   E+A H    GV  T  S +   I T+L R
Sbjct: 170 LRL-EVAHH----GV--TVGSAYLSWIDTDLVR 195

Length = 296

>gnl|CDD|219957 pfam08659, KR, KR domain

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 31  TAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPS--AKVDAMEL 87
           T +VTG   G+G E AR LA RG  H+++  R+ A   +    +  E+ +  A+V  +  
Sbjct: 2   TYLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALL-AELEARGAEVTVVAC 60

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKD 128
           DVS   +VR   +E  + G PL  +I+ AG++    + +  
Sbjct: 61  DVSDRDAVRALLAEIRADGPPLRGVIHAAGVLRDALLANMT 101

This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181

>gnl|CDD|187589 cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 54/225 (24%), Positives = 79/225 (35%), Gaps = 54/225 (24%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           T ++TGA+SGIG  TA +L   G  VI        G D+REA V             D+S
Sbjct: 1   TIVITGAASGIGAATAELLEDAGHTVI--------GIDLREADVIA-----------DLS 41

Query: 91  SLASVRK-FASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLL 149
           +        A         L+ L+N AG+  +          L    N+ G   L   LL
Sbjct: 42  TPEGRAAAIADVLARCSGVLDGLVNCAGVGGTT------VAGLVLKVNYFGLRALMEALL 95

Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK-----------------INDESAY 192
             ++K           V VSS A       G   DK                 + + +  
Sbjct: 96  PRLRKGHG-----PAAVVVSSIA-----GAGWAQDKLELAKALAAGTEARAVALAEHAGQ 145

Query: 193 NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
             + AY  SK A  +  +  A      G  +  N++ PG + T +
Sbjct: 146 PGYLAYAGSKEALTVWTRRRA-ATWLYGAGVRVNTVAPGPVETPI 189

Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|183772 PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 31/166 (18%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   +VTGA+ GIG   A   A  G  V++  R+     ++   +  E+ +A  +A+ L
Sbjct: 7   AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS-----ELVHEVAAELRAAGGEALAL 61

Query: 88  --DVSSLASVRK-FASEYNSQGRPLNILINNAG--IMASPFM-LSKDNIELQ-----FAT 136
             D+ + A  +   A+   + GR +++LINN G  I A PF    ++ IE +     F T
Sbjct: 62  TADLETYAGAQAAMAAAVEAFGR-IDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPT 120

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA----HRFAYS 178
                 +L H+L       AQ     G IVNVSS A    +R  YS
Sbjct: 121 LWCCRAVLPHML-------AQGG---GAIVNVSSIATRGINRVPYS 156

Length = 260

>gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 10/145 (6%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  AIVTG ++G+G   A  LA  G  +I+         + R  I KE    KV  +++
Sbjct: 14  DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE--GRKVTFVQV 70

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAG-IMASPFMLSKD-NIELQFATNHLGHFLLT 145
           D++   S  K   E   +   ++IL+NNAG I  +P +  KD +       N    + L+
Sbjct: 71  DLTKPESAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLS 130

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSS 170
             +   M K  Q S   G+I+N++S
Sbjct: 131 QAVAKVMAK--QGS---GKIINIAS 150

Length = 258

>gnl|CDD|236099 PRK07791, PRK07791, short chain dehydrogenase; Provisional

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 18/158 (11%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIM-----AVRNMAAGKDVREAIVKEIPSA--K 81
           G   IVTGA  GIG   A   A  G  V++      +   A+G    +A+V EI +A  +
Sbjct: 6   GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGE 65

Query: 82  VDAMELDVSSLAS----VRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATN 137
             A   D++        V      +   G  L++L+NNAGI+    + +    E      
Sbjct: 66  AVANGDDIADWDGAANLVDAAVETF---GG-LDVLVNNAGILRDRMIANMSEEEWDAVIA 121

Query: 138 -HL-GHFLLTHLLLDTMKKTAQK-SSREGRIVNVSSEA 172
            HL GHF          +  ++   + + RI+N SS A
Sbjct: 122 VHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGA 159

Length = 286

>gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 34/214 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA--M 85
            G  A++TGAS GIG   A+  A  G  ++    N    + V + +        ++A   
Sbjct: 9   KGKIALITGASYGIGFAIAKAYAKAGATIVF---NDINQELVDKGL-AAYRELGIEAHGY 64

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML--SKDNIELQFATNHLGHFL 143
             DV+    V+   S+   +   ++IL+NNAGI+    ML  S ++       +    F+
Sbjct: 65  VCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFI 124

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
           ++  ++ +M K        G+I+N+ S       SE  R       SAY +  A G  K+
Sbjct: 125 VSKAVIPSMIK-----KGHGKIINICS-----MMSELGR----ETVSAYAA--AKGGLKM 168

Query: 204 --ANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
              NI  A E  +       NI  N + PG I T
Sbjct: 169 LTKNI--ASEYGEA------NIQCNGIGPGYIAT 194

Length = 265

>gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 38/219 (17%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAG-KDVREAIVK---EIPSAK 81
           D  G   ++TG S+G+G   A         V++  R+      DV E I K   E  + K
Sbjct: 4   DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVK 63

Query: 82  VD-AMELDVSSL--ASVRKFASEYNSQGRPLNILINNAGI-MASP-FMLSKDNIELQFAT 136
            D  +E DV +L   +V++F +        L+++INNAGI  A P   +S ++      T
Sbjct: 64  GDVTVESDVVNLIQTAVKEFGT--------LDVMINNAGIENAVPSHEMSLEDWNKVINT 115

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG 196
           N  G FL +   +    +   K    G I+N+SS               ++++  +  F 
Sbjct: 116 NLTGAFLGSREAIKYFVEHDIK----GNIINMSS---------------VHEQIPWPLFV 156

Query: 197 AYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
            Y  SK    L  + LA      G  I  N++ PG+I T
Sbjct: 157 HYAASKGGVKLMTETLAMEYAPKG--IRVNNIGPGAINT 193

Length = 261

>gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 55/218 (25%), Positives = 82/218 (37%), Gaps = 37/218 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA--M 85
            G  A++TG  SGIG   A   A  G  V  A+  +   +D  E   K I         +
Sbjct: 25  KGKKALITGGDSGIGRAVAIAFAREGADV--AINYLPEEEDDAEETKKLIEEEGRKCLLI 82

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM--LSKDNIELQFATNHLGHF 142
             D+   +  R    E   +   L+IL+NNA        +  ++ + +E  F TN    F
Sbjct: 83  PGDLGDESFCRDLVKEVVKEFGKLDILVNNAAYQHPQESIEDITTEQLEKTFRTNIFSMF 142

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGA---YG 199
            LT   L  +KK +        I+N +S               +    AY        Y 
Sbjct: 143 YLTKAALPHLKKGS-------SIINTTS---------------VT---AYKGSPHLLDYA 177

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            +K A +   + L+  L E G  I  N++ PG I T L
Sbjct: 178 ATKGAIVAFTRGLSLQLAEKG--IRVNAVAPGPIWTPL 213

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270

>gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 36/210 (17%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
             +VTGAS G+G   AR  A  G  V++   N     +  EA+  E    +  A++ DV 
Sbjct: 2   VVLVTGASRGLGAAIARSFAREGARVVV---NYYRSTESAEAVAAEA-GERAIAIQADVR 57

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFM----LSKDNIELQFATNHL-----GH 141
               V+    E  +   P++ ++NNA ++  PF      + D I+ +     L     G 
Sbjct: 58  DRDQVQAMIEEAKNHFGPVDTIVNNA-LIDFPFDPDQRKTFDTIDWEDYQQQLEGAVKGA 116

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQS 201
             L   +L   K+        GR++N+ +                  ++    +  Y  +
Sbjct: 117 LNLLQAVLPDFKE-----RGSGRVINIGTNLF---------------QNPVVPYHDYTTA 156

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPG 231
           K A +   + +AK L   G  IT N +  G
Sbjct: 157 KAALLGFTRNMAKELGPYG--ITVNMVSGG 184

This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246

>gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 34/215 (15%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHV-IMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           G  A++TG  SGIG   A + A  G  + I+ +       + ++ + KE    K   +  
Sbjct: 46  GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE--GVKCLLIPG 103

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAG--IMASPFM-LSKDNIELQFATNHLGHFLL 144
           DVS  A  +    E   +   L+IL+NNA           ++ + ++  F TN   +F +
Sbjct: 104 DVSDEAFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHM 163

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T   L  +K+ +        I+N  S               I       +   Y  +K A
Sbjct: 164 TKAALPHLKQGSA-------IINTGS---------------ITGYEGNETLIDYSATKGA 201

Query: 205 NILHA--KELAKHLKEDGVNITANSLHPGSIVTNL 237
             +HA  + LA+ L + G  I  N++ PG I T L
Sbjct: 202 --IHAFTRSLAQSLVQKG--IRVNAVAPGPIWTPL 232

Length = 290

>gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 15/157 (9%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G   +VTGA+ GIG   A  LA  G  V++  R+     +V   I+             D
Sbjct: 4   GKVVVVTGAAQGIGRGVAERLAGEGARVLLVDRS-ELVHEVLAEILAA--GDAAHVHTAD 60

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAG--IMASPFM-LSKDNIELQFATNHLGHFLLT 145
           + + A  +        +   +++LINN G  I A P+    ++ IE +   +        
Sbjct: 61  LETYAGAQGVVRAAVERFGRVDVLINNVGGTIWAKPYEHYEEEQIEAEIRRSLFPTLWCC 120

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEA----HRFAYS 178
             +L  M +  Q     G IVNVSS A    +R  YS
Sbjct: 121 RAVLPHMLERQQ-----GVIVNVSSIATRGIYRIPYS 152

DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256

>gnl|CDD|169389 PRK08339, PRK08339, short chain dehydrogenase; Provisional

 Score = 48.3 bits (115), Expect = 9e-07
 Identities = 59/219 (26%), Positives = 86/219 (39%), Gaps = 34/219 (15%)

Query: 24  GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD 83
            ID +G  A  T +S GIG   ARVLA  G  VI+  RN    K  RE I K   +  V 
Sbjct: 3   KIDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKI-KSESNVDVS 61

Query: 84  AMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM-LSKDNIELQFATNHLGHF 142
            +  D++    + +   E  + G P     +  G     FM +S ++ E           
Sbjct: 62  YIVADLTKREDLERTVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAV 121

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR-----FAYSEGIRFDKINDESAYNSFGA 197
            LT  L+  M++        GRI+  +S A +      A S  +R               
Sbjct: 122 YLTRALVPAMER-----KGFGRIIYSTSVAIKEPIPNIALSNVVRI-------------- 162

Query: 198 YGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN 236
                +A ++  + LAK L   G  IT N + PG I T+
Sbjct: 163 ----SMAGLV--RTLAKELGPKG--ITVNGIMPGIIRTD 193

Length = 263

>gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 49/214 (22%), Positives = 78/214 (36%), Gaps = 38/214 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   +V+G   G+G   A   A  G  V++A R      +V      EI      A+ +
Sbjct: 4   KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEV----AAEIDDLGRRALAV 59

Query: 88  --DVSSLASVRKFASEYNSQ-GRPLNILINNAGIMASPFMLSKDNIELQ-----FATNHL 139
             D++         +    + GR ++ L+NNA     P M    + +          N L
Sbjct: 60  PTDITDEDQCANLVALALERFGR-VDALVNNA--FRVPSMKPLADADFAHWRAVIELNVL 116

Query: 140 GHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
           G   LT      + ++       G IV ++S   R                +   +GAY 
Sbjct: 117 GTLRLTQAFTPALAES------GGSIVMINSMVLR---------------HSQPKYGAYK 155

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSI 233
            +K A +  ++ LA  L   G  I  NS+ PG I
Sbjct: 156 MAKGALLAASQSLATELGPQG--IRVNSVAPGYI 187

Length = 258

>gnl|CDD|180408 PRK06114, PRK06114, short chain dehydrogenase; Provisional

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 58/211 (27%), Positives = 88/211 (41%), Gaps = 27/211 (12%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL- 87
           G  A VTGA SGIG   A  LA  G  V +         D      + I +A   A+++ 
Sbjct: 8   GQVAFVTGAGSGIGQRIAIGLAQAGADVALFDL---RTDDGLAETAEHIEAAGRRAIQIA 64

Query: 88  -DVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLL 144
            DV+S A +R   +   ++   L + +N AGI  A+P   + ++  +     N  G FL 
Sbjct: 65  ADVTSKADLRAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLS 124

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
                  M +     +  G IVN++S +       GI  ++   ++ YN+      SK  
Sbjct: 125 CQAEARAMLE-----NGGGSIVNIASMS-------GIIVNRGLLQAHYNA------SKAG 166

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVT 235
            I  +K LA      G  I  NS+ PG   T
Sbjct: 167 VIHLSKSLAMEWVGRG--IRVNSISPGYTAT 195

Length = 254

>gnl|CDD|187664 cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 59/222 (26%), Positives = 77/222 (34%), Gaps = 40/222 (18%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPS--AKVDAME 86
           G  A+VTGAS GIG   A  L   G  V +  R             +EI +   K   + 
Sbjct: 3   GKIALVTGASRGIGRGIALQLGEAGATVYITGR---TILPQLPGTAEEIEARGGKCIPVR 59

Query: 87  LDVSSLASVRKFASEYNS--QGRPLNILINNA--------GIMASPFM-LSKDNIELQFA 135
            D S    V           QGR L+IL+NNA          +A PF        +    
Sbjct: 60  CDHSDDDEVEALFERVAREQQGR-LDILVNNAYAAVQLILVGVAKPFWEEPPTIWDDINN 118

Query: 136 TNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF 195
                H+  +      M K  +     G IV +SS                  E  +N  
Sbjct: 119 VGLRAHYACSVYAAPLMVKAGK-----GLIVIISSTGG--------------LEYLFNV- 158

Query: 196 GAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            AYG  K A    A ++A  LK  G  +   SL PG + T L
Sbjct: 159 -AYGVGKAAIDRMAADMAHELKPHG--VAVVSLWPGFVRTEL 197

This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 265

>gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 15/149 (10%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAV-RNMAAGKDVREAIVKEIPSAKVDA-- 84
            G  A+VTG + G+G   AR  A RG   ++   RN   G    EA   E+ +    A  
Sbjct: 5   DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKG----EAQAAELEALGAKAVF 60

Query: 85  MELDVSSLASVRKFASEYNSQ-GRPLNILINNAGIMASPFML--SKDNIELQFATNHLGH 141
           ++ D+S +   R+  +  +   GR L+ L+N AG+     +L  S +  +  FA N    
Sbjct: 61  VQADLSDVEDCRRVVAAADEAFGR-LDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAP 119

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
           F L    +  M+    +   EG IVN+ S
Sbjct: 120 FFLMQEAIKLMR----RRKAEGTIVNIGS 144

Length = 260

>gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 49/212 (23%), Positives = 74/212 (34%), Gaps = 38/212 (17%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL--D 88
            A+VTGA+  IG   A  LA  G  V++      A       +  E+ + +  A+ +  D
Sbjct: 2   VALVTGAAKRIGRAIAEALAAEGYRVVVHYNRSEAEAQ---RLKDELNALRNSAVLVQAD 58

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTH 146
           +S  A+     +         ++L+NNA           S+D     F  N    +LL  
Sbjct: 59  LSDFAACADLVAAAFRAFGRCDVLVNNASAFYPTPLGQGSEDAWAELFGINLKAPYLLIQ 118

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK--LA 204
                        SR G I+N+       A ++                 AY  SK  L 
Sbjct: 119 AF-----ARRLAGSRNGSIINIID-----AMTDRPLTGYF----------AYCMSKAALE 158

Query: 205 NI--LHAKELAKHLKEDGVNITANSLHPGSIV 234
            +    A ELA        NI  N + PG I+
Sbjct: 159 GLTRSAALELAP-------NIRVNGIAPGLIL 183

Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234

>gnl|CDD|235713 PRK06139, PRK06139, short chain dehydrogenase; Provisional

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL 92
           ++TGASSGIG  TA   A RG  +++A R+  A + V E        A+V  +  DV+  
Sbjct: 11  VITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL--GAEVLVVPTDVTDA 68

Query: 93  ASVRKFASEYNSQGRPLNILINNAGIMA 120
             V+  A++  S G  +++ +NN G+ A
Sbjct: 69  DQVKALATQAASFGGRIDVWVNNVGVGA 96

Length = 330

>gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 25/206 (12%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           A+VTGA  GIG   A+ L   G  V +   N    +   + + K+   A   A++ DVS 
Sbjct: 5   ALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAI--AVKADVSD 62

Query: 92  LASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLTHLLL 149
              V     +       LN+++NNAG+  +  +  ++++  +  +  N  G         
Sbjct: 63  RDQVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQ 122

Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
           +  KK        G+I+N +S+A       G      N E A      Y  +K A     
Sbjct: 123 EAFKKLGHG----GKIINATSQAGV----VG------NPELA-----VYSSTKFAVRGLT 163

Query: 210 KELAKHLKEDGVNITANSLHPGSIVT 235
           +  A+ L  +G  IT N+  PG + T
Sbjct: 164 QTAARDLASEG--ITVNAYAPGIVKT 187

Length = 256

>gnl|CDD|166421 PLN02780, PLN02780, ketoreductase/ oxidoreductase

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 31/159 (19%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A+VTG + GIG   A  LA +G+++++  RN    KDV ++I  +    ++  + +D
Sbjct: 53  GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVD 112

Query: 89  VSSLAS--VRKFASEYNSQGRPLNILINNAGIMASPFM-------------LSKDNIELQ 133
            S      V++       +G  + +LINN G ++ P+              L K N+E  
Sbjct: 113 FSGDIDEGVKRIKETI--EGLDVGVLINNVG-VSYPYARFFHEVDEELLKNLIKVNVE-- 167

Query: 134 FATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA 172
                 G   +T  +L  M K      ++G I+N+ S A
Sbjct: 168 ------GTTKVTQAVLPGMLK-----RKKGAIINIGSGA 195

Length = 320

>gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
            G   T ++TG   G+G   AR LA RG  H+++  R   A +    A +     A+V  
Sbjct: 147 GGLDGTYLITGGLGGLGLLVARWLAARGARHLVLLSRRGPAPRAAARAALLRAGGARVSV 206

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGI 118
           +  DV+  A++    +E  + G PL  +I+ AG+
Sbjct: 207 VRCDVTDPAALAALLAEL-AAGGPLAGVIHAAGV 239

Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375

>gnl|CDD|171531 PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 51/216 (23%), Positives = 89/216 (41%), Gaps = 27/216 (12%)

Query: 23  QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV 82
           Q  D  G  AI+TG ++G+G   A  LA  G  ++     +A   + +  +  E    K 
Sbjct: 2   QLFDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV--GVAEAPETQAQV--EALGRKF 57

Query: 83  DAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML--SKDNIELQFATNHLG 140
             +  D+     +    S+       ++ILINNAGI+    +L     + +     N   
Sbjct: 58  HFITADLIQQKDIDSIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKT 117

Query: 141 HFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ 200
            F L+      + K   K    G+I+N++S     ++  GIR              +Y  
Sbjct: 118 VFFLSQ----AVAKQFVKQGNGGKIINIAS---MLSFQGGIRVP------------SYTA 158

Query: 201 SKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN 236
           SK A +   + LA  L +  +N+  N++ PG + T+
Sbjct: 159 SKSAVMGLTRALATELSQYNINV--NAIAPGYMATD 192

Length = 251

>gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  AIVTG ++ IG   AR L   G  V +   +   G  V  ++       +   +  D
Sbjct: 6   GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATD 60

Query: 89  VSSLASVRK-FASEYNSQGRPLNILINNA 116
           ++  A++ +  A+     GR ++IL+N A
Sbjct: 61  ITDDAAIERAVATVVARFGR-VDILVNLA 88

Length = 261

>gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 32/150 (21%)

Query: 33  IVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL--DV 89
           IVTG +SGIG   +  LA  G + VI   R+    +   E +    P A+   ++L  D 
Sbjct: 11  IVTGGASGIGAAISLRLAEEGAIPVIFG-RSAPDDE-FAEELRALQPRAEFVQVDLTDDA 68

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFAT---------NHLG 140
               +V +  +++   GR ++ L+NNAG+         D + L+            N + 
Sbjct: 69  QCRDAVEQTVAKF---GR-IDGLVNNAGV--------NDGVGLEAGREAFVASLERNLIH 116

Query: 141 HFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
           ++++ H  L  +K +       G IVN+SS
Sbjct: 117 YYVMAHYCLPHLKAS------RGAIVNISS 140

Length = 258

>gnl|CDD|236110 PRK07831, PRK07831, short chain dehydrogenase; Provisional

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 29  GLTAIVTGAS-SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           G   +VT A+ +GIG+ TAR     G  V+++  +     +  + +  E+   +V+A+  
Sbjct: 17  GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVC 76

Query: 88  DVSSLASVRK-FASEYNSQGRPLNILINNAGI 118
           DV+S A V     +     GR L++L+NNAG+
Sbjct: 77  DVTSEAQVDALIDAAVERLGR-LDVLVNNAGL 107

Length = 262

>gnl|CDD|236145 PRK08063, PRK08063, enoyl-(acyl carrier protein) reductase; Provisional

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 12/147 (8%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPS--AKVDAM 85
           +G  A+VTG+S GIG   A  LA  G  +     N A  +   E   +EI +   K  A+
Sbjct: 3   SGKVALVTGSSRGIGKAIALRLAEEGYDI---AVNYARSRKAAEETAEEIEALGRKALAV 59

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNA--GIMASPFMLSKDNIELQFATNHLGHFL 143
           + +V  +  +++  ++ + +   L++ +NNA  G++     L + + +     N      
Sbjct: 60  KANVGDVEKIKEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLF 119

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSS 170
                   M+K        G+I+++SS
Sbjct: 120 CAQEAAKLMEKVGG-----GKIISLSS 141

Length = 250

>gnl|CDD|183714 PRK12742, PRK12742, oxidoreductase; Provisional

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 57/220 (25%), Positives = 81/220 (36%), Gaps = 37/220 (16%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM 85
             TG   +V G S GIG    R     G +V       A  KD  E + +E  +    A+
Sbjct: 3   AFTGKKVLVLGGSRGIGAAIVRRFVTDGANV---RFTYAGSKDAAERLAQETGA---TAV 56

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFL 143
           + D +   +V     +       L+IL+ NAGI        L  D+I+  F  N      
Sbjct: 57  QTDSADRDAVIDVVRKSG----ALDILVVNAGIAVFGDALELDADDIDRLFKIN------ 106

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN-DESAYNSFGAYGQSK 202
             H       + A++    GRI+ + S               +N D        AY  SK
Sbjct: 107 -IHAPYHASVEAARQMPEGGRIIIIGS---------------VNGDRMPVAGMAAYAASK 150

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG 242
            A    A+ LA+     G  IT N + PG I T+    NG
Sbjct: 151 SALQGMARGLARDFGPRG--ITINVVQPGPIDTDANPANG 188

Length = 237

>gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 26/86 (30%), Positives = 45/86 (52%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL 92
           ++TGASSG+G   AR  A +G  + +  R     ++++  ++   P  KV    LDV+  
Sbjct: 6   LITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDH 65

Query: 93  ASVRKFASEYNSQGRPLNILINNAGI 118
             V +  +E+  +   L+ +I NAGI
Sbjct: 66  DQVFEVFAEFRDELGGLDRVIVNAGI 91

Length = 248

>gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 18/149 (12%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           T +VTG S G+G   AR  A  G  V++   N    +D  EA+  E+   +  A++ DV+
Sbjct: 7   TVLVTGGSRGLGAAIARAFAREGARVVV---NYHQSEDAAEALADELGD-RAIALQADVT 62

Query: 91  SLASVRK-FASEYNSQGRPLNILINNAGI------MASPFM--LSKDNIELQFATNHLGH 141
               V+  FA+     G+P+  ++NNA         A      ++ ++ + Q   +  G 
Sbjct: 63  DREQVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGA 122

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
                  L  M++        GRI+N+ +
Sbjct: 123 LNTIQAALPGMRE-----QGFGRIINIGT 146

Length = 253

>gnl|CDD|234422 TIGR03971, SDR_subfam_1, oxidoreductase, SDR family

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 34/220 (15%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIM--AVRNM-------AAGKDVREAIVKEIPS 79
           G  A +TGA+ G G   A  LA  G  +I       +        A ++  +   + + +
Sbjct: 3   GKVAFITGAARGQGRAHAVRLAAEGADIIAIDLCAPLSDYPTYPLATREDLDETARLVEA 62

Query: 80  A--KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFA 135
              KV A + DV  LA VR    +   Q   L++++ NAG++     + LS++  +    
Sbjct: 63  LGRKVLARKADVRDLAEVRAVVEDGVEQFGRLDVVVANAGVLSYGRSWELSEEQWDTVLD 122

Query: 136 TNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF 195
            N  G +     ++  M +        G I+  SS A       G++        A    
Sbjct: 123 INLTGVWRTCKAVVPHMIERGNG----GSIIITSSVA-------GLKALPGLAHYAAAKH 171

Query: 196 GAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           G  G   L   L A ELA++       I  NS+HP S+ T
Sbjct: 172 GLVG---LTKTL-ANELAEY------GIRVNSIHPYSVDT 201

Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. Members of the present subfamily may occur several to a genome and are largely restricted to genomes that contain members of families TIGR03962, TIGR03967, and TIGR03969. Many members have been annotated by homology as carveol dehydrogenases. Length = 265

>gnl|CDD|180766 PRK06940, PRK06940, short chain dehydrogenase; Provisional

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 68/236 (28%), Positives = 99/236 (41%), Gaps = 41/236 (17%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELDVS 90
           +V GA  GIG   AR +   G  V++A  N        EA  K +  A   V   E+DVS
Sbjct: 6   VVIGAG-GIGQAIARRVGA-GKKVLLADYNEENL----EAAAKTLREAGFDVSTQEVDVS 59

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLD 150
           S  SV+  A+   + G P+  L++ AG+  SP   S+ + E     +  G    T L+L+
Sbjct: 60  SRESVKALAATAQTLG-PVTGLVHTAGV--SP---SQASPEAILKVDLYG----TALVLE 109

Query: 151 TMKKTAQKSSREGRIVNVSSEA-HRFAY--------------SEGIRFDKINDESAYNSF 195
              K     +  G  V ++S++ HR                  E +    +  ++  +S 
Sbjct: 110 EFGKVI---APGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLPFLQPDAIEDSL 166

Query: 196 GAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF--RYNGILRGDFF 249
            AY  +K AN L     A    E G  I  NS+ PG I T L     NG  RGD +
Sbjct: 167 HAYQIAKRANALRVMAEAVKWGERGARI--NSISPGIISTPLAQDELNGP-RGDGY 219

Length = 275

>gnl|CDD|181077 PRK07677, PRK07677, short chain dehydrogenase; Provisional

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
             I+TG SSG+G   A+  A  G +V++  R     ++ +  I  E    +V  +++DV 
Sbjct: 3   VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEI--EQFPGQVLTVQMDVR 60

Query: 91  SLASVRKFASEYNSQGRPLNILINNA 116
           +   V+K   + + +   ++ LINNA
Sbjct: 61  NPEDVQKMVEQIDEKFGRIDALINNA 86

Length = 252

>gnl|CDD|181297 PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 21/153 (13%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM--ELDVS 90
           ++TG + G+G   A  LA +G  + +   N    ++  E  V E  +   +      +V+
Sbjct: 9   VITGGAQGLGRAMAEYLAQKGAKLALIDLN----QEKLEEAVAECGALGTEVRGYAANVT 64

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFML-----------SKDNIELQFATNHL 139
               V    ++       LN LINNAGI+    ++           S +  +     N  
Sbjct: 65  DEEDVEATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLT 124

Query: 140 GHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA 172
           G FL        M ++  K    G I+N+SS A
Sbjct: 125 GVFLCGREAAAKMIESGSK----GVIINISSIA 153

Length = 253

>gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 36/216 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVK-------EIPSA 80
           +  T +VTGAS G+G + A+  A  G  VI+  R+    + V +AIV+        I   
Sbjct: 5   SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFD 64

Query: 81  KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIEL---QFATN 137
            + A E +    A+    A     QG+ L+ +++ AG   +   L    +     Q+  N
Sbjct: 65  LMSAEEKEFEQFAA--TIAEAT--QGK-LDGIVHCAGYFYALSPLDFQTVAEWVNQYRIN 119

Query: 138 HLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGA 197
            +    LT  L   +K++   S      V    E+H                 AY  +G 
Sbjct: 120 TVAPMGLTRALFPLLKQSPDAS------VIFVGESHGET------------PKAY--WGG 159

Query: 198 YGQSKLANILHAKELAKHLKEDGVNITANSLHPGSI 233
           +G SK A + +  ++A    E   N+ AN L PG I
Sbjct: 160 FGASK-AALNYLCKVAADEWERFGNLRANVLVPGPI 194

Length = 239

>gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 31  TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPS--AKVDAMEL 87
           T ++TG   G+G   AR LA RG   +++  R+         A++ E+ +  A+V  +  
Sbjct: 2   TYLITGGLGGLGRALARWLAERGARRLVLLSRS-GPDAPGAAALLAELEAAGARVTVVAC 60

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKD 128
           DV+   ++    +   +   PL  +I+ AG++    + S  
Sbjct: 61  DVADRDALAAVLAAIPAVEGPLTGVIHAAGVLDDGVLASLT 101

It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180

>gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 48/220 (21%), Positives = 80/220 (36%), Gaps = 47/220 (21%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-----------AGKDVREAIVKE 76
           +G T  +TGAS GIG   A   A  G ++++A +              A +++  A  + 
Sbjct: 5   SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQA 64

Query: 77  IPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQF 134
           +P      +  DV     V    ++   +   ++I +NNA    +           +L  
Sbjct: 65  LP------LVGDVRDEDQVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQ 118

Query: 135 ATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS----EAHRFAYSEGIRFDKINDES 190
             N  G FL++   L  +KK     S    I+ +S     +   FA              
Sbjct: 119 QINVRGTFLVSQACLPHLKK-----SENPHILTLSPPLNLDPKWFAPH------------ 161

Query: 191 AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHP 230
                 AY  +K    L    LA+  ++DG  I  N+L P
Sbjct: 162 -----TAYTMAKYGMSLCTLGLAEEFRDDG--IAVNALWP 194

Length = 273

>gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 50/212 (23%), Positives = 80/212 (37%), Gaps = 34/212 (16%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
            ++TG++ GIG   A  LA  G  +I+        +     + +E    K  A   +V+ 
Sbjct: 12  ILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE--GIKAHAAPFNVTH 69

Query: 92  LASVRKFASEYNSQGRPLNILINNAGIMAS-PFM-LSKDNIELQFATNHLGHFLLTHLLL 149
              V            P+++LINNAGI    PF    +       A N    FL++  + 
Sbjct: 70  KQEVEAAIEHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVA 129

Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             M K      + G+I+N+ S               +  E   ++   Y  SK A  +  
Sbjct: 130 RYMVK-----RQAGKIINICS---------------MQSELGRDTITPYAASKGAVKMLT 169

Query: 210 K----ELAKHLKEDGVNITANSLHPGSIVTNL 237
           +    ELA+H      NI  N + PG   T +
Sbjct: 170 RGMCVELARH------NIQVNGIAPGYFKTEM 195

Length = 254

>gnl|CDD|135637 PRK05876, PRK05876, short chain dehydrogenase; Provisional

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 56/239 (23%), Positives = 90/239 (37%), Gaps = 43/239 (17%)

Query: 24  GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD 83
           G  G G  A++TG +SGIG  T    A RG  V++        K      V  + +   D
Sbjct: 3   GFPGRG--AVITGGASGIGLATGTEFARRGARVVLG----DVDKPGLRQAVNHLRAEGFD 56

Query: 84  A--MELDVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPF--MLSKD-----NIELQ 133
              +  DV     V   A E       ++++ +NAGI +  P   M   D     +++L 
Sbjct: 57  VHGVMCDVRHREEVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLW 116

Query: 134 FATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYN 193
            + + +  FL   L   T       +S  G + N                          
Sbjct: 117 GSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNA------------------------- 151

Query: 194 SFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFSIS 252
             GAYG +K   +  A+ LA+ +  DG+ ++   L P  + TNL   +  +RG   + S
Sbjct: 152 GLGAYGVAKYGVVGLAETLAREVTADGIGVSV--LCPMVVETNLVANSERIRGAACAQS 208

Length = 275

>gnl|CDD|187631 cd05373, SDR_c10, classical (c) SDR, subgroup 10

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A V GA  G+G   AR  A  G  V +A R  A  + +   I+++   +   A+  D  
Sbjct: 1   VAAVVGAGDGLGAAIARRFAAEGFSVALAARREAKLEALLVDIIRDAGGSAK-AVPTDAR 59

Query: 91  SLASVRKFASEYNSQGRPLNILINNAG 117
               V         +  PL +L+ NAG
Sbjct: 60  DEDEVIALFDLIEEEIGPLEVLVYNAG 86

This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 238

>gnl|CDD|183716 PRK12744, PRK12744, short chain dehydrogenase; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   ++ G +  +G   AR LA +G   +    N AA K   E  V  + +A   A+  
Sbjct: 7   KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAF 66

Query: 88  --DVSSLASVRK-FASEYNSQGRPLNILINNAG-IMASPF 123
             D+++ A+V K F     + GRP +I IN  G ++  P 
Sbjct: 67  QADLTTAAAVEKLFDDAKAAFGRP-DIAINTVGKVLKKPI 105

Length = 257

>gnl|CDD|236173 PRK08177, PRK08177, short chain dehydrogenase; Provisional

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           TA++ GAS G+G      L  RG  V   VR        ++  ++ +P   ++ ++++  
Sbjct: 3   TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQ-----QDTALQALPGVHIEKLDMN-- 55

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIM 119
             AS+ +       QG+  ++L  NAGI 
Sbjct: 56  DPASLDQLLQRL--QGQRFDLLFVNAGIS 82

Length = 225

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 37/189 (19%), Positives = 58/189 (30%), Gaps = 27/189 (14%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL 92
           +VTG +  IG+     L   G  V    R       +            V+ + LD++  
Sbjct: 4   LVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLS---------GVEFVVLDLTDR 54

Query: 93  ASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTM 152
             V + A            +I+ A   + P   +  +       N  G    T  LL+  
Sbjct: 55  DLVDELAKGVPD------AVIHLAAQSSVP-DSNASDPAEFLDVNVDG----TLNLLEAA 103

Query: 153 KKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKEL 212
           +    K     R V  SS +  +     +  D   D         YG SKLA     +  
Sbjct: 104 RAAGVK-----RFVFASSVSVVYGDPPPLPID--EDLGPPRPLNPYGVSKLAAEQLLRAY 156

Query: 213 AKHLKEDGV 221
           A+      V
Sbjct: 157 ARLYGLPVV 165

Length = 314

>gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl reductase

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 20/126 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA--GKDVREAIVKEIPSAKVDAMELD 88
           T +V GA+  IG    R L  RG +V+   R  +   GK+ +E   KE+P A+V  +  D
Sbjct: 62  TVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEV--VFGD 119

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKD--NIELQFATNHL------- 139
           V+   S+RK      S+G P++++++    +AS     KD   I+ Q   N L       
Sbjct: 120 VTDADSLRKVL---FSEGDPVDVVVS---CLASRTGGVKDSWKIDYQATKNSLDAGREVG 173

Query: 140 -GHFLL 144
             HF+L
Sbjct: 174 AKHFVL 179

Length = 390

>gnl|CDD|180413 PRK06128, PRK06128, oxidoreductase; Provisional

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 53/214 (24%), Positives = 82/214 (38%), Gaps = 31/214 (14%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL- 87
           G  A++TGA SGIG  TA   A  G  + +        +D  E +V+ I +    A+ L 
Sbjct: 55  GRKALITGADSGIGRATAIAFAREGADIALNYLP-EEEQDAAE-VVQLIQAEGRKAVALP 112

Query: 88  -DVSSLASVRKFASEYNSQGRPLNILINNAG---IMASPFMLSKDNIELQFATNHLGHFL 143
            D+   A  R+       +   L+IL+N AG    +     ++ +  +  F TN    F 
Sbjct: 113 GDLKDEAFCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFW 172

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
           L    +  +   A        I+N  S               I       +   Y  +K 
Sbjct: 173 LCKAAIPHLPPGAS-------IINTGS---------------IQSYQPSPTLLDYASTKA 210

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           A +   K LAK + E G  I  N++ PG + T L
Sbjct: 211 AIVAFTKALAKQVAEKG--IRVNAVAPGPVWTPL 242

Length = 300

>gnl|CDD|212497 cd11731, Lin1944_like_SDR_c, Lin1944 and related proteins, classical (c) SDRs

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 25/125 (20%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
            IV GA+  IG   A++L+  G  VI       AG+   +  V             D++ 
Sbjct: 1   IIVIGATGTIGLAVAQLLSAHGHEVI------TAGRSSGDYQV-------------DITD 41

Query: 92  LASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTHLLL 149
            AS++        +    + +++ AG    A    L+  + +    +  LG   L    L
Sbjct: 42  EASIKALF----EKVGHFDAIVSTAGDAEFAPLAELTDADFQRGLNSKLLGQINLVRHGL 97

Query: 150 DTMKK 154
             +  
Sbjct: 98  PYLND 102

Lin1944 protein from Listeria Innocua is a classical SDR, it contains a glycine-rich motif similar to the canonical motif of the SDR NAD(P)-binding site. However, the typical SDR active site residues are absent in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 198

>gnl|CDD|212496 cd11730, Tthb094_like_SDR_c, Tthb094 and related proteins, classical (c) SDRs

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 41/211 (19%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           A++ GA+ GIG   AR LA RG  ++++ R+  A       +  E+ +    A   DV++
Sbjct: 1   ALILGATGGIGRALARALAGRGWRLLLSGRDAGA----LAGLAAEVGALARPA---DVAA 53

Query: 92  LASVRKFASEYNSQGRPLNILINNAG-IMASPFM-LSKDNIELQFATNHLG-HFLLTHLL 148
              V   A E      PL++L+  AG I+  P               N  G   +L H L
Sbjct: 54  ELEVWALAQELG----PLDLLVYAAGAILGKPLARTKPAAWRRILDANLTGAALVLKHAL 109

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
                  A       R+V +       AY E +               AY  +K A   +
Sbjct: 110 ---ALLAAG-----ARLVFLG------AYPELVMLPG---------LSAYAAAKAALEAY 146

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +   K ++  G+ +T   + P ++ T L+ 
Sbjct: 147 VEVARKEVR--GLRLTL--VRPPAVDTGLWA 173

Tthb094 from Thermus Thermophilus is a classical SDR which binds NADP. Members of this subgroup contain the YXXXK active site characteristic of SDRs. Also, an upstream Asn residue of the canonical catalytic tetrad is partially conserved in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 206

>gnl|CDD|168204 PRK05717, PRK05717, oxidoreductase; Validated

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 62/209 (29%), Positives = 88/209 (42%), Gaps = 25/209 (11%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
               G  A+VTGA+ GIG   A  L   G  V++A  +   G  V +A+ +   +A   A
Sbjct: 6   PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGE---NAWFIA 62

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLL 144
           M  DV+  A V    +E   Q   L+ L+ NA I A P   + +++ L      L   L 
Sbjct: 63  M--DVADEAQVAAGVAEVLGQFGRLDALVCNAAI-ADPHNTTLESLSLAHWNRVLAVNLT 119

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
             +LL        ++   G IVN++S   R   SE        D  AY    A  +  L 
Sbjct: 120 GPMLLAKHCAPYLRAHN-GAIVNLAST--RARQSEP-------DTEAY----AASKGGLL 165

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSI 233
            + HA  LA  L   G  I  N++ PG I
Sbjct: 166 ALTHA--LAISL---GPEIRVNAVSPGWI 189

Length = 255

>gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 38/218 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A++TG  SGIG          G  V +  R+  A K    ++ +      V  +E 
Sbjct: 5   HGQVALITGGGSGIGRALVERFLAEGARVAVLERS--AEK--LASLRQRFG-DHVLVVEG 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNI-----ELQFATNHL 139
           DV+S A  ++   +       L+  + NAGI     S   +  + +     E+ F  N  
Sbjct: 60  DVTSYADNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEI-FNVNVK 118

Query: 140 GHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
           G+ L     L  +K +       G ++   S +  +    G                 Y 
Sbjct: 119 GYLLGAKAALPALKAS------GGSMIFTLSNSSFYPGGGGP---------------LYT 157

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            SK A +   ++LA  L      I  N + PG  VT+L
Sbjct: 158 ASKHAVVGLVRQLAYELAPK---IRVNGVAPGGTVTDL 192

Length = 263

>gnl|CDD|236116 PRK07856, PRK07856, short chain dehydrogenase; Provisional

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 45/170 (26%), Positives = 65/170 (38%), Gaps = 49/170 (28%)

Query: 24  GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN---MAAGK-------DVREAI 73
            +D TG   +VTG + GIG   AR     G  V++  R       G+       DVR+  
Sbjct: 1   NLDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPETVDGRPAEFHAADVRDP- 59

Query: 74  VKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDN---- 129
                  +V A+         V      +   GR L++L+NNAG   SP+ L+ +     
Sbjct: 60  ------DQVAAL---------VDAIVERH---GR-LDVLVNNAG--GSPYALAAEASPRF 98

Query: 130 ----IELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSE-AHR 174
               +EL    N L   L+       M    Q+    G IVN+ S    R
Sbjct: 99  HEKIVEL----NLLAPLLVAQAANAVM----QQQPGGGSIVNIGSVSGRR 140

Length = 252

>gnl|CDD|187641 cd08936, CR_SDR_c, Porcine peroxisomal carbonyl reductase like, classical (c) SDR

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 53/217 (24%), Positives = 82/217 (37%), Gaps = 31/217 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
               A+VT ++ GIG   AR LA  G HV+++ R           +  E     V     
Sbjct: 9   ANKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQQNVDRAVATLQGE--GLSVTGTVC 66

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPF----MLSKDNI-ELQFATNHLGHF 142
            V       +  +   +    ++IL++NA +  +PF    + S + + +     N     
Sbjct: 67  HVGKAEDRERLVATAVNLHGGVDILVSNAAV--NPFFGNILDSTEEVWDKILDVNVKATA 124

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
           L+T  ++  M+K        G +V VSS A   A+              +   G Y  SK
Sbjct: 125 LMTKAVVPEMEKRGG-----GSVVIVSSVA---AF------------HPFPGLGPYNVSK 164

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            A +   K LA  L     NI  N L PG I T+   
Sbjct: 165 TALLGLTKNLAPEL--APRNIRVNCLAPGLIKTSFSS 199

This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256

>gnl|CDD|171822 PRK12938, PRK12938, acetyacetyl-CoA reductase; Provisional

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 33/214 (15%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD--AMELDV 89
           A VTG   GIGT   + L   G  V   V         R   +++  +   D  A E +V
Sbjct: 6   AYVTGGMGGIGTSICQRLHKDGFKV---VAGCGPNSPRRVKWLEDQKALGFDFIASEGNV 62

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLTHL 147
               S +    +  ++   +++L+NNAGI        +++++      TN    F +T  
Sbjct: 63  GDWDSTKAAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQ 122

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
           ++D M +        GRI+N+SS               +N +     FG    S     +
Sbjct: 123 VIDGMVERGW-----GRIINISS---------------VNGQKG--QFGQTNYSTAKAGI 160

Query: 208 HA--KELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           H     LA+ +   GV  T N++ PG I T++ +
Sbjct: 161 HGFTMSLAQEVATKGV--TVNTVSPGYIGTDMVK 192

Length = 246

>gnl|CDD|187606 cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 53/220 (24%), Positives = 81/220 (36%), Gaps = 38/220 (17%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM 85
              G  A++TG  SG+G          G  V +  R+       + A ++      V  +
Sbjct: 1   WLKGEVALITGGGSGLGRALVERFVAEGAKVAVLDRSAE-----KVAELRADFGDAVVGV 55

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNI-----ELQFATN 137
           E DV SLA   +  +    +   L+  I NAGI     S   + ++ +     EL F  N
Sbjct: 56  EGDVRSLADNERAVARCVERFGKLDCFIGNAGIWDYSTSLVDIPEEKLDEAFDEL-FHIN 114

Query: 138 HLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGA 197
             G+ L     L  +  T      EG ++   S A  +    G                 
Sbjct: 115 VKGYILGAKAALPALYAT------EGSVIFTVSNAGFYPGGGGP---------------L 153

Query: 198 YGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           Y  SK A +   K+LA  L     +I  N + PG +VT+L
Sbjct: 154 YTASKHAVVGLVKQLAYEL---APHIRVNGVAPGGMVTDL 190

cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|177895 PLN02253, PLN02253, xanthoxin dehydrogenase

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 57/222 (25%), Positives = 89/222 (40%), Gaps = 47/222 (21%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD---AM 85
           G  A+VTG ++GIG    R+    G  V +       G++V +++  E           +
Sbjct: 18  GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV 77

Query: 86  ELDVSSL--ASVRKFASEYNSQGRPLNILINNAGIMASPFM----LSKDNIELQFATNHL 139
           E DVS     +V KF +        L+I++NNAG+   P      +     E  F  N  
Sbjct: 78  EDDVSRAVDFTVDKFGT--------LDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVK 129

Query: 140 GHFLLTHLLLDTMKKTAQK--SSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG- 196
           G FL        MK  A+     ++G IV++ S A                 SA    G 
Sbjct: 130 GVFL-------GMKHAARIMIPLKKGSIVSLCSVA-----------------SAIGGLGP 165

Query: 197 -AYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            AY  SK A +   + +A  L + G+ +  N + P ++ T L
Sbjct: 166 HAYTGSKHAVLGLTRSVAAELGKHGIRV--NCVSPYAVPTAL 205

Length = 280

>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 34 VTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLA 93
          V GA+   G    + L  RG  V    RN             + P+  V  ++ D+  LA
Sbjct: 3  VIGATGKTGRRLVKELLARGHQVTALSRN-----------PSKAPAPGVTPVQKDLFDLA 51

Query: 94 SVRK 97
           + +
Sbjct: 52 DLAE 55

Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	100.0
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	100.0
COG0300	265	DltE Short-chain dehydrogenases of various substra	100.0
PRK08339	263	short chain dehydrogenase; Provisional	100.0
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	100.0
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	100.0
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK07062	265	short chain dehydrogenase; Provisional	100.0
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK07063	260	short chain dehydrogenase; Provisional	100.0
PRK07478	254	short chain dehydrogenase; Provisional	100.0
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	100.0
PRK08303	305	short chain dehydrogenase; Provisional	100.0
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	100.0
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
KOG0725	270	consensus Reductases with broad range of substrate	100.0
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	100.0
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK08589	272	short chain dehydrogenase; Validated	100.0
PRK08862	227	short chain dehydrogenase; Provisional	100.0
PRK05867	253	short chain dehydrogenase; Provisional	100.0
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK05854	313	short chain dehydrogenase; Provisional	100.0
PRK06139	330	short chain dehydrogenase; Provisional	100.0
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	100.0
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	100.0
PRK05876	275	short chain dehydrogenase; Provisional	100.0
PRK07791	286	short chain dehydrogenase; Provisional	100.0
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK06114	254	short chain dehydrogenase; Provisional	100.0
PRK08085	254	gluconate 5-dehydrogenase; Provisional	100.0
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK05872	296	short chain dehydrogenase; Provisional	100.0
PRK08265	261	short chain dehydrogenase; Provisional	100.0
PRK08277	278	D-mannonate oxidoreductase; Provisional	100.0
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	100.0
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	100.0
PLN02253	280	xanthoxin dehydrogenase	100.0
PRK07035	252	short chain dehydrogenase; Provisional	100.0
PRK09242	257	tropinone reductase; Provisional	100.0
PRK06172	253	short chain dehydrogenase; Provisional	100.0
PRK07109	334	short chain dehydrogenase; Provisional	100.0
PRK06197	306	short chain dehydrogenase; Provisional	100.0
PRK06398	258	aldose dehydrogenase; Validated	100.0
PRK07097	265	gluconate 5-dehydrogenase; Provisional	100.0
PRK12747	252	short chain dehydrogenase; Provisional	100.0
PRK05599	246	hypothetical protein; Provisional	100.0
PRK07523	255	gluconate 5-dehydrogenase; Provisional	100.0
PRK07985	294	oxidoreductase; Provisional	100.0
PRK07831	262	short chain dehydrogenase; Provisional	100.0
PRK06196	315	oxidoreductase; Provisional	100.0
PRK06128	300	oxidoreductase; Provisional	100.0
PRK08340	259	glucose-1-dehydrogenase; Provisional	100.0
PRK08643	256	acetoin reductase; Validated	100.0
PLN02780	320	ketoreductase/ oxidoreductase	100.0
PRK05866	293	short chain dehydrogenase; Provisional	100.0
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	100.0
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	100.0
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	100.0
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	100.0
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	100.0
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	100.0
PRK08278	273	short chain dehydrogenase; Provisional	100.0
PRK07825	273	short chain dehydrogenase; Provisional	100.0
PRK06125	259	short chain dehydrogenase; Provisional	100.0
PRK08936	261	glucose-1-dehydrogenase; Provisional	100.0
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK07067	257	sorbitol dehydrogenase; Provisional	100.0
KOG1208	314	consensus Dehydrogenases with different specificit	100.0
PRK05717	255	oxidoreductase; Validated	100.0
PRK06194	287	hypothetical protein; Provisional	100.0
PRK07677	252	short chain dehydrogenase; Provisional	100.0
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK06484	520	short chain dehydrogenase; Validated	100.0
PRK06124	256	gluconate 5-dehydrogenase; Provisional	100.0
PRK05993	277	short chain dehydrogenase; Provisional	100.0
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	100.0
PRK07024	257	short chain dehydrogenase; Provisional	100.0
PRK06523	260	short chain dehydrogenase; Provisional	100.0
PRK08628	258	short chain dehydrogenase; Provisional	100.0
PRK07890	258	short chain dehydrogenase; Provisional	100.0
PRK05855	582	short chain dehydrogenase; Validated	100.0
PRK12743	256	oxidoreductase; Provisional	100.0
PRK07576	264	short chain dehydrogenase; Provisional	100.0
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	100.0
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK06841	255	short chain dehydrogenase; Provisional	100.0
PRK07814	263	short chain dehydrogenase; Provisional	100.0
PRK06940	275	short chain dehydrogenase; Provisional	100.0
PRK06500	249	short chain dehydrogenase; Provisional	100.0
PRK07856	252	short chain dehydrogenase; Provisional	100.0
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	100.0
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	100.0
PRK08226	263	short chain dehydrogenase; Provisional	100.0
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK06484	520	short chain dehydrogenase; Validated	100.0
PRK07904	253	short chain dehydrogenase; Provisional	100.0
PRK07774	250	short chain dehydrogenase; Provisional	100.0
PRK09186	256	flagellin modification protein A; Provisional	100.0
PRK06182	273	short chain dehydrogenase; Validated	100.0
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	100.0
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	100.0
PRK05650	270	short chain dehydrogenase; Provisional	100.0
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK12938	246	acetyacetyl-CoA reductase; Provisional	100.0
PRK08251	248	short chain dehydrogenase; Provisional	100.0
PRK06483	236	dihydromonapterin reductase; Provisional	100.0
PRK08703	239	short chain dehydrogenase; Provisional	100.0
PRK12939	250	short chain dehydrogenase; Provisional	100.0
PRK06180	277	short chain dehydrogenase; Provisional	100.0
PRK07454	241	short chain dehydrogenase; Provisional	100.0
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	100.0
PRK06138	252	short chain dehydrogenase; Provisional	100.0
PRK09072	263	short chain dehydrogenase; Provisional	100.0
PRK06701	290	short chain dehydrogenase; Provisional	100.0
PRK07453	322	protochlorophyllide oxidoreductase; Validated	100.0
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	100.0
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	100.0
PRK06949	258	short chain dehydrogenase; Provisional	100.0
PRK08263	275	short chain dehydrogenase; Provisional	100.0
PRK12937	245	short chain dehydrogenase; Provisional	100.0
PRK07832	272	short chain dehydrogenase; Provisional	100.0
PRK05875	276	short chain dehydrogenase; Provisional	100.0
TIGR02415	254	23BDH acetoin reductases. One member of this famil	100.0
PRK12744	257	short chain dehydrogenase; Provisional	100.0
PRK06179	270	short chain dehydrogenase; Provisional	100.0
PRK07069	251	short chain dehydrogenase; Validated	100.0
PRK06914	280	short chain dehydrogenase; Provisional	100.0
PRK08267	260	short chain dehydrogenase; Provisional	100.0
PLN00015	308	protochlorophyllide reductase	99.98
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.98
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.98
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.98
PRK05693	274	short chain dehydrogenase; Provisional	99.98
PRK06057	255	short chain dehydrogenase; Provisional	99.98
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.98
PRK06123	248	short chain dehydrogenase; Provisional	99.98
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.98
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.98
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.98
PRK10538	248	malonic semialdehyde reductase; Provisional	99.97
PRK09134	258	short chain dehydrogenase; Provisional	99.97
PRK05884	223	short chain dehydrogenase; Provisional	99.97
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.97
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.97
PRK06198	260	short chain dehydrogenase; Provisional	99.97
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	99.97
PRK12746	254	short chain dehydrogenase; Provisional	99.97
PRK07775	274	short chain dehydrogenase; Provisional	99.97
PRK06482	276	short chain dehydrogenase; Provisional	99.97
PRK12742	237	oxidoreductase; Provisional	99.97
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.97
COG1028	251	FabG Dehydrogenases with different specificities (	99.97
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.97
PRK07201	657	short chain dehydrogenase; Provisional	99.97
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.97
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.97
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	99.97
PRK06181	263	short chain dehydrogenase; Provisional	99.97
PRK07102	243	short chain dehydrogenase; Provisional	99.97
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.97
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	99.97
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.97
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.97
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.97
PRK06101	240	short chain dehydrogenase; Provisional	99.97
PRK07326	237	short chain dehydrogenase; Provisional	99.97
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.97
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.97
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	99.97
PRK12827	249	short chain dehydrogenase; Provisional	99.97
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.97
PRK12828	239	short chain dehydrogenase; Provisional	99.97
PRK07074	257	short chain dehydrogenase; Provisional	99.97
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.97
PRK06924	251	short chain dehydrogenase; Provisional	99.97
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.97
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.97
PRK08177	225	short chain dehydrogenase; Provisional	99.97
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.97
PRK07578	199	short chain dehydrogenase; Provisional	99.97
PRK07577	234	short chain dehydrogenase; Provisional	99.97
PRK07060	245	short chain dehydrogenase; Provisional	99.97
PRK09291	257	short chain dehydrogenase; Provisional	99.97
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.96
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.96
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.96
PRK07806	248	short chain dehydrogenase; Provisional	99.96
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.96
PRK09135	249	pteridine reductase; Provisional	99.96
PRK07023	243	short chain dehydrogenase; Provisional	99.96
PRK08264	238	short chain dehydrogenase; Validated	99.96
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.96
PRK12829	264	short chain dehydrogenase; Provisional	99.96
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.96
PRK08324	681	short chain dehydrogenase; Validated	99.96
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.96
PRK07041	230	short chain dehydrogenase; Provisional	99.96
PRK08017	256	oxidoreductase; Provisional	99.95
PRK06953	222	short chain dehydrogenase; Provisional	99.95
PRK12367	245	short chain dehydrogenase; Provisional	99.95
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	99.94
PRK08219	227	short chain dehydrogenase; Provisional	99.92
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.92
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	99.92
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.91
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	99.91
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	99.91
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.9
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.9
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.89
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.88
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.88
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.87
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	99.86
PLN03209	576	translocon at the inner envelope of chloroplast su	99.86
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.86
PLN02214	342	cinnamoyl-CoA reductase	99.85
PLN02653	340	GDP-mannose 4,6-dehydratase	99.85
PLN02583	297	cinnamoyl-CoA reductase	99.85
PLN02650	351	dihydroflavonol-4-reductase	99.84
PLN02572	442	UDP-sulfoquinovose synthase	99.84
PLN00198	338	anthocyanidin reductase; Provisional	99.84
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.84
PRK06720	169	hypothetical protein; Provisional	99.84
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.84
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.83
PLN02240	352	UDP-glucose 4-epimerase	99.82
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.82
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.82
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.81
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.8
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.79
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.79
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.78
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.78
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.78
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.78
PLN02686	367	cinnamoyl-CoA reductase	99.77
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.76
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.74
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.74
PLN02427	386	UDP-apiose/xylose synthase	99.72
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.7
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.69
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.69
PLN02260	668	probable rhamnose biosynthetic enzyme	99.69
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.68
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.68
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.68
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.67
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.66
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.64
PLN02206	442	UDP-glucuronate decarboxylase	99.64
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.63
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.63
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.62
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.6
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.59
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	99.55
PLN02996	491	fatty acyl-CoA reductase	99.53
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.53
PRK07201	657	short chain dehydrogenase; Provisional	99.51
PLN02778	298	3,5-epimerase/4-reductase	99.51
CHL00194	317	ycf39 Ycf39; Provisional	99.5
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.5
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	99.47
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	99.42
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.4
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	99.37
PLN02503	605	fatty acyl-CoA reductase 2	99.37
PLN02260	668	probable rhamnose biosynthetic enzyme	99.35
PRK05865	854	hypothetical protein; Provisional	99.34
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	99.34
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	99.27
PF08643	299	DUF1776: Fungal family of unknown function (DUF177	99.27
COG3320	382	Putative dehydrogenase domain of multifunctional n	99.26
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.22
PRK08309	177	short chain dehydrogenase; Provisional	99.17
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	99.12
PLN00016	378	RNA-binding protein; Provisional	99.12
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	99.1
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	98.99
PRK12320	699	hypothetical protein; Provisional	98.98
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	98.89
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.84
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	98.84
PRK12548	289	shikimate 5-dehydrogenase; Provisional	98.83
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	98.83
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	98.78
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	98.75
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.75
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.7
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	98.61
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	98.57
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	98.48
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.47
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.42
COG4982	866	3-oxoacyl-[acyl-carrier protein]	98.39
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	98.39
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	98.36
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.34
KOG2733	423	consensus Uncharacterized membrane protein [Functi	98.33
KOG2774	366	consensus NAD dependent epimerase [General functio	98.3
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.28
PRK09620	229	hypothetical protein; Provisional	98.28
PLN00106	323	malate dehydrogenase	98.24
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.2
COG2910	211	Putative NADH-flavin reductase [General function p	98.12
PTZ00325	321	malate dehydrogenase; Provisional	98.08
PRK14982	340	acyl-ACP reductase; Provisional	98.08
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.98
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	97.76
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.75
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.7
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.69
COG3268	382	Uncharacterized conserved protein [Function unknow	97.68
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.67
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.66
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	97.66
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	97.64
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	97.63
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	97.61
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.54
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.5
PRK15116	268	sulfur acceptor protein CsdL; Provisional	97.49
PRK05086	312	malate dehydrogenase; Provisional	97.48
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.46
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.46
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.46
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	97.43
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.43
PRK06849	389	hypothetical protein; Provisional	97.41
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.41
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.39
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.38
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	97.37
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.36
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.36
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.35
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.35
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.34
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.34
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	97.32
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.3
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.29
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.29
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.25
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.22
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.22
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	97.18
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.16
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.1
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	97.09
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	97.08
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.07
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	97.06
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	97.04
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	97.04
PRK08223	287	hypothetical protein; Validated	97.04
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	97.01
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.01
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.0
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.99
PRK14968	188	putative methyltransferase; Provisional	96.98
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	96.97
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.97
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	96.96
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.96
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	96.95
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.88
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.86
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	96.85
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.85
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	96.81
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	96.8
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.8
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.78
PTZ00117	319	malate dehydrogenase; Provisional	96.78
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.77
PRK04148	134	hypothetical protein; Provisional	96.76
PRK08328	231	hypothetical protein; Provisional	96.76
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.76
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.73
PRK07877	722	hypothetical protein; Provisional	96.72
PRK14851	679	hypothetical protein; Provisional	96.68
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.66
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.66
PLN02602	350	lactate dehydrogenase	96.64
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.63
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	96.62
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	96.61
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	96.6
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.59
PLN00203	519	glutamyl-tRNA reductase	96.59
PRK09496	453	trkA potassium transporter peripheral membrane com	96.56
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	96.56
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.55
PRK07411	390	hypothetical protein; Validated	96.53
PLN00112	444	malate dehydrogenase (NADP); Provisional	96.53
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	96.52
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.51
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.5
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.49
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.44
PRK06223	307	malate dehydrogenase; Reviewed	96.43
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	96.43
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	96.42
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.41
COG2130	340	Putative NADP-dependent oxidoreductases [General f	96.4
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.39
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	96.38
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.37
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.36
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	96.36
PRK14852	989	hypothetical protein; Provisional	96.32
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.3
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.24
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	96.23
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	96.22
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.21
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.18
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.18
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.17
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.17
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.14
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.13
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.12
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.12
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.11
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.1
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.07
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.06
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.03
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	96.02
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	96.01
PRK09496	453	trkA potassium transporter peripheral membrane com	96.0
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.99
PRK05442	326	malate dehydrogenase; Provisional	95.99
PRK08655	437	prephenate dehydrogenase; Provisional	95.97
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.96
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	95.95
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	95.9
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	95.89
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	95.88
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.87
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.84
KOG2013	603	consensus SMT3/SUMO-activating complex, catalytic	95.82
PRK13243	333	glyoxylate reductase; Reviewed	95.81
PLN02740	381	Alcohol dehydrogenase-like	95.8
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.78
PRK12480	330	D-lactate dehydrogenase; Provisional	95.76
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	95.75
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	95.74
COG3007	398	Uncharacterized paraquat-inducible protein B [Func	95.74
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.74
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	95.73
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	95.7
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.68
PRK06487	317	glycerate dehydrogenase; Provisional	95.68
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.67
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	95.66
PLN02586	360	probable cinnamyl alcohol dehydrogenase	95.66
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.64
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	95.6
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	95.59
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.58
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	95.57
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.55
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	95.55
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.55
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	95.51
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	95.51
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.51
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	95.5
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	95.5
PLN02928	347	oxidoreductase family protein	95.5
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.49
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	95.49
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	95.48
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	95.42
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.4
PTZ00354	334	alcohol dehydrogenase; Provisional	95.38
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	95.38
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.37
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.33
KOG4288	283	consensus Predicted oxidoreductase [General functi	95.31
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	95.31
PLN02178	375	cinnamyl-alcohol dehydrogenase	95.23
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	95.21
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.21
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	95.19
PRK13771	334	putative alcohol dehydrogenase; Provisional	95.17
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	95.16

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.7e-41  Score=284.12  Aligned_cols=200  Identities=31%  Similarity=0.296  Sum_probs=180.8

Q ss_pred             cccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           21 VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        21 ~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      +..++.+.||+|+|||||+|||+++|.+|+++|++++++.|..+.++.+.+++.+..+..+++.++||++|++++.++++
T Consensus         4 ~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~   83 (282)
T KOG1205|consen    4 NLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVE   83 (282)
T ss_pred             cccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHH
Confidence            44567899999999999999999999999999999999999999999999999887655579999999999999999999


Q ss_pred             HHhcCCCCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          101 EYNSQGRPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      ++.++||++|+||||||+...  ..+.+.+++.+.+++|++|+..++|+++|+|++     ++.|+||++||++|..   
T Consensus        84 ~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~-----r~~GhIVvisSiaG~~---  155 (282)
T KOG1205|consen   84 WAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKK-----RNDGHIVVISSIAGKM---  155 (282)
T ss_pred             HHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhh-----cCCCeEEEEecccccc---
Confidence            999999999999999998852  345678899999999999999999999999998     4469999999999988   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                  +.+..+.|++||+|+.+|+++|+.|+...+..|++ +|+||+|+|++....
T Consensus       156 ------------~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i-~V~PG~V~Te~~~~~  205 (282)
T KOG1205|consen  156 ------------PLPFRSIYSASKHALEGFFETLRQELIPLGTIIII-LVSPGPIETEFTGKE  205 (282)
T ss_pred             ------------CCCcccccchHHHHHHHHHHHHHHHhhccCceEEE-EEecCceeecccchh
Confidence                        55566799999999999999999999998867888 999999999966543

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=100.00  E-value=2.1e-40  Score=268.57  Aligned_cols=194  Identities=30%  Similarity=0.361  Sum_probs=178.5

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ..+++|+++|||||+|||.++|++|++.|++|++++|+.++++++.+++.+    ..+....+|++|.++++.+++.+.+
T Consensus         2 ~~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~----~~~~~~~~DVtD~~~~~~~i~~~~~   77 (246)
T COG4221           2 TTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA----GAALALALDVTDRAAVEAAIEALPE   77 (246)
T ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc----CceEEEeeccCCHHHHHHHHHHHHH
Confidence            346779999999999999999999999999999999999999999998854    4789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCC--CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      +|+++|+||||||..  .+..+.+.++|+.|+++|+.|.++.+++.+|.|..     ++.|.|||+||++|..       
T Consensus        78 ~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~-----r~~G~IiN~~SiAG~~-------  145 (246)
T COG4221          78 EFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVE-----RKSGHIINLGSIAGRY-------  145 (246)
T ss_pred             hhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHh-----cCCceEEEeccccccc-------
Confidence            999999999999977  35667899999999999999999999999999998     6788999999999988       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCcc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGIL  244 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~~  244 (255)
                              ++++...|+++|+++..|.+.++.|+...+  |||.+|+||.+.|..+....+.
T Consensus       146 --------~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~--IRVt~I~PG~v~~~~~s~v~~~  197 (246)
T COG4221         146 --------PYPGGAVYGATKAAVRAFSLGLRQELAGTG--IRVTVISPGLVETTEFSTVRFE  197 (246)
T ss_pred             --------cCCCCccchhhHHHHHHHHHHHHHHhcCCC--eeEEEecCceecceecccccCC
Confidence                    677889999999999999999999998777  9999999999988877666665

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=100.00  E-value=5.6e-40  Score=273.02  Aligned_cols=191  Identities=29%  Similarity=0.430  Sum_probs=180.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .++++++||||||+|||.++|++|+++|++|++++|+++++.++.+++...+ +.++.++++|+++++++..+.+++.+.
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~~~   81 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELKER   81 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHHhc
Confidence            4568999999999999999999999999999999999999999999999876 678999999999999999999999999


Q ss_pred             CCCeeEEEEccCCC--CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      .+.||+||||||+.  .++.+.+.++..+++++|+.+.+.++++++|.|.+     ++.|.|||++|.+|..        
T Consensus        82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~-----~~~G~IiNI~S~ag~~--------  148 (265)
T COG0300          82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVE-----RGAGHIINIGSAAGLI--------  148 (265)
T ss_pred             CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCceEEEEechhhcC--------
Confidence            99999999999977  46788999999999999999999999999999998     6789999999999887        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                             +.+..+.|++||+++.+|+++|+.|+...|  |+|.+|+||++.|+++.
T Consensus       149 -------p~p~~avY~ATKa~v~~fSeaL~~EL~~~g--V~V~~v~PG~~~T~f~~  195 (265)
T COG0300         149 -------PTPYMAVYSATKAFVLSFSEALREELKGTG--VKVTAVCPGPTRTEFFD  195 (265)
T ss_pred             -------CCcchHHHHHHHHHHHHHHHHHHHHhcCCC--eEEEEEecCcccccccc
Confidence                   666789999999999999999999999888  99999999999999985

>PRK08339 short chain dehydrogenase; Provisional

Probab=100.00  E-value=9.8e-38  Score=264.61  Aligned_cols=194  Identities=27%  Similarity=0.270  Sum_probs=172.2

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+.. +.++.++++|++|+++++.+++++
T Consensus         2 ~~~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~   80 (263)
T PRK08339          2 LKIDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKEL   80 (263)
T ss_pred             CccCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHH
Confidence            3456889999999999999999999999999999999999888888887776542 457889999999999999999998


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      . ++|++|++|||||...  +..+.+.++|++++++|+.++++++++++|+|++     ++.|+||++||..+..     
T Consensus        81 ~-~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~-----~~~g~Ii~isS~~~~~-----  149 (263)
T PRK08339         81 K-NIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMER-----KGFGRIIYSTSVAIKE-----  149 (263)
T ss_pred             H-hhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCCEEEEEcCccccC-----
Confidence            6 5899999999999763  3567889999999999999999999999999987     4568999999988654     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +.+....|+++|+|+.+|+++++.|++++|  ||||+|+||+++|++...
T Consensus       150 ----------~~~~~~~y~asKaal~~l~~~la~el~~~g--IrVn~v~PG~v~T~~~~~  197 (263)
T PRK08339        150 ----------PIPNIALSNVVRISMAGLVRTLAKELGPKG--ITVNGIMPGIIRTDRVIQ  197 (263)
T ss_pred             ----------CCCcchhhHHHHHHHHHHHHHHHHHhcccC--eEEEEEEeCcCccHHHHH
Confidence                      445677899999999999999999999998  999999999999998653

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.5e-37  Score=258.36  Aligned_cols=195  Identities=26%  Similarity=0.363  Sum_probs=181.6

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +.-+++|++||||||++|+|+++|.+|+++|+.+++.|.+.+...+..++++..  + ++..+.||++|.+++.++.+++
T Consensus        32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~--g-~~~~y~cdis~~eei~~~a~~V  108 (300)
T KOG1201|consen   32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI--G-EAKAYTCDISDREEIYRLAKKV  108 (300)
T ss_pred             chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc--C-ceeEEEecCCCHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999876  3 8999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      ++.+|.+|++|||||+.+  +..+.++++.++.+++|+.|.|..+|+|+|.|.+     .+.|+||+++|++|..     
T Consensus       109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~-----~~~GHIV~IaS~aG~~-----  178 (300)
T KOG1201|consen  109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLE-----NNNGHIVTIASVAGLF-----  178 (300)
T ss_pred             HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHh-----cCCceEEEehhhhccc-----
Confidence            999999999999999884  5678999999999999999999999999999998     6789999999999998     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCc-EEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVN-ITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~-i~vn~v~PG~v~t~~~~~  240 (255)
                                +.++...|++||+|+.+|.+++..|+...+.+ |+...|+|++++|+|+..
T Consensus       179 ----------g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~  229 (300)
T KOG1201|consen  179 ----------GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDG  229 (300)
T ss_pred             ----------CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCC
Confidence                      55578899999999999999999999776543 999999999999999986

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=100.00  E-value=1.9e-38  Score=246.79  Aligned_cols=195  Identities=27%  Similarity=0.272  Sum_probs=174.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++.|+++||||++|||++|++.|+++|++|++.+++.+..++....+..   .++-..+.||+++++.++..+++..+.+
T Consensus        12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g---~~~h~aF~~DVS~a~~v~~~l~e~~k~~   88 (256)
T KOG1200|consen   12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGG---YGDHSAFSCDVSKAHDVQNTLEEMEKSL   88 (256)
T ss_pred             HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCC---CCccceeeeccCcHHHHHHHHHHHHHhc
Confidence            5679999999999999999999999999999999998877777766633   1467889999999999999999999999


Q ss_pred             CCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          107 RPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       107 g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      |.+++||||||+..+  ..-+..++|.+.+.+|+.|.|.++|++.+.+..+.   +++++|||+||+-|..         
T Consensus        89 g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~---~~~~sIiNvsSIVGki---------  156 (256)
T KOG1200|consen   89 GTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQ---QQGLSIINVSSIVGKI---------  156 (256)
T ss_pred             CCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhc---CCCceEEeehhhhccc---------
Confidence            999999999999865  34578899999999999999999999999976532   3456999999999887         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCcc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGIL  244 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~~  244 (255)
                            +.-++..|+++|+++.+|+|++|+|+++++  ||||.|+||+|.|||++..++.
T Consensus       157 ------GN~GQtnYAAsK~GvIgftktaArEla~kn--IrvN~VlPGFI~tpMT~~mp~~  208 (256)
T KOG1200|consen  157 ------GNFGQTNYAASKGGVIGFTKTAARELARKN--IRVNVVLPGFIATPMTEAMPPK  208 (256)
T ss_pred             ------ccccchhhhhhcCceeeeeHHHHHHHhhcC--ceEeEeccccccChhhhhcCHH
Confidence                  444788999999999999999999999998  9999999999999999988874

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=6.9e-37  Score=260.87  Aligned_cols=189  Identities=20%  Similarity=0.221  Sum_probs=162.4

Q ss_pred             CCCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        25 ~~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      |.+++|++|||||+  +|||+++|++|+++|++|++++|+.+ ..+..+++.+.. +.. .++++|++|+++++++++++
T Consensus         1 ~~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~-~~~-~~~~~Dv~d~~~v~~~~~~i   77 (274)
T PRK08415          1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQEL-GSD-YVYELDVSKPEHFKSLAESL   77 (274)
T ss_pred             CccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHhc-CCc-eEEEecCCCHHHHHHHHHHH
Confidence            45679999999997  89999999999999999999999853 334445554333 223 67899999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275          103 NSQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      .+++|++|++|||||+..      ++.+.+.++|++++++|+.++++++++++|+|.+       .|+||++||..+.. 
T Consensus        78 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~-------~g~Iv~isS~~~~~-  149 (274)
T PRK08415         78 KKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLND-------GASVLTLSYLGGVK-  149 (274)
T ss_pred             HHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhcc-------CCcEEEEecCCCcc-
Confidence            999999999999999753      3457889999999999999999999999999964       47999999987654 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                    +.+.+..|++||+|+.+|+++++.|+.++|  |+||+|+||+|+|++...
T Consensus       150 --------------~~~~~~~Y~asKaal~~l~~~la~el~~~g--IrVn~v~PG~v~T~~~~~  197 (274)
T PRK08415        150 --------------YVPHYNVMGVAKAALESSVRYLAVDLGKKG--IRVNAISAGPIKTLAASG  197 (274)
T ss_pred             --------------CCCcchhhhhHHHHHHHHHHHHHHHhhhcC--eEEEEEecCccccHHHhc
Confidence                          445667899999999999999999999988  999999999999987543

>PRK07062 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-36  Score=256.93  Aligned_cols=194  Identities=25%  Similarity=0.260  Sum_probs=175.3

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++....++.++.++++|++|+++++++++++.
T Consensus         3 ~~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   82 (265)
T PRK07062          3 QIQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE   82 (265)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999998888888888776555688999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|++|||||...  ++.+.+.++|.+.+++|+.+++.+++.++|++++     .+.|+||++||..+..      
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~------  151 (265)
T PRK07062         83 ARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRA-----SAAASIVCVNSLLALQ------  151 (265)
T ss_pred             HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----cCCcEEEEeccccccC------
Confidence            99999999999999753  4556788999999999999999999999999986     4568999999988765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                               +.+....|+++|+++.+++++++.|+.++|  |+||+|+||+++|+++.
T Consensus       152 ---------~~~~~~~y~asKaal~~~~~~la~e~~~~g--i~v~~i~PG~v~t~~~~  198 (265)
T PRK07062        152 ---------PEPHMVATSAARAGLLNLVKSLATELAPKG--VRVNSILLGLVESGQWR  198 (265)
T ss_pred             ---------CCCCchHhHHHHHHHHHHHHHHHHHhhhcC--eEEEEEecCccccchhh
Confidence                     444668899999999999999999999888  99999999999999865

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=1.2e-36  Score=257.30  Aligned_cols=193  Identities=17%  Similarity=0.208  Sum_probs=165.0

Q ss_pred             cccCCCCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHH
Q 025275           21 VTQGIDGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        21 ~~~~~~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      |.+.++++||++|||||+  +|||+++|++|+++|++|++++|+.+. .+..+++....  ....+++||++|+++++++
T Consensus         2 ~~~~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~   78 (258)
T PRK07533          2 MQPLLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA-RPYVEPLAEEL--DAPIFLPLDVREPGQLEAV   78 (258)
T ss_pred             CCcccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh-HHHHHHHHHhh--ccceEEecCcCCHHHHHHH
Confidence            456778899999999998  599999999999999999999998643 22334443332  2356899999999999999


Q ss_pred             HHHHhcCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           99 ASEYNSQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ++++.+++|++|++|||||...      +..+.+.++|++++++|+.++++++++++|+|++       +|+||++||..
T Consensus        79 ~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~-------~g~Ii~iss~~  151 (258)
T PRK07533         79 FARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTN-------GGSLLTMSYYG  151 (258)
T ss_pred             HHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhcc-------CCEEEEEeccc
Confidence            9999999999999999999753      3456788999999999999999999999999953       47999999987


Q ss_pred             cccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          173 HRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      +..               +.+.+..|+++|+|+.+|+++++.|+.++|  |+||+|+||+++|++.+.
T Consensus       152 ~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~g--I~Vn~v~PG~v~T~~~~~  202 (258)
T PRK07533        152 AEK---------------VVENYNLMGPVKAALESSVRYLAAELGPKG--IRVHAISPGPLKTRAASG  202 (258)
T ss_pred             ccc---------------CCccchhhHHHHHHHHHHHHHHHHHhhhcC--cEEEEEecCCcCChhhhc
Confidence            654               445677899999999999999999999988  999999999999998754

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=1.2e-36  Score=259.04  Aligned_cols=188  Identities=15%  Similarity=0.192  Sum_probs=161.2

Q ss_pred             CCCCcEEEEecCCC--chHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           26 DGTGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        26 ~~~~k~vlItG~s~--giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++|++|||||++  |||+++|++|+++|++|++++|+.... +..+++.... + ...++++|++|.++++.+++++.
T Consensus         4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~-~~~~~~~~~~-g-~~~~~~~Dv~d~~~v~~~~~~~~   80 (271)
T PRK06505          4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALG-KRVKPLAESL-G-SDFVLPCDVEDIASVDAVFEALE   80 (271)
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHH-HHHHHHHHhc-C-CceEEeCCCCCHHHHHHHHHHHH
Confidence            36899999999997  999999999999999999999875433 3334443332 2 23578999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          104 SQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      +++|++|+||||||+..      ++.+.+.++|.+++++|+.++++++|+++|+|.+       +|+||++||..+..  
T Consensus        81 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~-------~G~Iv~isS~~~~~--  151 (271)
T PRK06505         81 KKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPD-------GGSMLTLTYGGSTR--  151 (271)
T ss_pred             HHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhcc-------CceEEEEcCCCccc--
Confidence            99999999999999763      3456889999999999999999999999999963       48999999988654  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                   +.+.+..|+++|+|+.+|+|+++.|++++|  ||||+|+||+++|++.+.
T Consensus       152 -------------~~~~~~~Y~asKaAl~~l~r~la~el~~~g--IrVn~v~PG~i~T~~~~~  199 (271)
T PRK06505        152 -------------VMPNYNVMGVAKAALEASVRYLAADYGPQG--IRVNAISAGPVRTLAGAG  199 (271)
T ss_pred             -------------cCCccchhhhhHHHHHHHHHHHHHHHhhcC--eEEEEEecCCcccccccc
Confidence                         445678899999999999999999999998  999999999999998643

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=8e-37  Score=257.43  Aligned_cols=187  Identities=18%  Similarity=0.162  Sum_probs=162.6

Q ss_pred             CCCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        25 ~~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++|+++||||+  +|||+++|++|+++|++|++++|+. +..+..+++.    ..++.++++|++|+++++++++++
T Consensus         3 ~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~   77 (252)
T PRK06079          3 GILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLV----DEEDLLVECDVASDESIERAFATI   77 (252)
T ss_pred             cccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhc----cCceeEEeCCCCCHHHHHHHHHHH
Confidence            44789999999999  8999999999999999999999983 4444444432    236789999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275          103 NSQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      .+++|++|++|||||...      +..+.+.++|++.+++|+.+++.++++++|+|.+       +|+||++||..+.. 
T Consensus        78 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~-------~g~Iv~iss~~~~~-  149 (252)
T PRK06079         78 KERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNP-------GASIVTLTYFGSER-  149 (252)
T ss_pred             HHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhccc-------CceEEEEeccCccc-
Confidence            999999999999999753      3456788999999999999999999999999853       48999999988654 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                    +.+.+..|+++|+|+.+|+++++.|++++|  |+||+|+||+|+|++...
T Consensus       150 --------------~~~~~~~Y~asKaal~~l~~~la~el~~~g--I~vn~i~PG~v~T~~~~~  197 (252)
T PRK06079        150 --------------AIPNYNVMGIAKAALESSVRYLARDLGKKG--IRVNAISAGAVKTLAVTG  197 (252)
T ss_pred             --------------cCCcchhhHHHHHHHHHHHHHHHHHhhhcC--cEEEEEecCccccccccc
Confidence                          445678899999999999999999999988  999999999999998654

>PRK07063 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-36  Score=255.53  Aligned_cols=194  Identities=28%  Similarity=0.343  Sum_probs=173.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++.....+.++.++++|++|++++..+++++.+
T Consensus         3 ~~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   82 (260)
T PRK07063          3 NRLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE   82 (260)
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999988888888887633356789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++|||||...  ++.+.+.++|.+++++|+.++++++++++|+|.+     ++.|+||++||..+..       
T Consensus        83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~-------  150 (260)
T PRK07063         83 AFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVE-----RGRGSIVNIASTHAFK-------  150 (260)
T ss_pred             HhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-----hCCeEEEEECChhhcc-------
Confidence            9999999999999753  3456788999999999999999999999999986     4568999999988665       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|+|+.+++++++.++.++|  |+||+|+||+++|++.+.
T Consensus       151 --------~~~~~~~Y~~sKaa~~~~~~~la~el~~~g--Irvn~v~PG~v~t~~~~~  198 (260)
T PRK07063        151 --------IIPGCFPYPVAKHGLLGLTRALGIEYAARN--VRVNAIAPGYIETQLTED  198 (260)
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHhCccC--eEEEEEeeCCccChhhhh
Confidence                    444667899999999999999999999888  999999999999998654

>PRK07478 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-36  Score=254.05  Aligned_cols=194  Identities=28%  Similarity=0.307  Sum_probs=173.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++...  +.++.++.+|++++++++++++++.+
T Consensus         2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (254)
T PRK07478          2 MRLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE--GGEAVALAGDVRDEAYAKALVALAVE   79 (254)
T ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999998888888877665  45789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +++++|++|||||...   +..+.+.+++++.+++|+.+++.++++++|.+.+     .+.++||++||..+...     
T Consensus        80 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~-----~~~~~iv~~sS~~~~~~-----  149 (254)
T PRK07478         80 RFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLA-----RGGGSLIFTSTFVGHTA-----  149 (254)
T ss_pred             hcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCceEEEEechHhhcc-----
Confidence            9999999999999753   3456788999999999999999999999999987     45689999999876521     


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++...|++||+++.+++++++.++.++|  |+||+|+||+++|++.+.+
T Consensus       150 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~  198 (254)
T PRK07478        150 ---------GFPGMAAYAASKAGLIGLTQVLAAEYGAQG--IRVNALLPGGTDTPMGRAM  198 (254)
T ss_pred             ---------CCCCcchhHHHHHHHHHHHHHHHHHHhhcC--EEEEEEeeCcccCcccccc
Confidence                     344678999999999999999999999888  9999999999999987654

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=100.00  E-value=1.4e-36  Score=256.86  Aligned_cols=190  Identities=18%  Similarity=0.137  Sum_probs=164.8

Q ss_pred             CCCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccc--hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMA--AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        25 ~~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      +++++|+++||||+  +|||+++|++|+++|++|++++|+.+  ..++..+++.+.  ..++.++++|++|+++++++++
T Consensus         2 ~~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~   79 (258)
T PRK07370          2 LDLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP--LNPSLFLPCDVQDDAQIEETFE   79 (258)
T ss_pred             cccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc--cCcceEeecCcCCHHHHHHHHH
Confidence            45789999999986  89999999999999999999887654  344555666543  2357789999999999999999


Q ss_pred             HHhcCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          101 EYNSQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      ++.+++|++|++|||||+..      +..+.+.++|++++++|+.++++++|+++|.|++       .|+||++||..+.
T Consensus        80 ~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~-------~g~Iv~isS~~~~  152 (258)
T PRK07370         80 TIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE-------GGSIVTLTYLGGV  152 (258)
T ss_pred             HHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh-------CCeEEEEeccccc
Confidence            99999999999999999752      4556788999999999999999999999999964       4899999998865


Q ss_pred             cccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          175 FAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      .               +.+.+..|+++|+|+.+|+++++.|+.++|  |+||+|+||+++|++.+.
T Consensus       153 ~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~g--I~Vn~i~PG~v~T~~~~~  201 (258)
T PRK07370        153 R---------------AIPNYNVMGVAKAALEASVRYLAAELGPKN--IRVNAISAGPIRTLASSA  201 (258)
T ss_pred             c---------------CCcccchhhHHHHHHHHHHHHHHHHhCcCC--eEEEEEecCcccCchhhc
Confidence            4               455678999999999999999999999988  999999999999998653

>PRK08303 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-36  Score=261.47  Aligned_cols=194  Identities=22%  Similarity=0.252  Sum_probs=165.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc----------chHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM----------AAGKDVREAIVKEIPSAKVDAMELDVSSLAS   94 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~----------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s   94 (255)
                      .++++|++|||||++|||+++|++|++.|++|++++|+.          +.+++..+++...  +.++.++++|++|+++
T Consensus         4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~   81 (305)
T PRK08303          4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAA--GGRGIAVQVDHLVPEQ   81 (305)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence            457899999999999999999999999999999999984          3455566666543  4568899999999999


Q ss_pred             HHHHHHHHhcCCCCeeEEEEcc-CCC------CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEE
Q 025275           95 VRKFASEYNSQGRPLNILINNA-GIM------ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVN  167 (255)
Q Consensus        95 i~~~~~~~~~~~g~id~lv~~a-g~~------~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~  167 (255)
                      ++.+++++.+++|++|++|||| |..      .+..+.+.++|.+++++|+.+++.++++++|+|.+     +.+|+||+
T Consensus        82 v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~-----~~~g~IV~  156 (305)
T PRK08303         82 VRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIR-----RPGGLVVE  156 (305)
T ss_pred             HHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhh-----CCCcEEEE
Confidence            9999999999999999999999 742      34456778899999999999999999999999976     34689999


Q ss_pred             ecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          168 VSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       168 vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      +||..+....            .+.+....|+++|+|+.+|+++++.|+.+.|  ||||+|+||+++|++..
T Consensus       157 isS~~~~~~~------------~~~~~~~~Y~asKaal~~lt~~La~el~~~g--IrVn~v~PG~v~T~~~~  214 (305)
T PRK08303        157 ITDGTAEYNA------------THYRLSVFYDLAKTSVNRLAFSLAHELAPHG--ATAVALTPGWLRSEMML  214 (305)
T ss_pred             ECCccccccC------------cCCCCcchhHHHHHHHHHHHHHHHHHhhhcC--cEEEEecCCccccHHHH
Confidence            9997653210            0223456899999999999999999999988  99999999999999864

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=100.00  E-value=2.6e-36  Score=254.13  Aligned_cols=192  Identities=22%  Similarity=0.275  Sum_probs=166.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++++|++|||||++|||+++|++|+++|++|++++|+.  .++..+++...  +.++.++++|++|+++++++++++.+
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (251)
T PRK12481          4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE--APETQAQVEAL--GRKFHFITADLIQQKDIDSIVSQAVE   79 (251)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch--HHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            568899999999999999999999999999999998864  23444444443  55789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .+|++|++|||||...  +..+.+.++|++++++|+.++++++++++++|.++    +.+|+||++||..+..       
T Consensus        80 ~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~----~~~g~ii~isS~~~~~-------  148 (251)
T PRK12481         80 VMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQ----GNGGKIINIASMLSFQ-------  148 (251)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHc----CCCCEEEEeCChhhcC-------
Confidence            9999999999999764  34567889999999999999999999999999762    2358999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +.+....|+++|+++++|+++++.|+.++|  |+||+|+||+++|++....
T Consensus       149 --------~~~~~~~Y~asK~a~~~l~~~la~e~~~~g--irvn~v~PG~v~t~~~~~~  197 (251)
T PRK12481        149 --------GGIRVPSYTASKSAVMGLTRALATELSQYN--INVNAIAPGYMATDNTAAL  197 (251)
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHHhhcC--eEEEEEecCCCccCchhhc
Confidence                    334567899999999999999999999988  9999999999999987654

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=2.1e-36  Score=255.61  Aligned_cols=192  Identities=17%  Similarity=0.152  Sum_probs=163.7

Q ss_pred             CCCCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        24 ~~~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ++++++|++|||||+  +|||+++|++|+++|++|++++|+... .+..+++.+...+.++.++++|++|++++++++++
T Consensus         2 ~~~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~   80 (257)
T PRK08594          2 MLSLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERL-EKEVRELADTLEGQESLLLPCDVTSDEEITACFET   80 (257)
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccc-hHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHH
Confidence            356789999999997  899999999999999999999876432 22333343332245788999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          102 YNSQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      +.+++|++|++|||||+..      +..+.+.++|.+.+++|+.+++.++++++|+|.+       +|+||++||..+..
T Consensus        81 ~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-------~g~Iv~isS~~~~~  153 (257)
T PRK08594         81 IKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTE-------GGSIVTLTYLGGER  153 (257)
T ss_pred             HHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhccc-------CceEEEEcccCCcc
Confidence            9999999999999999752      3456788999999999999999999999999953       58999999988765


Q ss_pred             ccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          176 AYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                     +.+.+..|+++|+|+.+|+++++.|++++|  |+||+|+||+++|++.+.
T Consensus       154 ---------------~~~~~~~Y~asKaal~~l~~~la~el~~~g--Irvn~v~PG~v~T~~~~~  201 (257)
T PRK08594        154 ---------------VVQNYNVMGVAKASLEASVKYLANDLGKDG--IRVNAISAGPIRTLSAKG  201 (257)
T ss_pred             ---------------CCCCCchhHHHHHHHHHHHHHHHHHhhhcC--CEEeeeecCcccCHhHhh
Confidence                           445667899999999999999999999988  999999999999997543

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=100.00  E-value=4.9e-36  Score=253.79  Aligned_cols=193  Identities=35%  Similarity=0.375  Sum_probs=170.8

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      .+..+.+|+++||||++|||+++|++|++.|++|++++|+.+.+++...++..... +.++..+.||+++++.++.++++
T Consensus         2 ~~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~   81 (270)
T KOG0725|consen    2 SGGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEF   81 (270)
T ss_pred             CCccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999998888876532 45799999999999999999999


Q ss_pred             HhcC-CCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275          102 YNSQ-GRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLG-HFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       102 ~~~~-~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      ..++ +|++|++|||||...   +.++.+.++|++.+++|+.| .+.+.+.+.+++++     .++|.|+++||..+.. 
T Consensus        82 ~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~-----~~gg~I~~~ss~~~~~-  155 (270)
T KOG0725|consen   82 AVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKK-----SKGGSIVNISSVAGVG-  155 (270)
T ss_pred             HHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHh-----cCCceEEEEecccccc-
Confidence            9998 799999999999774   46789999999999999996 55566667777776     6789999999998775 


Q ss_pred             cccCccCCCCCcccCCCCc-cchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          177 YSEGIRFDKINDESAYNSF-GAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~-~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                                    +..+. ..|+++|+|+.+|+|++|.|+.++|  ||||+|+||.+.|++
T Consensus       156 --------------~~~~~~~~Y~~sK~al~~ltr~lA~El~~~g--IRvN~v~PG~i~T~~  201 (270)
T KOG0725|consen  156 --------------PGPGSGVAYGVSKAALLQLTRSLAKELAKHG--IRVNSVSPGLVKTSL  201 (270)
T ss_pred             --------------CCCCCcccchhHHHHHHHHHHHHHHHHhhcC--cEEEEeecCcEeCCc
Confidence                          22233 6899999999999999999999999  999999999999998

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=1.6e-37  Score=247.27  Aligned_cols=201  Identities=28%  Similarity=0.342  Sum_probs=178.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++||.+++|||.||||++++++|+++|..+.++..+.|+ .+...++++..|..++.|++||+++..+++++++++.+
T Consensus         1 m~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En-~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~   79 (261)
T KOG4169|consen    1 MDLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEEN-PEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILA   79 (261)
T ss_pred             CcccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhC-HHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHH
Confidence            57889999999999999999999999999988888877777 55567888888899999999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      .+|.+|++||+||+      .++.+|++.+.+|+.|.++-+..++|+|.+..  .+.+|-|||+||.+|..         
T Consensus        80 ~fg~iDIlINgAGi------~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~--gG~GGiIvNmsSv~GL~---------  142 (261)
T KOG4169|consen   80 TFGTIDILINGAGI------LDDKDWERTINVNLTGVINGTQLALPYMDKKQ--GGKGGIIVNMSSVAGLD---------  142 (261)
T ss_pred             HhCceEEEEccccc------ccchhHHHhhccchhhhhhhhhhhhhhhhhhc--CCCCcEEEEeccccccC---------
Confidence            99999999999998      44678999999999999999999999999843  25788999999999887         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHH--HhhCCCcEEEEEeeCCceecCcccccCcccccceecc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKH--LKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFSIS  252 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~--~~~~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~  252 (255)
                            |.+..+.|++||+++.+|+||+|..  +.+.|  |++|+||||+++|.+.+.+... .-|++++
T Consensus       143 ------P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sG--V~~~avCPG~t~t~l~~~~~~~-~~~~e~~  203 (261)
T KOG4169|consen  143 ------PMPVFPVYAASKAGVVGFTRSLADLAYYQRSG--VRFNAVCPGFTRTDLAENIDAS-GGYLEYS  203 (261)
T ss_pred             ------ccccchhhhhcccceeeeehhhhhhhhHhhcC--EEEEEECCCcchHHHHHHHHhc-CCccccc
Confidence                  7888999999999999999999986  45567  9999999999999999887543 4466654

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=5.3e-36  Score=253.57  Aligned_cols=188  Identities=18%  Similarity=0.188  Sum_probs=162.1

Q ss_pred             CCCCcEEEEecCCC--chHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           26 DGTGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        26 ~~~~k~vlItG~s~--giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++|++|||||++  |||+++|++|+++|++|++++|+ +..++..+++.+.. + ...++++|++|+++++++++++.
T Consensus         5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~-~~~~~~~~~l~~~~-g-~~~~~~~Dv~~~~~v~~~~~~~~   81 (260)
T PRK06603          5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS-EVLEKRVKPLAEEI-G-CNFVSELDVTNPKSISNLFDDIK   81 (260)
T ss_pred             ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc-hHHHHHHHHHHHhc-C-CceEEEccCCCHHHHHHHHHHHH
Confidence            46789999999998  99999999999999999999987 34455556665442 2 23467999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          104 SQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      +++|++|++|||||...      ++.+.+.++|.+.+++|+.+++.+++++.|+|.+       +|+||++||..+..  
T Consensus        82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~-------~G~Iv~isS~~~~~--  152 (260)
T PRK06603         82 EKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHD-------GGSIVTLTYYGAEK--  152 (260)
T ss_pred             HHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------CceEEEEecCcccc--
Confidence            99999999999999753      3457789999999999999999999999999953       48999999987654  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                   +.+.+..|++||+|+.+|+++++.|+.++|  |+||+|+||+++|++.+.
T Consensus       153 -------------~~~~~~~Y~asKaal~~l~~~la~el~~~g--IrVn~v~PG~v~T~~~~~  200 (260)
T PRK06603        153 -------------VIPNYNVMGVAKAALEASVKYLANDMGENN--IRVNAISAGPIKTLASSA  200 (260)
T ss_pred             -------------CCCcccchhhHHHHHHHHHHHHHHHhhhcC--eEEEEEecCcCcchhhhc
Confidence                         445678899999999999999999999988  999999999999998643

>PRK08589 short chain dehydrogenase; Validated

Probab=100.00  E-value=9.4e-36  Score=253.57  Aligned_cols=189  Identities=32%  Similarity=0.387  Sum_probs=169.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+++|++|||||++|||++++++|+++|++|++++|+ +.+++..+++.+.  +.++.++.+|++++++++.+++++.+.
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN--GGKAKAYHVDISDEQQVKDFASEIKEQ   79 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999 7777777777654  557899999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          106 GRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       106 ~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      +|++|+||||||...   +..+.+.+.|++++++|+.+++.++++++|++.+     + +|+||++||..+..       
T Consensus        80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~-~g~iv~isS~~~~~-------  146 (272)
T PRK08589         80 FGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMME-----Q-GGSIINTSSFSGQA-------  146 (272)
T ss_pred             cCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----c-CCEEEEeCchhhcC-------
Confidence            999999999999763   3456788899999999999999999999999986     2 48999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.+....|+++|+|+++|+++++.++.++|  |+||+|+||+|+|++.+.
T Consensus       147 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~g--I~v~~v~PG~v~T~~~~~  194 (272)
T PRK08589        147 --------ADLYRSGYNAAKGAVINFTKSIAIEYGRDG--IRANAIAPGTIETPLVDK  194 (272)
T ss_pred             --------CCCCCchHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEecCcccCchhhh
Confidence                    344567899999999999999999999988  999999999999998764

>PRK08862 short chain dehydrogenase; Provisional

Probab=100.00  E-value=9.3e-36  Score=247.26  Aligned_cols=187  Identities=20%  Similarity=0.172  Sum_probs=166.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.+.  +.++..+.+|++|+++++++++++.+
T Consensus         1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (227)
T PRK08862          1 MDIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL--TDNVYSFQLKDFSQESIRHLFDAIEQ   78 (227)
T ss_pred             CCCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCCeEEEEccCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999988888888665  45688999999999999999999999


Q ss_pred             CCC-CeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          105 QGR-PLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       105 ~~g-~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      ++| ++|++|||||...   ++.+.+.++|.+.+++|+.+++.+++.++|+|.++    +++|+||++||..+       
T Consensus        79 ~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~----~~~g~Iv~isS~~~-------  147 (227)
T PRK08862         79 QFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKR----NKKGVIVNVISHDD-------  147 (227)
T ss_pred             HhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCceEEEEecCCC-------
Confidence            998 9999999998542   35567888999999999999999999999999862    23689999999653       


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                                 .+++..|+++|+|+.+|+++++.|+.+.|  |+||+|+||+++|+.
T Consensus       148 -----------~~~~~~Y~asKaal~~~~~~la~el~~~~--Irvn~v~PG~i~t~~  191 (227)
T PRK08862        148 -----------HQDLTGVESSNALVSGFTHSWAKELTPFN--IRVGGVVPSIFSANG  191 (227)
T ss_pred             -----------CCCcchhHHHHHHHHHHHHHHHHHHhhcC--cEEEEEecCcCcCCC
Confidence                       23567899999999999999999999988  999999999999983

>PRK05867 short chain dehydrogenase; Provisional

Probab=100.00  E-value=6.3e-36  Score=251.82  Aligned_cols=196  Identities=28%  Similarity=0.338  Sum_probs=170.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++...  +.++.++.+|++|+++++++++++.
T Consensus         4 ~~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   81 (253)
T PRK05867          4 LFDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS--GGKVVPVCCDVSQHQQVTSMLDQVT   81 (253)
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999988888888777654  4578899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|++|||||...  +..+.+.++|++++++|+.+++.+++++.++|.++    +.+|+||++||..+....    
T Consensus        82 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~~g~iv~~sS~~~~~~~----  153 (253)
T PRK05867         82 AELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQ----GQGGVIINTASMSGHIIN----  153 (253)
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhc----CCCcEEEEECcHHhcCCC----
Confidence            99999999999999763  34567889999999999999999999999999762    235799999998764310    


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               .......|+++|+|+++++++++.++.++|  |+||+|+||+++|++.+.
T Consensus       154 ---------~~~~~~~Y~asKaal~~~~~~la~e~~~~g--I~vn~i~PG~v~t~~~~~  201 (253)
T PRK05867        154 ---------VPQQVSHYCASKAAVIHLTKAMAVELAPHK--IRVNSVSPGYILTELVEP  201 (253)
T ss_pred             ---------CCCCccchHHHHHHHHHHHHHHHHHHhHhC--eEEEEeecCCCCCccccc
Confidence                     011346899999999999999999999988  999999999999998754

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=1e-35  Score=251.99  Aligned_cols=190  Identities=16%  Similarity=0.135  Sum_probs=161.9

Q ss_pred             CCCCcEEEEecC--CCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           26 DGTGLTAIVTGA--SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        26 ~~~~k~vlItG~--s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++|++|||||  ++|||+++|++|+++|++|++++|+. +..+..+++....  .....++||++|+++++.+++++.
T Consensus         3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   79 (261)
T PRK08690          3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAEL--DSELVFRCDVASDDEINQVFADLG   79 (261)
T ss_pred             ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhcc--CCceEEECCCCCHHHHHHHHHHHH
Confidence            378999999997  67999999999999999999998863 4445555554432  235689999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCCC-------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275          104 SQGRPLNILINNAGIMAS-------PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~-------~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      +++|++|++|||||+...       ..+.+.++|.+++++|+.++++++|+++|.|++      ++|+||++||..+.. 
T Consensus        80 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~------~~g~Iv~iss~~~~~-  152 (261)
T PRK08690         80 KHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRG------RNSAIVALSYLGAVR-  152 (261)
T ss_pred             HHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhh------cCcEEEEEccccccc-
Confidence            999999999999998642       134677889999999999999999999999864      247999999988764 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                    +.+++..|+++|+|+.+|+++++.|+.++|  |+||+|+||+++|++....
T Consensus       153 --------------~~~~~~~Y~asKaal~~l~~~la~e~~~~g--IrVn~i~PG~v~T~~~~~~  201 (261)
T PRK08690        153 --------------AIPNYNVMGMAKASLEAGIRFTAACLGKEG--IRCNGISAGPIKTLAASGI  201 (261)
T ss_pred             --------------CCCCcccchhHHHHHHHHHHHHHHHhhhcC--eEEEEEecCcccchhhhcC
Confidence                          445678999999999999999999999998  9999999999999986543

>PRK05854 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-35  Score=255.69  Aligned_cols=207  Identities=44%  Similarity=0.603  Sum_probs=177.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++.+..++.++.++++|++|.++++++++++.+
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~   89 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA   89 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999998888888887766566799999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          105 QGRPLNILINNAGIMAS-PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      .++++|+||||||...+ ..+.+.++++.++.+|+.|++.+++.++|.|.+      ..++||++||.++..+.   .++
T Consensus        90 ~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~------~~~riv~vsS~~~~~~~---~~~  160 (313)
T PRK05854         90 EGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRA------GRARVTSQSSIAARRGA---INW  160 (313)
T ss_pred             hCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHh------CCCCeEEEechhhcCCC---cCc
Confidence            99999999999998754 335678899999999999999999999999976      25799999999876532   223


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      .++....++.+...|+.||+|+.+|++.++.++...+.+|+||+|+||+++|++...
T Consensus       161 ~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~  217 (313)
T PRK05854        161 DDLNWERSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAA  217 (313)
T ss_pred             ccccccccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCcccc
Confidence            334444456677899999999999999999876433334999999999999998754

>PRK06139 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-35  Score=257.25  Aligned_cols=192  Identities=28%  Similarity=0.293  Sum_probs=173.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +.+++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++.+.  +.++.++.+|++|+++++++++++.+
T Consensus         3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~~~~~~~   80 (330)
T PRK06139          3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL--GAEVLVVPTDVTDADQVKALATQAAS   80 (330)
T ss_pred             cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999988888888765  56788999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .+|++|++|||||...  ++.+.+.+++.+++++|+.++++++++++|+|.+     ++.|+||++||..+..       
T Consensus        81 ~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~-----~~~g~iV~isS~~~~~-------  148 (330)
T PRK06139         81 FGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKK-----QGHGIFINMISLGGFA-------  148 (330)
T ss_pred             hcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----cCCCEEEEEcChhhcC-------
Confidence            8999999999999763  4567888999999999999999999999999987     4568999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhC-CCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKED-GVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~-~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.+.+..|+++|+++.+|+++++.|+... +  |+|++|+||.++|++++.
T Consensus       149 --------~~p~~~~Y~asKaal~~~~~sL~~El~~~~g--I~V~~v~Pg~v~T~~~~~  197 (330)
T PRK06139        149 --------AQPYAAAYSASKFGLRGFSEALRGELADHPD--IHVCDVYPAFMDTPGFRH  197 (330)
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHHhCCCCC--eEEEEEecCCccCccccc
Confidence                    44567899999999999999999999764 6  999999999999998754

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=1.8e-35  Score=250.65  Aligned_cols=186  Identities=15%  Similarity=0.203  Sum_probs=160.5

Q ss_pred             CCCcEEEEecCCC--chHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~--giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++||++|||||++  |||+++|++|+++|++|++++|+ +++++..+++....  ....++.+|++|+++++++++++.+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~   80 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQL--GSDIVLPCDVAEDASIDAMFAELGK   80 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHHHhcc--CCceEeecCCCCHHHHHHHHHHHHh
Confidence            6789999999986  99999999999999999999987 45556666665542  3467899999999999999999999


Q ss_pred             CCCCeeEEEEccCCCCC-------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          105 QGRPLNILINNAGIMAS-------PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~-------~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      ++|++|++|||||+...       +.+.+.++|.+.+++|+.+++.+++++.|.+.+       +|+||++||..+..  
T Consensus        81 ~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-------~g~Iv~iss~~~~~--  151 (262)
T PRK07984         81 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP-------GSALLTLSYLGAER--  151 (262)
T ss_pred             hcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcC-------CcEEEEEecCCCCC--
Confidence            99999999999997532       335678899999999999999999999886642       47999999987654  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                   +.+.+..|++||+|+.+|+++++.|+.++|  ||||+|+||+++|++..
T Consensus       152 -------------~~~~~~~Y~asKaal~~l~~~la~el~~~g--IrVn~i~PG~v~T~~~~  198 (262)
T PRK07984        152 -------------AIPNYNVMGLAKASLEANVRYMANAMGPEG--VRVNAISAGPIRTLAAS  198 (262)
T ss_pred             -------------CCCCcchhHHHHHHHHHHHHHHHHHhcccC--cEEeeeecCcccchHHh
Confidence                         445678999999999999999999999988  99999999999998753

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=100.00  E-value=1.7e-35  Score=254.58  Aligned_cols=193  Identities=17%  Similarity=0.192  Sum_probs=163.2

Q ss_pred             cCCCCCCcEEEEecC--CCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhh-------CC-C---CceEEEEeCC
Q 025275           23 QGIDGTGLTAIVTGA--SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE-------IP-S---AKVDAMELDV   89 (255)
Q Consensus        23 ~~~~~~~k~vlItG~--s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------~~-~---~~~~~~~~Dl   89 (255)
                      +.++++||++|||||  ++|||+++|++|++.|++|++ +|+.+.++.+...+.+.       .+ +   .....+.+|+
T Consensus         3 ~~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~   81 (303)
T PLN02730          3 LPIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDA   81 (303)
T ss_pred             CCcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecce
Confidence            346699999999999  899999999999999999998 78888887777666531       01 1   1246788898


Q ss_pred             --CC------------------HHHHHHHHHHHhcCCCCeeEEEEccCCC----CCCCCCChHHHHHHHHHHHHHHHHHH
Q 025275           90 --SS------------------LASVRKFASEYNSQGRPLNILINNAGIM----ASPFMLSKDNIELQFATNHLGHFLLT  145 (255)
Q Consensus        90 --~~------------------~~si~~~~~~~~~~~g~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~~~~~~~  145 (255)
                        ++                  +++++.+++++.+++|++|+||||||..    .++.+.+.++|++++++|+.++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~  161 (303)
T PLN02730         82 VFDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLL  161 (303)
T ss_pred             ecCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHH
Confidence              33                  3489999999999999999999999743    35667899999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCc-cchHHhHHHHHHHHHHHHHHHhh-CCCcE
Q 025275          146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF-GAYGQSKLANILHAKELAKHLKE-DGVNI  223 (255)
Q Consensus       146 ~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sKaa~~~l~~~la~~~~~-~~~~i  223 (255)
                      |+++|.|.+       .|+||++||..+..               +.+.+ ..|+++|+|+.+|+++++.|+.+ +|  |
T Consensus       162 ~~~~p~m~~-------~G~II~isS~a~~~---------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~g--I  217 (303)
T PLN02730        162 QHFGPIMNP-------GGASISLTYIASER---------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYK--I  217 (303)
T ss_pred             HHHHHHHhc-------CCEEEEEechhhcC---------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCC--e
Confidence            999999975       38999999988765               33333 47999999999999999999986 67  9


Q ss_pred             EEEEeeCCceecCcccc
Q 025275          224 TANSLHPGSIVTNLFRY  240 (255)
Q Consensus       224 ~vn~v~PG~v~t~~~~~  240 (255)
                      |||+|+||+++|++.+.
T Consensus       218 rVn~V~PG~v~T~~~~~  234 (303)
T PLN02730        218 RVNTISAGPLGSRAAKA  234 (303)
T ss_pred             EEEEEeeCCccCchhhc
Confidence            99999999999998765

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=100.00  E-value=3.6e-35  Score=248.34  Aligned_cols=195  Identities=19%  Similarity=0.264  Sum_probs=167.9

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-ccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +.++++|++|||||++|||+++|++|+++|++|++++| +.+.++...+++.... +.++.++++|++|+++++++++++
T Consensus         3 ~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~   81 (260)
T PRK08416          3 SNEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY-GIKAKAYPLNILEPETYKELFKKI   81 (260)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHH
Confidence            45678999999999999999999999999999998875 4555666666665432 457899999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          103 NSQGRPLNILINNAGIMA--------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      .+.++++|++|||||...        ++.+.+.+++.+.+++|+.+++.+++.++|.|.+     .+.|+||++||..+.
T Consensus        82 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~  156 (260)
T PRK08416         82 DEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEK-----VGGGSIISLSSTGNL  156 (260)
T ss_pred             HHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhc-----cCCEEEEEEeccccc
Confidence            999999999999998642        3345678999999999999999999999999986     446899999998765


Q ss_pred             cccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          175 FAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      .               +.+.+..|+++|+|+++++++++.|+.++|  |+||+|+||+++|++.+..
T Consensus       157 ~---------------~~~~~~~Y~asK~a~~~~~~~la~el~~~g--i~v~~v~PG~i~T~~~~~~  206 (260)
T PRK08416        157 V---------------YIENYAGHGTSKAAVETMVKYAATELGEKN--IRVNAVSGGPIDTDALKAF  206 (260)
T ss_pred             c---------------CCCCcccchhhHHHHHHHHHHHHHHhhhhC--eEEEEEeeCcccChhhhhc
Confidence            4               445677999999999999999999999888  9999999999999986543

>PRK05876 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.8e-35  Score=249.19  Aligned_cols=193  Identities=24%  Similarity=0.312  Sum_probs=172.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++...  +.++.++++|++|++++.++++++.+
T Consensus         2 ~~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~   79 (275)
T PRK05876          2 DGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREEVTHLADEAFR   79 (275)
T ss_pred             CCcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3478999999999999999999999999999999999988888888777654  55788999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .+|++|+||||||...  +..+.+.++|++++++|+.++++++++++|.|.++    +.+|+||++||..+..       
T Consensus        80 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~----~~~g~iv~isS~~~~~-------  148 (275)
T PRK05876         80 LLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQ----GTGGHVVFTASFAGLV-------  148 (275)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc----CCCCEEEEeCChhhcc-------
Confidence            9999999999999753  45678899999999999999999999999999762    2368999999998765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|+++.+|+++++.++..+|  |++++|+||+++|++...
T Consensus       149 --------~~~~~~~Y~asK~a~~~~~~~l~~e~~~~g--i~v~~v~Pg~v~t~~~~~  196 (275)
T PRK05876        149 --------PNAGLGAYGVAKYGVVGLAETLAREVTADG--IGVSVLCPMVVETNLVAN  196 (275)
T ss_pred             --------CCCCCchHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEEeCccccccccc
Confidence                    455778999999999999999999998888  999999999999998654

>PRK07791 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5e-35  Score=250.95  Aligned_cols=194  Identities=24%  Similarity=0.277  Sum_probs=168.7

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc---------chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM---------AAGKDVREAIVKEIPSAKVDAMELDVSSLASVR   96 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~   96 (255)
                      .+++|++|||||++|||+++|++|++.|++|++++++.         +.+++..+++...  +.++.++.+|++|++++.
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~v~   80 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA--GGEAVANGDDIADWDGAA   80 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc--CCceEEEeCCCCCHHHHH
Confidence            36789999999999999999999999999999998876         6677777777654  557889999999999999


Q ss_pred             HHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCeEEEecCCcc
Q 025275           97 KFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQ-KSSREGRIVNVSSEAH  173 (255)
Q Consensus        97 ~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~g~ii~vsS~~~  173 (255)
                      .+++++.+.+|++|++|||||+..  +..+.+.++|++++++|+.++++++|+++|+|.+... .....|+||++||..+
T Consensus        81 ~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~  160 (286)
T PRK07791         81 NLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAG  160 (286)
T ss_pred             HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhh
Confidence            999999999999999999999764  3567889999999999999999999999999975321 1112479999999887


Q ss_pred             ccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          174 RFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      ..               +.++...|+++|+|+.+|+++++.|+.++|  |+||+|+|| ++|++..
T Consensus       161 ~~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~g--IrVn~v~Pg-~~T~~~~  208 (286)
T PRK07791        161 LQ---------------GSVGQGNYSAAKAGIAALTLVAAAELGRYG--VTVNAIAPA-ARTRMTE  208 (286)
T ss_pred             Cc---------------CCCCchhhHHHHHHHHHHHHHHHHHHHHhC--eEEEEECCC-CCCCcch
Confidence            66               445678999999999999999999999988  999999999 8998754

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=3.4e-35  Score=250.25  Aligned_cols=186  Identities=18%  Similarity=0.190  Sum_probs=160.0

Q ss_pred             CCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++|++|||||+  +|||+++|++|+++|++|++++|+. ...+..+++.+.. + ...++++|++|+++++++++++.+
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~-~~~~~~~~l~~~~-~-~~~~~~~Dl~~~~~v~~~~~~~~~   84 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGD-ALKKRVEPLAAEL-G-AFVAGHCDVTDEASIDAVFETLEK   84 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHHHhc-C-CceEEecCCCCHHHHHHHHHHHHH
Confidence            568999999997  8999999999999999999998863 3344455554433 2 356799999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          105 QGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      ++|++|++|||||+..      +..+.+.++|++.+++|+.+++.++++++|+|.+       +|+||++||..+..   
T Consensus        85 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~-------~g~Iv~iss~~~~~---  154 (272)
T PRK08159         85 KWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTD-------GGSILTLTYYGAEK---  154 (272)
T ss_pred             hcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCC-------CceEEEEecccccc---
Confidence            9999999999999753      3456788999999999999999999999998853       48999999977554   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                  +.+.+..|+++|+|+.+|+++++.|+.++|  |+||+|+||+++|++..
T Consensus       155 ------------~~p~~~~Y~asKaal~~l~~~la~el~~~g--IrVn~v~PG~v~T~~~~  201 (272)
T PRK08159        155 ------------VMPHYNVMGVAKAALEASVKYLAVDLGPKN--IRVNAISAGPIKTLAAS  201 (272)
T ss_pred             ------------CCCcchhhhhHHHHHHHHHHHHHHHhcccC--eEEEEeecCCcCCHHHh
Confidence                        445678899999999999999999999988  99999999999998764

>PRK06114 short chain dehydrogenase; Provisional

Probab=100.00  E-value=7.9e-35  Score=245.36  Aligned_cols=195  Identities=27%  Similarity=0.264  Sum_probs=169.9

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc-hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .+++++|++|||||++|||+++|++|+++|++|++++|+.+ .+++..+++...  +.++.++++|++|++++..+++++
T Consensus         3 ~~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~~   80 (254)
T PRK06114          3 LFDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA--GRRAIQIAADVTSKADLRAAVART   80 (254)
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999764 456666666654  457889999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+.++++|++|||||...  +..+.+.++|++++++|+.+++++++++++.+.+     ++.++||++||..+..+.+  
T Consensus        81 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~~~~--  153 (254)
T PRK06114         81 EAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLE-----NGGGSIVNIASMSGIIVNR--  153 (254)
T ss_pred             HHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHh-----cCCcEEEEECchhhcCCCC--
Confidence            999999999999999763  3456788999999999999999999999999986     4568999999988765221  


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                 ......|+++|+|+.+++++++.++.++|  |+||+|+||+++|++.+.
T Consensus       154 -----------~~~~~~Y~~sKaa~~~l~~~la~e~~~~g--i~v~~v~PG~i~t~~~~~  200 (254)
T PRK06114        154 -----------GLLQAHYNASKAGVIHLSKSLAMEWVGRG--IRVNSISPGYTATPMNTR  200 (254)
T ss_pred             -----------CCCcchHHHHHHHHHHHHHHHHHHHhhcC--eEEEEEeecCccCccccc
Confidence                       11357899999999999999999999988  999999999999998753

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=100.00  E-value=9.7e-35  Score=244.66  Aligned_cols=193  Identities=23%  Similarity=0.308  Sum_probs=172.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++.+|++|||||++|||++++++|+++|++|++++|+.+++++..+++...  +.++.++.+|++|+++++.+++++.
T Consensus         4 ~~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~   81 (254)
T PRK08085          4 LFSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE--GIKAHAAPFNVTHKQEVEAAIEHIE   81 (254)
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEecCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999988888887777654  4578889999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|++|||+|...  +..+.+.++|++.+++|+.+++++++++.+.+.+     ++.++||++||..+..      
T Consensus        82 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~------  150 (254)
T PRK08085         82 KDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVK-----RQAGKIINICSMQSEL------  150 (254)
T ss_pred             HhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCcEEEEEccchhcc------
Confidence            99999999999999753  4556788999999999999999999999999976     4568999999987654      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|+++++++++++.++.++|  |++|+|+||+++|++.+.
T Consensus       151 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~pG~~~t~~~~~  198 (254)
T PRK08085        151 ---------GRDTITPYAASKGAVKMLTRGMCVELARHN--IQVNGIAPGYFKTEMTKA  198 (254)
T ss_pred             ---------CCCCCcchHHHHHHHHHHHHHHHHHHHhhC--eEEEEEEeCCCCCcchhh
Confidence                     444667899999999999999999999988  999999999999998764

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=4.7e-35  Score=247.24  Aligned_cols=187  Identities=21%  Similarity=0.237  Sum_probs=158.1

Q ss_pred             CCCCCcEEEEecC--CCchHHHHHHHHHHcCCeEEEEEecc--chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGA--SSGIGTETARVLALRGVHVIMAVRNM--AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        25 ~~~~~k~vlItG~--s~giG~~ia~~L~~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      ..+++|+++||||  ++|||+++|++|+++|++|++++|+.  +.+++..+++     +.++.++++|++|+++++.+++
T Consensus         3 ~~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~   77 (256)
T PRK07889          3 GLLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL-----PEPAPVLELDVTNEEHLASLAD   77 (256)
T ss_pred             ccccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc-----CCCCcEEeCCCCCHHHHHHHHH
Confidence            4478999999999  89999999999999999999999864  2233333322     2367899999999999999999


Q ss_pred             HHhcCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          101 EYNSQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      ++.+++|++|++|||||+..      ++.+.+.++|++++++|+.++++++++++|+|++       +|+||++++... 
T Consensus        78 ~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~-------~g~Iv~is~~~~-  149 (256)
T PRK07889         78 RVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNE-------GGSIVGLDFDAT-  149 (256)
T ss_pred             HHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhccc-------CceEEEEeeccc-
Confidence            99999999999999999763      3446678999999999999999999999999964       479999986431 


Q ss_pred             cccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          175 FAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      .               +.+.+..|++||+|+.+|+++++.|+.++|  |+||+|+||+++|++.+..
T Consensus       150 ~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~g--Irvn~v~PG~v~T~~~~~~  199 (256)
T PRK07889        150 V---------------AWPAYDWMGVAKAALESTNRYLARDLGPRG--IRVNLVAAGPIRTLAAKAI  199 (256)
T ss_pred             c---------------cCCccchhHHHHHHHHHHHHHHHHHhhhcC--eEEEeeccCcccChhhhcc
Confidence            1               334667899999999999999999999988  9999999999999986543

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=5.7e-35  Score=247.29  Aligned_cols=187  Identities=18%  Similarity=0.166  Sum_probs=157.1

Q ss_pred             CCCcEEEEecC--CCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGA--SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~--s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++|++|||||  ++|||+++|++|+++|++|++++|.. ...+..+++.+..+  ...++++|++|+++++.+++++.+
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~   80 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGD-RFKDRITEFAAEFG--SDLVFPCDVASDEQIDALFASLGQ   80 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccch-HHHHHHHHHHHhcC--CcceeeccCCCHHHHHHHHHHHHH
Confidence            67899999996  68999999999999999999987652 22333444443322  235789999999999999999999


Q ss_pred             CCCCeeEEEEccCCCCC-------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          105 QGRPLNILINNAGIMAS-------PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~-------~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      ++|++|++|||||....       ..+.+.++|++.+++|+.++++++|+++|+|.+       .|+||++||..+..  
T Consensus        81 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~-------~g~Ii~iss~~~~~--  151 (260)
T PRK06997         81 HWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSD-------DASLLTLSYLGAER--  151 (260)
T ss_pred             HhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCC-------CceEEEEecccccc--
Confidence            99999999999997632       234678899999999999999999999999943       47999999988654  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                   +.+.+..|+++|+|+.+|+++++.|++++|  |+||+|+||+++|++...
T Consensus       152 -------------~~~~~~~Y~asKaal~~l~~~la~el~~~g--IrVn~i~PG~v~T~~~~~  199 (260)
T PRK06997        152 -------------VVPNYNTMGLAKASLEASVRYLAVSLGPKG--IRANGISAGPIKTLAASG  199 (260)
T ss_pred             -------------CCCCcchHHHHHHHHHHHHHHHHHHhcccC--eEEEEEeeCccccchhcc
Confidence                         445677899999999999999999999988  999999999999987543

>PRK05872 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-34  Score=249.00  Aligned_cols=193  Identities=27%  Similarity=0.285  Sum_probs=171.3

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ++.++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++..   +.++..+.+|++|.++++.+++++
T Consensus         3 ~~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~   79 (296)
T PRK05872          3 PMTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEA   79 (296)
T ss_pred             CCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHH
Confidence            44568899999999999999999999999999999999998887777766532   346777889999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+.++++|++|||||...  +..+.+.++|++++++|+.++++++++++|++.+      +.|+||++||..+..     
T Consensus        80 ~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~------~~g~iv~isS~~~~~-----  148 (296)
T PRK05872         80 VERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIE------RRGYVLQVSSLAAFA-----  148 (296)
T ss_pred             HHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH------cCCEEEEEeCHhhcC-----
Confidence            999999999999999763  4567889999999999999999999999999976      257999999988765     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                +.++...|+++|+++++|+++++.++.++|  |++|+|+||+++|++.+..
T Consensus       149 ----------~~~~~~~Y~asKaal~~~~~~l~~e~~~~g--i~v~~v~Pg~v~T~~~~~~  197 (296)
T PRK05872        149 ----------AAPGMAAYCASKAGVEAFANALRLEVAHHG--VTVGSAYLSWIDTDLVRDA  197 (296)
T ss_pred             ----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHC--cEEEEEecCcccchhhhhc
Confidence                      445678999999999999999999999988  9999999999999987653

>PRK08265 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-34  Score=243.82  Aligned_cols=188  Identities=24%  Similarity=0.291  Sum_probs=166.1

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++     +.++.++++|++|++++.++++++.+
T Consensus         2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~   76 (261)
T PRK08265          2 IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVA   76 (261)
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence            3478899999999999999999999999999999999987766665554     34688999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          105 QGRPLNILINNAGIMA-SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~-~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      .++++|++|||||... ...+.+.++|.+.+++|+.++++++++++++|.+      +.|+||++||..+..        
T Consensus        77 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~------~~g~ii~isS~~~~~--------  142 (261)
T PRK08265         77 RFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLAR------GGGAIVNFTSISAKF--------  142 (261)
T ss_pred             HhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhc------CCcEEEEECchhhcc--------
Confidence            9999999999999753 2345688999999999999999999999999963      358999999988765        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                             +.+....|+++|+++.+++++++.++.+.|  |++|+|+||+++|++.+.
T Consensus       143 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~vn~v~PG~~~t~~~~~  190 (261)
T PRK08265        143 -------AQTGRWLYPASKAAIRQLTRSMAMDLAPDG--IRVNSVSPGWTWSRVMDE  190 (261)
T ss_pred             -------CCCCCchhHHHHHHHHHHHHHHHHHhcccC--EEEEEEccCCccChhhhh
Confidence                   444667899999999999999999999888  999999999999998654

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=100.00  E-value=2.5e-34  Score=245.35  Aligned_cols=195  Identities=28%  Similarity=0.320  Sum_probs=172.5

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++...  +.++.++++|++|++++..+++++
T Consensus         4 ~~~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~   81 (278)
T PRK08277          4 NLFSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA--GGEALAVKADVLDKESLEQARQQI   81 (278)
T ss_pred             ceeccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHH
Confidence            344678999999999999999999999999999999999988888887777654  557899999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC-----------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeE
Q 025275          103 NSQGRPLNILINNAGIMA-----------------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRI  165 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~-----------------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~i  165 (255)
                      .++++++|++|||||...                 ++.+.+.++|++.+++|+.+++.+++++++.+.+     .+.|+|
T Consensus        82 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~g~i  156 (278)
T PRK08277         82 LEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVG-----RKGGNI  156 (278)
T ss_pred             HHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-----cCCcEE
Confidence            999999999999999642                 2345678899999999999999999999999986     456899


Q ss_pred             EEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          166 VNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       166 i~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      |++||..+..               +.++...|+++|+|+++++++++.++.+.|  |++|+|+||+++|++.+..
T Consensus       157 i~isS~~~~~---------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~g--irvn~v~Pg~v~t~~~~~~  215 (278)
T PRK08277        157 INISSMNAFT---------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVG--IRVNAIAPGFFLTEQNRAL  215 (278)
T ss_pred             EEEccchhcC---------------CCCCCchhHHHHHHHHHHHHHHHHHhCccC--eEEEEEEeccCcCcchhhh
Confidence            9999998765               455678899999999999999999999888  9999999999999986543

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=100.00  E-value=2.9e-34  Score=241.81  Aligned_cols=195  Identities=18%  Similarity=0.240  Sum_probs=167.9

Q ss_pred             ccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ++.++++||++|||||++|||++++++|+++|++|++++++.  ..+..+++...  +.++.++++|++|+++++.++++
T Consensus         3 ~~~~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~--~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~   78 (253)
T PRK08993          3 LDAFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE--PTETIEQVTAL--GRRFLSLTADLRKIDGIPALLER   78 (253)
T ss_pred             ccccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc--hHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHH
Confidence            345678999999999999999999999999999999887754  34455555543  45788999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.++++++|++|||||...  +..+.+.++|.+++++|+.+++++++++++.|.++    +..|+||++||..+..    
T Consensus        79 ~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~----~~~g~iv~isS~~~~~----  150 (253)
T PRK08993         79 AVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQ----GNGGKIINIASMLSFQ----  150 (253)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhC----CCCeEEEEECchhhcc----
Confidence            9999999999999999763  35567889999999999999999999999999762    2358999999988665    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                 +.+....|+++|+|+++++++++.++.++|  |+||+|+||+++|++....
T Consensus       151 -----------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~g--i~v~~v~pG~v~T~~~~~~  199 (253)
T PRK08993        151 -----------GGIRVPSYTASKSGVMGVTRLMANEWAKHN--INVNAIAPGYMATNNTQQL  199 (253)
T ss_pred             -----------CCCCCcchHHHHHHHHHHHHHHHHHhhhhC--eEEEEEeeCcccCcchhhh
Confidence                       344567899999999999999999999988  9999999999999987643

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=100.00  E-value=3.5e-34  Score=241.89  Aligned_cols=195  Identities=26%  Similarity=0.296  Sum_probs=170.6

Q ss_pred             cccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           21 VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        21 ~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      .++.+++++|++|||||++|||.+++++|+++|++|++++|+ ++.++..+.+...  +.++.++++|++++++++.+++
T Consensus         7 ~~~~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~   83 (258)
T PRK06935          7 SMDFFSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE--GRKVTFVQVDLTKPESAEKVVK   83 (258)
T ss_pred             ccccccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHH
Confidence            345567899999999999999999999999999999999998 5566666555443  4578999999999999999999


Q ss_pred             HHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          101 EYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      ++.+.+|++|++|||||...  +..+.+.++|++.+++|+.+++.+++++++++.+     ++.|+||++||..+..   
T Consensus        84 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~---  155 (258)
T PRK06935         84 EALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAK-----QGSGKIINIASMLSFQ---  155 (258)
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHh-----cCCeEEEEECCHHhcc---
Confidence            99999999999999999763  3456778899999999999999999999999987     4568999999988765   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                  +.+....|+++|+++++++++++.++.++|  |+||+|+||+++|++.+.
T Consensus       156 ------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~i~PG~v~t~~~~~  203 (258)
T PRK06935        156 ------------GGKFVPAYTASKHGVAGLTKAFANELAAYN--IQVNAIAPGYIKTANTAP  203 (258)
T ss_pred             ------------CCCCchhhHHHHHHHHHHHHHHHHHhhhhC--eEEEEEEeccccccchhh
Confidence                        344667999999999999999999999888  999999999999998654

>PLN02253 xanthoxin dehydrogenase

Probab=100.00  E-value=3.6e-34  Score=244.61  Aligned_cols=196  Identities=24%  Similarity=0.259  Sum_probs=169.2

Q ss_pred             cccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHH
Q 025275           19 EEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        19 ~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      ....+..++++|++|||||++|||++++++|+++|++|++++|+.+..++..+++.   .+.++.++++|++|+++++++
T Consensus         8 ~~~~~~~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~   84 (280)
T PLN02253          8 ASSLPSQRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRA   84 (280)
T ss_pred             hccccccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHH
Confidence            33444566889999999999999999999999999999999998776666555542   134789999999999999999


Q ss_pred             HHHHhcCCCCeeEEEEccCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275           99 ASEYNSQGRPLNILINNAGIMA----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      ++++.+.++++|+||||||...    +..+.+.+++++++++|+.+++++++++++.+.+     .+.|+||+++|..+.
T Consensus        85 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~ii~isS~~~~  159 (280)
T PLN02253         85 VDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIP-----LKKGSIVSLCSVASA  159 (280)
T ss_pred             HHHHHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHh-----cCCceEEEecChhhc
Confidence            9999999999999999999753    2456788999999999999999999999999976     456899999998876


Q ss_pred             cccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          175 FAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      .               +.++...|+++|+++++++++++.++..+|  |++|+|+||.++|++..
T Consensus       160 ~---------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~i~pg~v~t~~~~  207 (280)
T PLN02253        160 I---------------GGLGPHAYTGSKHAVLGLTRSVAAELGKHG--IRVNCVSPYAVPTALAL  207 (280)
T ss_pred             c---------------cCCCCcccHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeeCcccccccc
Confidence            5               333456899999999999999999999888  99999999999999754

>PRK07035 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.6e-34  Score=239.66  Aligned_cols=193  Identities=30%  Similarity=0.362  Sum_probs=172.1

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++++|+++||||++|||.+++++|+++|++|++++|+.+.+++..+++...  +.++.++++|+++.++++.+++++.+
T Consensus         4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (252)
T PRK07035          4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA--GGKAEALACHIGEMEQIDALFAHIRE   81 (252)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            5688999999999999999999999999999999999988888877777654  45688999999999999999999999


Q ss_pred             CCCCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      .++++|++|||||..   .+..+.+.+++++.+++|+.+++.++++++|++.+     ...++||++||..+..      
T Consensus        82 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~------  150 (252)
T PRK07035         82 RHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKE-----QGGGSIVNVASVNGVS------  150 (252)
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----CCCcEEEEECchhhcC------
Confidence            999999999999964   24456788999999999999999999999999986     4568999999987765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++...|++||+++++++++++.++.++|  |++|+|+||+++|++.+..
T Consensus       151 ---------~~~~~~~Y~~sK~al~~~~~~l~~e~~~~g--i~v~~i~PG~v~t~~~~~~  199 (252)
T PRK07035        151 ---------PGDFQGIYSITKAAVISMTKAFAKECAPFG--IRVNALLPGLTDTKFASAL  199 (252)
T ss_pred             ---------CCCCCcchHHHHHHHHHHHHHHHHHHhhcC--EEEEEEeeccccCcccccc
Confidence                     445678999999999999999999999988  9999999999999986643

>PRK09242 tropinone reductase; Provisional

Probab=100.00  E-value=5.3e-34  Score=240.55  Aligned_cols=197  Identities=29%  Similarity=0.336  Sum_probs=176.0

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++....++.++.++.+|++++++++.+++++
T Consensus         3 ~~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   82 (257)
T PRK09242          3 HRWRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWV   82 (257)
T ss_pred             cccccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            34578899999999999999999999999999999999999888888888776655678999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+.++++|++|||||...  +..+.+.+++.+.+++|+.++++++++++|+|.+     .+.++||++||..+..     
T Consensus        83 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~ii~~sS~~~~~-----  152 (257)
T PRK09242         83 EDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQ-----HASSAIVNIGSVSGLT-----  152 (257)
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-----cCCceEEEECccccCC-----
Confidence            999999999999999753  3456789999999999999999999999999986     4468999999988765     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                +.++...|+++|+++.+++++++.++...|  |++|+|+||+++|++.+..
T Consensus       153 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~--i~v~~i~Pg~i~t~~~~~~  201 (257)
T PRK09242        153 ----------HVRSGAPYGMTKAALLQMTRNLAVEWAEDG--IRVNAVAPWYIRTPLTSGP  201 (257)
T ss_pred             ----------CCCCCcchHHHHHHHHHHHHHHHHHHHHhC--eEEEEEEECCCCCcccccc
Confidence                      445667899999999999999999998888  9999999999999987644

>PRK06172 short chain dehydrogenase; Provisional

Probab=100.00  E-value=6e-34  Score=239.60  Aligned_cols=193  Identities=28%  Similarity=0.315  Sum_probs=172.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +.+++|+++||||+|+||.+++++|+++|++|++++|+.+.+++..+++.+.  +.++.++.+|++|.+++..+++++.+
T Consensus         3 ~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~   80 (253)
T PRK06172          3 MTFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA--GGEALFVACDVTRDAEVKALVEQTIA   80 (253)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999988887777777654  55789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      .+|++|++|||+|...   +..+.+.+++++++++|+.+++.++++++|++.+     .+.+++|++||..+..      
T Consensus        81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~ii~~sS~~~~~------  149 (253)
T PRK06172         81 AYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLA-----QGGGAIVNTASVAGLG------  149 (253)
T ss_pred             HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEECchhhcc------
Confidence            9999999999999753   2456788999999999999999999999999976     4567999999988765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++...|+++|+++++++++++.++.++|  |++|+|+||+++|++++..
T Consensus       150 ---------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~--i~v~~i~PG~v~t~~~~~~  198 (253)
T PRK06172        150 ---------AAPKMSIYAASKHAVIGLTKSAAIEYAKKG--IRVNAVCPAVIDTDMFRRA  198 (253)
T ss_pred             ---------CCCCCchhHHHHHHHHHHHHHHHHHhcccC--eEEEEEEeCCccChhhhhh
Confidence                     455678999999999999999999999888  9999999999999997754

>PRK07109 short chain dehydrogenase; Provisional

Probab=100.00  E-value=6.3e-34  Score=249.10  Aligned_cols=194  Identities=23%  Similarity=0.251  Sum_probs=173.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ..+++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++.+.  +.++.++++|++|+++++++++++.+
T Consensus         4 ~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~--g~~~~~v~~Dv~d~~~v~~~~~~~~~   81 (334)
T PRK07109          4 KPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA--GGEALAVVADVADAEAVQAAADRAEE   81 (334)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999998888888888765  56889999999999999999999999


Q ss_pred             CCCCeeEEEEccCCC--CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|++|||||..  .+..+.+.+++++.+++|+.+++++++++++++.+     .+.|+||++||..+..       
T Consensus        82 ~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~-----~~~g~iV~isS~~~~~-------  149 (334)
T PRK07109         82 ELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRP-----RDRGAIIQVGSALAYR-------  149 (334)
T ss_pred             HCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEeCChhhcc-------
Confidence            999999999999975  34567889999999999999999999999999987     4568999999998775       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.+.+..|+++|+++.+|+++++.|+..++.+|++++|+||.++|+++..
T Consensus       150 --------~~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~  199 (334)
T PRK07109        150 --------SIPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDW  199 (334)
T ss_pred             --------CCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhh
Confidence                    44466889999999999999999999876556999999999999997653

>PRK06197 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.1e-34  Score=246.84  Aligned_cols=212  Identities=46%  Similarity=0.638  Sum_probs=176.4

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++|++|||||++|||+++|++|+++|++|++++|+.+...+..+++....++.++.++++|++|.++++++++++.
T Consensus        11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~   90 (306)
T PRK06197         11 IPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR   90 (306)
T ss_pred             cccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999988887777777655445678999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++++++|+||||||...+....+.+++...+++|+.|++.+++.+++.+++     ...++||++||..+....  ..++
T Consensus        91 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~-----~~~~~iV~vSS~~~~~~~--~~~~  163 (306)
T PRK06197         91 AAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLP-----VPGSRVVTVSSGGHRIRA--AIHF  163 (306)
T ss_pred             hhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhh-----CCCCEEEEECCHHHhccC--CCCc
Confidence            999999999999998765555677889999999999999999999999986     346799999998754311  1122


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      +......++.+...|+.||++++++++.++.++..++.+|.+++++||+|+|++.+...
T Consensus       164 ~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~~~~~  222 (306)
T PRK06197        164 DDLQWERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELARNLP  222 (306)
T ss_pred             cccCcccCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcccccCc
Confidence            23333345556778999999999999999999988884555566689999999877543

>PRK06398 aldose dehydrogenase; Validated

Probab=100.00  E-value=4e-34  Score=241.75  Aligned_cols=180  Identities=29%  Similarity=0.317  Sum_probs=160.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|++|||||++|||++++++|+++|++|++++|+.+.             ..++.++++|++|+++++++++++.+
T Consensus         2 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~-------------~~~~~~~~~D~~~~~~i~~~~~~~~~   68 (258)
T PRK06398          2 LGLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS-------------YNDVDYFKVDVSNKEQVIKGIDYVIS   68 (258)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc-------------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999998653             12578999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++|||||...  +..+.+.++|++++++|+.++++++++++|+|.+     .+.|+||++||..+..       
T Consensus        69 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~-------  136 (258)
T PRK06398         69 KYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLK-----QDKGVIINIASVQSFA-------  136 (258)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCeEEEEeCcchhcc-------
Confidence            9999999999999753  4566789999999999999999999999999986     4568999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|+++++++++++.|+.+ +  |+||+|+||+++|++...
T Consensus       137 --------~~~~~~~Y~~sKaal~~~~~~la~e~~~-~--i~vn~i~PG~v~T~~~~~  183 (258)
T PRK06398        137 --------VTRNAAAYVTSKHAVLGLTRSIAVDYAP-T--IRCVAVCPGSIRTPLLEW  183 (258)
T ss_pred             --------CCCCCchhhhhHHHHHHHHHHHHHHhCC-C--CEEEEEecCCccchHHhh
Confidence                    4556789999999999999999999975 3  999999999999998654

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=100.00  E-value=9e-34  Score=240.33  Aligned_cols=195  Identities=23%  Similarity=0.304  Sum_probs=173.7

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +.+++++|+++||||+++||++++++|+++|++|++++|+.+++.+..+.+...  +.++.++++|++|+++++.+++++
T Consensus         4 ~~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~   81 (265)
T PRK07097          4 NLFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL--GIEAHGYVCDVTDEDGVQAMVSQI   81 (265)
T ss_pred             cccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999988887777777654  557899999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+.++++|++|||||...  +..+.+.+++.+++++|+.+++.+++.++++|.+     .+.++||++||..+..     
T Consensus        82 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~-----  151 (265)
T PRK07097         82 EKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-----KGHGKIINICSMMSEL-----  151 (265)
T ss_pred             HHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-----cCCcEEEEEcCccccC-----
Confidence            999999999999999764  3456788999999999999999999999999987     4578999999987655     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                +.++...|+++|+++.+++++++.++.+.|  |+||+|+||.++|++....
T Consensus       152 ----------~~~~~~~Y~~sKaal~~l~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~~  200 (265)
T PRK07097        152 ----------GRETVSAYAAAKGGLKMLTKNIASEYGEAN--IQCNGIGPGYIATPQTAPL  200 (265)
T ss_pred             ----------CCCCCccHHHHHHHHHHHHHHHHHHhhhcC--ceEEEEEeccccccchhhh
Confidence                      334668899999999999999999999988  9999999999999986543

>PRK12747 short chain dehydrogenase; Provisional

Probab=100.00  E-value=6.3e-34  Score=239.41  Aligned_cols=188  Identities=29%  Similarity=0.353  Sum_probs=161.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEE-eccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc-
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAV-RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS-  104 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~-  104 (255)
                      +++|++|||||++|||++++++|++.|++|++++ |+.+...+..+++...  +.++..+++|+++.+++..+++++.+ 
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN--GGSAFSIGANLESLHGVEALYSSLDNE   79 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhc--CCceEEEecccCCHHHHHHHHHHHHHH
Confidence            3579999999999999999999999999998875 5556666666666554  45678899999999999999888765 


Q ss_pred             ---CCC--CeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          105 ---QGR--PLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       105 ---~~g--~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                         .++  ++|++|||||...  +..+.+.++|++++++|+.++++++++++|.|.+       .|+||++||..+..  
T Consensus        80 ~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~-------~g~iv~isS~~~~~--  150 (252)
T PRK12747         80 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD-------NSRIINISSAATRI--  150 (252)
T ss_pred             hhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhc-------CCeEEEECCccccc--
Confidence               334  8999999999753  3456788999999999999999999999999964       47999999998765  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                   +.++...|++||+++++++++++.++.++|  |++|+|+||+|+|++.++
T Consensus       151 -------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~g--irvn~v~Pg~v~t~~~~~  198 (252)
T PRK12747        151 -------------SLPDFIAYSMTKGAINTMTFTLAKQLGARG--ITVNAILPGFIKTDMNAE  198 (252)
T ss_pred             -------------CCCCchhHHHHHHHHHHHHHHHHHHHhHcC--CEEEEEecCCccCchhhh
Confidence                         445668899999999999999999999988  999999999999998654

>PRK05599 hypothetical protein; Provisional

Probab=100.00  E-value=5.1e-34  Score=239.52  Aligned_cols=190  Identities=17%  Similarity=0.232  Sum_probs=165.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |+++||||++|||+++|++|+ +|++|++++|+.++++++.+++.+.. ...+.++++|++|+++++.+++++.+.+|++
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   78 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRG-ATSVHVLSFDAQDLDTHRELVKQTQELAGEI   78 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence            579999999999999999999 59999999999999988888886642 2357899999999999999999999999999


Q ss_pred             eEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          110 NILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       110 d~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      |++|||||...+  ..+.+.+.+.+++++|+.+.+++++.++|.|.++    ..+|+||++||.++..            
T Consensus        79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~----~~~g~Iv~isS~~~~~------------  142 (246)
T PRK05599         79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQ----TAPAAIVAFSSIAGWR------------  142 (246)
T ss_pred             CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhc----CCCCEEEEEecccccc------------
Confidence            999999998643  3345667788899999999999999999999752    2358999999998765            


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                         +.++...|+++|+|+.+|+++++.|+.++|  |+||+|+||+++|++.....
T Consensus       143 ---~~~~~~~Y~asKaa~~~~~~~la~el~~~~--I~v~~v~PG~v~T~~~~~~~  192 (246)
T PRK05599        143 ---ARRANYVYGSTKAGLDAFCQGLADSLHGSH--VRLIIARPGFVIGSMTTGMK  192 (246)
T ss_pred             ---CCcCCcchhhHHHHHHHHHHHHHHHhcCCC--ceEEEecCCcccchhhcCCC
Confidence               444678999999999999999999998888  99999999999999876543

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=100.00  E-value=9.6e-34  Score=238.70  Aligned_cols=195  Identities=28%  Similarity=0.335  Sum_probs=172.9

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +.+++++|++|||||+++||++++++|+++|++|++++|+.+.+++..+.+...  +.++.++++|++|+++++.+++++
T Consensus         4 ~~~~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~   81 (255)
T PRK07523          4 NLFDLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAF   81 (255)
T ss_pred             cccCCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHH
Confidence            445688999999999999999999999999999999999988877777777554  457899999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+.++++|++|||+|...  +..+.+.+++++++++|+.+++++++++.++|.+     +..|+||++||..+..     
T Consensus        82 ~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~g~iv~iss~~~~~-----  151 (255)
T PRK07523         82 EAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIA-----RGAGKIINIASVQSAL-----  151 (255)
T ss_pred             HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----hCCeEEEEEccchhcc-----
Confidence            999999999999999763  3456788999999999999999999999999987     4568999999987554     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                +.+++..|+++|+++++++++++.++.++|  |+||+|+||+++|++....
T Consensus       152 ----------~~~~~~~y~~sK~a~~~~~~~~a~e~~~~g--i~v~~i~pg~~~t~~~~~~  200 (255)
T PRK07523        152 ----------ARPGIAPYTATKGAVGNLTKGMATDWAKHG--LQCNAIAPGYFDTPLNAAL  200 (255)
T ss_pred             ----------CCCCCccHHHHHHHHHHHHHHHHHHhhHhC--eEEEEEEECcccCchhhhh
Confidence                      445678999999999999999999999988  9999999999999986543

>PRK07985 oxidoreductase; Provisional

Probab=100.00  E-value=1.2e-33  Score=243.27  Aligned_cols=189  Identities=26%  Similarity=0.273  Sum_probs=163.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc--chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM--AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++|++|||||++|||++++++|+++|++|++++|+.  +..+++.+.+...  +.++.++.+|++|++++.++++++
T Consensus        45 ~~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~  122 (294)
T PRK07985         45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEEC--GRKAVLLPGDLSDEKFARSLVHEA  122 (294)
T ss_pred             CccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHc--CCeEEEEEccCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999988754  3344444444333  457889999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          103 NSQGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      .+.+|++|++|||||..   .+..+.+.++|.+++++|+.+++.++++++|+|.+       .|+||++||..+..    
T Consensus       123 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-------~g~iv~iSS~~~~~----  191 (294)
T PRK07985        123 HKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPK-------GASIITTSSIQAYQ----  191 (294)
T ss_pred             HHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhc-------CCEEEEECCchhcc----
Confidence            99999999999999964   24567789999999999999999999999999864       47999999988765    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                 +.+....|+++|+|+++++++++.++.++|  |++|+|+||+++|++..
T Consensus       192 -----------~~~~~~~Y~asKaal~~l~~~la~el~~~g--Irvn~i~PG~v~t~~~~  238 (294)
T PRK07985        192 -----------PSPHLLDYAATKAAILNYSRGLAKQVAEKG--IRVNIVAPGPIWTALQI  238 (294)
T ss_pred             -----------CCCCcchhHHHHHHHHHHHHHHHHHHhHhC--cEEEEEECCcCcccccc
Confidence                       444667899999999999999999999988  99999999999999853

>PRK07831 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-33  Score=237.15  Aligned_cols=195  Identities=23%  Similarity=0.251  Sum_probs=170.5

Q ss_pred             CCCCCcEEEEecCCC-chHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASS-GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~-giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ..+++|++|||||+| |||++++++|+++|++|++++|+.+++++..+++.+..+..++.++++|++++++++.+++++.
T Consensus        13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   92 (262)
T PRK07831         13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV   92 (262)
T ss_pred             cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            345689999999985 9999999999999999999999988888877777664444578899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.+|++|++|||||...  +..+.+.++|.+.+++|+.+++.++++++|.+.+.    ...|+||+++|..+..      
T Consensus        93 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~~g~iv~~ss~~~~~------  162 (262)
T PRK07831         93 ERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRAR----GHGGVIVNNASVLGWR------  162 (262)
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCcEEEEeCchhhcC------
Confidence            98999999999999753  35567889999999999999999999999999862    1268999999987665      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|+++++++++++.++.++|  |+||+|+||+++|++.+.
T Consensus       163 ---------~~~~~~~Y~~sKaal~~~~~~la~e~~~~g--I~v~~i~Pg~~~t~~~~~  210 (262)
T PRK07831        163 ---------AQHGQAHYAAAKAGVMALTRCSALEAAEYG--VRINAVAPSIAMHPFLAK  210 (262)
T ss_pred             ---------CCCCCcchHHHHHHHHHHHHHHHHHhCccC--eEEEEEeeCCccCccccc
Confidence                     344677899999999999999999999988  999999999999998754

>PRK06196 oxidoreductase; Provisional

Probab=100.00  E-value=2.2e-33  Score=243.85  Aligned_cols=210  Identities=46%  Similarity=0.619  Sum_probs=174.0

Q ss_pred             cccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHH
Q 025275           17 TAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVR   96 (255)
Q Consensus        17 ~~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~   96 (255)
                      ....+.+..++++|++|||||+||||++++++|+++|++|++++|+.++.++..+++.      .+.++++|++|.++++
T Consensus        14 ~~~~~~~~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~   87 (315)
T PRK06196         14 TAEEVLAGHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVR   87 (315)
T ss_pred             cHHHHhcCCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHH
Confidence            3445555567889999999999999999999999999999999999877766665542      3788999999999999


Q ss_pred             HHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275           97 KFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus        97 ~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      ++++++.+.++++|+||||||...+....+.++++..+++|+.+++++++.++|.+.+     ...++||++||..+...
T Consensus        88 ~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~-----~~~~~iV~vSS~~~~~~  162 (315)
T PRK06196         88 AFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAA-----GAGARVVALSSAGHRRS  162 (315)
T ss_pred             HHHHHHHhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCCeEEEECCHHhccC
Confidence            9999999999999999999998755555677889999999999999999999999987     34579999999765432


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      ..   ++.......++.+...|+.||+++..+++.++.++...|  |++|+|+||++.|++.+...
T Consensus       163 ~~---~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~g--i~v~~v~PG~v~t~~~~~~~  223 (315)
T PRK06196        163 PI---RWDDPHFTRGYDKWLAYGQSKTANALFAVHLDKLGKDQG--VRAFSVHPGGILTPLQRHLP  223 (315)
T ss_pred             CC---CccccCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC--cEEEEeeCCcccCCccccCC
Confidence            11   111112233455667899999999999999999998888  99999999999999876543

>PRK06128 oxidoreductase; Provisional

Probab=100.00  E-value=2.8e-33  Score=241.68  Aligned_cols=189  Identities=26%  Similarity=0.319  Sum_probs=164.7

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc--hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA--AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++|++|||||++|||++++++|+++|++|++++++.+  ..++..+.+...  +.++.++++|++|.++++++++++.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~  129 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE--GRKAVALPGDLKDEAFCRQLVERAV  129 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHHH
Confidence            478899999999999999999999999999999887643  344455555543  5578899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          104 SQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      +.++++|+||||||...   +..+.+.++|.+++++|+.++++++++++++|.+       +++||++||..++.     
T Consensus       130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-------~~~iv~~sS~~~~~-----  197 (300)
T PRK06128        130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPP-------GASIINTGSIQSYQ-----  197 (300)
T ss_pred             HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCc-------CCEEEEECCccccC-----
Confidence            99999999999999752   3557789999999999999999999999999864       57999999988765     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +.+....|+++|+++++|+++++.++.++|  |+||+|+||+++|++...
T Consensus       198 ----------~~~~~~~Y~asK~a~~~~~~~la~el~~~g--I~v~~v~PG~i~t~~~~~  245 (300)
T PRK06128        198 ----------PSPTLLDYASTKAAIVAFTKALAKQVAEKG--IRVNAVAPGPVWTPLQPS  245 (300)
T ss_pred             ----------CCCCchhHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEEECcCcCCCccc
Confidence                      444667899999999999999999999888  999999999999998643

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-33  Score=238.13  Aligned_cols=186  Identities=21%  Similarity=0.203  Sum_probs=164.5

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++|||||++|||++++++|+++|++|++++|+.+.+++..+++.+.   .++.++++|++|+++++++++++.++++++
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i   77 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVKEAWELLGGI   77 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            36999999999999999999999999999999988888888877653   268899999999999999999999999999


Q ss_pred             eEEEEccCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          110 NILINNAGIMA----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       110 d~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      |+||||||...    +..+.+.++|.+.+.+|+.+++.+++.+++.+.+.    ..+|+||++||..+..          
T Consensus        78 d~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~----~~~g~iv~isS~~~~~----------  143 (259)
T PRK08340         78 DALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEK----KMKGVLVYLSSVSVKE----------  143 (259)
T ss_pred             CEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhc----CCCCEEEEEeCcccCC----------
Confidence            99999999752    24567788999999999999999999999988641    3468999999988654          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                           +.++...|+++|+|+.+|+|+++.++.++|  |+||+|+||+++|++.+
T Consensus       144 -----~~~~~~~y~~sKaa~~~~~~~la~e~~~~g--I~v~~v~pG~v~t~~~~  190 (259)
T PRK08340        144 -----PMPPLVLADVTRAGLVQLAKGVSRTYGGKG--IRAYTVLLGSFDTPGAR  190 (259)
T ss_pred             -----CCCCchHHHHHHHHHHHHHHHHHHHhCCCC--EEEEEeccCcccCccHH
Confidence                 445677899999999999999999999988  99999999999999875

>PRK08643 acetoin reductase; Validated

Probab=100.00  E-value=2.8e-33  Score=235.96  Aligned_cols=189  Identities=25%  Similarity=0.326  Sum_probs=167.6

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++|||||++|||++++++|+++|++|++++|+.+.+.+...++...  +.++.++++|++++++++++++++.+++++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   79 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD--GGKAIAVKADVSDRDQVFAAVRQVVDTFGD   79 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999999999999999988877777777654  457889999999999999999999999999


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|++|||||...  +..+.+.+++++++++|+.+++.+++.+++.+++.    +..++||++||..+..           
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~~~~iv~~sS~~~~~-----------  144 (256)
T PRK08643         80 LNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKL----GHGGKIINATSQAGVV-----------  144 (256)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCCEEEEECcccccc-----------
Confidence            999999999753  35567889999999999999999999999999762    2357999999988765           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                          +.++...|+++|++++++++.++.++.+.|  |+||+|+||+++|+++..
T Consensus       145 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~i~Pg~v~t~~~~~  192 (256)
T PRK08643        145 ----GNPELAVYSSTKFAVRGLTQTAARDLASEG--ITVNAYAPGIVKTPMMFD  192 (256)
T ss_pred             ----CCCCCchhHHHHHHHHHHHHHHHHHhcccC--cEEEEEeeCCCcChhhhH
Confidence                344567899999999999999999999888  999999999999998764

>PLN02780 ketoreductase/ oxidoreductase

Probab=100.00  E-value=1.3e-33  Score=245.64  Aligned_cols=191  Identities=24%  Similarity=0.316  Sum_probs=160.8

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC--HHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS--LASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~si~~~~~~~~~  104 (255)
                      ..|++++||||++|||+++|++|+++|++|++++|+.+++++..+++.+..++.++..+.+|+++  .+.++.+.+++. 
T Consensus        51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~-  129 (320)
T PLN02780         51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIE-  129 (320)
T ss_pred             ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhc-
Confidence            45899999999999999999999999999999999999999988888776555678899999995  334444444332 


Q ss_pred             CCCCeeEEEEccCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          105 QGRPLNILINNAGIMA----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                       ...+|++|||||...    ++.+.+.+++++++++|+.|++.++++++|.|.+     ++.|+||++||.++...+   
T Consensus       130 -~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~-----~~~g~IV~iSS~a~~~~~---  200 (320)
T PLN02780        130 -GLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLK-----RKKGAIINIGSGAAIVIP---  200 (320)
T ss_pred             -CCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHh-----cCCcEEEEEechhhccCC---
Confidence             124679999999763    3456788999999999999999999999999987     567899999998875310   


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                +.+....|++||+++.+|+++++.|+.++|  |+|++|+||+++|++..
T Consensus       201 ----------~~p~~~~Y~aSKaal~~~~~~L~~El~~~g--I~V~~v~PG~v~T~~~~  247 (320)
T PLN02780        201 ----------SDPLYAVYAATKAYIDQFSRCLYVEYKKSG--IDVQCQVPLYVATKMAS  247 (320)
T ss_pred             ----------CCccchHHHHHHHHHHHHHHHHHHHHhccC--eEEEEEeeCceecCccc
Confidence                      124568999999999999999999999888  99999999999999876

>PRK05866 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.6e-33  Score=239.56  Aligned_cols=198  Identities=25%  Similarity=0.277  Sum_probs=170.3

Q ss_pred             ccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           20 EVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        20 ~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      ..++.+.+++|+++||||+||||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++++|++|++++.+++
T Consensus        31 ~~~~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~  108 (293)
T PRK05866         31 PPRQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA--GGDAMAVPCDLSDLDAVDALV  108 (293)
T ss_pred             CCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHH
Confidence            333567788999999999999999999999999999999999988888887777654  457889999999999999999


Q ss_pred             HHHhcCCCCeeEEEEccCCCCC--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          100 SEYNSQGRPLNILINNAGIMAS--PFM--LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~~--~~~--~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      +++.+.++++|++|||||....  ..+  .+.+++...+++|+.|++.++++++|+|.+     .+.|+||++||.++..
T Consensus       109 ~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~  183 (293)
T PRK05866        109 ADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLE-----RGDGHIINVATWGVLS  183 (293)
T ss_pred             HHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCcEEEEECChhhcC
Confidence            9999999999999999997632  222  135788899999999999999999999987     4568999999965432


Q ss_pred             ccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          176 AYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      .              +.+....|+++|+|+++|+++++.|+...|  |++++|+||.++|+++..
T Consensus       184 ~--------------~~p~~~~Y~asKaal~~l~~~la~e~~~~g--I~v~~v~pg~v~T~~~~~  232 (293)
T PRK05866        184 E--------------ASPLFSVYNASKAALSAVSRVIETEWGDRG--VHSTTLYYPLVATPMIAP  232 (293)
T ss_pred             C--------------CCCCcchHHHHHHHHHHHHHHHHHHhcccC--cEEEEEEcCcccCccccc
Confidence            1              234567899999999999999999999888  999999999999998764

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=100.00  E-value=4.6e-33  Score=234.66  Aligned_cols=193  Identities=28%  Similarity=0.373  Sum_probs=170.4

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+.+++|+++||||++|||++++++|+++|++|++++|+.+..+...+++...  +.++.++.+|++|.+++.++++++.
T Consensus         6 ~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~~~   83 (255)
T PRK06113          6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFAL   83 (255)
T ss_pred             ccCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999988877777777654  5578899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          104 SQGRPLNILINNAGIMAS-PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      +.++++|++|||||...+ ..+.+.+++.+.+++|+.+++++++++.+++.+     .+.++||++||..+..       
T Consensus        84 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~-------  151 (255)
T PRK06113         84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEK-----NGGGVILTITSMAAEN-------  151 (255)
T ss_pred             HHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----cCCcEEEEEecccccC-------
Confidence            999999999999997532 345778999999999999999999999999976     4567999999988654       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +..+...|+++|+++++++++++.++...|  |+||+|+||+++|++.+.
T Consensus       152 --------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~--i~v~~v~pg~~~t~~~~~  199 (255)
T PRK06113        152 --------KNINMTSYASSKAAASHLVRNMAFDLGEKN--IRVNGIAPGAILTDALKS  199 (255)
T ss_pred             --------CCCCcchhHHHHHHHHHHHHHHHHHhhhhC--eEEEEEeccccccccccc
Confidence                    444667899999999999999999999888  999999999999998764

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=4e-33  Score=235.37  Aligned_cols=189  Identities=25%  Similarity=0.322  Sum_probs=163.4

Q ss_pred             CCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEec-----------cchHHHHHHHHHhhCCCCceEEEEeCCCCH
Q 025275           26 DGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRN-----------MAAGKDVREAIVKEIPSAKVDAMELDVSSL   92 (255)
Q Consensus        26 ~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   92 (255)
                      .++||++|||||+  +|||+++|++|+++|++|++++|+           .+.+.+..+++.+.  +.++.++++|++|+
T Consensus         3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~   80 (256)
T PRK12859          3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKN--GVKVSSMELDLTQN   80 (256)
T ss_pred             CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhc--CCeEEEEEcCCCCH
Confidence            5789999999999  499999999999999999998643           12233444445443  56889999999999


Q ss_pred             HHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecC
Q 025275           93 ASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS  170 (255)
Q Consensus        93 ~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS  170 (255)
                      +++.++++++.+.+|++|++|||||...  +..+.+.++|++++++|+.+++.++++++|.+.+     +..|+||++||
T Consensus        81 ~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~g~iv~isS  155 (256)
T PRK12859         81 DAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDK-----KSGGRIINMTS  155 (256)
T ss_pred             HHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh-----cCCeEEEEEcc
Confidence            9999999999999999999999999753  4567889999999999999999999999999986     45789999999


Q ss_pred             CccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          171 EAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      ..+..               +.+++..|+++|+++.+|+++++.++.++|  |++|+|+||+++|++.
T Consensus       156 ~~~~~---------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~--i~v~~v~PG~i~t~~~  206 (256)
T PRK12859        156 GQFQG---------------PMVGELAYAATKGAIDALTSSLAAEVAHLG--ITVNAINPGPTDTGWM  206 (256)
T ss_pred             cccCC---------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhC--eEEEEEEEccccCCCC
Confidence            88654               455778999999999999999999999888  9999999999999864

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=100.00  E-value=1.3e-33  Score=238.92  Aligned_cols=186  Identities=24%  Similarity=0.282  Sum_probs=158.4

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |++++|+++||||++|||++++++|+++|++|++++|+.+.++++.+.    . +.++.++++|++|+++++.+++++.+
T Consensus         1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~----~-~~~~~~~~~D~~~~~~~~~~~~~~~~   75 (262)
T TIGR03325         1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA----H-GDAVVGVEGDVRSLDDHKEAVARCVA   75 (262)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh----c-CCceEEEEeccCCHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999987665554332    1 44688999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC---CCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          105 QGRPLNILINNAGIMA---SPFMLSK----DNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~---~~~~~~~----~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      .++++|++|||||...   +..+.+.    ++|.+.+++|+.+++.++++++|+|.+     . +|++|+++|..+..  
T Consensus        76 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-----~-~g~iv~~sS~~~~~--  147 (262)
T TIGR03325        76 AFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVA-----S-RGSVIFTISNAGFY--  147 (262)
T ss_pred             HhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhh-----c-CCCEEEEeccceec--
Confidence            9999999999999752   2223332    478999999999999999999999975     2 47899999988765  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                   +.++...|+++|+|+++|+++++.++.++   |+||+|+||+++|++..
T Consensus       148 -------------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~---irvn~i~PG~i~t~~~~  193 (262)
T TIGR03325       148 -------------PNGGGPLYTAAKHAVVGLVKELAFELAPY---VRVNGVAPGGMSSDLRG  193 (262)
T ss_pred             -------------CCCCCchhHHHHHHHHHHHHHHHHhhccC---eEEEEEecCCCcCCCcc
Confidence                         44456789999999999999999999763   99999999999999865

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-33  Score=238.06  Aligned_cols=186  Identities=25%  Similarity=0.268  Sum_probs=160.4

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +.+++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++     +.++.++++|++|+++++.+++++.+
T Consensus         2 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   76 (263)
T PRK06200          2 GWLHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQTVD   76 (263)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999987765554443     34688999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC---CCCCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          105 QGRPLNILINNAGIMA---SPFMLSKDN----IELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~---~~~~~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      .++++|++|||||+..   +..+.+.++    |++++++|+.+++.++++++|.+++      ..|+||++||..+..  
T Consensus        77 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~------~~g~iv~~sS~~~~~--  148 (263)
T PRK06200         77 AFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKA------SGGSMIFTLSNSSFY--  148 (263)
T ss_pred             hcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHh------cCCEEEEECChhhcC--
Confidence            9999999999999753   333455544    8889999999999999999999875      358999999988765  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                   +.++...|+++|+++++|+++++.++.+ +  |+||+|+||+++|++..
T Consensus       149 -------------~~~~~~~Y~~sK~a~~~~~~~la~el~~-~--Irvn~i~PG~i~t~~~~  194 (263)
T PRK06200        149 -------------PGGGGPLYTASKHAVVGLVRQLAYELAP-K--IRVNGVAPGGTVTDLRG  194 (263)
T ss_pred             -------------CCCCCchhHHHHHHHHHHHHHHHHHHhc-C--cEEEEEeCCccccCCcC
Confidence                         4446678999999999999999999986 4  99999999999999864

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=100.00  E-value=3.4e-33  Score=234.27  Aligned_cols=191  Identities=25%  Similarity=0.309  Sum_probs=164.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++++|++|||||++|||++++++|+++|++|++++|+.  .++..+.+...  +.++.++++|+++++++..+++++.+
T Consensus         1 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   76 (248)
T TIGR01832         1 FSLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEAL--GRRFLSLTADLSDIEAIKALVDSAVE   76 (248)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999875  34445555443  45789999999999999999999998


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++|||||...  +..+.+.++|++++++|+.+++++++++++++.++    +..|+||++||..+..       
T Consensus        77 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~~g~iv~~sS~~~~~-------  145 (248)
T TIGR01832        77 EFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQ----GRGGKIINIASMLSFQ-------  145 (248)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc----CCCeEEEEEecHHhcc-------
Confidence            8999999999999764  34567788999999999999999999999999762    2257999999987664       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.+....|+++|+++.+++++++.++.++|  |+||+|+||+++|++.+.
T Consensus       146 --------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~g--i~v~~v~pg~v~t~~~~~  193 (248)
T TIGR01832       146 --------GGIRVPSYTASKHGVAGLTKLLANEWAAKG--INVNAIAPGYMATNNTQA  193 (248)
T ss_pred             --------CCCCCchhHHHHHHHHHHHHHHHHHhCccC--cEEEEEEECcCcCcchhc
Confidence                    334567899999999999999999999888  999999999999998654

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=3.9e-33  Score=235.09  Aligned_cols=188  Identities=25%  Similarity=0.304  Sum_probs=161.1

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +.+++|+++||||++|||+++|++|+++|++|++++++.+..   .+++...    .+.++++|++|+++++++++++.+
T Consensus         3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~---~~~l~~~----~~~~~~~Dl~~~~~~~~~~~~~~~   75 (255)
T PRK06463          3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENE---AKELREK----GVFTIKCDVGNRDQVKKSKEVVEK   75 (255)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHH---HHHHHhC----CCeEEEecCCCHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999887765432   2333322    478899999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++|||||...  +..+.+.++|++++++|+.+++++++.++|.+.+     .+.|+||++||..+...      
T Consensus        76 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~-----~~~g~iv~isS~~~~~~------  144 (255)
T PRK06463         76 EFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKL-----SKNGAIVNIASNAGIGT------  144 (255)
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHh-----cCCcEEEEEcCHHhCCC------
Confidence            9999999999999763  3456788999999999999999999999999986     45689999999876531      


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|+|+++|+++++.|+.+.|  |+||+|+||+++|++...
T Consensus       145 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~~--i~v~~i~Pg~v~t~~~~~  192 (255)
T PRK06463        145 --------AAEGTTFYAITKAGIIILTRRLAFELGKYG--IRVNAVAPGWVETDMTLS  192 (255)
T ss_pred             --------CCCCccHhHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeeCCCCCchhhc
Confidence                    223557899999999999999999999888  999999999999998754

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=100.00  E-value=5.3e-33  Score=234.74  Aligned_cols=187  Identities=24%  Similarity=0.233  Sum_probs=162.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ..+++|++|||||++|||++++++|+++|++|++++|+. ...+..+++...  +.++.++++|++|++++..+++++.+
T Consensus         4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (260)
T PRK12823          4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE-LVHEVAAELRAA--GGEALALTADLETYAGAQAAMAAAVE   80 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch-HHHHHHHHHHhc--CCeEEEEEEeCCCHHHHHHHHHHHHH
Confidence            347789999999999999999999999999999999985 345556666543  45788999999999999999999999


Q ss_pred             CCCCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      .++++|++|||||..   .+..+.+.+++.+.+++|+.+++.+++.++|.+.+     .+.|+||++||..+..      
T Consensus        81 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~g~iv~~sS~~~~~------  149 (260)
T PRK12823         81 AFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLA-----QGGGAIVNVSSIATRG------  149 (260)
T ss_pred             HcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCeEEEEcCccccC------
Confidence            999999999999854   34567888999999999999999999999999987     4568999999987531      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                                 .....|+++|+++++|+++++.++.++|  |++|+|+||+++|++.
T Consensus       150 -----------~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~  193 (260)
T PRK12823        150 -----------INRVPYSAAKGGVNALTASLAFEYAEHG--IRVNAVAPGGTEAPPR  193 (260)
T ss_pred             -----------CCCCccHHHHHHHHHHHHHHHHHhcccC--cEEEEEecCccCCcch
Confidence                       1335799999999999999999999888  9999999999999863

>PRK08278 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.3e-33  Score=236.79  Aligned_cols=193  Identities=25%  Similarity=0.287  Sum_probs=166.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-------HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-------GKDVREAIVKEIPSAKVDAMELDVSSLASVRK   97 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~   97 (255)
                      +.+++|+++||||++|||.+++++|+++|++|++++|+.+.       +++..+++...  +.++.++++|+++++++..
T Consensus         2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~   79 (273)
T PRK08278          2 MSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAA--GGQALPLVGDVRDEDQVAA   79 (273)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHH
Confidence            55788999999999999999999999999999999998653       34444555443  5578999999999999999


Q ss_pred             HHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275           98 FASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus        98 ~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      +++++.+.++++|++|||||...  +..+.+.+++++++++|+.++++++++++++|.+     ...|+||++||..+..
T Consensus        80 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~-----~~~g~iv~iss~~~~~  154 (273)
T PRK08278         80 AVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKK-----SENPHILTLSPPLNLD  154 (273)
T ss_pred             HHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHh-----cCCCEEEEECCchhcc
Confidence            99999999999999999999753  3456788999999999999999999999999987     4568999999976543


Q ss_pred             ccccCccCCCCCcccCC--CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCC-ceecCccccc
Q 025275          176 AYSEGIRFDKINDESAY--NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPG-SIVTNLFRYN  241 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~--~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG-~v~t~~~~~~  241 (255)
                                     +.  +++..|+++|+++++++++++.|+.+.+  |+||+|+|| .++|++.+..
T Consensus       155 ---------------~~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~--I~v~~i~Pg~~i~t~~~~~~  206 (273)
T PRK08278        155 ---------------PKWFAPHTAYTMAKYGMSLCTLGLAEEFRDDG--IAVNALWPRTTIATAAVRNL  206 (273)
T ss_pred             ---------------ccccCCcchhHHHHHHHHHHHHHHHHHhhhcC--cEEEEEeCCCccccHHHHhc
Confidence                           22  5678999999999999999999999888  999999999 6899876643

>PRK07825 short chain dehydrogenase; Provisional

Probab=100.00  E-value=6e-33  Score=236.22  Aligned_cols=189  Identities=26%  Similarity=0.310  Sum_probs=167.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++++++|||||+||||++++++|+++|++|++++|+.+.+++..+++.      ++.++.+|++|+++++.+++++.+
T Consensus         1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~   74 (273)
T PRK07825          1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG------LVVGGPLDVTDPASFAAFLDAVEA   74 (273)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cceEEEccCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999877666555442      477899999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++|||||...  +..+.+.+.+.+++++|+.+++.+++.++|.+.+     .+.|+||++||..+..       
T Consensus        75 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~-------  142 (273)
T PRK07825         75 DLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVP-----RGRGHVVNVASLAGKI-------  142 (273)
T ss_pred             HcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCCEEEEEcCccccC-------
Confidence            9999999999999764  3556788899999999999999999999999987     5678999999998765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +.++...|+++|+++.+++++++.++.+.|  |++++|+||+++|++....
T Consensus       143 --------~~~~~~~Y~asKaa~~~~~~~l~~el~~~g--i~v~~v~Pg~v~t~~~~~~  191 (273)
T PRK07825        143 --------PVPGMATYCASKHAVVGFTDAARLELRGTG--VHVSVVLPSFVNTELIAGT  191 (273)
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHhhccC--cEEEEEeCCcCcchhhccc
Confidence                    445678999999999999999999999888  9999999999999987654

>PRK06125 short chain dehydrogenase; Provisional

Probab=100.00  E-value=7.9e-33  Score=233.73  Aligned_cols=188  Identities=24%  Similarity=0.335  Sum_probs=165.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++.... +.++.++++|++|+++++.++++   
T Consensus         3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~---   78 (259)
T PRK06125          3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAE---   78 (259)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHH---
Confidence            56789999999999999999999999999999999999888888777776543 45788999999999999988875   


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                       ++++|++|||+|...  ++.+.+.++|.+++++|+.++++++++++|.|.+     .+.|+||++||..+..       
T Consensus        79 -~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~g~iv~iss~~~~~-------  145 (259)
T PRK06125         79 -AGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKA-----RGSGVIVNVIGAAGEN-------  145 (259)
T ss_pred             -hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCcEEEEecCccccC-------
Confidence             478999999999763  4567889999999999999999999999999987     4468999999987654       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                              +...+..|+++|+|+.+++++++.|+.+.|  |+||+|+||+++|++..
T Consensus       146 --------~~~~~~~y~ask~al~~~~~~la~e~~~~g--i~v~~i~PG~v~t~~~~  192 (259)
T PRK06125        146 --------PDADYICGSAGNAALMAFTRALGGKSLDDG--VRVVGVNPGPVATDRML  192 (259)
T ss_pred             --------CCCCchHhHHHHHHHHHHHHHHHHHhCccC--eEEEEEecCccccHHHH
Confidence                    444667899999999999999999999888  99999999999999754

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=100.00  E-value=1e-32  Score=233.36  Aligned_cols=193  Identities=26%  Similarity=0.335  Sum_probs=167.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .++++|++|||||+++||++++++|+++|++|++++|+. +......+++...  +.++.++.+|++|.+++.++++++.
T Consensus         3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~   80 (261)
T PRK08936          3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKA--GGEAIAVKGDVTVESDVVNLIQTAV   80 (261)
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEecCCCHHHHHHHHHHHH
Confidence            357899999999999999999999999999999988854 4455666666554  5678899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|++|||||...  +..+.+.+++++.+++|+.+++++++.+++++.+.    +..|+||++||..+..      
T Consensus        81 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~----~~~g~iv~~sS~~~~~------  150 (261)
T PRK08936         81 KEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEH----DIKGNIINMSSVHEQI------  150 (261)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCcEEEEEccccccC------
Confidence            99999999999999764  34567889999999999999999999999999862    2368999999987654      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|+|+.+++++++.++.++|  |++|+|+||+++|++.+.
T Consensus       151 ---------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~g--i~v~~v~pg~v~t~~~~~  198 (261)
T PRK08936        151 ---------PWPLFVHYAASKGGVKLMTETLAMEYAPKG--IRVNNIGPGAINTPINAE  198 (261)
T ss_pred             ---------CCCCCcccHHHHHHHHHHHHHHHHHHhhcC--eEEEEEEECcCCCCcccc
Confidence                     555778999999999999999999999888  999999999999998653

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=1.4e-33  Score=242.65  Aligned_cols=193  Identities=18%  Similarity=0.182  Sum_probs=149.8

Q ss_pred             cCCCCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHh--------hCCCC-----ceEEEEe
Q 025275           23 QGIDGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVK--------EIPSA-----KVDAMEL   87 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~--------~~~~~-----~~~~~~~   87 (255)
                      +.++++||++||||++  +|||+++|++|+++|++|++.++.+ .++...+....        ...+.     ++..+.+
T Consensus         2 ~~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (299)
T PRK06300          2 LKIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVP-IYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDA   80 (299)
T ss_pred             CCcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccc-hhhhhhhhcccccccccccccccchhhhhhHHHhhh
Confidence            4577899999999996  9999999999999999999987541 11111111000        00000     1111223


Q ss_pred             CCCCH------------------HHHHHHHHHHhcCCCCeeEEEEccCCC----CCCCCCChHHHHHHHHHHHHHHHHHH
Q 025275           88 DVSSL------------------ASVRKFASEYNSQGRPLNILINNAGIM----ASPFMLSKDNIELQFATNHLGHFLLT  145 (255)
Q Consensus        88 Dl~~~------------------~si~~~~~~~~~~~g~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~~~~~~~  145 (255)
                      |+++.                  ++++++++++.+++|++|+||||||..    .++.+.+.++|++++++|+.|+++++
T Consensus        81 d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~  160 (299)
T PRK06300         81 SFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLL  160 (299)
T ss_pred             hcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHH
Confidence            33332                  468999999999999999999999863    35667899999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCcc-chHHhHHHHHHHHHHHHHHHhh-CCCcE
Q 025275          146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG-AYGQSKLANILHAKELAKHLKE-DGVNI  223 (255)
Q Consensus       146 ~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~sKaa~~~l~~~la~~~~~-~~~~i  223 (255)
                      |+++|+|++       .|+||+++|..+..               +.+.+. .|+++|+|+.+|+++++.|+.+ +|  |
T Consensus       161 ~a~~p~m~~-------~G~ii~iss~~~~~---------------~~p~~~~~Y~asKaAl~~lt~~la~el~~~~g--I  216 (299)
T PRK06300        161 SHFGPIMNP-------GGSTISLTYLASMR---------------AVPGYGGGMSSAKAALESDTKVLAWEAGRRWG--I  216 (299)
T ss_pred             HHHHHHhhc-------CCeEEEEeehhhcC---------------cCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC--e
Confidence            999999964       47999999988765               333443 7999999999999999999986 48  9


Q ss_pred             EEEEeeCCceecCcccc
Q 025275          224 TANSLHPGSIVTNLFRY  240 (255)
Q Consensus       224 ~vn~v~PG~v~t~~~~~  240 (255)
                      |||+|+||+++|++.+.
T Consensus       217 rVn~V~PG~v~T~~~~~  233 (299)
T PRK06300        217 RVNTISAGPLASRAGKA  233 (299)
T ss_pred             EEEEEEeCCccChhhhc
Confidence            99999999999998754

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=100.00  E-value=6.4e-33  Score=233.94  Aligned_cols=190  Identities=28%  Similarity=0.371  Sum_probs=166.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +.+.+|++|||||+++||.+++++|+++|++|++++|+.+..++..+++     +.++.++++|++|+++++.+++++.+
T Consensus         2 ~~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   76 (257)
T PRK07067          2 MRLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAAVE   76 (257)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999987766665544     33688999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++|||||...  +..+.+.+++.+++++|+.+++++++++++++.++    +.+++||++||..+..       
T Consensus        77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~~~~iv~~sS~~~~~-------  145 (257)
T PRK07067         77 RFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQ----GRGGKIINMASQAGRR-------  145 (257)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhc----CCCcEEEEeCCHHhCC-------
Confidence            9999999999999763  45567889999999999999999999999999762    2357999999987655       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|+++++++++++.++.++|  |++|+|+||+++|++++.
T Consensus       146 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~i~pg~v~t~~~~~  193 (257)
T PRK07067        146 --------GEALVSHYCATKAAVISYTQSAALALIRHG--INVNAIAPGVVDTPMWDQ  193 (257)
T ss_pred             --------CCCCCchhhhhHHHHHHHHHHHHHHhcccC--eEEEEEeeCcccchhhhh
Confidence                    445678999999999999999999999888  999999999999998654

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.2e-33  Score=238.88  Aligned_cols=212  Identities=56%  Similarity=0.796  Sum_probs=184.5

Q ss_pred             CcccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Q 025275           16 STAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASV   95 (255)
Q Consensus        16 ~~~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si   95 (255)
                      ..........++++++++||||++|||.++|++|+++|++|++++|+.+...+..++++...+..++.++++|+++..+|
T Consensus        22 ~~~~~~~~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV  101 (314)
T KOG1208|consen   22 TTALEVTHGIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSV  101 (314)
T ss_pred             eecceeeccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHH
Confidence            34444556788899999999999999999999999999999999999999999999999866677899999999999999


Q ss_pred             HHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275           96 RKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus        96 ~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      ..+.++..+.++++|++|||||++.++...+.|.++..+.+|..|+|.+++.++|.+++     ...+|||++||..+  
T Consensus       102 ~~fa~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~-----s~~~RIV~vsS~~~--  174 (314)
T KOG1208|consen  102 RKFAEEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKR-----SAPSRIVNVSSILG--  174 (314)
T ss_pred             HHHHHHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhh-----CCCCCEEEEcCccc--
Confidence            99999999999999999999999988778888999999999999999999999999997     33489999999887  


Q ss_pred             ccccCccCCCCCcccC--CCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC-ccc
Q 025275          176 AYSEGIRFDKINDESA--YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN-LFR  239 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~--~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~-~~~  239 (255)
                        ....++..+.....  +.....|+.||-+...+++.|++.+.. |  |.+++++||.+.|+ +.+
T Consensus       175 --~~~~~~~~l~~~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~-~--V~~~~~hPG~v~t~~l~r  236 (314)
T KOG1208|consen  175 --GGKIDLKDLSGEKAKLYSSDAAYALSKLANVLLANELAKRLKK-G--VTTYSVHPGVVKTTGLSR  236 (314)
T ss_pred             --cCccchhhccchhccCccchhHHHHhHHHHHHHHHHHHHHhhc-C--ceEEEECCCcccccceec
Confidence              12223333333333  445557999999999999999999987 6  99999999999999 544

>PRK05717 oxidoreductase; Validated

Probab=100.00  E-value=8.9e-33  Score=232.89  Aligned_cols=188  Identities=28%  Similarity=0.273  Sum_probs=163.0

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +.++++||+++||||+|+||+++|++|+++|++|++++|+.+...+..+++     +.++.++++|+++.++++.+++++
T Consensus         4 ~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~   78 (255)
T PRK05717          4 PNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEV   78 (255)
T ss_pred             CCcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHH
Confidence            567788999999999999999999999999999999999876655544332     446889999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          103 NSQGRPLNILINNAGIMA----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      .+++|++|++|||||...    +..+.+.++|++.+++|+.+++++++++.|+|.+      ..|+||++||..+..   
T Consensus        79 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~------~~g~ii~~sS~~~~~---  149 (255)
T PRK05717         79 LGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRA------HNGAIVNLASTRARQ---  149 (255)
T ss_pred             HHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH------cCcEEEEEcchhhcC---
Confidence            999999999999999763    2345688899999999999999999999999975      257999999988765   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                  +.+....|+++|+++++++++++.++.. +  |++|+|+||+++|++..
T Consensus       150 ------------~~~~~~~Y~~sKaa~~~~~~~la~~~~~-~--i~v~~i~Pg~i~t~~~~  195 (255)
T PRK05717        150 ------------SEPDTEAYAASKGGLLALTHALAISLGP-E--IRVNAVSPGWIDARDPS  195 (255)
T ss_pred             ------------CCCCCcchHHHHHHHHHHHHHHHHHhcC-C--CEEEEEecccCcCCccc
Confidence                        3345678999999999999999999875 3  99999999999998754

>PRK06194 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=235.65  Aligned_cols=199  Identities=28%  Similarity=0.286  Sum_probs=170.7

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.++++.+++++.+.
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~   80 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALER   80 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999988877777777654  457889999999999999999999999


Q ss_pred             CCCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCeEEEecCCccccccccCcc
Q 025275          106 GRPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQK-SSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++++|+||||||....  ..+.+.+++.+.+++|+.|+++++++++|.|.+.... ....|+||++||.++..       
T Consensus        81 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------  153 (287)
T PRK06194         81 FGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL-------  153 (287)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc-------
Confidence            9999999999998643  4567889999999999999999999999999863210 01127999999998776       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +.++...|+++|+++++++++++.++...+..||+++++||++.|++....
T Consensus       154 --------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~~~  204 (287)
T PRK06194        154 --------APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIWQSE  204 (287)
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCcccccc
Confidence                    334667899999999999999999998655569999999999999987643

>PRK07677 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-32  Score=231.47  Aligned_cols=185  Identities=22%  Similarity=0.241  Sum_probs=162.1

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ||++|||||++|||++++++|+++|++|++++|+.+.+++..+.+...  +.++.++++|++|+++++++++++.+.+++
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF--PGQVLTVQMDVRNPEDVQKMVEQIDEKFGR   78 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            589999999999999999999999999999999988777777666554  457899999999999999999999999999


Q ss_pred             eeEEEEccCCC--CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|++|||+|..  .+..+.+.++|.+++++|+.++++++++++++|.+.    ...|+||++||..+..           
T Consensus        79 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~~g~ii~isS~~~~~-----------  143 (252)
T PRK07677         79 IDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEK----GIKGNIINMVATYAWD-----------  143 (252)
T ss_pred             ccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc----CCCEEEEEEcChhhcc-----------
Confidence            99999999864  345578899999999999999999999999998652    2358999999988754           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhh-CCCcEEEEEeeCCceecC
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKE-DGVNITANSLHPGSIVTN  236 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~-~~~~i~vn~v~PG~v~t~  236 (255)
                          +.+....|+++|+++++|+++++.++.+ +|  |++|+|+||+++|+
T Consensus       144 ----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~g--i~v~~v~PG~v~~~  188 (252)
T PRK07677        144 ----AGPGVIHSAAAKAGVLAMTRTLAVEWGRKYG--IRVNAIAPGPIERT  188 (252)
T ss_pred             ----CCCCCcchHHHHHHHHHHHHHHHHHhCcccC--eEEEEEeecccccc
Confidence                3345678999999999999999999975 57  99999999999964

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=2.1e-32  Score=236.86  Aligned_cols=197  Identities=30%  Similarity=0.331  Sum_probs=167.5

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      +..++++|++|||||++|||+++|++|+++|++|++.+++. +..++..+++...  +.++.++++|++|.+++.+++++
T Consensus         6 ~~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~~~~~~~~~~   83 (306)
T PRK07792          6 NTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQRATADELVAT   83 (306)
T ss_pred             CCcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34678899999999999999999999999999999998754 4556667777654  56889999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCCeEEEecCCcccccc
Q 025275          102 YNSQGRPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKS--SREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~--~~~g~ii~vsS~~~~~~~  177 (255)
                      +.+ +|++|+||||||...+  +.+.+.++|.+.+++|+.+++++++++.++|.+.....  ...|+||++||..+..  
T Consensus        84 ~~~-~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--  160 (306)
T PRK07792         84 AVG-LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLV--  160 (306)
T ss_pred             HHH-hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCccccc--
Confidence            998 9999999999998743  45678899999999999999999999999997532111  1247999999988765  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                   +.++...|+++|+++++|++.++.++.++|  |+||+|+|| +.|++...
T Consensus       161 -------------~~~~~~~Y~asKaal~~l~~~la~e~~~~g--I~vn~i~Pg-~~t~~~~~  207 (306)
T PRK07792        161 -------------GPVGQANYGAAKAGITALTLSAARALGRYG--VRANAICPR-ARTAMTAD  207 (306)
T ss_pred             -------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcC--eEEEEECCC-CCCchhhh
Confidence                         344667899999999999999999999988  999999999 48887543

>PRK06484 short chain dehydrogenase; Validated

Probab=100.00  E-value=6e-33  Score=256.39  Aligned_cols=186  Identities=26%  Similarity=0.334  Sum_probs=166.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ...+|++|||||++|||+++|++|+++|++|++++|+.+.++++.+++     +.++..+++|++|+++++++++++.+.
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~  340 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL-----GDEHLSVQADITDEAAVESAFAQIQAR  340 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEccCCCHHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999999987776665544     346778999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          106 GRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       106 ~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      +|++|+||||||...   +..+.+.++|++++++|+.++++++++++|+|.+       .|+||++||.++..       
T Consensus       341 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-------~g~iv~isS~~~~~-------  406 (520)
T PRK06484        341 WGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQ-------GGVIVNLGSIASLL-------  406 (520)
T ss_pred             cCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhcc-------CCEEEEECchhhcC-------
Confidence            999999999999753   4556788999999999999999999999999932       58999999998776       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|+++++|+++++.++.++|  |+||+|+||+|+|++.+.
T Consensus       407 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~g--I~vn~v~PG~v~t~~~~~  454 (520)
T PRK06484        407 --------ALPPRNAYCASKAAVTMLSRSLACEWAPAG--IRVNTVAPGYIETPAVLA  454 (520)
T ss_pred             --------CCCCCchhHHHHHHHHHHHHHHHHHhhhhC--eEEEEEEeCCccCchhhh
Confidence                    455778999999999999999999999988  999999999999998754

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-32  Score=231.12  Aligned_cols=194  Identities=28%  Similarity=0.360  Sum_probs=173.2

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +.+.+++|+++||||+++||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|+++++++..+++++
T Consensus         5 ~~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~   82 (256)
T PRK06124          5 QRFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA--GGAAEALAFDIADEEAVAAAFARI   82 (256)
T ss_pred             cccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999988888877777654  557899999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+.++++|++|||+|...  +..+.+.++|++.+++|+.+++.+++.+++.+.+     ...+++|++||..+..     
T Consensus        83 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~iv~~ss~~~~~-----  152 (256)
T PRK06124         83 DAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKR-----QGYGRIIAITSIAGQV-----  152 (256)
T ss_pred             HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEEeechhcc-----
Confidence            999999999999999763  3556788999999999999999999999999976     4568999999988765     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +.++...|+++|+++.++++.++.++.+.+  |++|+|+||+++|++.+.
T Consensus       153 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~--i~v~~i~pg~v~t~~~~~  200 (256)
T PRK06124        153 ----------ARAGDAVYPAAKQGLTGLMRALAAEFGPHG--ITSNAIAPGYFATETNAA  200 (256)
T ss_pred             ----------CCCCccHhHHHHHHHHHHHHHHHHHHHHhC--cEEEEEEECCccCcchhh
Confidence                      445678999999999999999999998887  999999999999998654

>PRK05993 short chain dehydrogenase; Provisional

Probab=100.00  E-value=6.4e-33  Score=236.75  Aligned_cols=184  Identities=28%  Similarity=0.340  Sum_probs=160.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC-
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG-  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~-  106 (255)
                      .+|++|||||+||||++++++|+++|++|++++|+.+.++++.    ..    .+.++.+|++|+++++.+++++.+.+ 
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~----~~----~~~~~~~Dl~d~~~~~~~~~~~~~~~~   74 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE----AE----GLEAFQLDYAEPESIAALVAQVLELSG   74 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HC----CceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3589999999999999999999999999999999977654332    21    46789999999999999999987665 


Q ss_pred             CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          107 RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       107 g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      +++|++|||||...  +..+.+.+++.+++++|+.|++.+++.++|.+.+     .+.|+||++||..+..         
T Consensus        75 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~-----~~~g~iv~isS~~~~~---------  140 (277)
T PRK05993         75 GRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRK-----QGQGRIVQCSSILGLV---------  140 (277)
T ss_pred             CCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhh-----cCCCEEEEECChhhcC---------
Confidence            68999999998763  3556788999999999999999999999999987     4568999999988765         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                            +.++...|+++|+++++++++++.|+.+.|  |++++|+||+++|++.++.
T Consensus       141 ------~~~~~~~Y~asK~a~~~~~~~l~~el~~~g--i~v~~v~Pg~v~T~~~~~~  189 (277)
T PRK05993        141 ------PMKYRGAYNASKFAIEGLSLTLRMELQGSG--IHVSLIEPGPIETRFRANA  189 (277)
T ss_pred             ------CCCccchHHHHHHHHHHHHHHHHHHhhhhC--CEEEEEecCCccCchhhHH
Confidence                  455678999999999999999999999988  9999999999999987643

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=100.00  E-value=1.5e-32  Score=231.85  Aligned_cols=190  Identities=25%  Similarity=0.320  Sum_probs=163.2

Q ss_pred             EEEEecCCCchHHHHHHHHHH----cCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           31 TAIVTGASSGIGTETARVLAL----RGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~----~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++|||||++|||+++|++|++    .|++|++++|+.+.++++.+++....++.++.++.+|++|+++++++++++.+.+
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~   81 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP   81 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence            689999999999999999997    7999999999999888888888764445678999999999999999999998877


Q ss_pred             CC----eeEEEEccCCCCC----CCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          107 RP----LNILINNAGIMAS----PFM-LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       107 g~----id~lv~~ag~~~~----~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      +.    .|+||||||....    ..+ .+.+++.+.+++|+.+++.+++.++|.+.+.   .+..++||++||..+..  
T Consensus        82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~---~~~~~~iv~isS~~~~~--  156 (256)
T TIGR01500        82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDS---PGLNRTVVNISSLCAIQ--  156 (256)
T ss_pred             ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhc---CCCCCEEEEECCHHhCC--
Confidence            64    3699999997532    122 2468899999999999999999999999752   12357999999988765  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                   +.++...|+++|+|+.+|+++++.++...|  |+||+|+||+++|++.+.
T Consensus       157 -------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~--i~v~~v~PG~v~T~~~~~  204 (256)
T TIGR01500       157 -------------PFKGWALYCAGKAARDMLFQVLALEEKNPN--VRVLNYAPGVLDTDMQQQ  204 (256)
T ss_pred             -------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCC--eEEEEecCCcccchHHHH
Confidence                         455678999999999999999999999888  999999999999998763

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK07024 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-32  Score=231.60  Aligned_cols=189  Identities=26%  Similarity=0.316  Sum_probs=164.9

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++|||||+||||++++++|+++|++|++++|+.+.+++..+++...  + ++.++++|++|++++.++++++.++++.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~   78 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA--A-RVSVYAADVRDADALAAAAADFIAAHGL   78 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC--C-eeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999999999999999987776665554322  2 7899999999999999999999999999


Q ss_pred             eeEEEEccCCCCC--C-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          109 LNILINNAGIMAS--P-FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       109 id~lv~~ag~~~~--~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      +|++|||||....  . .+.+.+++++++++|+.|++++++.++|.|.+     .+.++||++||..+..          
T Consensus        79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~-----~~~~~iv~isS~~~~~----------  143 (257)
T PRK07024         79 PDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRA-----ARRGTLVGIASVAGVR----------  143 (257)
T ss_pred             CCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHh-----cCCCEEEEEechhhcC----------
Confidence            9999999997642  2 22677899999999999999999999999987     4568999999998776          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                           +.+....|+++|+++++++++++.|+.+.|  |++++|+||+++|++.....
T Consensus       144 -----~~~~~~~Y~asK~a~~~~~~~l~~e~~~~g--i~v~~v~Pg~v~t~~~~~~~  193 (257)
T PRK07024        144 -----GLPGAGAYSASKAAAIKYLESLRVELRPAG--VRVVTIAPGYIRTPMTAHNP  193 (257)
T ss_pred             -----CCCCCcchHHHHHHHHHHHHHHHHHhhccC--cEEEEEecCCCcCchhhcCC
Confidence                 445667899999999999999999999888  99999999999999876443

>PRK06523 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-32  Score=231.58  Aligned_cols=184  Identities=24%  Similarity=0.285  Sum_probs=161.0

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +..+++||++|||||++|||++++++|+++|++|++++|+.+..         .  ..++.++++|++|+++++.+++++
T Consensus         3 ~~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~---------~--~~~~~~~~~D~~~~~~~~~~~~~~   71 (260)
T PRK06523          3 FFLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD---------L--PEGVEFVAADLTTAEGCAAVARAV   71 (260)
T ss_pred             cCcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh---------c--CCceeEEecCCCCHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999986431         1  336789999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          103 NSQGRPLNILINNAGIMA----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      .+.++++|++|||||...    +..+.+.++|.+.+++|+.+++.+++++++++++     .+.|+||++||..+..   
T Consensus        72 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~g~ii~isS~~~~~---  143 (260)
T PRK06523         72 LERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIA-----RGSGVIIHVTSIQRRL---  143 (260)
T ss_pred             HHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHh-----cCCcEEEEEecccccC---
Confidence            999999999999999642    2445788999999999999999999999999987     4468999999988654   


Q ss_pred             cCccCCCCCcccCCC-CccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          179 EGIRFDKINDESAYN-SFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~-~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                  +.+ +...|+++|+++++++++++.++.++|  |++|+|+||+++|++..
T Consensus       144 ------------~~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~g--i~v~~i~Pg~v~t~~~~  191 (260)
T PRK06523        144 ------------PLPESTTAYAAAKAALSTYSKSLSKEVAPKG--VRVNTVSPGWIETEAAV  191 (260)
T ss_pred             ------------CCCCCcchhHHHHHHHHHHHHHHHHHHhhcC--cEEEEEecCcccCccHH
Confidence                        222 567899999999999999999999988  99999999999999864

>PRK08628 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2e-32  Score=230.98  Aligned_cols=191  Identities=23%  Similarity=0.343  Sum_probs=166.4

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++|++|||||+||||++++++|+++|++|++++|+.+.. +..+++.+.  +.++.++.+|++++++++.+++++.
T Consensus         2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   78 (258)
T PRK08628          2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRAL--QPRAEFVQVDLTDDAQCRDAVEQTV   78 (258)
T ss_pred             CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999998766 666666554  5578999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          104 SQGRPLNILINNAGIMAS-PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      +.++++|++|||||.... ..+...+++++.+++|+.+++++++.+.+.+++      ..++||++||..+..       
T Consensus        79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~------~~~~iv~~ss~~~~~-------  145 (258)
T PRK08628         79 AKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKA------SRGAIVNISSKTALT-------  145 (258)
T ss_pred             HhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhc------cCcEEEEECCHHhcc-------
Confidence            999999999999997532 233344899999999999999999999999875      247999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|+++++++++++.++...+  |++|+|+||.++|++.+.
T Consensus       146 --------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~--i~v~~v~pg~v~t~~~~~  193 (258)
T PRK08628        146 --------GQGGTSGYAAAKGAQLALTREWAVALAKDG--VRVNAVIPAEVMTPLYEN  193 (258)
T ss_pred             --------CCCCCchhHHHHHHHHHHHHHHHHHHhhcC--eEEEEEecCccCCHHHHH
Confidence                    344678999999999999999999998887  999999999999998653

>PRK07890 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-32  Score=229.87  Aligned_cols=189  Identities=23%  Similarity=0.267  Sum_probs=168.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+.+|+++||||++|||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++.+++++.++
T Consensus         2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (258)
T PRK07890          2 LLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--GRRALAVPTDITDEDQCANLVALALER   79 (258)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999988877777777654  557899999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          106 GRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       106 ~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++++|++|||||...   +..+.+.+++.+.+++|+.+++.+++++.+.+.+      ..++||++||..+..       
T Consensus        80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~------~~~~ii~~sS~~~~~-------  146 (258)
T PRK07890         80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAE------SGGSIVMINSMVLRH-------  146 (258)
T ss_pred             cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh------CCCEEEEEechhhcc-------
Confidence            999999999999753   3446788999999999999999999999999976      246999999987654       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                              +.++...|+++|+++++++++++.++.+.+  |++|+|+||++.|++..
T Consensus       147 --------~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~--i~v~~v~pg~v~~~~~~  193 (258)
T PRK07890        147 --------SQPKYGAYKMAKGALLAASQSLATELGPQG--IRVNSVAPGYIWGDPLK  193 (258)
T ss_pred             --------CCCCcchhHHHHHHHHHHHHHHHHHHhhcC--cEEEEEeCCccCcHHHH
Confidence                    455678999999999999999999999888  99999999999998754

>PRK05855 short chain dehydrogenase; Validated

Probab=100.00  E-value=1.7e-32  Score=255.68  Aligned_cols=195  Identities=30%  Similarity=0.326  Sum_probs=174.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ..++++++|||||+||||++++++|+++|++|++++|+.++++++.+.+...  +.++.++.+|++|++++.++++++.+
T Consensus       311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~  388 (582)
T PRK05855        311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA--GAVAHAYRVDVSDADAMEAFAEWVRA  388 (582)
T ss_pred             ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4457799999999999999999999999999999999998888887777654  55789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .+|++|++|||||+..  +..+.+.+++.+++++|+.|+++++++++|+|.++    +.+|+||++||.++..       
T Consensus       389 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~----~~~g~iv~~sS~~~~~-------  457 (582)
T PRK05855        389 EHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVER----GTGGHIVNVASAAAYA-------  457 (582)
T ss_pred             hcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCcEEEEECChhhcc-------
Confidence            9999999999999864  35667889999999999999999999999999862    2358999999998876       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                              +.++...|++||+++++++++++.++.+.|  |+|++|+||+|+|++.+...
T Consensus       458 --------~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~g--i~v~~v~Pg~v~t~~~~~~~  507 (582)
T PRK05855        458 --------PSRSLPAYATSKAAVLMLSECLRAELAAAG--IGVTAICPGFVDTNIVATTR  507 (582)
T ss_pred             --------CCCCCcHHHHHHHHHHHHHHHHHHHhcccC--cEEEEEEeCCCcccchhccc
Confidence                    445678999999999999999999999988  99999999999999877643

>PRK12743 oxidoreductase; Provisional

Probab=100.00  E-value=3.5e-32  Score=229.50  Aligned_cols=190  Identities=27%  Similarity=0.354  Sum_probs=165.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-ccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++|++|||||++|||++++++|+++|++|+++++ +.+..+...+++...  +.++.++.+|+++.++++.+++++.+.+
T Consensus         1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (256)
T PRK12743          1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSH--GVRAEIRQLDLSDLPEGAQALDKLIQRL   78 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3689999999999999999999999999988865 445566666666554  5678999999999999999999999999


Q ss_pred             CCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          107 RPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       107 g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      +++|++|||+|....  ..+.+.+++.+++++|+.+++.+++++.+++.++    ++.|+||++||..+..         
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~----~~~g~ii~isS~~~~~---------  145 (256)
T PRK12743         79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQ----GQGGRIINITSVHEHT---------  145 (256)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCeEEEEEeeccccC---------
Confidence            999999999997642  4567889999999999999999999999999752    2358999999987554         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                            +.++...|+++|+++.+++++++.++.++|  |++|+|+||+++|++...
T Consensus       146 ------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~--i~v~~v~Pg~~~t~~~~~  193 (256)
T PRK12743        146 ------PLPGASAYTAAKHALGGLTKAMALELVEHG--ILVNAVAPGAIATPMNGM  193 (256)
T ss_pred             ------CCCCcchhHHHHHHHHHHHHHHHHHhhhhC--eEEEEEEeCCccCccccc
Confidence                  555678999999999999999999999888  999999999999998654

>PRK07576 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.7e-32  Score=229.85  Aligned_cols=191  Identities=19%  Similarity=0.237  Sum_probs=167.3

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .++++++|+++||||++|||.+++++|+++|++|++++|+.+.+++..+++...  +.++.++++|++++++++++++++
T Consensus         3 ~~~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~~~   80 (264)
T PRK07576          3 TMFDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA--GPEGLGVSADVRDYAAVEAAFAQI   80 (264)
T ss_pred             ccccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999988777776666654  446789999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+.++++|++|||||...  +..+.+.+++.+.+++|+.+++++++++++.+.+      ++|+||++||..+..     
T Consensus        81 ~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~------~~g~iv~iss~~~~~-----  149 (264)
T PRK07576         81 ADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRR------PGASIIQISAPQAFV-----  149 (264)
T ss_pred             HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh------CCCEEEEECChhhcc-----
Confidence            998999999999998652  3456788899999999999999999999999875      257999999988765     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCcee-cCcc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV-TNLF  238 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~-t~~~  238 (255)
                                +.++...|+++|+++++|+++++.++..+|  |++++|+||+++ |+..
T Consensus       150 ----------~~~~~~~Y~asK~a~~~l~~~la~e~~~~g--i~v~~v~pg~~~~t~~~  196 (264)
T PRK07576        150 ----------PMPMQAHVCAAKAGVDMLTRTLALEWGPEG--IRVNSIVPGPIAGTEGM  196 (264)
T ss_pred             ----------CCCCccHHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEecccccCcHHH
Confidence                      445678999999999999999999999888  999999999997 5543

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.9e-32  Score=214.03  Aligned_cols=184  Identities=30%  Similarity=0.315  Sum_probs=164.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |.++|.++|||||++|||+++|++|.+.|-+||+++|+++.+++.+.++      ..++.+.||+.|.+++.++++.+.+
T Consensus         1 mk~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~------p~~~t~v~Dv~d~~~~~~lvewLkk   74 (245)
T COG3967           1 MKTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAEN------PEIHTEVCDVADRDSRRELVEWLKK   74 (245)
T ss_pred             CcccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcC------cchheeeecccchhhHHHHHHHHHh
Confidence            4678999999999999999999999999999999999999988877663      3578899999999999999999999


Q ss_pred             CCCCeeEEEEccCCCCCC----CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          105 QGRPLNILINNAGIMASP----FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~----~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .|+.++++|||||+....    .+...++..+.+.+|+.+++.+++.++|++.+     ++.+.||++||..+..     
T Consensus        75 ~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~-----q~~a~IInVSSGLafv-----  144 (245)
T COG3967          75 EYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLR-----QPEATIINVSSGLAFV-----  144 (245)
T ss_pred             hCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHh-----CCCceEEEeccccccC-----
Confidence            999999999999998542    23345667788999999999999999999998     5678999999988776     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                                |....+.|.++|||+..++.+|++.++.-+  |.|.-+.|-.|+|+
T Consensus       145 ----------Pm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~--veVIE~~PP~V~t~  188 (245)
T COG3967         145 ----------PMASTPVYCATKAAIHSYTLALREQLKDTS--VEVIELAPPLVDTT  188 (245)
T ss_pred             ----------cccccccchhhHHHHHHHHHHHHHHhhhcc--eEEEEecCCceecC
Confidence                      566778999999999999999999998877  99999999999997

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=5.4e-32  Score=227.10  Aligned_cols=191  Identities=23%  Similarity=0.291  Sum_probs=167.4

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEE-EEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIM-AVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +.+++++||||+|+||++++++|+++|++|++ .+|+.+..++..++++..  +.++.++.+|++|++++..+++++.+.
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEAL--GRKALAVKANVGDVEKIKEMFAQIDEE   79 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999876 578877777777777655  567899999999999999999999999


Q ss_pred             CCCeeEEEEccCCC--CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++++|+||||||..  .+..+.+.+.+...+++|+.+++.+++++++++.+     .+.|+||++||..+..        
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~g~iv~~sS~~~~~--------  146 (250)
T PRK08063         80 FGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEK-----VGGGKIISLSSLGSIR--------  146 (250)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCeEEEEEcchhhcc--------
Confidence            99999999999865  34567788999999999999999999999999986     4568999999977554        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                             +.++...|+++|+++++++++++.++.+.|  |++|+|+||+++|++....
T Consensus       147 -------~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~--i~v~~i~pg~v~t~~~~~~  195 (250)
T PRK08063        147 -------YLENYTTVGVSKAALEALTRYLAVELAPKG--IAVNAVSGGAVDTDALKHF  195 (250)
T ss_pred             -------CCCCccHHHHHHHHHHHHHHHHHHHHhHhC--eEEEeEecCcccCchhhhc
Confidence                   344667899999999999999999998888  9999999999999987654

>PRK06841 short chain dehydrogenase; Provisional

Probab=100.00  E-value=6.1e-32  Score=227.53  Aligned_cols=189  Identities=29%  Similarity=0.361  Sum_probs=164.0

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ++++++|++|||||+++||.+++++|+++|++|++++|+.+. .+..+++    .+.++.++++|++++++++.+++++.
T Consensus        10 ~~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~-~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~   84 (255)
T PRK06841         10 AFDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDV-AEVAAQL----LGGNAKGLVCDVSDSQSVEAAVAAVI   84 (255)
T ss_pred             hcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHHh----hCCceEEEEecCCCHHHHHHHHHHHH
Confidence            356889999999999999999999999999999999998653 2223322    13467799999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|++|||||...  +..+.+.+++.+.+++|+.+++++++.+.++|.+     ...++||++||..+..      
T Consensus        85 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~------  153 (255)
T PRK06841         85 SAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIA-----AGGGKIVNLASQAGVV------  153 (255)
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHh-----cCCceEEEEcchhhcc------
Confidence            99999999999999763  3445778899999999999999999999999986     4468999999988765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                               +.+....|+++|+++++++++++.++.++|  |++|+|+||+++|++.+
T Consensus       154 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~pg~v~t~~~~  200 (255)
T PRK06841        154 ---------ALERHVAYCASKAGVVGMTKVLALEWGPYG--ITVNAISPTVVLTELGK  200 (255)
T ss_pred             ---------CCCCCchHHHHHHHHHHHHHHHHHHHHhhC--eEEEEEEeCcCcCcccc
Confidence                     445678899999999999999999999888  99999999999999865

>PRK07814 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.8e-32  Score=229.09  Aligned_cols=192  Identities=27%  Similarity=0.319  Sum_probs=168.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++++++|||||+||||.+++++|+++|++|++++|+.+.+++..+.+...  +.++.++.+|+++++++.++++++.+
T Consensus         6 ~~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   83 (263)
T PRK07814          6 FRLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA--GRRAHVVAADLAHPEATAGLAGQAVE   83 (263)
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999988777777777554  45788999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++|||||...  +..+.+.+++.+++++|+.+++.+++++.++|.+.    ...|+||++||..+..       
T Consensus        84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~~g~iv~~sS~~~~~-------  152 (263)
T PRK07814         84 AFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEH----SGGGSVINISSTMGRL-------  152 (263)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhh----cCCeEEEEEccccccC-------
Confidence            9999999999999653  34567889999999999999999999999999762    2457999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|+++++++++++.++.+ +  |++|+|+||++.|++...
T Consensus       153 --------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~-~--i~v~~i~Pg~v~t~~~~~  199 (263)
T PRK07814        153 --------AGRGFAAYGTAKAALAHYTRLAALDLCP-R--IRVNAIAPGSILTSALEV  199 (263)
T ss_pred             --------CCCCCchhHHHHHHHHHHHHHHHHHHCC-C--ceEEEEEeCCCcCchhhh
Confidence                    4456788999999999999999999975 4  999999999999997654

>PRK06940 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.4e-32  Score=231.43  Aligned_cols=192  Identities=26%  Similarity=0.296  Sum_probs=155.6

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++||||+ ||||+++|++|+ +|++|++++|+.+++++..+++...  +.++.++++|++|++++.++++++ +++++
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~-~~~g~   76 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATA-QTLGP   76 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHH-HhcCC
Confidence            589999998 699999999996 7999999999988887777777653  457889999999999999999988 56889


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc---c------
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS---E------  179 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~---~------  179 (255)
                      +|++|||||...     ..+++.+++++|+.+++++++++.|.|.+       .|++|++||..+.....   .      
T Consensus        77 id~li~nAG~~~-----~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-------~g~iv~isS~~~~~~~~~~~~~~~~~~  144 (275)
T PRK06940         77 VTGLVHTAGVSP-----SQASPEAILKVDLYGTALVLEEFGKVIAP-------GGAGVVIASQSGHRLPALTAEQERALA  144 (275)
T ss_pred             CCEEEECCCcCC-----chhhHHHHHHHhhHHHHHHHHHHHHHHhh-------CCCEEEEEecccccCcccchhhhcccc
Confidence            999999999742     23678999999999999999999999965       46889999988765320   0      


Q ss_pred             CccCCCCC------cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          180 GIRFDKIN------DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       180 ~~~~~~~~------~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      ..+...+.      ......++..|++||+|+.+++++++.++.+.|  ||||+|+||+++|++..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--Irvn~i~PG~v~T~~~~  208 (275)
T PRK06940        145 TTPTEELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERG--ARINSISPGIISTPLAQ  208 (275)
T ss_pred             ccccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCC--eEEEEeccCcCcCccch
Confidence            00000000      000012467899999999999999999999888  99999999999999864

>PRK06500 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.4e-32  Score=227.40  Aligned_cols=188  Identities=27%  Similarity=0.343  Sum_probs=163.6

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+++|+++||||+|+||++++++|+++|++|++++|+.+.+++..+++     +.++.++++|++|.+++..+++++.+.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (249)
T PRK06500          3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQALAEA   77 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999876665554443     456889999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++++|++|||||...  +..+.+.+++++.+++|+.+++++++++.|++.+       .+++|+++|..+..        
T Consensus        78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-------~~~~i~~~S~~~~~--------  142 (249)
T PRK06500         78 FGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLAN-------PASIVLNGSINAHI--------  142 (249)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc-------CCEEEEEechHhcc--------
Confidence            999999999999753  3456788999999999999999999999999864       46899999977665        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                             +.+....|+.+|+++++++++++.++.+.|  |++++|+||.++|++.+..+
T Consensus       143 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~i~pg~~~t~~~~~~~  192 (249)
T PRK06500        143 -------GMPNSSVYAASKAALLSLAKTLSGELLPRG--IRVNAVSPGPVQTPLYGKLG  192 (249)
T ss_pred             -------CCCCccHHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeeCcCCCHHHHhhc
Confidence                   334668999999999999999999998887  99999999999999876543

>PRK07856 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.6e-32  Score=227.64  Aligned_cols=183  Identities=24%  Similarity=0.274  Sum_probs=160.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++++|++|||||++|||++++++|+++|++|++++|+.+.        ..  .+.++.++++|++++++++.+++++.+
T Consensus         2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~--------~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~   71 (252)
T PRK07856          2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE--------TV--DGRPAEFHAADVRDPDQVAALVDAIVE   71 (252)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh--------hh--cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999998653        11  145688999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++|||||...  +..+.+.+.|.+.+++|+.+++.+++++.+.|.+.    +..|+||++||..+..       
T Consensus        72 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~~g~ii~isS~~~~~-------  140 (252)
T PRK07856         72 RHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQ----PGGGSIVNIGSVSGRR-------  140 (252)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCcEEEEEcccccCC-------
Confidence            9999999999999763  34567889999999999999999999999999752    2358999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                              +.+....|+++|+++++|+++++.++.+.   |++|+|+||+++|++..
T Consensus       141 --------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~---i~v~~i~Pg~v~t~~~~  186 (252)
T PRK07856        141 --------PSPGTAAYGAAKAGLLNLTRSLAVEWAPK---VRVNAVVVGLVRTEQSE  186 (252)
T ss_pred             --------CCCCCchhHHHHHHHHHHHHHHHHHhcCC---eEEEEEEeccccChHHh
Confidence                    45567899999999999999999999764   99999999999999764

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=1.1e-31  Score=226.38  Aligned_cols=191  Identities=27%  Similarity=0.316  Sum_probs=162.5

Q ss_pred             CCCCCcEEEEecCCC--chHHHHHHHHHHcCCeEEEEEec-----------cchHHHHHHHHHhhCCCCceEEEEeCCCC
Q 025275           25 IDGTGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRN-----------MAAGKDVREAIVKEIPSAKVDAMELDVSS   91 (255)
Q Consensus        25 ~~~~~k~vlItG~s~--giG~~ia~~L~~~G~~Vi~~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   91 (255)
                      +.+++|++|||||++  |||.+++++|+++|++|++++|+           .+......+.+...  +.+++++++|+++
T Consensus         1 ~~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~   78 (256)
T PRK12748          1 LPLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESY--GVRCEHMEIDLSQ   78 (256)
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhc--CCeEEEEECCCCC
Confidence            456889999999994  99999999999999999999987           22222233444333  4579999999999


Q ss_pred             HHHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEec
Q 025275           92 LASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVS  169 (255)
Q Consensus        92 ~~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vs  169 (255)
                      ++++..+++++.+.++++|++|||||...  +..+.+.+++++.+++|+.+++++++++.+.+.+     ...++||++|
T Consensus        79 ~~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~~s  153 (256)
T PRK12748         79 PYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDG-----KAGGRIINLT  153 (256)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhh-----cCCeEEEEEC
Confidence            99999999999999999999999999753  4556788899999999999999999999999875     4568999999


Q ss_pred             CCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          170 SEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       170 S~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      |..+..               +.++...|+++|+++++++++++.++...+  |++++|+||+++|++..
T Consensus       154 s~~~~~---------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~--i~v~~i~Pg~~~t~~~~  206 (256)
T PRK12748        154 SGQSLG---------------PMPDELAYAATKGAIEAFTKSLAPELAEKG--ITVNAVNPGPTDTGWIT  206 (256)
T ss_pred             CccccC---------------CCCCchHHHHHHHHHHHHHHHHHHHHHHhC--eEEEEEEeCcccCCCCC
Confidence            987654               444667899999999999999999998887  99999999999998654

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=100.00  E-value=7.6e-32  Score=228.48  Aligned_cols=181  Identities=30%  Similarity=0.362  Sum_probs=159.3

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      -+++++|++|||||++|||++++++|+++|++|++++++.+...           ..++.++++|++|+++++.+++++.
T Consensus         4 ~~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~~~~   72 (266)
T PRK06171          4 WLNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ-----------HENYQFVPTDVSSAEEVNHTVAEII   72 (266)
T ss_pred             cccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc-----------cCceEEEEccCCCHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999876431           2367889999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCCC-----------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          104 SQGRPLNILINNAGIMAS-----------PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~-----------~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      +.++++|++|||||...+           ..+.+.++|++++++|+.+++++++++.++|.+     .+.|+||++||..
T Consensus        73 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~g~iv~isS~~  147 (266)
T PRK06171         73 EKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVK-----QHDGVIVNMSSEA  147 (266)
T ss_pred             HHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHh-----cCCcEEEEEcccc
Confidence            999999999999997532           134688999999999999999999999999986     4568999999988


Q ss_pred             cccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCcee-cCc
Q 025275          173 HRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV-TNL  237 (255)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~-t~~  237 (255)
                      +..               +.++...|+++|+++++|+++++.++.+.|  |++|+|+||+++ |++
T Consensus       148 ~~~---------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~g--i~v~~v~pG~~~~t~~  196 (266)
T PRK06171        148 GLE---------------GSEGQSCYAATKAALNSFTRSWAKELGKHN--IRVVGVAPGILEATGL  196 (266)
T ss_pred             ccC---------------CCCCCchhHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeccccccCCC
Confidence            765               344678999999999999999999999888  999999999997 555

>PRK08226 short chain dehydrogenase; Provisional

Probab=100.00  E-value=9.2e-32  Score=227.54  Aligned_cols=191  Identities=29%  Similarity=0.364  Sum_probs=164.5

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+++|+++||||++|||++++++|+++|++|++++|+.+ ..+..+++...  +.++.++++|++++++++.+++++.+.
T Consensus         3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~   79 (263)
T PRK08226          3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGR--GHRCTAVVADVRDPASVAAAIKRAKEK   79 (263)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999864 44455555443  457889999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++++|++|||||...  +..+.+.+++++.+++|+.+++++++.+++++.+     ...++||++||..+...       
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~iv~isS~~~~~~-------  147 (263)
T PRK08226         80 EGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIA-----RKDGRIVMMSSVTGDMV-------  147 (263)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-----cCCcEEEEECcHHhccc-------
Confidence            999999999999753  3456778899999999999999999999999876     34679999999775321       


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                             +.+++..|+++|+++++++++++.++.+++  |+||+|+||+++|++.+.
T Consensus       148 -------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~--i~v~~i~pg~v~t~~~~~  195 (263)
T PRK08226        148 -------ADPGETAYALTKAAIVGLTKSLAVEYAQSG--IRVNAICPGYVRTPMAES  195 (263)
T ss_pred             -------CCCCcchHHHHHHHHHHHHHHHHHHhcccC--cEEEEEecCcccCHHHHh
Confidence                   334567899999999999999999998887  999999999999998764

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=9.4e-32  Score=225.90  Aligned_cols=189  Identities=21%  Similarity=0.270  Sum_probs=158.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec-cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN-MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      |.+++|++|||||+||||++++++|+++|++|+++.++ .+..+...+++     +.++.++++|++|++++..+++++.
T Consensus         1 ~~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~   75 (253)
T PRK08642          1 MQISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL-----GDRAIALQADVTDREQVQAMFATAT   75 (253)
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            34678999999999999999999999999999887654 33333332222     3478899999999999999999998


Q ss_pred             cCCCC-eeEEEEccCCC--------CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          104 SQGRP-LNILINNAGIM--------ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       104 ~~~g~-id~lv~~ag~~--------~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      +.++. +|++|||||..        .+..+.+.+++.+.+++|+.+++++++++++++.+     .+.|+||++||..+.
T Consensus        76 ~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~g~iv~iss~~~~  150 (253)
T PRK08642         76 EHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMRE-----QGFGRIINIGTNLFQ  150 (253)
T ss_pred             HHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHh-----cCCeEEEEECCcccc
Confidence            88887 99999999863        12456788999999999999999999999999976     346899999997643


Q ss_pred             cccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          175 FAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      .               +..+...|+++|+++++++++++.++.++|  |+||+|+||+++|+....
T Consensus       151 ~---------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~--i~v~~i~pG~v~t~~~~~  199 (253)
T PRK08642        151 N---------------PVVPYHDYTTAKAALLGLTRNLAAELGPYG--ITVNMVSGGLLRTTDASA  199 (253)
T ss_pred             C---------------CCCCccchHHHHHHHHHHHHHHHHHhCccC--eEEEEEeecccCCchhhc
Confidence            2               344567899999999999999999999988  999999999999986543

>PRK06484 short chain dehydrogenase; Validated

Probab=100.00  E-value=4.9e-32  Score=250.31  Aligned_cols=189  Identities=27%  Similarity=0.366  Sum_probs=166.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ..++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++++|++|+++++.+++++.++
T Consensus         2 ~~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (520)
T PRK06484          2 KAQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL-----GPDHHALAMDVSDEAQIREGFEQLHRE   76 (520)
T ss_pred             CCCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEeccCCHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999988776665554     446788999999999999999999999


Q ss_pred             CCCeeEEEEccCCC----CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          106 GRPLNILINNAGIM----ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       106 ~g~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      ++++|+||||||+.    .+..+.+.++|.+++++|+.+++.++++++|+|.++    +.+++||++||..+..      
T Consensus        77 ~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~g~~iv~isS~~~~~------  146 (520)
T PRK06484         77 FGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQ----GHGAAIVNVASGAGLV------  146 (520)
T ss_pred             hCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCCeEEEECCcccCC------
Confidence            99999999999974    234578889999999999999999999999999762    2234999999988776      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.+....|+++|+++.+|+++++.|+...+  |++|+|+||+++|++...
T Consensus       147 ---------~~~~~~~Y~asKaal~~l~~~la~e~~~~~--i~v~~i~Pg~v~t~~~~~  194 (520)
T PRK06484        147 ---------ALPKRTAYSASKAAVISLTRSLACEWAAKG--IRVNAVLPGYVRTQMVAE  194 (520)
T ss_pred             ---------CCCCCchHHHHHHHHHHHHHHHHHHhhhhC--eEEEEEccCCcCchhhhh
Confidence                     445678999999999999999999999888  999999999999998754

>PRK07904 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-31  Score=226.25  Aligned_cols=191  Identities=18%  Similarity=0.170  Sum_probs=162.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccch-HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAA-GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++++||||++|||+++|++|+++| ++|++++|+.+. +++..+++... +..+++++++|++|+++++++++++.+ 
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~-~~~~v~~~~~D~~~~~~~~~~~~~~~~-   84 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA-GASSVEVIDFDALDTDSHPKVIDAAFA-   84 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc-CCCceEEEEecCCChHHHHHHHHHHHh-
Confidence            56899999999999999999999995 899999999886 78888887664 234789999999999999999999886 


Q ss_pred             CCCeeEEEEccCCCCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~--~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++++|++|||+|...+...  .+.+...+.+++|+.+++.+++.++|.|.+     .+.++||++||..+..        
T Consensus        85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~-----~~~~~iv~isS~~g~~--------  151 (253)
T PRK07904         85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRA-----QGFGQIIAMSSVAGER--------  151 (253)
T ss_pred             cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHh-----cCCceEEEEechhhcC--------
Confidence            4899999999998643211  234455678999999999999999999987     4568999999988654        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                             +.++...|++||+++.+|+++++.|+...+  |++++|+||+++|++.....
T Consensus       152 -------~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~--i~v~~v~Pg~v~t~~~~~~~  201 (253)
T PRK07904        152 -------VRRSNFVYGSTKAGLDGFYLGLGEALREYG--VRVLVVRPGQVRTRMSAHAK  201 (253)
T ss_pred             -------CCCCCcchHHHHHHHHHHHHHHHHHHhhcC--CEEEEEeeCceecchhccCC
Confidence                   334557899999999999999999999888  99999999999999887543

>PRK07774 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-31  Score=225.04  Aligned_cols=190  Identities=30%  Similarity=0.311  Sum_probs=166.4

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +.+++|++|||||+|+||++++++|+++|++|++++|+.+......+++...  +.++.++.+|++|.++++.+++++.+
T Consensus         2 ~~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (250)
T PRK07774          2 GRFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--GGTAIAVQVDVSDPDSAKAMADATVS   79 (250)
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999987776766666543  34678899999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC-----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          105 QGRPLNILINNAGIMA-----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~-----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      .++++|+||||||...     +..+.+.+.+.+.+++|+.+++++++++++++.+     .+.++||++||..++.    
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~----  150 (250)
T PRK07774         80 AFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAK-----RGGGAIVNQSSTAAWL----  150 (250)
T ss_pred             HhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHH-----hCCcEEEEEecccccC----
Confidence            9999999999999753     2345678899999999999999999999999986     4568999999987543    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                    +...|+++|+++++++++++.++...|  |+++.++||.++|++....
T Consensus       151 --------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~--i~v~~v~pg~~~t~~~~~~  196 (250)
T PRK07774        151 --------------YSNFYGLAKVGLNGLTQQLARELGGMN--IRVNAIAPGPIDTEATRTV  196 (250)
T ss_pred             --------------CccccHHHHHHHHHHHHHHHHHhCccC--eEEEEEecCcccCcccccc
Confidence                          456899999999999999999998887  9999999999999987643

>PRK09186 flagellin modification protein A; Provisional

Probab=100.00  E-value=1.3e-31  Score=225.52  Aligned_cols=199  Identities=27%  Similarity=0.291  Sum_probs=166.5

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++....++..+.++.+|++|++++..+++++.+.+
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   81 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY   81 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999999998888888887654444467788999999999999999999999


Q ss_pred             CCeeEEEEccCCC-----CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          107 RPLNILINNAGIM-----ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       107 g~id~lv~~ag~~-----~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +++|++||||+..     .+..+.+.+.+.+.+++|+.+++.++++++++|.+     .+.++||++||..+......  
T Consensus        82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~iv~~sS~~~~~~~~~--  154 (256)
T PRK09186         82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKK-----QGGGNLVNISSIYGVVAPKF--  154 (256)
T ss_pred             CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----cCCceEEEEechhhhccccc--
Confidence            9999999999754     23456788999999999999999999999999986     45679999999887643210  


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                         .+.+..+......|+++|+++++++++++.++.+.+  |++|.|+||.+.++.
T Consensus       155 ---~~~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~--i~v~~i~Pg~~~~~~  205 (256)
T PRK09186        155 ---EIYEGTSMTSPVEYAAIKAGIIHLTKYLAKYFKDSN--IRVNCVSPGGILDNQ  205 (256)
T ss_pred             ---hhccccccCCcchhHHHHHHHHHHHHHHHHHhCcCC--eEEEEEecccccCCC
Confidence               011111222334799999999999999999998888  999999999998764

>PRK06182 short chain dehydrogenase; Validated

Probab=100.00  E-value=7.5e-32  Score=229.52  Aligned_cols=182  Identities=32%  Similarity=0.370  Sum_probs=159.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++|+++||||+||||++++++|+++|++|++++|+.+++++..    .    ..+.++.+|++|+++++.+++++.+.++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~   73 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----S----LGVHPLSLDVTDEASIKAAVDTIIAEEG   73 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----h----CCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999999999976654332    1    2478899999999999999999999999


Q ss_pred             CeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          108 PLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       108 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      ++|++|||||...  +..+.+.+++++.+++|+.+++.+++.++|.+++     .+.|+||++||..+..          
T Consensus        74 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~-----~~~g~iv~isS~~~~~----------  138 (273)
T PRK06182         74 RIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRA-----QRSGRIINISSMGGKI----------  138 (273)
T ss_pred             CCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHh-----cCCCEEEEEcchhhcC----------
Confidence            9999999999763  4566788999999999999999999999999987     4568999999987654          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                           +.+....|+++|+++++++++++.|+.+.|  |++++|+||+++|++..
T Consensus       139 -----~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~g--i~v~~v~Pg~v~t~~~~  185 (273)
T PRK06182        139 -----YTPLGAWYHATKFALEGFSDALRLEVAPFG--IDVVVIEPGGIKTEWGD  185 (273)
T ss_pred             -----CCCCccHhHHHHHHHHHHHHHHHHHhcccC--CEEEEEecCCcccccch
Confidence                 333456799999999999999999998888  99999999999999753

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-31  Score=226.10  Aligned_cols=189  Identities=23%  Similarity=0.301  Sum_probs=165.1

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++|||||+++||.+++++|+++|++|++++|+.+.+++..+++....+..++.++.+|+++++++..+++++.+.+++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999998888888777766543357899999999999999999999999999


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCeEEEecCCccccccccCccCCC
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSR-EGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      +|++|||||...  +..+.+.++|.+.+++|+.+++++++++++.+.+     .+ .++||++||..+..          
T Consensus        82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~-----~~~~~~iv~~ss~~~~~----------  146 (259)
T PRK12384         82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIR-----DGIQGRIIQINSKSGKV----------  146 (259)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHh-----CCCCcEEEEecCccccc----------
Confidence            999999999763  3456788999999999999999999999999986     23 57999999987654          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCce-ecCccc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSI-VTNLFR  239 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v-~t~~~~  239 (255)
                           +......|+++|+++++++++++.++.++|  |++|+|+||.+ .|+++.
T Consensus       147 -----~~~~~~~Y~~sKaa~~~l~~~la~e~~~~g--i~v~~v~pg~~~~~~~~~  194 (259)
T PRK12384        147 -----GSKHNSGYSAAKFGGVGLTQSLALDLAEYG--ITVHSLMLGNLLKSPMFQ  194 (259)
T ss_pred             -----CCCCCchhHHHHHHHHHHHHHHHHHHHHcC--cEEEEEecCCcccchhhh
Confidence                 333567899999999999999999999888  99999999975 666543

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=100.00  E-value=1.3e-31  Score=232.75  Aligned_cols=206  Identities=37%  Similarity=0.571  Sum_probs=166.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .+|++|||||++|||++++++|+++| ++|++++|+.+.+++..+++...  +.++.++.+|++|.++++.+++++.+.+
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   79 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMP--KDSYTIMHLDLGSLDSVRQFVQQFRESG   79 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999 99999999988877777766432  4578899999999999999999998888


Q ss_pred             CCeeEEEEccCCCCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc----
Q 025275          107 RPLNILINNAGIMAS---PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE----  179 (255)
Q Consensus       107 g~id~lv~~ag~~~~---~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~----  179 (255)
                      +++|++|||||+..+   ....+.++|.+++++|+.+++++++.++|.|++..   ...|+||++||..+......    
T Consensus        80 ~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~---~~~g~IV~vsS~~~~~~~~~~~~~  156 (314)
T TIGR01289        80 RPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSP---NKDKRLIIVGSITGNTNTLAGNVP  156 (314)
T ss_pred             CCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCC---CCCCeEEEEecCccccccCCCcCC
Confidence            999999999997543   23467899999999999999999999999998621   12479999999987542110    


Q ss_pred             -CccCCCC-------------CcccCCCCccchHHhHHHHHHHHHHHHHHHh-hCCCcEEEEEeeCCce-ecCcccc
Q 025275          180 -GIRFDKI-------------NDESAYNSFGAYGQSKLANILHAKELAKHLK-EDGVNITANSLHPGSI-VTNLFRY  240 (255)
Q Consensus       180 -~~~~~~~-------------~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~-~~~~~i~vn~v~PG~v-~t~~~~~  240 (255)
                       ..++..+             ....++.+...|++||+++..+++.++.++. +.|  |+|++|+||.| +|++.++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~g--i~v~~v~PG~v~~T~l~~~  231 (314)
T TIGR01289       157 PKANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETG--ITFASLYPGCIADTGLFRE  231 (314)
T ss_pred             CcccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCC--eEEEEecCCcccCCccccc
Confidence             0001110             1123445667899999999999999999985 356  99999999999 6998754

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK05650 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-31  Score=227.64  Aligned_cols=188  Identities=23%  Similarity=0.296  Sum_probs=169.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |+++||||+||||++++++|+++|++|++++|+.+.+++..+++.+.  +.++.++++|++|++++..+++++.+.++++
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   78 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA--GGDGFYQRCDVRDYSQLTALAQACEEKWGGI   78 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            47999999999999999999999999999999998888888887765  5578899999999999999999999999999


Q ss_pred             eEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          110 NILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       110 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      |+||||||...  ...+.+.+++++++++|+.+++.+++.++|.+.+     ...++||++||..+..            
T Consensus        79 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~iv~vsS~~~~~------------  141 (270)
T PRK05650         79 DVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKR-----QKSGRIVNIASMAGLM------------  141 (270)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHh-----CCCCEEEEECChhhcC------------
Confidence            99999999764  3566788999999999999999999999999986     3468999999998765            


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                         +.++...|+++|+++.+++++++.++...|  |++++|+||+++|++....
T Consensus       142 ---~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~g--i~v~~v~Pg~v~t~~~~~~  190 (270)
T PRK05650        142 ---QGPAMSSYNVAKAGVVALSETLLVELADDE--IGVHVVCPSFFQTNLLDSF  190 (270)
T ss_pred             ---CCCCchHHHHHHHHHHHHHHHHHHHhcccC--cEEEEEecCccccCccccc
Confidence               445678999999999999999999998888  9999999999999987653

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=2.7e-31  Score=221.63  Aligned_cols=194  Identities=28%  Similarity=0.352  Sum_probs=170.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ..+++++++||||+|+||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|+++++++..+++++.+
T Consensus         3 ~~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (239)
T PRK07666          3 QSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKN   80 (239)
T ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999988877777777543  55789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      +++++|++|||+|...  ...+.+.+++.+.+++|+.+++++++++.+++.+     ...+++|++||..+..       
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~~ss~~~~~-------  148 (239)
T PRK07666         81 ELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIE-----RQSGDIINISSTAGQK-------  148 (239)
T ss_pred             HcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----CCCcEEEEEcchhhcc-------
Confidence            9999999999999753  3446788999999999999999999999999976     4567999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                              +..+...|+.+|+++.++++.++.++.+.|  |++++|+||.+.|++....+
T Consensus       149 --------~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~g--i~v~~v~pg~v~t~~~~~~~  198 (239)
T PRK07666        149 --------GAAVTSAYSASKFGVLGLTESLMQEVRKHN--IRVTALTPSTVATDMAVDLG  198 (239)
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHhhccC--cEEEEEecCcccCcchhhcc
Confidence                    444667899999999999999999998888  99999999999999866443

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=100.00  E-value=1.4e-31  Score=224.21  Aligned_cols=191  Identities=24%  Similarity=0.257  Sum_probs=163.9

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEE-eccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAV-RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++|+++||||+++||++++++|+++|++|++.. ++.....+..+++...  +.++..+.+|++|.+++.++++++.+.
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKAL--GFDFIASEGNVGDWDSTKAAFDKVKAE   78 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999988754 4444555555555443  557888999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++++|++|||||...  +..+.+.+++++++++|+.+++.+++++++.+.+     ...++||++||..+..        
T Consensus        79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~iv~isS~~~~~--------  145 (246)
T PRK12938         79 VGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVE-----RGWGRIINISSVNGQK--------  145 (246)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCeEEEEEechhccC--------
Confidence            999999999999764  3456788999999999999999999999999976     3457999999987654        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                             +.++...|+++|+++++++++++.++...|  |++|+|+||+++|++.+..
T Consensus       146 -------~~~~~~~y~~sK~a~~~~~~~l~~~~~~~g--i~v~~i~pg~~~t~~~~~~  194 (246)
T PRK12938        146 -------GQFGQTNYSTAKAGIHGFTMSLAQEVATKG--VTVNTVSPGYIGTDMVKAI  194 (246)
T ss_pred             -------CCCCChhHHHHHHHHHHHHHHHHHHhhhhC--eEEEEEEecccCCchhhhc
Confidence                   444678899999999999999999999888  9999999999999987643

>PRK08251 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-31  Score=222.95  Aligned_cols=194  Identities=22%  Similarity=0.255  Sum_probs=169.5

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|+++||||++|||++++++|+++|++|++++|+.+++++..+.+....++.++.++++|++|++++.++++++.+++++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999999888888777766555678999999999999999999999999999


Q ss_pred             eeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|++|||||+...  ..+.+.+.+.+.+++|+.+++.+++.+.+.+.+     .+.++||++||..+..+.+        
T Consensus        82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~iv~~sS~~~~~~~~--------  148 (248)
T PRK08251         82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFRE-----QGSGHLVLISSVSAVRGLP--------  148 (248)
T ss_pred             CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCeEEEEeccccccCCC--------
Confidence            9999999997643  344567888999999999999999999999986     4567999999988765211        


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                            .+...|+.+|++++++++.++.++...+  |++++|+||+++|++.+..+.
T Consensus       149 ------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~--i~v~~v~pg~v~t~~~~~~~~  197 (248)
T PRK08251        149 ------GVKAAYAASKAGVASLGEGLRAELAKTP--IKVSTIEPGYIRSEMNAKAKS  197 (248)
T ss_pred             ------CCcccHHHHHHHHHHHHHHHHHHhcccC--cEEEEEecCcCcchhhhcccc
Confidence                  1357899999999999999999998777  999999999999998876543

>PRK06483 dihydromonapterin reductase; Provisional

Probab=100.00  E-value=1.4e-31  Score=223.08  Aligned_cols=181  Identities=22%  Similarity=0.235  Sum_probs=154.3

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++|||||++|||++++++|+++|++|++++|+.+..   .+.+...    .+.++.+|++|+++++.+++++.+.+++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~   74 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPA---IDGLRQA----GAQCIQADFSTNAGIMAFIDELKQHTDG   74 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhH---HHHHHHc----CCEEEEcCCCCHHHHHHHHHHHHhhCCC
Confidence            58999999999999999999999999999999987643   2333322    2678999999999999999999999999


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|++|||||...  .+.+.+.++|.+++++|+.+++.+++.+++.|.+..   ...|+||++||..+..           
T Consensus        75 id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~---~~~g~iv~~ss~~~~~-----------  140 (236)
T PRK06483         75 LRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHG---HAASDIIHITDYVVEK-----------  140 (236)
T ss_pred             ccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCC---CCCceEEEEcchhhcc-----------
Confidence            999999999753  245567899999999999999999999999998621   1257999999987554           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                          +.+++..|+++|+++++|+++++.++.+ +  ||+|+|+||++.|+.
T Consensus       141 ----~~~~~~~Y~asKaal~~l~~~~a~e~~~-~--irvn~v~Pg~~~~~~  184 (236)
T PRK06483        141 ----GSDKHIAYAASKAALDNMTLSFAAKLAP-E--VKVNSIAPALILFNE  184 (236)
T ss_pred             ----CCCCCccHHHHHHHHHHHHHHHHHHHCC-C--cEEEEEccCceecCC
Confidence                4456789999999999999999999986 4  999999999998764

>PRK08703 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-31  Score=222.30  Aligned_cols=193  Identities=25%  Similarity=0.298  Sum_probs=166.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC--HHHHHHHHHHHh
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS--LASVRKFASEYN  103 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~si~~~~~~~~  103 (255)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+.+++..+++.+. ++..+.++++|+++  .+++..+++++.
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~i~   81 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEA-GHPEPFAIRFDLMSAEEKEFEQFAATIA   81 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHc-CCCCcceEEeeecccchHHHHHHHHHHH
Confidence            467899999999999999999999999999999999998888777777553 23467889999986  568899999998


Q ss_pred             cCC-CCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          104 SQG-RPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       104 ~~~-g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.+ +.+|++|||||..   .+..+.+.+++.+.+++|+.+++++++++++.+.+     .+.+++|++||..+..    
T Consensus        82 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-----~~~~~iv~~ss~~~~~----  152 (239)
T PRK08703         82 EATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQ-----SPDASVIFVGESHGET----  152 (239)
T ss_pred             HHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHh-----CCCCEEEEEecccccc----
Confidence            887 7899999999975   24567788999999999999999999999999976     4568999999977654    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                 +.+++..|+++|++++.++++++.++.+.+ +|+|++|.||+|+|++...
T Consensus       153 -----------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~-~i~v~~v~pG~v~t~~~~~  201 (239)
T PRK08703        153 -----------PKAYWGGFGASKAALNYLCKVAADEWERFG-NLRANVLVPGPINSPQRIK  201 (239)
T ss_pred             -----------CCCCccchHHhHHHHHHHHHHHHHHhccCC-CeEEEEEecCcccCccccc
Confidence                       445667899999999999999999998751 3999999999999998654

>PRK12939 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-31  Score=222.51  Aligned_cols=193  Identities=32%  Similarity=0.409  Sum_probs=170.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ..+++|+++||||+|+||++++++|+++|++|++++|+.+++++..+++++.  +.++.++.+|++|++++.++++++.+
T Consensus         3 ~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   80 (250)
T PRK12939          3 SNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA--GGRAHAIAADLADPASVQRFFDAAAA   80 (250)
T ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4467899999999999999999999999999999999988888877777654  45789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++|||+|...  +..+.+.+++.+.+++|+.+++.+++.+.+++.+     .+.|++|++||..+..       
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~-------  148 (250)
T PRK12939         81 ALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRD-----SGRGRIVNLASDTALW-------  148 (250)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCeEEEEECchhhcc-------
Confidence            9999999999999764  3456788899999999999999999999999976     4578999999987665       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +.+....|+++|++++++++.++.++...+  |++++|+||+++|++.+..
T Consensus       149 --------~~~~~~~y~~sK~~~~~~~~~l~~~~~~~~--i~v~~v~pg~v~t~~~~~~  197 (250)
T PRK12939        149 --------GAPKLGAYVASKGAVIGMTRSLARELGGRG--ITVNAIAPGLTATEATAYV  197 (250)
T ss_pred             --------CCCCcchHHHHHHHHHHHHHHHHHHHhhhC--EEEEEEEECCCCCcccccc
Confidence                    344567899999999999999999998887  9999999999999987654

>PRK06180 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-31  Score=228.16  Aligned_cols=185  Identities=28%  Similarity=0.348  Sum_probs=162.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++|++|||||+||||++++++|+++|++|++++|+.+++....+.    . +.++.++.+|++|++++..+++++.+.++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~----~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   77 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL----H-PDRALARLLDVTDFDAIDAVVADAEATFG   77 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh----c-CCCeeEEEccCCCHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999999987765443322    1 34688999999999999999999999999


Q ss_pred             CeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          108 PLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       108 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      ++|++|||||...  +..+.+.+++.+++++|+.|+++++++++|++++     .+.++||++||..+..          
T Consensus        78 ~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-----~~~~~iv~iSS~~~~~----------  142 (277)
T PRK06180         78 PIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRA-----RRRGHIVNITSMGGLI----------  142 (277)
T ss_pred             CCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----cCCCEEEEEecccccC----------
Confidence            9999999999763  4556788999999999999999999999999986     4567999999988765          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                           +.++...|+++|+++++++++++.++...|  +++++|+||.++|++..
T Consensus       143 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~i~Pg~v~t~~~~  189 (277)
T PRK06180        143 -----TMPGIGYYCGSKFALEGISESLAKEVAPFG--IHVTAVEPGSFRTDWAG  189 (277)
T ss_pred             -----CCCCcchhHHHHHHHHHHHHHHHHHhhhhC--cEEEEEecCCcccCccc
Confidence                 445678999999999999999999998888  99999999999998744

>PRK07454 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2e-31  Score=222.68  Aligned_cols=189  Identities=29%  Similarity=0.325  Sum_probs=167.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++|+++||||+|+||++++++|+++|++|++++|+.+..++..+.+.+.  +.++.++.+|++|++++..+++++.++++
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST--GVKAAAYSIDLSNPEAIAPGIAELLEQFG   82 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4589999999999999999999999999999999988777777766553  45788999999999999999999999999


Q ss_pred             CeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          108 PLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       108 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      ++|++|||+|...  +..+.+.+++++.+++|+.+++++++.+++++.+     .+.++||++||..+..          
T Consensus        83 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~iv~isS~~~~~----------  147 (241)
T PRK07454         83 CPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRA-----RGGGLIINVSSIAARN----------  147 (241)
T ss_pred             CCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHh-----cCCcEEEEEccHHhCc----------
Confidence            9999999999764  3445678899999999999999999999999987     4568999999988654          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                           +.+++..|+.+|++++.++++++.++.+.|  |++++|.||+++|++...
T Consensus       148 -----~~~~~~~Y~~sK~~~~~~~~~~a~e~~~~g--i~v~~i~pg~i~t~~~~~  195 (241)
T PRK07454        148 -----AFPQWGAYCVSKAALAAFTKCLAEEERSHG--IRVCTITLGAVNTPLWDT  195 (241)
T ss_pred             -----CCCCccHHHHHHHHHHHHHHHHHHHhhhhC--CEEEEEecCcccCCcccc
Confidence                 445678899999999999999999998888  999999999999998653

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=100.00  E-value=1.8e-32  Score=229.29  Aligned_cols=179  Identities=36%  Similarity=0.453  Sum_probs=160.2

Q ss_pred             cCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC-CCeeEE
Q 025275           36 GAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG-RPLNIL  112 (255)
Q Consensus        36 G~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~-g~id~l  112 (255)
                      |++  +|||++||++|+++|++|++++|+.+++++..+++.+..+ .+  ++++|++++++++.+++++.+.+ |++|++
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~-~~--~~~~D~~~~~~v~~~~~~~~~~~~g~iD~l   77 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYG-AE--VIQCDLSDEESVEALFDEAVERFGGRIDIL   77 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT-SE--EEESCTTSHHHHHHHHHHHHHHHCSSESEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC-Cc--eEeecCcchHHHHHHHHHHHhhcCCCeEEE
Confidence            566  9999999999999999999999999988888888877654 23  59999999999999999999999 999999


Q ss_pred             EEccCCCCC------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          113 INNAGIMAS------PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       113 v~~ag~~~~------~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      |||+|...+      +.+.+.++|.+.+++|+.+++.++|++.|+|++       .|+||++||..+..           
T Consensus        78 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~gsii~iss~~~~~-----------  139 (241)
T PF13561_consen   78 VNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKK-------GGSIINISSIAAQR-----------  139 (241)
T ss_dssp             EEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-------EEEEEEEEEGGGTS-----------
T ss_pred             EecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CCCcccccchhhcc-----------
Confidence            999987642      345778999999999999999999999998876       58999999988665           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhh-CCCcEEEEEeeCCceecCccccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKE-DGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~-~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                          +.+++..|+++|+|+++|+|++|.|+++ +|  ||||+|+||+++|++.+..
T Consensus       140 ----~~~~~~~y~~sKaal~~l~r~lA~el~~~~g--IrVN~V~pG~i~t~~~~~~  189 (241)
T PF13561_consen  140 ----PMPGYSAYSASKAALEGLTRSLAKELAPKKG--IRVNAVSPGPIETPMTERI  189 (241)
T ss_dssp             ----BSTTTHHHHHHHHHHHHHHHHHHHHHGGHGT--EEEEEEEESSBSSHHHHHH
T ss_pred             ----cCccchhhHHHHHHHHHHHHHHHHHhccccC--eeeeeecccceeccchhcc
Confidence                5557779999999999999999999999 98  9999999999999986654

...

>PRK06138 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.4e-31  Score=223.31  Aligned_cols=191  Identities=31%  Similarity=0.376  Sum_probs=169.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |++++|+++||||+|+||.+++++|+++|++|++++|+.+..++..+++.   .+.++.++++|++|+++++++++++.+
T Consensus         1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i~~   77 (252)
T PRK06138          1 MRLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFVAA   77 (252)
T ss_pred             CCCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999887777666665   255789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      +++++|++|||+|...  +..+.+.+++.+.+++|+.+++.+++.+++.+++     .+.++||++||..+..       
T Consensus        78 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~ii~~sS~~~~~-------  145 (252)
T PRK06138         78 RWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQR-----QGGGSIVNTASQLALA-------  145 (252)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHh-----cCCeEEEEECChhhcc-------
Confidence            9999999999999764  3455788999999999999999999999999987     4567999999987765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+.+|++++.++++++.++..+|  |++++|+||.+.|++.++
T Consensus       146 --------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~--i~v~~v~pg~~~t~~~~~  193 (252)
T PRK06138        146 --------GGRGRAAYVASKGAIASLTRAMALDHATDG--IRVNAVAPGTIDTPYFRR  193 (252)
T ss_pred             --------CCCCccHHHHHHHHHHHHHHHHHHHHHhcC--eEEEEEEECCccCcchhh
Confidence                    344668899999999999999999998888  999999999999998654

>PRK09072 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-31  Score=224.71  Aligned_cols=189  Identities=25%  Similarity=0.292  Sum_probs=166.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |+++++++|||||+|+||.+++++|+++|++|++++|+.+.+++..+++ ..  +.++.++++|++|+++++.+++.+.+
T Consensus         1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~   77 (263)
T PRK09072          1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARARE   77 (263)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHh
Confidence            4567899999999999999999999999999999999988877776666 22  45789999999999999999998876


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                       ++++|++|||||...  +..+.+.+++.+.+++|+.|++++++.+++++.+     ++.++||++||..+..       
T Consensus        78 -~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~-------  144 (263)
T PRK09072         78 -MGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRA-----QPSAMVVNVGSTFGSI-------  144 (263)
T ss_pred             -cCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-----cCCCEEEEecChhhCc-------
Confidence             789999999999763  3456788999999999999999999999999987     4568999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                              +.++...|+.+|+++.+++++++.++...+  |++++|+||+++|++..
T Consensus       145 --------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~--i~v~~v~Pg~~~t~~~~  191 (263)
T PRK09072        145 --------GYPGYASYCASKFALRGFSEALRRELADTG--VRVLYLAPRATRTAMNS  191 (263)
T ss_pred             --------CCCCccHHHHHHHHHHHHHHHHHHHhcccC--cEEEEEecCcccccchh
Confidence                    444667899999999999999999998888  99999999999999754

>PRK06701 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-31  Score=227.66  Aligned_cols=190  Identities=26%  Similarity=0.313  Sum_probs=164.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ..+++|++|||||+++||.+++++|+++|++|++++|+.+. ++...+.+...  +.++.++.+|+++.++++.+++++.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~  119 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETV  119 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999998643 44444444433  4578899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          104 SQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      +.++++|++|||||...   +..+.+.++|.+.+++|+.+++++++++++.+.+       .++||++||..+..     
T Consensus       120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~-------~g~iV~isS~~~~~-----  187 (290)
T PRK06701        120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQ-------GSAIINTGSITGYE-----  187 (290)
T ss_pred             HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhh-------CCeEEEEecccccC-----
Confidence            99999999999999753   3456788999999999999999999999999864       47999999988765     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +.+....|+++|+++++++++++.++.+.|  |++++|+||+++|++...
T Consensus       188 ----------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~g--Irv~~i~pG~v~T~~~~~  235 (290)
T PRK06701        188 ----------GNETLIDYSATKGAIHAFTRSLAQSLVQKG--IRVNAVAPGPIWTPLIPS  235 (290)
T ss_pred             ----------CCCCcchhHHHHHHHHHHHHHHHHHhhhcC--eEEEEEecCCCCCccccc
Confidence                      334567899999999999999999999888  999999999999997653

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=100.00  E-value=4.9e-31  Score=229.77  Aligned_cols=210  Identities=36%  Similarity=0.549  Sum_probs=167.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++.+|++|||||++|||.+++++|+++|++|++++|+.+++++..+++...  +.++.++++|++|.++++.+++++.+
T Consensus         2 ~~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~   79 (322)
T PRK07453          2 SQDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRA   79 (322)
T ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999988887777776432  45788999999999999999999888


Q ss_pred             CCCCeeEEEEccCCCCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc----
Q 025275          105 QGRPLNILINNAGIMAS---PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY----  177 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~---~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~----  177 (255)
                      .++++|+||||||+..+   ..+.+.++++..+++|+.|+++++++++|.|++..   ...++||++||.......    
T Consensus        80 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~---~~~~riV~vsS~~~~~~~~~~~  156 (322)
T PRK07453         80 LGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSP---APDPRLVILGTVTANPKELGGK  156 (322)
T ss_pred             hCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC---CCCceEEEEcccccCccccCCc
Confidence            88899999999997643   23568899999999999999999999999998621   113699999998754311    


Q ss_pred             ---ccCccCCCC-------------CcccCCCCccchHHhHHHHHHHHHHHHHHHhh-CCCcEEEEEeeCCce-ecCccc
Q 025275          178 ---SEGIRFDKI-------------NDESAYNSFGAYGQSKLANILHAKELAKHLKE-DGVNITANSLHPGSI-VTNLFR  239 (255)
Q Consensus       178 ---~~~~~~~~~-------------~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~-~~~~i~vn~v~PG~v-~t~~~~  239 (255)
                         +...++..+             .+..++.+...|+.||.+...+++.++.++.. .|  |++++++||.| .|++.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~g--i~v~~v~PG~v~~t~~~~  234 (322)
T PRK07453        157 IPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTG--ITFSSLYPGCVADTPLFR  234 (322)
T ss_pred             cCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCC--eEEEEecCCcccCCcccc
Confidence               000011100             01123456678999999999999999999853 56  99999999999 588766


Q ss_pred             cc
Q 025275          240 YN  241 (255)
Q Consensus       240 ~~  241 (255)
                      +.
T Consensus       235 ~~  236 (322)
T PRK07453        235 NT  236 (322)
T ss_pred             cC
Confidence            53

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=3.3e-31  Score=222.21  Aligned_cols=192  Identities=33%  Similarity=0.369  Sum_probs=169.4

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |+++++++|||||+|+||.+++++|+++|++|++++|+.+..++..+.+..   +.++.++.+|++|+++++.+++++.+
T Consensus         1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~   77 (251)
T PRK07231          1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALE   77 (251)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            357889999999999999999999999999999999998877776666543   45689999999999999999999988


Q ss_pred             CCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +++++|++|||+|...   +..+.+.+.+.+.+++|+.+++.+++.+++++.+     ...++||++||..+..      
T Consensus        78 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~------  146 (251)
T PRK07231         78 RFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRG-----EGGGAIVNVASTAGLR------  146 (251)
T ss_pred             HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-----cCCcEEEEEcChhhcC------
Confidence            8999999999999753   3446788999999999999999999999999986     4568999999988765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++...|+.+|+++..+++.++.++.+.+  |++++|+||+++|++....
T Consensus       147 ---------~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~--i~v~~i~pg~~~t~~~~~~  195 (251)
T PRK07231        147 ---------PRPGLGWYNASKGAVITLTKALAAELGPDK--IRVNAVAPVVVETGLLEAF  195 (251)
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHhhhhC--eEEEEEEECccCCCcchhh
Confidence                     455678899999999999999999998877  9999999999999986643

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=100.00  E-value=3.3e-31  Score=221.45  Aligned_cols=190  Identities=27%  Similarity=0.351  Sum_probs=165.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++++++++||||+|+||++++++|+++|+.|++.+|+.+++++..+.+     +.++.++.+|+++.++++.+++++.+
T Consensus         2 ~~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   76 (245)
T PRK12936          2 FDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKAEA   76 (245)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999998877766554433     34688999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++|||||...  +..+.+.+++.+++++|+.+++++++++.+.+.+     .+.++||++||..+..       
T Consensus        77 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~-------  144 (245)
T PRK12936         77 DLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMR-----RRYGRIINITSVVGVT-------  144 (245)
T ss_pred             HcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHH-----hCCCEEEEECCHHhCc-------
Confidence            9999999999999764  3456678899999999999999999999998876     3467999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +.+....|+.+|+++.++++.++.++...+  +++++|+||+++|++....
T Consensus       145 --------~~~~~~~Y~~sk~a~~~~~~~la~~~~~~~--i~v~~i~pg~~~t~~~~~~  193 (245)
T PRK12936        145 --------GNPGQANYCASKAGMIGFSKSLAQEIATRN--VTVNCVAPGFIESAMTGKL  193 (245)
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHhhHhC--eEEEEEEECcCcCchhccc
Confidence                    334567899999999999999999998888  9999999999999987553

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=100.00  E-value=3.8e-31  Score=223.34  Aligned_cols=190  Identities=29%  Similarity=0.294  Sum_probs=167.6

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++|++|||||+|+||++++++|+++|++|++++|+++..++..+++.+.  +.++.++++|++|.++++.+++++.+.
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA--GGKAIGVAMDVTNEDAVNAGIDKVAER   81 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc--CceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999998888888887654  557889999999999999999999988


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTM-KKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++++|++|||||...  +..+.+.+++.+.+++|+.+++.+++.+++.+ +.     .+.++||++||..+..       
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-----~~~~~iv~~ss~~~~~-------  149 (262)
T PRK13394         82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKD-----DRGGVVIYMGSVHSHE-------  149 (262)
T ss_pred             cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-----cCCcEEEEEcchhhcC-------
Confidence            999999999999763  23456788999999999999999999999999 54     3468999999977554       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                              +.+....|+++|++++++++.++.++...+  |++|+|+||.++|++..
T Consensus       150 --------~~~~~~~y~~sk~a~~~~~~~la~~~~~~~--i~v~~v~pg~v~~~~~~  196 (262)
T PRK13394        150 --------ASPLKSAYVTAKHGLLGLARVLAKEGAKHN--VRSHVVCPGFVRTPLVD  196 (262)
T ss_pred             --------CCCCCcccHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeeCcccchhhh
Confidence                    334567899999999999999999998877  99999999999999754

>PRK06949 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.2e-31  Score=222.13  Aligned_cols=198  Identities=29%  Similarity=0.449  Sum_probs=170.2

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ..++++|+++||||+|+||++++++|+++|++|++++|+.+++++..+++...  +.++.++.+|+++++++..+++++.
T Consensus         4 ~~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   81 (258)
T PRK06949          4 SINLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE--GGAAHVVSLDVTDYQSIKAAVAHAE   81 (258)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999988887777776554  4468899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCCCeEEEecCCccccccc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQ---KSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~---~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      +.++++|++|||+|...  +..+.+.+++..++++|+.+++.+++++++.+..+..   .....+++|++||..+..   
T Consensus        82 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~---  158 (258)
T PRK06949         82 TEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR---  158 (258)
T ss_pred             HhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC---
Confidence            99999999999999753  3445678899999999999999999999999976321   111257999999987654   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                  +.+....|+++|++++.++++++.++.+.+  |++|+|+||+++|++.+.
T Consensus       159 ------------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~--i~v~~v~pG~v~t~~~~~  206 (258)
T PRK06949        159 ------------VLPQIGLYCMSKAAVVHMTRAMALEWGRHG--INVNAICPGYIDTEINHH  206 (258)
T ss_pred             ------------CCCCccHHHHHHHHHHHHHHHHHHHHHhcC--eEEEEEeeCCCcCCcchh
Confidence                        344567899999999999999999998888  999999999999998653

>PRK08263 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.5e-31  Score=225.68  Aligned_cols=185  Identities=26%  Similarity=0.309  Sum_probs=163.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++|++|||||+|+||++++++|+++|++|++++|+.+.+.+..+.+     +.++.++++|++|+++++.+++++.+.++
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   76 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAVEHFG   76 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999987665544432     34678899999999999999999999899


Q ss_pred             CeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          108 PLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       108 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      ++|++|||||...  +..+.+.+++.+.+++|+.+++++++.++|.+++     .+.++||++||..+..          
T Consensus        77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~vsS~~~~~----------  141 (275)
T PRK08263         77 RLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLRE-----QRSGHIIQISSIGGIS----------  141 (275)
T ss_pred             CCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCCEEEEEcChhhcC----------
Confidence            9999999999764  3556788999999999999999999999999987     4567999999988765          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                           +.+....|+++|++++++++.++.++...|  |+++.|+||+++|++..
T Consensus       142 -----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~g--i~v~~v~Pg~~~t~~~~  188 (275)
T PRK08263        142 -----AFPMSGIYHASKWALEGMSEALAQEVAEFG--IKVTLVEPGGYSTDWAG  188 (275)
T ss_pred             -----CCCCccHHHHHHHHHHHHHHHHHHHhhhhC--cEEEEEecCCccCCccc
Confidence                 444667899999999999999999999888  99999999999999874

>PRK12937 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.5e-31  Score=221.39  Aligned_cols=189  Identities=30%  Similarity=0.427  Sum_probs=164.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc-hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      |.+++|+++||||+|+||++++++|+++|++|+++.|+.+ ..++..+++.+.  +.++.++++|+++.++++++++++.
T Consensus         1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~   78 (245)
T PRK12937          1 MTLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAA--GGRAIAVQADVADAAAVTRLFDAAE   78 (245)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999999999999988877654 345566666554  5679999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|++|||||...  +..+.+.+++.+++++|+.+++.+++++++.+.+       .++||++||..+..      
T Consensus        79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-------~~~iv~~ss~~~~~------  145 (245)
T PRK12937         79 TAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQ-------GGRIINLSTSVIAL------  145 (245)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhcc-------CcEEEEEeeccccC------
Confidence            99999999999999763  3456778899999999999999999999999854       57999999977654      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                               +.+++..|+++|++++.++++++.++...+  |++++|+||+++|++..
T Consensus       146 ---------~~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~--i~v~~i~pg~~~t~~~~  192 (245)
T PRK12937        146 ---------PLPGYGPYAASKAAVEGLVHVLANELRGRG--ITVNAVAPGPVATELFF  192 (245)
T ss_pred             ---------CCCCCchhHHHHHHHHHHHHHHHHHhhhcC--eEEEEEEeCCccCchhc
Confidence                     445678899999999999999999999888  99999999999999853

>PRK07832 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.5e-31  Score=224.69  Aligned_cols=190  Identities=26%  Similarity=0.318  Sum_probs=165.2

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |+++||||++|||++++++|+++|++|++++|+.+.+++..+++... +...+.++.+|++|+++++.+++++.+.++++
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARAL-GGTVPEHRALDISDYDAVAAFAADIHAAHGSM   79 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            57999999999999999999999999999999988777777777654 23345668999999999999999999999999


Q ss_pred             eEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          110 NILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       110 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      |++|||+|...  +..+.+.+++.+.+++|+.+++.++++++|.|.+.    +..++||++||..+..            
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~----~~~g~ii~isS~~~~~------------  143 (272)
T PRK07832         80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAA----GRGGHLVNVSSAAGLV------------  143 (272)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC----CCCcEEEEEccccccC------------
Confidence            99999999753  35568899999999999999999999999999752    2357999999987654            


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                         +.+....|+++|+++.+++++++.++.+.+  |++++|+||.++|++++..
T Consensus       144 ---~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~--i~v~~v~Pg~v~t~~~~~~  192 (272)
T PRK07832        144 ---ALPWHAAYSASKFGLRGLSEVLRFDLARHG--IGVSVVVPGAVKTPLVNTV  192 (272)
T ss_pred             ---CCCCCcchHHHHHHHHHHHHHHHHHhhhcC--cEEEEEecCcccCcchhcc
Confidence               444667899999999999999999998888  9999999999999987653

>PRK05875 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.8e-31  Score=224.24  Aligned_cols=194  Identities=25%  Similarity=0.211  Sum_probs=168.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +.+++|++|||||+|+||.+++++|+++|++|++++|+.+......+++.......++.++.+|++|+++++.+++++.+
T Consensus         3 ~~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   82 (276)
T PRK05875          3 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA   82 (276)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            34778999999999999999999999999999999999877777776665432235788999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      .++++|++|||||...   +..+.+.+++.+++++|+.+++.+++++.+.+.+     .+.++||++||..+..      
T Consensus        83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~g~iv~~sS~~~~~------  151 (276)
T PRK05875         83 WHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVR-----GGGGSFVGISSIAASN------  151 (276)
T ss_pred             HcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEEechhhcC------
Confidence            9999999999999653   3455788899999999999999999999999976     4467999999988654      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|++++.++++++.++...+  |++++|+||.++|++...
T Consensus       152 ---------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~--i~v~~i~Pg~v~t~~~~~  199 (276)
T PRK05875        152 ---------THRWFGAYGVTKSAVDHLMKLAADELGPSW--VRVNSIRPGLIRTDLVAP  199 (276)
T ss_pred             ---------CCCCCcchHHHHHHHHHHHHHHHHHhcccC--eEEEEEecCccCCccccc
Confidence                     334567899999999999999999999888  999999999999998754

>TIGR02415 23BDH acetoin reductases

Probab=100.00  E-value=4.5e-31  Score=222.02  Aligned_cols=189  Identities=26%  Similarity=0.334  Sum_probs=167.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |+++||||+|+||.+++++|++.|++|++++|+.+.+++..+++...  +.++.++.+|++|++++.++++++.+.++++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i   78 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQA--GGKAVAYKLDVSDKDQVFSAIDQAAEKFGGF   78 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999999999999987777777777654  5578999999999999999999999999999


Q ss_pred             eEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          110 NILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       110 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      |+||||+|...  +..+.+.+++++.+++|+.+++.+++.+++.+++.    +..++||++||..+..            
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~~~~iv~~sS~~~~~------------  142 (254)
T TIGR02415        79 DVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQ----GHGGKIINAASIAGHE------------  142 (254)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhC----CCCeEEEEecchhhcC------------
Confidence            99999999763  34567889999999999999999999999999862    2247999999988765            


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                         +.+.+..|+.+|+++++++++++.++.+.+  |++++|+||+++|++++..
T Consensus       143 ---~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~--i~v~~v~Pg~i~t~~~~~~  191 (254)
T TIGR02415       143 ---GNPILSAYSSTKFAVRGLTQTAAQELAPKG--ITVNAYCPGIVKTPMWEEI  191 (254)
T ss_pred             ---CCCCCcchHHHHHHHHHHHHHHHHHhcccC--eEEEEEecCcccChhhhhh
Confidence               445678999999999999999999999887  9999999999999986543

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK12744 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.1e-31  Score=223.03  Aligned_cols=189  Identities=22%  Similarity=0.297  Sum_probs=157.0

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc----chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM----AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      +..+++|++|||||++|||.++|++|+++|++|++++++.    +..++..+++...  +.++.++++|+++++++++++
T Consensus         3 ~~~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~   80 (257)
T PRK12744          3 DHSLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAA--GAKAVAFQADLTTAAAVEKLF   80 (257)
T ss_pred             CCCCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHh--CCcEEEEecCcCCHHHHHHHH
Confidence            3457889999999999999999999999999977776543    2344444555443  457889999999999999999


Q ss_pred             HHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEe-cCCccccc
Q 025275          100 SEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNV-SSEAHRFA  176 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~v-sS~~~~~~  176 (255)
                      +++.+.++++|++|||||...  +..+.+.+++.+++++|+.+++.+++++.+.+.+       .++++++ ||..+.  
T Consensus        81 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-------~~~iv~~~ss~~~~--  151 (257)
T PRK12744         81 DDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLND-------NGKIVTLVTSLLGA--  151 (257)
T ss_pred             HHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhcc-------CCCEEEEecchhcc--
Confidence            999999999999999999753  3456788999999999999999999999999864       4677776 454432  


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                    +.+.+..|+++|+++++|+++++.++.+.|  |+||+|+||++.|++..
T Consensus       152 --------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~--i~v~~v~pg~v~t~~~~  198 (257)
T PRK12744        152 --------------FTPFYSAYAGSKAPVEHFTRAASKEFGARG--ISVTAVGPGPMDTPFFY  198 (257)
T ss_pred             --------------cCCCcccchhhHHHHHHHHHHHHHHhCcCc--eEEEEEecCccccchhc
Confidence                          223567899999999999999999999887  99999999999999764

>PRK06179 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.2e-31  Score=225.15  Aligned_cols=182  Identities=31%  Similarity=0.353  Sum_probs=161.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++++++||||+||||++++++|+++|++|++++|+.++.+.          ..+++++++|++|+++++.+++++.+.+|
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g   72 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEVIARAG   72 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence            46899999999999999999999999999999998654321          23578999999999999999999999999


Q ss_pred             CeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          108 PLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       108 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      ++|+||||||...  +..+.+.+++.+++++|+.|++++++++++++++     .+.++||++||..+..          
T Consensus        73 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-----~~~~~iv~isS~~~~~----------  137 (270)
T PRK06179         73 RIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRA-----QGSGRIINISSVLGFL----------  137 (270)
T ss_pred             CCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCceEEEECCccccC----------
Confidence            9999999999763  3456788999999999999999999999999987     4578999999988765          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                           +.+....|+++|++++++++.++.++.+.|  |++++|+||+++|++....
T Consensus       138 -----~~~~~~~Y~~sK~a~~~~~~~l~~el~~~g--i~v~~v~pg~~~t~~~~~~  186 (270)
T PRK06179        138 -----PAPYMALYAASKHAVEGYSESLDHEVRQFG--IRVSLVEPAYTKTNFDANA  186 (270)
T ss_pred             -----CCCCccHHHHHHHHHHHHHHHHHHHHhhhC--cEEEEEeCCCccccccccc
Confidence                 444667899999999999999999999888  9999999999999987654

>PRK07069 short chain dehydrogenase; Validated

Probab=100.00  E-value=4.9e-31  Score=221.29  Aligned_cols=189  Identities=28%  Similarity=0.281  Sum_probs=164.0

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEec-cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRN-MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++||||++|||++++++|+++|++|++++|+ .+.+++..+++........+..+++|++|+++++.+++++.+.++++|
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   81 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLS   81 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCcc
Confidence            8999999999999999999999999999998 666666666665443233456789999999999999999999999999


Q ss_pred             EEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          111 ILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       111 ~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      ++|||||...  +..+.+.+++.+++++|+.+++.+++.+++.+.+     .+.++||++||..+..             
T Consensus        82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~ii~~ss~~~~~-------------  143 (251)
T PRK07069         82 VLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRA-----SQPASIVNISSVAAFK-------------  143 (251)
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhh-----cCCcEEEEecChhhcc-------------
Confidence            9999999763  3456788899999999999999999999999986     4568999999988765             


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                        +.++...|+++|+++.+++++++.++.+++.+|+++.|+||+++|++...
T Consensus       144 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~  193 (251)
T PRK07069        144 --AEPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDP  193 (251)
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhH
Confidence              44467789999999999999999999887777999999999999998753

>PRK06914 short chain dehydrogenase; Provisional

Probab=100.00  E-value=7.1e-31  Score=224.13  Aligned_cols=190  Identities=29%  Similarity=0.373  Sum_probs=166.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++|++|||||+|+||++++++|+++|++|++++|+.+...+..+++.....+.++.++.+|++|+++++. ++++.+.++
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~   80 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIG   80 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcC
Confidence            5789999999999999999999999999999999988777776666544334578999999999999999 999988899


Q ss_pred             CeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          108 PLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       108 ~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      ++|++|||||...+  ..+.+.+++.+.+++|+.+++.+++.+++++++     .+.++||++||..+..          
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~vsS~~~~~----------  145 (280)
T PRK06914         81 RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRK-----QKSGKIINISSISGRV----------  145 (280)
T ss_pred             CeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCCEEEEECcccccC----------
Confidence            99999999997643  445678899999999999999999999999986     4567999999987765          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                           +.++...|+++|+++++++++++.++.++|  |++++|+||+++|++++.
T Consensus       146 -----~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~--i~v~~v~pg~~~t~~~~~  193 (280)
T PRK06914        146 -----GFPGLSPYVSSKYALEGFSESLRLELKPFG--IDVALIEPGSYNTNIWEV  193 (280)
T ss_pred             -----CCCCCchhHHhHHHHHHHHHHHHHHhhhhC--CEEEEEecCCcccchhhc
Confidence                 444677899999999999999999998888  999999999999997653

>PRK08267 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.6e-31  Score=222.47  Aligned_cols=185  Identities=23%  Similarity=0.260  Sum_probs=163.3

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC-CCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ-GRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~-~g~  108 (255)
                      |++|||||+||||++++++|+++|++|++++|+.+.+++..+.+.    +.++.++++|++|++++.++++++.+. +++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~   77 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR   77 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            789999999999999999999999999999999877666655442    457899999999999999999988776 789


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|+||||||...  +..+.+.+++++++++|+.+++++++++.++|+.     .+.++||++||..+..           
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~-----------  141 (260)
T PRK08267         78 LDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKA-----TPGARVINTSSASAIY-----------  141 (260)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----CCCCEEEEeCchhhCc-----------
Confidence            999999999764  3456788999999999999999999999999986     4568999999988766           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                          +.+....|+.+|+++++++++++.++.+.+  |++++|.||+++|++.+.
T Consensus       142 ----~~~~~~~Y~~sKaa~~~~~~~l~~~~~~~~--i~v~~i~pg~~~t~~~~~  189 (260)
T PRK08267        142 ----GQPGLAVYSATKFAVRGLTEALDLEWRRHG--IRVADVMPLFVDTAMLDG  189 (260)
T ss_pred             ----CCCCchhhHHHHHHHHHHHHHHHHHhcccC--cEEEEEecCCcCCccccc
Confidence                344667899999999999999999999888  999999999999998764

>PLN00015 protochlorophyllide reductase

Probab=99.98  E-value=5.3e-31  Score=228.28  Aligned_cols=199  Identities=39%  Similarity=0.596  Sum_probs=160.6

Q ss_pred             EEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeE
Q 025275           33 IVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNI  111 (255)
Q Consensus        33 lItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~  111 (255)
                      |||||++|||++++++|+++| ++|++++|+.+.+.+..+++...  +.++.++++|++|.++++++++++.+.++++|+
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~   78 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMP--KDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDV   78 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCE
Confidence            699999999999999999999 99999999988777777666432  457889999999999999999999988899999


Q ss_pred             EEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CCeEEEecCCcccccc-----ccCc
Q 025275          112 LINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSR--EGRIVNVSSEAHRFAY-----SEGI  181 (255)
Q Consensus       112 lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~--~g~ii~vsS~~~~~~~-----~~~~  181 (255)
                      ||||||+..   +..+.+.++|++++++|+.|++.+++.++|.|.+     .+  +|+||++||..+....     +...
T Consensus        79 lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~-----~~~~~g~IV~vsS~~~~~~~~~~~~~~~~  153 (308)
T PLN00015         79 LVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKK-----SDYPSKRLIIVGSITGNTNTLAGNVPPKA  153 (308)
T ss_pred             EEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----CCCCCCEEEEEeccccccccccccCCCcc
Confidence            999999753   2346788999999999999999999999999986     33  5899999998865310     0000


Q ss_pred             cCCCC---------------CcccCCCCccchHHhHHHHHHHHHHHHHHHhh-CCCcEEEEEeeCCce-ecCcccc
Q 025275          182 RFDKI---------------NDESAYNSFGAYGQSKLANILHAKELAKHLKE-DGVNITANSLHPGSI-VTNLFRY  240 (255)
Q Consensus       182 ~~~~~---------------~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~-~~~~i~vn~v~PG~v-~t~~~~~  240 (255)
                      ++..+               .....+.+...|++||+|...+++.++.++.+ +|  |+||+|+||+| .|++.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~g--i~v~~v~PG~v~~t~~~~~  227 (308)
T PLN00015        154 NLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETG--ITFASLYPGCIATTGLFRE  227 (308)
T ss_pred             chhhhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCC--eEEEEecCCcccCcccccc
Confidence            00000               00123345678999999988889999999965 56  99999999999 7888654

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.98  E-value=9.7e-31  Score=219.74  Aligned_cols=184  Identities=32%  Similarity=0.423  Sum_probs=162.3

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++|++|||||+++||.+++++|+++|++|++++|+.         +...  +.++.++++|++++++++++++++.
T Consensus         3 ~~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   71 (252)
T PRK08220          3 AMDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LTQE--DYPFATFVLDVSDAAAVAQVCQRLL   71 (252)
T ss_pred             ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hhhc--CCceEEEEecCCCHHHHHHHHHHHH
Confidence            3678899999999999999999999999999999999885         1111  4578899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      ++++++|++|||+|...  +..+.+.+++.+.+++|+.+++.+++++.+++.+     ...|+||++||..+..      
T Consensus        72 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~g~iv~~ss~~~~~------  140 (252)
T PRK08220         72 AETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRR-----QRSGAIVTVGSNAAHV------  140 (252)
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----CCCCEEEEECCchhcc------
Confidence            99999999999999763  3456788999999999999999999999999986     4568999999987654      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|+++++++++++.++.+.|  |++|+|+||+++|++...
T Consensus       141 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~--i~v~~i~pg~v~t~~~~~  188 (252)
T PRK08220        141 ---------PRIGMAAYGASKAALTSLAKCVGLELAPYG--VRCNVVSPGSTDTDMQRT  188 (252)
T ss_pred             ---------CCCCCchhHHHHHHHHHHHHHHHHHhhHhC--eEEEEEecCcCcchhhhh
Confidence                     445678899999999999999999999888  999999999999997653

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.98  E-value=1.1e-30  Score=220.57  Aligned_cols=195  Identities=28%  Similarity=0.319  Sum_probs=167.4

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|++|||||+|+||.+++++|+++|++|++++|+.++++...+.+...  +.++.++++|++|+++++++++++.+
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~~~i~~~~~~~~~   85 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADEADIERLAEETLE   85 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999988777777776654  45788999999999999999999999


Q ss_pred             CCCCeeEEEEccCCC--CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTHLLLDT-MKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      .++++|++|||||..  .+..+.+.+.|.+.+++|+.+++++++++.++ +.+     ++.+++|++||..+..+.+.  
T Consensus        86 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~-----~~~~~~v~~sS~~~~~~~~~--  158 (259)
T PRK08213         86 RFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIP-----RGYGRIINVASVAGLGGNPP--  158 (259)
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHh-----cCCeEEEEECChhhccCCCc--
Confidence            889999999999965  23455778899999999999999999999998 654     34579999999876653221  


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                               ...+...|+++|+++++++++++.++.+.|  |++|.|+||+++|++..
T Consensus       159 ---------~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~g--i~v~~v~Pg~~~t~~~~  205 (259)
T PRK08213        159 ---------EVMDTIAYNTSKGAVINFTRALAAEWGPHG--IRVNAIAPGFFPTKMTR  205 (259)
T ss_pred             ---------cccCcchHHHHHHHHHHHHHHHHHHhcccC--EEEEEEecCcCCCcchh
Confidence                     112457899999999999999999999888  99999999999998754

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.98  E-value=1.3e-30  Score=218.52  Aligned_cols=191  Identities=28%  Similarity=0.351  Sum_probs=164.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-ccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .+++|+++||||+|+||.+++++|+++|++|+++.+ +.+..++..+.+...  +.++.++++|++|++++.++++++.+
T Consensus         3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (247)
T PRK12935          3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKE--GHDVYAVQADVSKVEDANRLVEEAVN   80 (247)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999999999999987654 445555555666543  45789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++|||||....  ..+.+.+.+.+.+++|+.+++++++++++.+.+     ...+++|++||..+..       
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~-------  148 (247)
T PRK12935         81 HFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITE-----AEEGRIISISSIIGQA-------  148 (247)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCcEEEEEcchhhcC-------
Confidence            99999999999997643  345677899999999999999999999999976     4567999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|+++++++++++.++.+.+  |+++.|+||.++|++...
T Consensus       149 --------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~--i~v~~v~pg~v~t~~~~~  196 (247)
T PRK12935        149 --------GGFGQTNYSAAKAGMLGFTKSLALELAKTN--VTVNAICPGFIDTEMVAE  196 (247)
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHHHHcC--cEEEEEEeCCCcChhhhh
Confidence                    334667999999999999999999998877  999999999999987654

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.98  E-value=1e-30  Score=222.69  Aligned_cols=182  Identities=26%  Similarity=0.340  Sum_probs=159.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |++|||||+||||++++++|+++|++|++++|+.+.++..    ...    .+.++.+|++++++++++++++.+.++++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~----~~~----~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   73 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEAL----AAA----GFTAVQLDVNDGAALARLAEELEAEHGGL   73 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHC----CCeEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            7899999999999999999999999999999987654432    221    36789999999999999999999999999


Q ss_pred             eEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          110 NILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       110 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      |++|||||...  +..+.+.+++.+.+++|+.+++.++++++|.+.+      ..|+||++||..+..            
T Consensus        74 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~------~~g~iv~isS~~~~~------------  135 (274)
T PRK05693         74 DVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRR------SRGLVVNIGSVSGVL------------  135 (274)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh------cCCEEEEECCccccC------------
Confidence            99999999753  4556788999999999999999999999999975      257999999988765            


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                         +.+....|+++|+++++++++++.++.+.|  |+|++|+||+++|++.+..+
T Consensus       136 ---~~~~~~~Y~~sK~al~~~~~~l~~e~~~~g--i~v~~v~pg~v~t~~~~~~~  185 (274)
T PRK05693        136 ---VTPFAGAYCASKAAVHALSDALRLELAPFG--VQVMEVQPGAIASQFASNAS  185 (274)
T ss_pred             ---CCCCccHHHHHHHHHHHHHHHHHHHhhhhC--eEEEEEecCccccccccccc
Confidence               334567899999999999999999999888  99999999999999877543

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.98  E-value=1.2e-30  Score=219.85  Aligned_cols=186  Identities=27%  Similarity=0.322  Sum_probs=159.7

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++||+++||||+||||.+++++|+++|++|++++|+...+++..+++     .  ..++++|++++++++++++++.+.+
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~--~~~~~~D~~~~~~~~~~~~~~~~~~   77 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV-----G--GLFVPTDVTDEDAVNALFDTAAETY   77 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc-----C--CcEEEeeCCCHHHHHHHHHHHHHHc
Confidence            67899999999999999999999999999999999876655544433     1  2578999999999999999999888


Q ss_pred             CCeeEEEEccCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          107 RPLNILINNAGIMA----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       107 g~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      +++|++|||||...    +..+.+.+.+++.+++|+.+++++++.+++++.+     .+.++||++||..+..+      
T Consensus        78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~-----~~~g~iv~~sS~~~~~g------  146 (255)
T PRK06057         78 GSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVR-----QGKGSIINTASFVAVMG------  146 (255)
T ss_pred             CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHH-----hCCcEEEEEcchhhccC------
Confidence            99999999999753    2345678899999999999999999999999986     35689999999876552      


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              ...+...|+++|+++.+++++++.++.++|  |++++|+||+++|++...
T Consensus       147 --------~~~~~~~Y~~sKaal~~~~~~l~~~~~~~g--i~v~~i~pg~v~t~~~~~  194 (255)
T PRK06057        147 --------SATSQISYTASKGGVLAMSRELGVQFARQG--IRVNALCPGPVNTPLLQE  194 (255)
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHHHhhC--cEEEEEeeCCcCCchhhh
Confidence                    112456899999999999999999999888  999999999999998654

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.98  E-value=1.7e-30  Score=217.86  Aligned_cols=190  Identities=29%  Similarity=0.340  Sum_probs=167.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++|++|||||+|+||.+++++|+++|++|++++|+.+..++..+.+...  +.++.++++|++|.++++++++++.+.+
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK--GGNAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999999988777777666554  4578999999999999999999999989


Q ss_pred             CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          107 RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       107 g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      +++|++|||+|...  +..+.+.+++.+.+++|+.+++++++++.+.+.+     .+.+++|++||..+..         
T Consensus        79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~ii~iss~~~~~---------  144 (250)
T TIGR03206        79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVE-----RGAGRIVNIASDAARV---------  144 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCeEEEEECchhhcc---------
Confidence            99999999999753  3445678889999999999999999999999986     4467999999988765         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                            +.+....|+.+|+++++++++++.++.+.+  |+++.++||.++|++...
T Consensus       145 ------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~--i~v~~v~pg~~~~~~~~~  192 (250)
T TIGR03206       145 ------GSSGEAVYAACKGGLVAFSKTMAREHARHG--ITVNVVCPGPTDTALLDD  192 (250)
T ss_pred             ------CCCCCchHHHHHHHHHHHHHHHHHHHhHhC--cEEEEEecCcccchhHHh
Confidence                  344567899999999999999999998877  999999999999997654

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.98  E-value=1.9e-30  Score=217.46  Aligned_cols=190  Identities=33%  Similarity=0.397  Sum_probs=159.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec-cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRN-MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +|++|||||+++||.+++++|+++|++|+++.++ .+..++..+.+...  +.++.++++|++|.++++.+++++.+.++
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQ--GGEALAVAADVADEADVLRLFEAVDRELG   79 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhC--CCcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence            5799999999999999999999999999888744 44455555555443  45688999999999999999999999999


Q ss_pred             CeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          108 PLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       108 ~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      ++|++|||||...   +..+.+.++|.+++++|+.+++.+++++++.+.++.  .+++|+||++||..+..+        
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~g~iv~~sS~~~~~~--------  149 (248)
T PRK06123         80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRH--GGRGGAIVNVSSMAARLG--------  149 (248)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCCCeEEEEECchhhcCC--------
Confidence            9999999999764   244578889999999999999999999999987521  123579999999887652        


Q ss_pred             CCCcccCCCC-ccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          185 KINDESAYNS-FGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       185 ~~~~~~~~~~-~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                             .+. ...|+++|+++++++++++.++.++|  |++++|+||.+.|++..
T Consensus       150 -------~~~~~~~Y~~sKaa~~~~~~~la~~~~~~~--i~v~~i~pg~v~~~~~~  196 (248)
T PRK06123        150 -------SPGEYIDYAASKGAIDTMTIGLAKEVAAEG--IRVNAVRPGVIYTEIHA  196 (248)
T ss_pred             -------CCCCccchHHHHHHHHHHHHHHHHHhcccC--eEEEEEecCcccCchhh
Confidence                   222 35699999999999999999998888  99999999999999754

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.98  E-value=1.2e-30  Score=217.99  Aligned_cols=188  Identities=28%  Similarity=0.368  Sum_probs=165.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .+..+|.|+|||+.+|+|+.+|++|.++|+.|++.+..++..+.+..+..    ..+...++.|++++++|+++.+.+.+
T Consensus        25 ~~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~----s~rl~t~~LDVT~~esi~~a~~~V~~  100 (322)
T KOG1610|consen   25 DSLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK----SPRLRTLQLDVTKPESVKEAAQWVKK  100 (322)
T ss_pred             cccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc----CCcceeEeeccCCHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999988776655555543    44788889999999999999998877


Q ss_pred             CC--CCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          105 QG--RPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       105 ~~--g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      ..  .++..||||||+.   .+.+-.+.+++.+++++|+.|++.++++++|.+++      .+||||++||+.|..    
T Consensus       101 ~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~------arGRvVnvsS~~GR~----  170 (322)
T KOG1610|consen  101 HLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRR------ARGRVVNVSSVLGRV----  170 (322)
T ss_pred             hcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHh------ccCeEEEecccccCc----
Confidence            54  3599999999966   34455788999999999999999999999999997      479999999999866    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                 +.+...+|.+||+|++.++.++++|+.+.|  |.|..|.||+.+|++..
T Consensus       171 -----------~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fG--V~VsiiePG~f~T~l~~  217 (322)
T KOG1610|consen  171 -----------ALPALGPYCVSKFAVEAFSDSLRRELRPFG--VKVSIIEPGFFKTNLAN  217 (322)
T ss_pred             -----------cCcccccchhhHHHHHHHHHHHHHHHHhcC--cEEEEeccCccccccCC
Confidence                       556778999999999999999999999999  99999999999999875

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.98  E-value=1.6e-30  Score=216.94  Aligned_cols=187  Identities=25%  Similarity=0.309  Sum_probs=160.3

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++||||++|||.++|++|+++|++|++++|.. +.+++..+++...  +.++.++++|++|.+++..+++++.+.++++|
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~   78 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQ--GGNARLLQFDVADRVACRTLLEADIAEHGAYY   78 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            58999999999999999999999999988753 4556666666654  45799999999999999999999999999999


Q ss_pred             EEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          111 ILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLL-DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       111 ~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|||+|...  +..+.+.++|.+++++|+.++++++++++ |.+++     .+.++||++||..+..            
T Consensus        79 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----~~~~~iv~vsS~~~~~------------  141 (239)
T TIGR01831        79 GVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRA-----RQGGRIITLASVSGVM------------  141 (239)
T ss_pred             EEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-----cCCeEEEEEcchhhcc------------
Confidence            9999999764  33457889999999999999999999875 44443     3457999999988776            


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                         +.++...|+++|+++.+++++++.++.++|  |++|+|+||+++|++.....
T Consensus       142 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~~~  191 (239)
T TIGR01831       142 ---GNRGQVNYSAAKAGLIGATKALAVELAKRK--ITVNCIAPGLIDTEMLAEVE  191 (239)
T ss_pred             ---CCCCCcchHHHHHHHHHHHHHHHHHHhHhC--eEEEEEEEccCccccchhhh
Confidence               444667899999999999999999999888  99999999999999976543

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.98  E-value=1.9e-30  Score=218.45  Aligned_cols=189  Identities=31%  Similarity=0.316  Sum_probs=168.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++|++|||||+|+||.+++++|+++|++|++++|+.+..++..+++.+.  +.++.++.+|++|+++++.+++++.+.+
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999999999999999999999988887777777654  5678999999999999999999999999


Q ss_pred             CCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          107 RPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       107 g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      +.+|++|||||....  ..+.+.+++.+.+++|+.+++.+++.+++.+.+     .+.++||++||..+..         
T Consensus        80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~iss~~~~~---------  145 (258)
T PRK12429         80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKA-----QGGGRIINMASVHGLV---------  145 (258)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHh-----cCCeEEEEEcchhhcc---------
Confidence            999999999997643  456778899999999999999999999999987     4568999999988765         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                            +.++...|+++|++++++++.++.++...+  |++++++||++.|++..
T Consensus       146 ------~~~~~~~y~~~k~a~~~~~~~l~~~~~~~~--i~v~~~~pg~v~~~~~~  192 (258)
T PRK12429        146 ------GSAGKAAYVSAKHGLIGLTKVVALEGATHG--VTVNAICPGYVDTPLVR  192 (258)
T ss_pred             ------CCCCcchhHHHHHHHHHHHHHHHHHhcccC--eEEEEEecCCCcchhhh
Confidence                  455778999999999999999999998877  99999999999998764

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.97  E-value=3.7e-30  Score=216.18  Aligned_cols=182  Identities=24%  Similarity=0.392  Sum_probs=159.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ++++||||+||||.+++++|+++|++|++++|+.+.+++..+.+     +.++.++.+|++|+++++.+++++.+.++++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i   75 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWRNI   75 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            47999999999999999999999999999999987665554433     3468899999999999999999999989999


Q ss_pred             eEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          110 NILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       110 d~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      |++|||||...   +..+.+.+++++++++|+.+++.+++.+++++.+     .+.++||++||..+..           
T Consensus        76 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~-----------  139 (248)
T PRK10538         76 DVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVE-----RNHGHIINIGSTAGSW-----------  139 (248)
T ss_pred             CEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEECCcccCC-----------
Confidence            99999999752   4456788999999999999999999999999986     4567999999987654           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                          +..+...|+.+|++++++++.++.++...+  |++|+|+||.+.|+.+
T Consensus       140 ----~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~--i~v~~v~pg~i~~~~~  185 (248)
T PRK10538        140 ----PYAGGNVYGATKAFVRQFSLNLRTDLHGTA--VRVTDIEPGLVGGTEF  185 (248)
T ss_pred             ----CCCCCchhHHHHHHHHHHHHHHHHHhcCCC--cEEEEEeCCeeccccc
Confidence                445667899999999999999999999888  9999999999985544

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.97  E-value=4.5e-30  Score=216.77  Aligned_cols=186  Identities=24%  Similarity=0.311  Sum_probs=158.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec-cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN-MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ..+|++|||||++|||++++++|+++|++|+++.+. .+.++.+.+++...  +.++.++.+|++|.+++.++++++.+.
T Consensus         7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~~   84 (258)
T PRK09134          7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRAL--GRRAVALQADLADEAEVRALVARASAA   84 (258)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999887764 45556666666544  557899999999999999999999988


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++++|++|||||...  +..+.+.+++.+++++|+.+++++++++.+.+.+     +..++||+++|..+..        
T Consensus        85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~~~s~~~~~--------  151 (258)
T PRK09134         85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPA-----DARGLVVNMIDQRVWN--------  151 (258)
T ss_pred             cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCceEEEECchhhcC--------
Confidence            999999999999763  3456788999999999999999999999999976     4568999998866443        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                             +.+.+..|+++|+++++++++++.++..+   |++|+|+||++.|+.
T Consensus       152 -------~~p~~~~Y~~sK~a~~~~~~~la~~~~~~---i~v~~i~PG~v~t~~  195 (258)
T PRK09134        152 -------LNPDFLSYTLSKAALWTATRTLAQALAPR---IRVNAIGPGPTLPSG  195 (258)
T ss_pred             -------CCCCchHHHHHHHHHHHHHHHHHHHhcCC---cEEEEeecccccCCc
Confidence                   33445689999999999999999998653   999999999998864

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.97  E-value=2.1e-30  Score=214.62  Aligned_cols=171  Identities=19%  Similarity=0.159  Sum_probs=145.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      +++||||++|||++++++|+++|++|++++|+.+++++..+++       .+.++++|++|+++++++++++.+   ++|
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~~~~~---~id   71 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL-------DVDAIVCDNTDPASLEEARGLFPH---HLD   71 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-------cCcEEecCCCCHHHHHHHHHHHhh---cCc
Confidence            5899999999999999999999999999999987765554443       356889999999999999988753   599


Q ss_pred             EEEEccCCCC----C----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          111 ILINNAGIMA----S----PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       111 ~lv~~ag~~~----~----~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|||||...    +    ..+ +.++|.+++++|+.++++++|+++|.|.+       .|+||++||...         
T Consensus        72 ~lv~~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-------~g~Iv~isS~~~---------  134 (223)
T PRK05884         72 TIVNVPAPSWDAGDPRTYSLAD-TANAWRNALDATVLSAVLTVQSVGDHLRS-------GGSIISVVPENP---------  134 (223)
T ss_pred             EEEECCCccccCCCCcccchhc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CCeEEEEecCCC---------
Confidence            9999998421    1    112 46889999999999999999999999964       489999999651         


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +....|+++|+|+.+|+++++.|+.++|  |+||+|+||+++|++.+.
T Consensus       135 ----------~~~~~Y~asKaal~~~~~~la~e~~~~g--I~v~~v~PG~v~t~~~~~  180 (223)
T PRK05884        135 ----------PAGSAEAAIKAALSNWTAGQAAVFGTRG--ITINAVACGRSVQPGYDG  180 (223)
T ss_pred             ----------CCccccHHHHHHHHHHHHHHHHHhhhcC--eEEEEEecCccCchhhhh
Confidence                      1346899999999999999999999988  999999999999997653

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.97  E-value=3.6e-30  Score=215.86  Aligned_cols=192  Identities=32%  Similarity=0.377  Sum_probs=161.2

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEE-eccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAV-RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|++|||||++|||.+++++|+++|++|+++. |+.+.++...+++...  +.++.+++||+++.++++.+++++.+.++
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAA--GGRACVVAGDVANEADVIAMFDAVQSAFG   79 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            37899999999999999999999999988765 5656666666666543  45789999999999999999999998899


Q ss_pred             CeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          108 PLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       108 ~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      ++|++|||||...   +..+.+.+++.+++++|+.+++.+++++++.+..+.  .++.++||++||..+..+.+      
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~~~ii~~sS~~~~~~~~------  151 (248)
T PRK06947         80 RLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDR--GGRGGAIVNVSSIASRLGSP------  151 (248)
T ss_pred             CCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CCCCcEEEEECchhhcCCCC------
Confidence            9999999999763   245678889999999999999999999999887521  12357899999988765211      


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              ..+..|+++|+++.+++++++.++.+.|  |+++.|+||+++|++...
T Consensus       152 --------~~~~~Y~~sK~~~~~~~~~la~~~~~~~--i~v~~i~Pg~v~t~~~~~  197 (248)
T PRK06947        152 --------NEYVDYAGSKGAVDTLTLGLAKELGPHG--VRVNAVRPGLIETEIHAS  197 (248)
T ss_pred             --------CCCcccHhhHHHHHHHHHHHHHHhhhhC--cEEEEEeccCcccccccc
Confidence                    1245799999999999999999998888  999999999999998653

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.97  E-value=5.3e-30  Score=215.00  Aligned_cols=192  Identities=24%  Similarity=0.256  Sum_probs=165.8

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++++++|||||+|+||.+++++|+++|++|++++|+.+++++..+++...  +.++.++++|++++++++++++++.+.
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL--GTEVRGYAANVTDEEDVEATFAQIAED   79 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999988888777777654  557889999999999999999999888


Q ss_pred             CCCeeEEEEccCCCCCC-----------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          106 GRPLNILINNAGIMASP-----------FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~-----------~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      ++++|++|||||...+.           .+.+.+.+..++++|+.+++.+++.+.+.+.+.    ...++||++||... 
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~----~~~~~iv~~ss~~~-  154 (253)
T PRK08217         80 FGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIES----GSKGVIINISSIAR-  154 (253)
T ss_pred             cCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc----CCCeEEEEEccccc-
Confidence            88999999999965321           345778999999999999999999999999752    24578999988643 


Q ss_pred             cccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          175 FAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      .               +.++...|+++|+++++++++++.++.+++  |++++++||+++|++....
T Consensus       155 ~---------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~--i~v~~v~pg~v~t~~~~~~  204 (253)
T PRK08217        155 A---------------GNMGQTNYSASKAGVAAMTVTWAKELARYG--IRVAAIAPGVIETEMTAAM  204 (253)
T ss_pred             c---------------CCCCCchhHHHHHHHHHHHHHHHHHHHHcC--cEEEEEeeCCCcCcccccc
Confidence            2               333567899999999999999999998887  9999999999999987654

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.97  E-value=4.5e-30  Score=216.72  Aligned_cols=190  Identities=26%  Similarity=0.323  Sum_probs=166.3

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCe-EEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVH-VIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .+++|+++||||+++||++++++|+++|++ |++++|+.+......+++...  +.++.++.+|+++++++.++++++.+
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADE   80 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999999998 999999987777766666443  56788999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++|||+|...  +..+.+.+.+.+++++|+.+++++++++++.+.+.    ...+++|++||..+..       
T Consensus        81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~~g~iv~~ss~~~~~-------  149 (260)
T PRK06198         81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRR----KAEGTIVNIGSMSAHG-------  149 (260)
T ss_pred             HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCCEEEEECCccccc-------
Confidence            9999999999999764  24467889999999999999999999999999762    2357999999988654       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                              +.+....|+.+|+++++++++++.++...+  |++++|+||++.|++.
T Consensus       150 --------~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~--i~v~~i~pg~~~t~~~  195 (260)
T PRK06198        150 --------GQPFLAAYCASKGALATLTRNAAYALLRNR--IRVNGLNIGWMATEGE  195 (260)
T ss_pred             --------CCCCcchhHHHHHHHHHHHHHHHHHhcccC--eEEEEEeeccccCcch
Confidence                    334567899999999999999999999888  9999999999999874

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=3.7e-31  Score=208.87  Aligned_cols=182  Identities=26%  Similarity=0.304  Sum_probs=163.8

Q ss_pred             CcEEEEecCC-CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc-CC
Q 025275           29 GLTAIVTGAS-SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS-QG  106 (255)
Q Consensus        29 ~k~vlItG~s-~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~-~~  106 (255)
                      .|.++|||++ ||||.++|++|++.|+.|+.+.|..+.++++..+.       .+..+++|+++++++..+..+++. .+
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~-------gl~~~kLDV~~~~~V~~v~~evr~~~~   79 (289)
T KOG1209|consen    7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF-------GLKPYKLDVSKPEEVVTVSGEVRANPD   79 (289)
T ss_pred             CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh-------CCeeEEeccCChHHHHHHHHHHhhCCC
Confidence            4778888876 89999999999999999999999999877765443       478899999999999999999988 78


Q ss_pred             CCeeEEEEccCCC--CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          107 RPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       107 g~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      |.+|+|+||||..  .|..+.+.+..++.+++|+.|.++|+|++...+.+      .+|.|||++|..++.         
T Consensus        80 Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~lik------aKGtIVnvgSl~~~v---------  144 (289)
T KOG1209|consen   80 GKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIK------AKGTIVNVGSLAGVV---------  144 (289)
T ss_pred             CceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHH------ccceEEEecceeEEe---------
Confidence            9999999999976  46678899999999999999999999999976664      589999999999887         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                            |++..+.|++||||+..+++.|..|+++.|  |+|..+.||.|.|++-..
T Consensus       145 ------pfpf~~iYsAsKAAihay~~tLrlEl~PFg--v~Vin~itGGv~T~Ia~k  192 (289)
T KOG1209|consen  145 ------PFPFGSIYSASKAAIHAYARTLRLELKPFG--VRVINAITGGVATDIADK  192 (289)
T ss_pred             ------ccchhhhhhHHHHHHHHhhhhcEEeeeccc--cEEEEecccceecccccC
Confidence                  566678999999999999999999999999  999999999999987665

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.97  E-value=3.7e-30  Score=216.57  Aligned_cols=190  Identities=33%  Similarity=0.407  Sum_probs=162.7

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++++++||||+|+||+++|++|+++|++|+++ .|+.+.+++..+.+...  +.++.++++|++|++++..+++++.+
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~   80 (254)
T PRK12746          3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESN--GGKAFLIEADLNSIDGVKKLVEQLKN   80 (254)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCcCCHHHHHHHHHHHHH
Confidence            3678999999999999999999999999998775 68776666666666543  45788999999999999999999987


Q ss_pred             CC------CCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275          105 QG------RPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       105 ~~------g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      .+      +++|++|||||...+  ..+.+.+.+..++++|+.+++++++.+++.+.+       .+++|++||..+.. 
T Consensus        81 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-------~~~~v~~sS~~~~~-  152 (254)
T PRK12746         81 ELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRA-------EGRVINISSAEVRL-  152 (254)
T ss_pred             HhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc-------CCEEEEECCHHhcC-
Confidence            76      479999999997643  455688899999999999999999999999864       46999999987654 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                    +.++...|+++|+++++++++++.++.+.+  +++++++||+++|++.+..
T Consensus       153 --------------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~--i~v~~v~pg~~~t~~~~~~  201 (254)
T PRK12746        153 --------------GFTGSIAYGLSKGALNTMTLPLAKHLGERG--ITVNTIMPGYTKTDINAKL  201 (254)
T ss_pred             --------------CCCCCcchHhhHHHHHHHHHHHHHHHhhcC--cEEEEEEECCccCcchhhh
Confidence                          445677899999999999999999998888  9999999999999986543

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.97  E-value=7.6e-30  Score=217.46  Aligned_cols=190  Identities=27%  Similarity=0.364  Sum_probs=165.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ...+|+++||||+|+||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|+++++++.++++++.+.
T Consensus         7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (274)
T PRK07775          7 HPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRAD--GGEAVAFPLDVTDPDSVKSFVAQAEEA   84 (274)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            345689999999999999999999999999999999887777766666554  457889999999999999999999988


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++++|++|||||...  +..+.+.+.+.+.+++|+.+++++++++++.+.+     +..++||++||..+..        
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~-----~~~g~iv~isS~~~~~--------  151 (274)
T PRK07775         85 LGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIE-----RRRGDLIFVGSDVALR--------  151 (274)
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCceEEEECChHhcC--------
Confidence            899999999999764  3445678899999999999999999999999976     4567999999987664        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                             +.++...|+++|++++++++.++.++...|  |++++|+||+++|++..
T Consensus       152 -------~~~~~~~Y~~sK~a~~~l~~~~~~~~~~~g--i~v~~v~pG~~~t~~~~  198 (274)
T PRK07775        152 -------QRPHMGAYGAAKAGLEAMVTNLQMELEGTG--VRASIVHPGPTLTGMGW  198 (274)
T ss_pred             -------CCCCcchHHHHHHHHHHHHHHHHHHhcccC--eEEEEEeCCcccCcccc
Confidence                   334567899999999999999999998777  99999999999998654

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.97  E-value=5e-30  Score=218.54  Aligned_cols=185  Identities=29%  Similarity=0.353  Sum_probs=160.1

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      .|++|||||+|+||++++++|+++|++|++++|+.+.+++..+..     +.++.++++|++|.+++.++++++.+.+++
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRAFAALGR   76 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999876655443332     346889999999999999999999888899


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|+||||||...  +..+.+.+++.+.+++|+.++++++++++|++++     ...++||++||..+..           
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~-----------  140 (276)
T PRK06482         77 IDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRR-----QGGGRIVQVSSEGGQI-----------  140 (276)
T ss_pred             CCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCEEEEEcCccccc-----------
Confidence            999999999764  3455678899999999999999999999999986     4567999999987654           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                          +.++...|+++|++++.++++++.++.+.|  |+++.++||.+.|++...
T Consensus       141 ----~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~g--i~v~~v~pg~~~t~~~~~  188 (276)
T PRK06482        141 ----AYPGFSLYHATKWGIEGFVEAVAQEVAPFG--IEFTIVEPGPARTNFGAG  188 (276)
T ss_pred             ----CCCCCchhHHHHHHHHHHHHHHHHHhhccC--cEEEEEeCCccccCCccc
Confidence                344678999999999999999999998877  999999999999988653

>PRK12742 oxidoreductase; Provisional

Probab=99.97  E-value=5.4e-30  Score=213.28  Aligned_cols=181  Identities=27%  Similarity=0.327  Sum_probs=150.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec-cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN-MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .+++|++|||||+||||++++++|+++|++|+++++. .+..++..+++       .+.++.+|++|.+++.+++++   
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-------~~~~~~~D~~~~~~~~~~~~~---   72 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET-------GATAVQTDSADRDAVIDVVRK---   72 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh-------CCeEEecCCCCHHHHHHHHHH---
Confidence            4678999999999999999999999999999888764 33333322221       256788999999988877754   


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                       ++++|++|||||...  +..+.+.++|++.+++|+.+++.+++.+++++.+       .|+||++||..+...      
T Consensus        73 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-------~g~iv~isS~~~~~~------  138 (237)
T PRK12742         73 -SGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPE-------GGRIIIIGSVNGDRM------  138 (237)
T ss_pred             -hCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhc-------CCeEEEEeccccccC------
Confidence             578999999999763  3456788999999999999999999999999864       579999999875321      


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|+++++++++++.++.+.|  |+||+|+||+++|++...
T Consensus       139 --------~~~~~~~Y~~sKaa~~~~~~~la~~~~~~g--i~v~~v~Pg~~~t~~~~~  186 (237)
T PRK12742        139 --------PVAGMAAYAASKSALQGMARGLARDFGPRG--ITINVVQPGPIDTDANPA  186 (237)
T ss_pred             --------CCCCCcchHHhHHHHHHHHHHHHHHHhhhC--eEEEEEecCcccCCcccc
Confidence                    445678999999999999999999999888  999999999999998654

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.97  E-value=4.3e-30  Score=218.08  Aligned_cols=189  Identities=20%  Similarity=0.210  Sum_probs=151.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEec-cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHH----HHHHHHHhc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRN-MAAGKDVREAIVKEIPSAKVDAMELDVSSLASV----RKFASEYNS  104 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si----~~~~~~~~~  104 (255)
                      ++++||||++|||++++++|+++|++|++++|. .+.+.+..+++.... +.++.++.+|++|++++    +++++++.+
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~   80 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARR-PNSAVTCQADLSNSATLFSRCEAIIDACFR   80 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhcc-CCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence            689999999999999999999999999998654 556666666664432 34677899999998855    666777778


Q ss_pred             CCCCeeEEEEccCCCCC--CCCCCh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCeEEEecC
Q 025275          105 QGRPLNILINNAGIMAS--PFMLSK-----------DNIELQFATNHLGHFLLTHLLLDTMKKTAQ-KSSREGRIVNVSS  170 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~--~~~~~~-----------~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~g~ii~vsS  170 (255)
                      .+|++|+||||||...+  ..+.+.           +++.+++++|+.+++.+++++++++..... ..+..++||+++|
T Consensus        81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s  160 (267)
T TIGR02685        81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCD  160 (267)
T ss_pred             ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehh
Confidence            88999999999997532  222222           358899999999999999999999864211 1123578999999


Q ss_pred             CccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          171 EAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      ..+..               +.+++..|+++|+++++|+++++.|+.+.|  |++|+|+||+++|+
T Consensus       161 ~~~~~---------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~~~~~  209 (267)
T TIGR02685       161 AMTDQ---------------PLLGFTMYTMAKHALEGLTRSAALELAPLQ--IRVNGVAPGLSLLP  209 (267)
T ss_pred             hhccC---------------CCcccchhHHHHHHHHHHHHHHHHHHhhhC--eEEEEEecCCccCc
Confidence            87654               455778999999999999999999999888  99999999999776

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.97  E-value=8.2e-30  Score=214.09  Aligned_cols=190  Identities=37%  Similarity=0.427  Sum_probs=162.5

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch--HHHHHHHHHhhCCC-CceEEEEeCCCC-HHHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA--GKDVREAIVKEIPS-AKVDAMELDVSS-LASVRKFASE  101 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~--~~~~~~~~~~~~~~-~~~~~~~~Dl~~-~~si~~~~~~  101 (255)
                      .+++|+++||||++|||+++|++|+++|++|+++.++.+.  .+...+...  ..+ ..+.+.++|+++ .++++.++++
T Consensus         2 ~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvs~~~~~v~~~~~~   79 (251)
T COG1028           2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK--EAGGGRAAAVAADVSDDEESVEALVAA   79 (251)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH--hcCCCcEEEEEecCCCCHHHHHHHHHH
Confidence            5678999999999999999999999999999988888765  333333333  112 368889999998 9999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      +.+.+|++|++|||||...   +..+.+.+++++++++|+.+.+.+++.+.|.+++     +   +||++||..+. ..+
T Consensus        80 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-----~---~Iv~isS~~~~-~~~  150 (251)
T COG1028          80 AEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKK-----Q---RIVNISSVAGL-GGP  150 (251)
T ss_pred             HHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhh-----C---eEEEECCchhc-CCC
Confidence            9999999999999999874   5677888999999999999999999988888874     2   99999999865 322


Q ss_pred             cCccCCCCCcccCCCC-ccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          179 EGIRFDKINDESAYNS-FGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~-~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                                     + +..|++||+|+.+|++.++.++.+.|  |++|+|+||+++|++......
T Consensus       151 ---------------~~~~~Y~~sK~al~~~~~~l~~e~~~~g--i~v~~v~PG~~~t~~~~~~~~  199 (251)
T COG1028         151 ---------------PGQAAYAASKAALIGLTKALALELAPRG--IRVNAVAPGYIDTPMTAALES  199 (251)
T ss_pred             ---------------CCcchHHHHHHHHHHHHHHHHHHHhhhC--cEEEEEEeccCCCcchhhhhh
Confidence                           2 58999999999999999999999988  999999999999999875443

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.97  E-value=8.8e-30  Score=212.81  Aligned_cols=188  Identities=31%  Similarity=0.311  Sum_probs=161.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc-hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      |+++||||+++||.++|++|+++|++|++++|+.. ..++..+.+..  .+.++.++++|+++.+++..+++++.+++++
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   80 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGF--TEDQVRLKELDVTDTEECAEALAEIEEEEGP   80 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhc--cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999854 12222222222  1457899999999999999999999999999


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|++|||+|...  +..+.+.+++.+.+++|+.+++++++.+++.+.+     ...++||++||..+..           
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~iss~~~~~-----------  144 (245)
T PRK12824         81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCE-----QGYGRIINISSVNGLK-----------  144 (245)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----hCCeEEEEECChhhcc-----------
Confidence            999999999763  3456788999999999999999999999999987     4567999999988664           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                          +.++...|+++|++++++++.++.++.+.|  |+++.++||++.|++.+..
T Consensus       145 ----~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~--i~v~~v~pg~~~t~~~~~~  193 (245)
T PRK12824        145 ----GQFGQTNYSAAKAGMIGFTKALASEGARYG--ITVNCIAPGYIATPMVEQM  193 (245)
T ss_pred             ----CCCCChHHHHHHHHHHHHHHHHHHHHHHhC--eEEEEEEEcccCCcchhhc
Confidence                444678899999999999999999998888  9999999999999987643

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.97  E-value=4.3e-30  Score=243.49  Aligned_cols=193  Identities=28%  Similarity=0.271  Sum_probs=169.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ...+++|+++||||+||||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.++++++++++.
T Consensus       366 ~~~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~  443 (657)
T PRK07201        366 RGPLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAK--GGTAHAYTCDLTDSAAVDHTVKDIL  443 (657)
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999998888888877654  5579999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCCC--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          104 SQGRPLNILINNAGIMAS--PFML--SKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~--~~~~--~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.+|++|++|||||....  ..+.  ..+++.+++++|+.+++.++++++|.|.+     .+.|+||++||..+..    
T Consensus       444 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~----  514 (657)
T PRK07201        444 AEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRE-----RRFGHVVNVSSIGVQT----  514 (657)
T ss_pred             HhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCCEEEEECChhhcC----
Confidence            999999999999997532  1111  25789999999999999999999999987     4568999999988765    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                 +.+..+.|+++|+++++++++++.|+.+.|  |++|+|+||+++|++...
T Consensus       515 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~--i~v~~v~pg~v~T~~~~~  562 (657)
T PRK07201        515 -----------NAPRFSAYVASKAALDAFSDVAASETLSDG--ITFTTIHMPLVRTPMIAP  562 (657)
T ss_pred             -----------CCCCcchHHHHHHHHHHHHHHHHHHHHhhC--CcEEEEECCcCcccccCc
Confidence                       444677899999999999999999999888  999999999999998764

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.97  E-value=8.5e-30  Score=214.48  Aligned_cols=193  Identities=25%  Similarity=0.291  Sum_probs=162.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc-hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +|++|||||+|+||.+++++|+++|++|++++|+.. ...+..+.+...  +.++.++++|+++++++.++++++.+.++
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRAL--GVEVIFFPADVADLSAHEAMLDAAQAAWG   79 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            489999999999999999999999999999998743 444555555443  45789999999999999999999999999


Q ss_pred             CeeEEEEccCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCeEEEecCCccccccccCcc
Q 025275          108 PLNILINNAGIMA----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKS-SREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       108 ~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|||||...    ++.+.+.+.+++.+++|+.+++++++++.+.+.++.... ...++||++||..+..       
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-------  152 (256)
T PRK12745         80 RIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM-------  152 (256)
T ss_pred             CCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc-------
Confidence            9999999999753    244577899999999999999999999999998632110 1146799999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +..+...|+.+|+++++++++++.++.+.|  |+++.|+||.+.|++...
T Consensus       153 --------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~g--i~v~~i~pg~v~t~~~~~  200 (256)
T PRK12745        153 --------VSPNRGEYCISKAGLSMAAQLFAARLAEEG--IGVYEVRPGLIKTDMTAP  200 (256)
T ss_pred             --------CCCCCcccHHHHHHHHHHHHHHHHHHHHhC--CEEEEEecCCCcCccccc
Confidence                    344667899999999999999999998888  999999999999987654

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.97  E-value=7.9e-30  Score=203.37  Aligned_cols=201  Identities=32%  Similarity=0.383  Sum_probs=161.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcC-CeE-EEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC--
Q 025275           30 LTAIVTGASSGIGTETARVLALRG-VHV-IMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ--  105 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G-~~V-i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~--  105 (255)
                      |.++||||.+|||..++++|.+.. -++ +.+.|+.+...+..+.+...  +.+++++++|+++.++++.+++++.+-  
T Consensus         4 ksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~--d~rvHii~Ldvt~deS~~~~~~~V~~iVg   81 (249)
T KOG1611|consen    4 KSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKS--DSRVHIIQLDVTCDESIDNFVQEVEKIVG   81 (249)
T ss_pred             ccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhcc--CCceEEEEEecccHHHHHHHHHHHHhhcc
Confidence            559999999999999999999854 454 45566677653222222222  569999999999999999999999886  


Q ss_pred             CCCeeEEEEccCCCCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cCCCCCeEEEecCCccccc
Q 025275          106 GRPLNILINNAGIMAS---PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQ------KSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~---~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~------~~~~~g~ii~vsS~~~~~~  176 (255)
                      ..++|+++||||+..+   ..+.+.+.|.+.+++|..|++.+.|+++|.+++...      ....+..|||+||..+..+
T Consensus        82 ~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~  161 (249)
T KOG1611|consen   82 SDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIG  161 (249)
T ss_pred             cCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccC
Confidence            5679999999998753   344667889999999999999999999999987442      2335568999999887642


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCcccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRG  246 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~~~~  246 (255)
                      ..            ...++.+|.+||+|+.+|+|+++.++++++  |-|..+|||||.|+|.........
T Consensus       162 ~~------------~~~~~~AYrmSKaAlN~f~ksls~dL~~~~--ilv~sihPGwV~TDMgg~~a~ltv  217 (249)
T KOG1611|consen  162 GF------------RPGGLSAYRMSKAALNMFAKSLSVDLKDDH--ILVVSIHPGWVQTDMGGKKAALTV  217 (249)
T ss_pred             CC------------CCcchhhhHhhHHHHHHHHHHhhhhhcCCc--EEEEEecCCeEEcCCCCCCcccch
Confidence            11            334678999999999999999999999888  999999999999999886665443

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=1.1e-31  Score=205.69  Aligned_cols=185  Identities=28%  Similarity=0.333  Sum_probs=163.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++.|+++++||+.-|||++++++|++.|++||...|+++.++.+.++.     ..-++.+..|+++++.+.+.+..   
T Consensus         3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~-----p~~I~Pi~~Dls~wea~~~~l~~---   74 (245)
T KOG1207|consen    3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKET-----PSLIIPIVGDLSAWEALFKLLVP---   74 (245)
T ss_pred             ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhC-----CcceeeeEecccHHHHHHHhhcc---
Confidence            5678999999999999999999999999999999999999887777664     33588999999998777666654   


Q ss_pred             CCCCeeEEEEccCCC--CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                       .+.+|.+|||||+.  +++.+.+.++++..+++|+.+++.+.|...+-+..+    ..+|.||++||.++..       
T Consensus        75 -v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R----~~~GaIVNvSSqas~R-------  142 (245)
T KOG1207|consen   75 -VFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDR----QIKGAIVNVSSQASIR-------  142 (245)
T ss_pred             -cCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhc----cCCceEEEecchhccc-------
Confidence             36799999999976  678889999999999999999999999977766542    5678999999999877       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                              +..+...|.++|+|+.+++|++|.|+++++  ||||+|.|..+.|+|.+
T Consensus       143 --------~~~nHtvYcatKaALDmlTk~lAlELGp~k--IRVNsVNPTVVmT~MG~  189 (245)
T KOG1207|consen  143 --------PLDNHTVYCATKAALDMLTKCLALELGPQK--IRVNSVNPTVVMTDMGR  189 (245)
T ss_pred             --------ccCCceEEeecHHHHHHHHHHHHHhhCcce--eEeeccCCeEEEecccc
Confidence                    667889999999999999999999999998  99999999999999976

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.97  E-value=1.1e-29  Score=214.85  Aligned_cols=187  Identities=28%  Similarity=0.325  Sum_probs=164.6

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++++|||||+|+||++++++|+++|++|++++|+.++.++..+.+...  +.++.++.+|++|+++++.+++++.+++++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   78 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH--GGEALVVPTDVSDAEACERLIEAAVARFGG   78 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999988777777776654  557899999999999999999999999999


Q ss_pred             eeEEEEccCCCCC--CCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          109 LNILINNAGIMAS--PFML-SKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       109 id~lv~~ag~~~~--~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      +|++|||+|....  ..+. +.+++.+.+++|+.+++++++.+.+++.+      ..+++|++||..+..          
T Consensus        79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~------~~~~iv~~sS~~~~~----------  142 (263)
T PRK06181         79 IDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKA------SRGQIVVVSSLAGLT----------  142 (263)
T ss_pred             CCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh------cCCEEEEEecccccC----------
Confidence            9999999997642  3445 78889999999999999999999999875      257999999988765          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                           +.++...|+.+|+++++++++++.++.+.+  |++++|.||++.|++.+.
T Consensus       143 -----~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~--i~~~~i~pg~v~t~~~~~  190 (263)
T PRK06181        143 -----GVPTRSGYAASKHALHGFFDSLRIELADDG--VAVTVVCPGFVATDIRKR  190 (263)
T ss_pred             -----CCCCccHHHHHHHHHHHHHHHHHHHhhhcC--ceEEEEecCccccCcchh
Confidence                 444668899999999999999999998888  999999999999998653

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.97  E-value=1.5e-29  Score=211.76  Aligned_cols=187  Identities=23%  Similarity=0.266  Sum_probs=162.7

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |+++||||+||||.+++++|+++|++|++++|+.+..++..+.+... ++.++.++++|++|+++++++++++.+   .+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~   77 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR-GAVAVSTHELDILDTASHAAFLDSLPA---LP   77 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-cCCeEEEEecCCCChHHHHHHHHHHhh---cC
Confidence            68999999999999999999999999999999988877777766543 355899999999999999999998765   36


Q ss_pred             eEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          110 NILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       110 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      |++|||+|...  +..+.+.+++.+.+++|+.+++++++++.+++.+     .+.+++|++||..+..            
T Consensus        78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~------------  140 (243)
T PRK07102         78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEA-----RGSGTIVGISSVAGDR------------  140 (243)
T ss_pred             CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-----CCCCEEEEEecccccC------------
Confidence            99999999763  3445778899999999999999999999999987     4578999999987655            


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                         +.++...|+++|+++.+++++++.++.+.|  |++++|+||.++|++.....
T Consensus       141 ---~~~~~~~Y~~sK~a~~~~~~~l~~el~~~g--i~v~~v~pg~v~t~~~~~~~  190 (243)
T PRK07102        141 ---GRASNYVYGSAKAALTAFLSGLRNRLFKSG--VHVLTVKPGFVRTPMTAGLK  190 (243)
T ss_pred             ---CCCCCcccHHHHHHHHHHHHHHHHHhhccC--cEEEEEecCcccChhhhccC
Confidence               334567899999999999999999999888  99999999999999876654

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.97  E-value=1.2e-29  Score=212.93  Aligned_cols=189  Identities=24%  Similarity=0.263  Sum_probs=160.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ++++++++|||||+|+||++++++|+++|++|++..|+. +......+.+...  +.++.++.+|+++++++..+++++.
T Consensus         2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   79 (252)
T PRK06077          2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKEN--GGEGIGVLADVSTREGCETLAKATI   79 (252)
T ss_pred             CCCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHc--CCeeEEEEeccCCHHHHHHHHHHHH
Confidence            567789999999999999999999999999988877543 3444444444443  4568899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|++|||||...  +..+.+.+.+.+.+++|+.+++.+++++.+++++       .++||++||..+..      
T Consensus        80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-------~~~iv~~sS~~~~~------  146 (252)
T PRK06077         80 DRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMRE-------GGAIVNIASVAGIR------  146 (252)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhc-------CcEEEEEcchhccC------
Confidence            99999999999999753  3445677888999999999999999999999865       47999999988765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|+++++++++++.++.+ +  |+++.|.||+++|++...
T Consensus       147 ---------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~-~--i~v~~v~Pg~i~t~~~~~  193 (252)
T PRK06077        147 ---------PAYGLSIYGAMKAAVINLTKYLALELAP-K--IRVNAIAPGFVKTKLGES  193 (252)
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHHhc-C--CEEEEEeeCCccChHHHh
Confidence                     5557789999999999999999999987 6  999999999999997643

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=99.97  E-value=2e-30  Score=216.54  Aligned_cols=192  Identities=28%  Similarity=0.349  Sum_probs=168.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      -.|++++|||||.|||++.|++||++|++|++++|++++++.+.+++...++ .++.++.+|+++.+++-+-+.+--+ .
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~-vev~~i~~Dft~~~~~ye~i~~~l~-~  124 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK-VEVRIIAIDFTKGDEVYEKLLEKLA-G  124 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC-cEEEEEEEecCCCchhHHHHHHHhc-C
Confidence            3459999999999999999999999999999999999999999999998875 8899999999998763222222211 1


Q ss_pred             CCeeEEEEccCCCCC----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          107 RPLNILINNAGIMAS----PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       107 g~id~lv~~ag~~~~----~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ..+.+||||+|....    +.+.+.+.+++.+.+|+.++..+++.++|.|.+     +++|-||++||.+|..       
T Consensus       125 ~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~-----r~~G~IvnigS~ag~~-------  192 (312)
T KOG1014|consen  125 LDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVE-----RKKGIIVNIGSFAGLI-------  192 (312)
T ss_pred             CceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhc-----CCCceEEEeccccccc-------
Confidence            368999999998752    345666688999999999999999999999998     7899999999999887       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                              +.+.++.|+++|+.+..|+++|+.|++.+|  |.|.+|.|+.|.|+|.....
T Consensus       193 --------p~p~~s~ysasK~~v~~~S~~L~~Ey~~~g--I~Vq~v~p~~VaTkm~~~~~  242 (312)
T KOG1014|consen  193 --------PTPLLSVYSASKAFVDFFSRCLQKEYESKG--IFVQSVIPYLVATKMAKYRK  242 (312)
T ss_pred             --------cChhHHHHHHHHHHHHHHHHHHHHHHHhcC--eEEEEeehhheeccccccCC
Confidence                    777889999999999999999999999999  99999999999999987655

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.97  E-value=1.9e-29  Score=210.36  Aligned_cols=187  Identities=27%  Similarity=0.319  Sum_probs=161.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-ccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      |++|||||+|+||++++++|+++|++|++++| +.+...+..+++...  +.++.++.+|++|++++.++++++.+.+++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGAL--GFDFRVVEGDVSSFESCKAAVAKVEAELGP   78 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhh--CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999988 544455555544433  457899999999999999999999998999


Q ss_pred             eeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|++|||+|...+  ..+.+.+++.+.+++|+.+++.+++.+++.+.+     .+.++||++||..+..           
T Consensus        79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~iv~iss~~~~~-----------  142 (242)
T TIGR01829        79 IDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRE-----RGWGRIINISSVNGQK-----------  142 (242)
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEEcchhhcC-----------
Confidence            9999999997642  456788899999999999999999999999987     4567999999987654           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                          +..+...|+++|+++..++++++.++...+  |++++++||+++|++...
T Consensus       143 ----~~~~~~~y~~sk~a~~~~~~~la~~~~~~~--i~v~~i~pg~~~t~~~~~  190 (242)
T TIGR01829       143 ----GQFGQTNYSAAKAGMIGFTKALAQEGATKG--VTVNTISPGYIATDMVMA  190 (242)
T ss_pred             ----CCCCcchhHHHHHHHHHHHHHHHHHhhhhC--eEEEEEeeCCCcCccccc
Confidence                344668899999999999999999998888  999999999999998654

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.97  E-value=1.8e-29  Score=211.66  Aligned_cols=191  Identities=25%  Similarity=0.273  Sum_probs=166.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCC--CHHHHHHHHHHHh
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS--SLASVRKFASEYN  103 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--~~~si~~~~~~~~  103 (255)
                      .+++|+++||||+++||.+++++|++.|++|++++|+.+.+++..+++.... ..++.++.+|++  +++++..+++++.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHHHHH
Confidence            3589999999999999999999999999999999999888777777776542 346778888886  7889999999999


Q ss_pred             cCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          104 SQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      +.++++|+||||||...   +..+.+.+.+.+.+++|+.+++++++++++++.+     .+.++||++||..+..     
T Consensus        88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~-----~~~~~iv~~ss~~~~~-----  157 (247)
T PRK08945         88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLK-----SPAASLVFTSSSVGRQ-----  157 (247)
T ss_pred             HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHh-----CCCCEEEEEccHhhcC-----
Confidence            99999999999999753   3456778999999999999999999999999987     4567999999987665     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                +.++...|+++|++++.+++.++.++...+  |+++++.||.++|++..
T Consensus       158 ----------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~--i~~~~v~pg~v~t~~~~  204 (247)
T PRK08945        158 ----------GRANWGAYAVSKFATEGMMQVLADEYQGTN--LRVNCINPGGTRTAMRA  204 (247)
T ss_pred             ----------CCCCCcccHHHHHHHHHHHHHHHHHhcccC--EEEEEEecCCccCcchh
Confidence                      344667899999999999999999998877  99999999999998754

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.97  E-value=2.2e-29  Score=210.57  Aligned_cols=194  Identities=34%  Similarity=0.381  Sum_probs=169.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      +++++|++|||||+|+||.+++++|+++|++|+++ +|+.+...+..+.+...  +.++.++.+|++|++++.++++++.
T Consensus         1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   78 (247)
T PRK05565          1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIV   78 (247)
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence            35778999999999999999999999999999999 99888777777776653  5578999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|++||++|...  +..+.+.+++++.+++|+.+++++++.+.+.+.+     .+.+++|++||..+..      
T Consensus        79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~~v~~sS~~~~~------  147 (247)
T PRK05565         79 EKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIK-----RKSGVIVNISSIWGLI------  147 (247)
T ss_pred             HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEECCHhhcc------
Confidence            88899999999999763  2345778999999999999999999999999986     4567899999987665      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                               +.+....|+.+|+++..++++++.++...|  |++++|+||+++|++.+...
T Consensus       148 ---------~~~~~~~y~~sK~a~~~~~~~~~~~~~~~g--i~~~~v~pg~v~t~~~~~~~  197 (247)
T PRK05565        148 ---------GASCEVLYSASKGAVNAFTKALAKELAPSG--IRVNAVAPGAIDTEMWSSFS  197 (247)
T ss_pred             ---------CCCCccHHHHHHHHHHHHHHHHHHHHHHcC--eEEEEEEECCccCccccccC
Confidence                     334567899999999999999999998877  99999999999999876543

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.97  E-value=1.5e-29  Score=211.46  Aligned_cols=180  Identities=27%  Similarity=0.285  Sum_probs=153.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ++++||||+||||++++++|+++|++|++++|+.+.+++..+    .  ..++.++++|++|+++++++++++..   .+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~----~--~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   72 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHT----Q--SANIFTLAFDVTDHPGTKAALSQLPF---IP   72 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----h--cCCCeEEEeeCCCHHHHHHHHHhccc---CC
Confidence            789999999999999999999999999999998765544332    2  34688999999999999999998743   47


Q ss_pred             eEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          110 NILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       110 d~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      |++|||||....  ..+.+.+++.+++++|+.+++++++++.|+|.+       ++++|++||..+..            
T Consensus        73 d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-------~~~iv~isS~~~~~------------  133 (240)
T PRK06101         73 ELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSC-------GHRVVIVGSIASEL------------  133 (240)
T ss_pred             CEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------CCeEEEEechhhcc------------
Confidence            999999986432  234678899999999999999999999999964       46899999988765            


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                         +.++...|+++|++++++++.++.|+...|  |++++|+||.++|++.....
T Consensus       134 ---~~~~~~~Y~asK~a~~~~~~~l~~e~~~~g--i~v~~v~pg~i~t~~~~~~~  183 (240)
T PRK06101        134 ---ALPRAEAYGASKAAVAYFARTLQLDLRPKG--IEVVTVFPGFVATPLTDKNT  183 (240)
T ss_pred             ---CCCCCchhhHHHHHHHHHHHHHHHHHHhcC--ceEEEEeCCcCCCCCcCCCC
Confidence               444667899999999999999999999888  99999999999999876543

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.97  E-value=2.5e-29  Score=209.28  Aligned_cols=192  Identities=25%  Similarity=0.329  Sum_probs=166.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +.+.+++++||||+|+||.+++++|+++|++|++++|+.+++++..+++...   .+++++++|+++.+++..+++++.+
T Consensus         2 ~~~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   78 (237)
T PRK07326          2 MSLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVA   78 (237)
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999988777777766542   4688999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++||++|...  +..+.+.+++.+.+++|+.+++.+++++++.+.+      ..++||++||..+..       
T Consensus        79 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~------~~~~iv~~ss~~~~~-------  145 (237)
T PRK07326         79 AFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKR------GGGYIINISSLAGTN-------  145 (237)
T ss_pred             HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHH------CCeEEEEECChhhcc-------
Confidence            9999999999998763  3456788899999999999999999999999843      357999999987654       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                              +..+...|+.+|+++.++++.++.++...|  +++++|+||++.|++.....
T Consensus       146 --------~~~~~~~y~~sk~a~~~~~~~~~~~~~~~g--i~v~~v~pg~~~t~~~~~~~  195 (237)
T PRK07326        146 --------FFAGGAAYNASKFGLVGFSEAAMLDLRQYG--IKVSTIMPGSVATHFNGHTP  195 (237)
T ss_pred             --------CCCCCchHHHHHHHHHHHHHHHHHHhcccC--cEEEEEeeccccCccccccc
Confidence                    344567899999999999999999998887  99999999999999766543

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.97  E-value=1e-29  Score=211.46  Aligned_cols=176  Identities=30%  Similarity=0.327  Sum_probs=149.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |++++|+++||||+++||.+++++|+++|++|++++|+....         .  ..++.++.+|++++  +    +++.+
T Consensus         1 ~~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~---------~--~~~~~~~~~D~~~~--~----~~~~~   63 (235)
T PRK06550          1 QEFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD---------L--SGNFHFLQLDLSDD--L----EPLFD   63 (235)
T ss_pred             CCCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc---------c--CCcEEEEECChHHH--H----HHHHH
Confidence            457889999999999999999999999999999999885431         0  23678999999987  3    33444


Q ss_pred             CCCCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      .++++|++|||||..   .+..+.+.+++.+.+++|+.+++++++++++.+.+     .+.++||++||..+..      
T Consensus        64 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~------  132 (235)
T PRK06550         64 WVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLE-----RKSGIIINMCSIASFV------  132 (235)
T ss_pred             hhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEEcChhhcc------
Confidence            567899999999975   34456788999999999999999999999999976     4568999999988765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                               +.++...|+++|+++++++++++.++.++|  |++|+|+||+++|++..
T Consensus       133 ---------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~g--i~v~~v~pg~v~t~~~~  179 (235)
T PRK06550        133 ---------AGGGGAAYTASKHALAGFTKQLALDYAKDG--IQVFGIAPGAVKTPMTA  179 (235)
T ss_pred             ---------CCCCCcccHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeeCCccCcccc
Confidence                     344667899999999999999999999888  99999999999999764

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.97  E-value=1.9e-29  Score=238.50  Aligned_cols=192  Identities=27%  Similarity=0.351  Sum_probs=168.1

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ....+++|++|||||+||||++++++|+++|++|++++|+.+.++...+++....+..++..+++|++|++++..+++++
T Consensus       408 ~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i  487 (676)
T TIGR02632       408 KEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADV  487 (676)
T ss_pred             CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHH
Confidence            33457899999999999999999999999999999999998887777777765443456889999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+.+|++|++|||||...  +..+.+.++|...+++|+.+++.+++.+++.+.+.    +.+++||++||..+..     
T Consensus       488 ~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~----~~~g~IV~iSS~~a~~-----  558 (676)
T TIGR02632       488 ALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQ----GLGGNIVFIASKNAVY-----  558 (676)
T ss_pred             HHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeChhhcC-----
Confidence            999999999999999763  34567889999999999999999999999999862    2357999999988765     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceec
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVT  235 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t  235 (255)
                                +.++...|+++|+++++++++++.++.+.|  |+||+|+||.+.|
T Consensus       559 ----------~~~~~~aY~aSKaA~~~l~r~lA~el~~~g--IrVn~V~Pg~V~~  601 (676)
T TIGR02632       559 ----------AGKNASAYSAAKAAEAHLARCLAAEGGTYG--IRVNTVNPDAVLQ  601 (676)
T ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHHHHhcccC--eEEEEEECCceec
Confidence                      444678999999999999999999999888  9999999999975

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=9.4e-32  Score=205.87  Aligned_cols=195  Identities=29%  Similarity=0.329  Sum_probs=175.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +.+|-++|||||.+|+|++.|++|+++|+.|++++--+.+..+..+++     ++++.|.++|+++++.+..++...+.+
T Consensus         6 s~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel-----g~~~vf~padvtsekdv~aala~ak~k   80 (260)
T KOG1199|consen    6 STKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL-----GGKVVFTPADVTSEKDVRAALAKAKAK   80 (260)
T ss_pred             hhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh-----CCceEEeccccCcHHHHHHHHHHHHhh
Confidence            457889999999999999999999999999999999888888888887     789999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCCC--------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCeEEEecCCccccc
Q 025275          106 GRPLNILINNAGIMAS--------PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQ-KSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~--------~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~g~ii~vsS~~~~~~  176 (255)
                      ||++|.+|||||+...        ..-.+.|+++..+++|+.|+|++++.....|-.+++ +.+++|-||+..|.++.. 
T Consensus        81 fgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafd-  159 (260)
T KOG1199|consen   81 FGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFD-  159 (260)
T ss_pred             ccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeec-
Confidence            9999999999997631        123577999999999999999999999999876544 457889999999998665 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                    +..++.+|++||.++.+|+--++++++.+|  ||++.|.||.++||++...+
T Consensus       160 --------------gq~gqaaysaskgaivgmtlpiardla~~g--ir~~tiapglf~tpllsslp  209 (260)
T KOG1199|consen  160 --------------GQTGQAAYSASKGAIVGMTLPIARDLAGDG--IRFNTIAPGLFDTPLLSSLP  209 (260)
T ss_pred             --------------CccchhhhhcccCceEeeechhhhhcccCc--eEEEeecccccCChhhhhhh
Confidence                          566889999999999999999999999999  99999999999999976554

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.97  E-value=2.9e-29  Score=210.01  Aligned_cols=192  Identities=30%  Similarity=0.329  Sum_probs=161.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec----cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN----MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ++++++++||||+|+||++++++|+++|++|++++|.    .+...+..+++...  +.++.++.+|++|+++++.++++
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~   80 (249)
T PRK12827          3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDA   80 (249)
T ss_pred             CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence            4678999999999999999999999999999997664    33344444445443  45789999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLL-DTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      +.+.++++|++|||+|...  +..+.+.+++.+.+++|+.+++++++++. +.+.+     ...+++|++||..+..   
T Consensus        81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----~~~~~iv~~sS~~~~~---  152 (249)
T PRK12827         81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRA-----RRGGRIVNIASVAGVR---  152 (249)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-----CCCeEEEEECCchhcC---
Confidence            9988899999999999764  34567888999999999999999999999 55554     3457999999988765   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                  +.++...|+.+|++++.++++++.++.+.+  |++++|+||+++|++....
T Consensus       153 ------------~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~--i~~~~i~pg~v~t~~~~~~  201 (249)
T PRK12827        153 ------------GNRGQVNYAASKAGLIGLTKTLANELAPRG--ITVNAVAPGAINTPMADNA  201 (249)
T ss_pred             ------------CCCCCchhHHHHHHHHHHHHHHHHHhhhhC--cEEEEEEECCcCCCccccc
Confidence                        344667899999999999999999998877  9999999999999986543

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.97  E-value=4.6e-29  Score=209.04  Aligned_cols=191  Identities=30%  Similarity=0.347  Sum_probs=167.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++|++|||||+|+||++++++|+++|++|++++|+.+++.+..+.+...  +.++.++.+|++|.++++.+++++..++
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA--GGKARARQVDVRDRAALKAAVAAGVEDF   81 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            56799999999999999999999999999999999988777777777654  4568999999999999999999999999


Q ss_pred             CCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc-cccccCccC
Q 025275          107 RPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR-FAYSEGIRF  183 (255)
Q Consensus       107 g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~-~~~~~~~~~  183 (255)
                      +.+|++|||+|....  ..+.+.+++.+.++.|+.+++.+++++++++.+     .+.+++|++||..+. .        
T Consensus        82 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~ii~~ss~~~~~~--------  148 (251)
T PRK12826         82 GRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIR-----AGGGRIVLTSSVAGPRV--------  148 (251)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCcEEEEEechHhhcc--------
Confidence            999999999987643  345778899999999999999999999999976     346799999998765 3        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                             +.++...|+++|++++++++.++.++...|  ++++.|+||.+.|+..+..
T Consensus       149 -------~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~--i~~~~i~pg~~~~~~~~~~  197 (251)
T PRK12826        149 -------GYPGLAHYAASKAGLVGFTRALALELAARN--ITVNSVHPGGVDTPMAGNL  197 (251)
T ss_pred             -------CCCCccHHHHHHHHHHHHHHHHHHHHHHcC--eEEEEEeeCCCCcchhhhc
Confidence                   344667899999999999999999998888  9999999999999976544

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.97  E-value=4.1e-29  Score=207.72  Aligned_cols=191  Identities=26%  Similarity=0.272  Sum_probs=165.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ++.+++|++|||||+|+||++++++|+++|++|++++|+.+...+..+++...    .+.++.+|++|.+++..+++++.
T Consensus         2 ~~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~   77 (239)
T PRK12828          2 EHSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPAD----ALRIGGIDLVDPQAARRAVDEVN   77 (239)
T ss_pred             CCCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhc----CceEEEeecCCHHHHHHHHHHHH
Confidence            35578999999999999999999999999999999999987766666555432    46778899999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|++||++|...  +..+.+.+++.+.+++|+.+++.+++++++.+.+     .+.++||++||..+..      
T Consensus        78 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~iv~~sS~~~~~------  146 (239)
T PRK12828         78 RQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTA-----SGGGRIVNIGAGAALK------  146 (239)
T ss_pred             HHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHh-----cCCCEEEEECchHhcc------
Confidence            99999999999999753  2345678889999999999999999999999986     4467999999988665      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|++++.+++.++.++...+  |+++.|.||++.|++...
T Consensus       147 ---------~~~~~~~y~~sk~a~~~~~~~~a~~~~~~~--i~~~~i~pg~v~~~~~~~  194 (239)
T PRK12828        147 ---------AGPGMGAYAAAKAGVARLTEALAAELLDRG--ITVNAVLPSIIDTPPNRA  194 (239)
T ss_pred             ---------CCCCcchhHHHHHHHHHHHHHHHHHhhhcC--eEEEEEecCcccCcchhh
Confidence                     334667899999999999999999998777  999999999999997554

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.97  E-value=5.9e-29  Score=209.67  Aligned_cols=184  Identities=27%  Similarity=0.305  Sum_probs=160.5

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++|||||+|+||++++++|+++|++|++++|+.+.+++..+.+.    +.++.++++|++|.+++..+++++.+++++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG----DARFVPVACDLTDAASLAAALANAAAERGP   77 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999999999999877766665552    346889999999999999999999999999


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|++|||+|...  +..+.+.+++.+.+.+|+.+++.+++++++.+.+     .+.++||++||..+..           
T Consensus        78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~iv~~sS~~~~~-----------  141 (257)
T PRK07074         78 VDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLK-----RSRGAVVNIGSVNGMA-----------  141 (257)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCeEEEEEcchhhcC-----------
Confidence            999999999764  3445778899999999999999999999999986     4567999999976542           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                           ..+...|+.+|++++.++++++.++.+.|  |++++++||+++|++..
T Consensus       142 -----~~~~~~y~~sK~a~~~~~~~~a~~~~~~g--i~v~~v~pg~v~t~~~~  187 (257)
T PRK07074        142 -----ALGHPAYSAAKAGLIHYTKLLAVEYGRFG--IRANAVAPGTVKTQAWE  187 (257)
T ss_pred             -----CCCCcccHHHHHHHHHHHHHHHHHHhHhC--eEEEEEEeCcCCcchhh
Confidence                 11346899999999999999999999888  99999999999999754

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.97  E-value=1.3e-29  Score=200.07  Aligned_cols=161  Identities=39%  Similarity=0.489  Sum_probs=145.3

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec--cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-HVIMAVRN--MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      |++|||||++|||++++++|+++|. .|++++|+  .+..+++.+++...  +.++.++++|++++++++.+++++.+++
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            7899999999999999999999976 68888998  66778888888755  6789999999999999999999999999


Q ss_pred             CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          107 RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       107 g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      +.+|++|||+|...  +..+.+.+++.+++++|+.+++.+.|+++|   +      +.|+||++||..+..         
T Consensus        79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~---~------~~g~iv~~sS~~~~~---------  140 (167)
T PF00106_consen   79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP---Q------GGGKIVNISSIAGVR---------  140 (167)
T ss_dssp             SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH---H------TTEEEEEEEEGGGTS---------
T ss_pred             ccccccccccccccccccccccchhhhhccccccceeeeeeehhee---c------cccceEEecchhhcc---------
Confidence            99999999999875  345577899999999999999999999999   3      278999999999887         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHH
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHL  216 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~  216 (255)
                            +.+....|+++|+|+.+|+++++.|+
T Consensus       141 ------~~~~~~~Y~askaal~~~~~~la~e~  166 (167)
T PF00106_consen  141 ------GSPGMSAYSASKAALRGLTQSLAAEL  166 (167)
T ss_dssp             ------SSTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------CCCCChhHHHHHHHHHHHHHHHHHhc
Confidence                  66788999999999999999999986

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.97  E-value=1.9e-29  Score=211.80  Aligned_cols=187  Identities=24%  Similarity=0.308  Sum_probs=154.5

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc-hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      |+++||||+||||++++++|+++|++|++++|+.. .+.+    +.... +.+++++++|++|+++++.+++++.+.++.
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~----~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTK----LAEQY-NSNLTFHSLDLQDVHELETNFNEILSSIQE   76 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHH----HHhcc-CCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence            68999999999999999999999999999999863 3222    22221 457889999999999999999998776543


Q ss_pred             ----eeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          109 ----LNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       109 ----id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                          .+++|+|+|...   ++.+.+.+++.+.+++|+.+++.+++.+++++.+.    +..++||++||..+..      
T Consensus        77 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~~~~iv~~sS~~~~~------  146 (251)
T PRK06924         77 DNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDW----KVDKRVINISSGAAKN------  146 (251)
T ss_pred             ccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhcc----CCCceEEEecchhhcC------
Confidence                228999999753   35678899999999999999999999999999752    2357999999987654      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|++++++++.++.++..+..+|+|++|.||+++|++...
T Consensus       147 ---------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~  196 (251)
T PRK06924        147 ---------PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQ  196 (251)
T ss_pred             ---------CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHH
Confidence                     55677899999999999999999998644334999999999999998653

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=3.1e-29  Score=209.14  Aligned_cols=202  Identities=24%  Similarity=0.245  Sum_probs=184.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +.++||||++|||+++|.++..+|++|-++.|+..++.++..+++-...-.++.+..+|+.|++++..++++++..++.+
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~  113 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI  113 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence            68999999999999999999999999999999999999999998765444458899999999999999999999999999


Q ss_pred             eEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          110 NILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       110 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      |.+|+|||..-  .+.+.+.++++..+++|..|+++++++.++.|++.    ...|+|+.+||.++..            
T Consensus       114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~----~~~g~I~~vsS~~a~~------------  177 (331)
T KOG1210|consen  114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKR----EHLGRIILVSSQLAML------------  177 (331)
T ss_pred             ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhcc----ccCcEEEEehhhhhhc------------
Confidence            99999999763  46789999999999999999999999999999973    2246999999999887            


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCcccccceecc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFFSIS  252 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~  252 (255)
                         +..++++|+++|+|+.+|...+++|+.++|  |.|.+..|+.+.||.++..+..+|+...+.
T Consensus       178 ---~i~GysaYs~sK~alrgLa~~l~qE~i~~~--v~Vt~~~P~~~~tpGfE~En~tkP~~t~ii  237 (331)
T KOG1210|consen  178 ---GIYGYSAYSPSKFALRGLAEALRQELIKYG--VHVTLYYPPDTLTPGFERENKTKPEETKII  237 (331)
T ss_pred             ---CcccccccccHHHHHHHHHHHHHHHHhhcc--eEEEEEcCCCCCCCccccccccCchheeee
Confidence               777999999999999999999999999998  999999999999999999999999877654

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.97  E-value=1e-28  Score=206.67  Aligned_cols=191  Identities=31%  Similarity=0.395  Sum_probs=160.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      |++|||||+|+||++++++|+++|++|++. .|+.+..++..+++...  +.++.++++|++|+++++++++++.+.+++
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   79 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQA--GGKAFVLQADISDENQVVAMFTAIDQHDEP   79 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhC--CCeEEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            689999999999999999999999998774 57766666666666553  457889999999999999999999999999


Q ss_pred             eeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          109 LNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       109 id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      +|++|||+|...   +..+.+.+++..++++|+.+++.+++.+++.+.+...  ..+|++|++||..+..+.+       
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~~g~~v~~sS~~~~~~~~-------  150 (247)
T PRK09730         80 LAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHG--GSGGAIVNVSSAASRLGAP-------  150 (247)
T ss_pred             CCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC--CCCcEEEEECchhhccCCC-------
Confidence            999999999752   3456788899999999999999999999999976221  2357899999987765211       


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                             ..+..|+++|++++.+++.++.++.+.+  |++++|+||.++|++...
T Consensus       151 -------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~--i~v~~i~pg~~~~~~~~~  196 (247)
T PRK09730        151 -------GEYVDYAASKGAIDTLTTGLSLEVAAQG--IRVNCVRPGFIYTEMHAS  196 (247)
T ss_pred             -------CcccchHhHHHHHHHHHHHHHHHHHHhC--eEEEEEEeCCCcCccccc
Confidence                   1235799999999999999999998888  999999999999997543

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.97  E-value=6.7e-29  Score=205.57  Aligned_cols=183  Identities=26%  Similarity=0.307  Sum_probs=153.4

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |+++||||+|+||.+++++|+++|++|++++|+.+..++..    ..   .++.+..+|++|+++++.+++++..  +++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~----~~---~~~~~~~~D~~d~~~~~~~~~~~~~--~~i   72 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ----AL---PGVHIEKLDMNDPASLDQLLQRLQG--QRF   72 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH----hc---cccceEEcCCCCHHHHHHHHHHhhc--CCC
Confidence            78999999999999999999999999999999987654331    11   2567889999999999999998854  479


Q ss_pred             eEEEEccCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          110 NILINNAGIMA----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       110 d~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      |++|||||...    +..+.+.+++.+.+++|+.+++.+++++++++++      ..+.++++||..+....+       
T Consensus        73 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~------~~~~iv~~ss~~g~~~~~-------  139 (225)
T PRK08177         73 DLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRP------GQGVLAFMSSQLGSVELP-------  139 (225)
T ss_pred             CEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhh------cCCEEEEEccCccccccC-------
Confidence            99999999763    2456778899999999999999999999999875      247899999977654211       


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                           +..+...|+++|+++++++++++.++.+++  |++|+|+||+++|++....
T Consensus       140 -----~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~--i~v~~i~PG~i~t~~~~~~  188 (225)
T PRK08177        140 -----DGGEMPLYKASKAALNSMTRSFVAELGEPT--LTVLSMHPGWVKTDMGGDN  188 (225)
T ss_pred             -----CCCCccchHHHHHHHHHHHHHHHHHhhcCC--eEEEEEcCCceecCCCCCC
Confidence                 223566899999999999999999999887  9999999999999986543

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.97  E-value=3.3e-28  Score=203.26  Aligned_cols=193  Identities=33%  Similarity=0.399  Sum_probs=164.4

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      +.+++|++|||||+|+||++++++|+++|++|+++.|+.+. .....+++...  +.++.++.+|+++.+++..+++++.
T Consensus         1 ~~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~   78 (248)
T PRK05557          1 MSLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGAL--GGKALAVQGDVSDAESVERAVDEAK   78 (248)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999888877653 45555555443  5678999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|++||++|....  ..+.+.+.+.+.+++|+.+++++++.+.+.+.+     .+.+++|++||..+..      
T Consensus        79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~~v~iss~~~~~------  147 (248)
T PRK05557         79 AEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMK-----QRSGRIINISSVVGLM------  147 (248)
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCeEEEEEcccccCc------
Confidence            888999999999997643  345678899999999999999999999999976     4457899999987665      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++...|+.+|++++++++.++.++...+  |++++++||+++|++.+..
T Consensus       148 ---------~~~~~~~y~~sk~a~~~~~~~~a~~~~~~~--i~~~~v~pg~~~~~~~~~~  196 (248)
T PRK05557        148 ---------GNPGQANYAASKAGVIGFTKSLARELASRG--ITVNAVAPGFIETDMTDAL  196 (248)
T ss_pred             ---------CCCCCchhHHHHHHHHHHHHHHHHHhhhhC--eEEEEEecCccCCcccccc
Confidence                     334567899999999999999999998887  9999999999999876543

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.97  E-value=7e-29  Score=201.70  Aligned_cols=160  Identities=19%  Similarity=0.222  Sum_probs=141.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      +++||||++|||++++++|+++ ++|++++|+..                   .+++|++|+++++.++++    ++++|
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-------------------~~~~D~~~~~~~~~~~~~----~~~id   57 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-------------------DVQVDITDPASIRALFEK----VGKVD   57 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-------------------ceEecCCChHHHHHHHHh----cCCCC
Confidence            6999999999999999999999 99999998752                   368999999999998876    36899


Q ss_pred             EEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          111 ILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       111 ~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      ++|||||...  +..+.+.++|.+.+++|+.+++++++++.|+|.+       .|+|+++||..+..             
T Consensus        58 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-------~g~iv~iss~~~~~-------------  117 (199)
T PRK07578         58 AVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLND-------GGSFTLTSGILSDE-------------  117 (199)
T ss_pred             EEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCeEEEEcccccCC-------------
Confidence            9999999753  3446788999999999999999999999999965       47999999988654             


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                        +.++...|+++|+++++|+++++.|+ +.|  |++|+|+||+++|++..
T Consensus       118 --~~~~~~~Y~~sK~a~~~~~~~la~e~-~~g--i~v~~i~Pg~v~t~~~~  163 (199)
T PRK07578        118 --PIPGGASAATVNGALEGFVKAAALEL-PRG--IRINVVSPTVLTESLEK  163 (199)
T ss_pred             --CCCCchHHHHHHHHHHHHHHHHHHHc-cCC--eEEEEEcCCcccCchhh
Confidence              45577899999999999999999999 777  99999999999999753

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.97  E-value=1.5e-28  Score=204.16  Aligned_cols=177  Identities=29%  Similarity=0.371  Sum_probs=152.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+|+++||||+|+||++++++|+++|++|++++|+.+..          .   ...++++|++|+++++.+++++.+.+ 
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~----------~---~~~~~~~D~~~~~~~~~~~~~~~~~~-   67 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD----------F---PGELFACDLADIEQTAATLAQINEIH-   67 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc----------c---CceEEEeeCCCHHHHHHHHHHHHHhC-
Confidence            578999999999999999999999999999999987530          1   12478999999999999999988876 


Q ss_pred             CeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          108 PLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       108 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      ++|++|||+|...  +..+.+.+++.+.+++|+.+++.+++++++.+++     .+.++||++||... .          
T Consensus        68 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~-~----------  131 (234)
T PRK07577         68 PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKL-----REQGRIVNICSRAI-F----------  131 (234)
T ss_pred             CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCcEEEEEccccc-c----------
Confidence            5899999999764  3445678999999999999999999999999987     34679999999753 2          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                           +.+....|+++|+++++++++++.++.+.|  |++++|+||+++|++++..
T Consensus       132 -----~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~g--i~v~~i~pg~~~t~~~~~~  180 (234)
T PRK07577        132 -----GALDRTSYSAAKSALVGCTRTWALELAEYG--ITVNAVAPGPIETELFRQT  180 (234)
T ss_pred             -----CCCCchHHHHHHHHHHHHHHHHHHHHHhhC--cEEEEEecCcccCcccccc
Confidence                 223567899999999999999999999888  9999999999999987643

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.97  E-value=1.9e-28  Score=204.87  Aligned_cols=185  Identities=32%  Similarity=0.390  Sum_probs=156.3

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .++++++++++||||+|+||+++++.|+++|++|++++|+.+++++..++.       ...++.+|+++.+++..++++ 
T Consensus         3 ~~~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~~-   74 (245)
T PRK07060          3 MAFDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET-------GCEPLRLDVGDDAAIRAALAA-   74 (245)
T ss_pred             cccccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCeEEEecCCCHHHHHHHHHH-
Confidence            446688999999999999999999999999999999999877655444332       256788999999988888776 


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                         .+++|++|||+|...  +..+.+.+++++.+++|+.+++.+++++++.+.+.    +..++||++||..+..     
T Consensus        75 ---~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~~~~iv~~sS~~~~~-----  142 (245)
T PRK07060         75 ---AGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAA----GRGGSIVNVSSQAALV-----  142 (245)
T ss_pred             ---hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc----CCCcEEEEEccHHHcC-----
Confidence               467999999999763  33457788999999999999999999999998752    2247999999988765     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                +.++...|+.+|++++.+++.++.++.+.+  |++++|+||.+.|++.+
T Consensus       143 ----------~~~~~~~y~~sK~a~~~~~~~~a~~~~~~~--i~v~~v~pg~v~~~~~~  189 (245)
T PRK07060        143 ----------GLPDHLAYCASKAALDAITRVLCVELGPHG--IRVNSVNPTVTLTPMAA  189 (245)
T ss_pred             ----------CCCCCcHhHHHHHHHHHHHHHHHHHHhhhC--eEEEEEeeCCCCCchhh
Confidence                      444667899999999999999999998877  99999999999999754

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.97  E-value=1.6e-28  Score=206.88  Aligned_cols=181  Identities=28%  Similarity=0.336  Sum_probs=154.9

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++|||||+|+||++++++|+++|++|++++|+.+...+..+.....  +.++.++.+|++|++++..++.      ++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~------~~   73 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR--GLALRVEKLDLTDAIDRAQAAE------WD   73 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeeCCCHHHHHHHhc------CC
Confidence            578999999999999999999999999999999887766665554443  4468899999999998877654      37


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|+||||||...  +..+.+.+++++.+++|+.+++.+++.+++.+.+     .+.++||++||..+..           
T Consensus        74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~iv~~SS~~~~~-----------  137 (257)
T PRK09291         74 VDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVA-----RGKGKVVFTSSMAGLI-----------  137 (257)
T ss_pred             CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCceEEEEcChhhcc-----------
Confidence            999999999763  4566788999999999999999999999999986     3457999999987765           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                          +.++...|+++|++++.+++.++.++.+.|  |++++|+||++.|++.+
T Consensus       138 ----~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~g--i~~~~v~pg~~~t~~~~  184 (257)
T PRK09291        138 ----TGPFTGAYCASKHALEAIAEAMHAELKPFG--IQVATVNPGPYLTGFND  184 (257)
T ss_pred             ----CCCCcchhHHHHHHHHHHHHHHHHHHHhcC--cEEEEEecCcccccchh
Confidence                334567899999999999999999998888  99999999999998754

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.96  E-value=4.1e-28  Score=202.40  Aligned_cols=190  Identities=33%  Similarity=0.380  Sum_probs=166.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++.+|++|||||+|+||++++++|+++|++|++++|+.++.+...+.+...  +.++.++.+|++|++++..+++++.+.
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA--GGEARVLVFDVSDEAAVRALIEAAVEA   79 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            566789999999999999999999999999999999988877777766654  567899999999999999999999888


Q ss_pred             CCCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++.+|++||++|....  ..+.+.+++.+.++.|+.+++++++++.+++.+     .+.++||++||..+..        
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~-----~~~~~ii~~ss~~~~~--------  146 (246)
T PRK05653         80 FGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIK-----ARYGRIVNISSVSGVT--------  146 (246)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEECcHHhcc--------
Confidence            8999999999987643  345678899999999999999999999999976     3457999999987654        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                             +..+...|+.+|++++.++++++.++.+.+  ++++.|+||.+.+++..
T Consensus       147 -------~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~--i~~~~i~pg~~~~~~~~  193 (246)
T PRK05653        147 -------GNPGQTNYSAAKAGVIGFTKALALELASRG--ITVNAVAPGFIDTDMTE  193 (246)
T ss_pred             -------CCCCCcHhHhHHHHHHHHHHHHHHHHhhcC--eEEEEEEeCCcCCcchh
Confidence                   334567899999999999999999988777  99999999999998765

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.96  E-value=3.6e-28  Score=204.25  Aligned_cols=187  Identities=29%  Similarity=0.311  Sum_probs=163.2

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++|||||+|+||++++++|+++|++|++++|+.+..+...+++...  +.++.++.+|++|.++++.+++++.+.+++
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA--GGSVIYLVADVTKEDEIADMIAAAAAEFGG   78 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999999999999988777777766543  457899999999999999999999988889


Q ss_pred             eeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|++|||+|....  ..+.+.+++.++++.|+.+++.+++.+++.+.+     ...+++|++||..+..           
T Consensus        79 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-----~~~~~~v~~ss~~~~~-----------  142 (255)
T TIGR01963        79 LDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKK-----QGWGRIINIASAHGLV-----------  142 (255)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCeEEEEEcchhhcC-----------
Confidence            9999999997642  345677889999999999999999999999976     4467999999987654           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                          +.+....|+.+|+++++++++++.++...+  |+++.++||.+.|++..
T Consensus       143 ----~~~~~~~y~~sk~a~~~~~~~~~~~~~~~~--i~v~~i~pg~v~~~~~~  189 (255)
T TIGR01963       143 ----ASPFKSAYVAAKHGLIGLTKVLALEVAAHG--ITVNAICPGYVRTPLVE  189 (255)
T ss_pred             ----CCCCCchhHHHHHHHHHHHHHHHHHhhhcC--eEEEEEecCccccHHHH
Confidence                344567899999999999999999988777  99999999999998753

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.96  E-value=1.3e-28  Score=204.83  Aligned_cols=181  Identities=23%  Similarity=0.298  Sum_probs=144.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      |+++||||++|||++++++|+++|  ..|++..|+...  +        ..+.++.++++|+++.++++.+.+    +++
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~--~--------~~~~~~~~~~~Dls~~~~~~~~~~----~~~   66 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKP--D--------FQHDNVQWHALDVTDEAEIKQLSE----QFT   66 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCcc--c--------cccCceEEEEecCCCHHHHHHHHH----hcC
Confidence            479999999999999999999986  566666665432  1        113478899999999998887544    457


Q ss_pred             CeeEEEEccCCCCC--------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          108 PLNILINNAGIMAS--------PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       108 ~id~lv~~ag~~~~--------~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      ++|++|||||....        ..+.+.+.+.+.+++|+.+++.+++.++|.|.+     .+.++++++||..+...   
T Consensus        67 ~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~-----~~~~~i~~iss~~~~~~---  138 (235)
T PRK09009         67 QLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQ-----SESAKFAVISAKVGSIS---  138 (235)
T ss_pred             CCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccc-----cCCceEEEEeecccccc---
Confidence            89999999998631        345677889999999999999999999999976     44579999998665431   


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               ..+.+++..|+++|+++.+|+++++.|+.+...+|+||+|+||+++|++.+..
T Consensus       139 ---------~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~  191 (235)
T PRK09009        139 ---------DNRLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPF  191 (235)
T ss_pred             ---------cCCCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcch
Confidence                     11334567999999999999999999998743349999999999999987653

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.96  E-value=8.5e-29  Score=207.55  Aligned_cols=189  Identities=25%  Similarity=0.262  Sum_probs=154.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc-hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+ ..+...+++...  +.++.++++|++|++++..+++++.+
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA--GGRASAVGADLTDEESVAALMDTARE   80 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999754 455555556543  45688999999999999999999998


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      .++.+|++|||||.....    ..++.+.+++|+.+++++++++.+++.+       .+++|++||..+.....      
T Consensus        81 ~~~~~d~vi~~ag~~~~~----~~~~~~~~~vn~~~~~~l~~~~~~~~~~-------~~~iv~isS~~~~~~~~------  143 (248)
T PRK07806         81 EFGGLDALVLNASGGMES----GMDEDYAMRLNRDAQRNLARAALPLMPA-------GSRVVFVTSHQAHFIPT------  143 (248)
T ss_pred             hCCCCcEEEECCCCCCCC----CCCcceeeEeeeHHHHHHHHHHHhhccC-------CceEEEEeCchhhcCcc------
Confidence            899999999999864221    1234567899999999999999998853       47999999965432100      


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                          ..+.+.+..|+.+|++++.+++.++.+++..+  |++|+|.||++.|++..
T Consensus       144 ----~~~~~~~~~Y~~sK~a~e~~~~~l~~~~~~~~--i~v~~v~pg~~~~~~~~  192 (248)
T PRK07806        144 ----VKTMPEYEPVARSKRAGEDALRALRPELAEKG--IGFVVVSGDMIEGTVTA  192 (248)
T ss_pred             ----ccCCccccHHHHHHHHHHHHHHHHHHHhhccC--eEEEEeCCccccCchhh
Confidence                01233467899999999999999999999888  99999999999998654

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.96  E-value=1.9e-28  Score=222.63  Aligned_cols=190  Identities=30%  Similarity=0.345  Sum_probs=159.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .++++++|||||++|||++++++|+++|++|+++++....  +..+++....   ...++.+|++|+++++.+++++.+.
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~--~~l~~~~~~~---~~~~~~~Dv~~~~~~~~~~~~~~~~  281 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAG--EALAAVANRV---GGTALALDITAPDAPARIAEHLAER  281 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccH--HHHHHHHHHc---CCeEEEEeCCCHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999999999885321  1222222221   2357899999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++++|++|||||+..  ...+.+.+.|..++++|+.+++++++++.+.+..     ++.++||++||..+..        
T Consensus       282 ~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-----~~~g~iv~~SS~~~~~--------  348 (450)
T PRK08261        282 HGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGAL-----GDGGRIVGVSSISGIA--------  348 (450)
T ss_pred             CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhh-----cCCCEEEEECChhhcC--------
Confidence            999999999999764  3456788999999999999999999999996554     3468999999988765        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                             +.+++..|+++|+++++|+++++.++..+|  |++|+|+||.++|++.....
T Consensus       349 -------g~~~~~~Y~asKaal~~~~~~la~el~~~g--i~v~~v~PG~i~t~~~~~~~  398 (450)
T PRK08261        349 -------GNRGQTNYAASKAGVIGLVQALAPLLAERG--ITINAVAPGFIETQMTAAIP  398 (450)
T ss_pred             -------CCCCChHHHHHHHHHHHHHHHHHHHHhhhC--cEEEEEEeCcCcchhhhccc
Confidence                   444678999999999999999999999988  99999999999999876543

>PRK09135 pteridine reductase; Provisional

Probab=99.96  E-value=6e-28  Score=202.05  Aligned_cols=189  Identities=20%  Similarity=0.268  Sum_probs=157.6

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc-hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ..+++++|||||+|+||++++++|+++|++|++++|+.+ ..+...+.+.... +..+.++.+|++|++++..+++++.+
T Consensus         3 ~~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~   81 (249)
T PRK09135          3 TDSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALR-PGSAAALQADLLDPDALPELVAACVA   81 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            356789999999999999999999999999999998643 3444444444332 34688999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|++|||||...  +..+.+.+++.+++++|+.+++++++++.+++.+      ..+.+++++|..+..       
T Consensus        82 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~-------  148 (249)
T PRK09135         82 AFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRK------QRGAIVNITDIHAER-------  148 (249)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhh------CCeEEEEEeChhhcC-------
Confidence            9999999999999753  3445677889999999999999999999999875      357888887754332       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                              +.++...|+.+|++++.++++++.++.+ +  |+++++.||++.|+...
T Consensus       149 --------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~-~--i~~~~v~pg~~~~~~~~  194 (249)
T PRK09135        149 --------PLKGYPVYCAAKAALEMLTRSLALELAP-E--VRVNAVAPGAILWPEDG  194 (249)
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHHHCC-C--CeEEEEEeccccCcccc
Confidence                    5567789999999999999999999865 4  99999999999999754

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.96  E-value=1.1e-28  Score=206.39  Aligned_cols=181  Identities=28%  Similarity=0.347  Sum_probs=152.4

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH-HhcCC--
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE-YNSQG--  106 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~-~~~~~--  106 (255)
                      +++|||||+||||++++++|+++|++|++++|+.+..  .    ... .+.++.++++|++|.++++.++.+ +.+.+  
T Consensus         2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~--~----~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   74 (243)
T PRK07023          2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS--L----AAA-AGERLAEVELDLSDAAAAAAWLAGDLLAAFVD   74 (243)
T ss_pred             ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh--h----hhc-cCCeEEEEEeccCCHHHHHHHHHHHHHHHhcc
Confidence            4799999999999999999999999999999986531  1    111 245788999999999999998876 54433  


Q ss_pred             -CCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          107 -RPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       107 -g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                       +++|++|||+|...   +..+.+.+++++.+++|+.+++.+++.+.+.+.+     ...++||++||..+..       
T Consensus        75 ~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~-------  142 (243)
T PRK07023         75 GASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASD-----AAERRILHISSGAARN-------  142 (243)
T ss_pred             CCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhc-----cCCCEEEEEeChhhcC-------
Confidence             47999999999753   3445688999999999999999999999999986     4568999999987664       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.+++..|+++|++++++++.++.+ ...+  |++++|+||+++|++.+.
T Consensus       143 --------~~~~~~~Y~~sK~a~~~~~~~~~~~-~~~~--i~v~~v~pg~~~t~~~~~  189 (243)
T PRK07023        143 --------AYAGWSVYCATKAALDHHARAVALD-ANRA--LRIVSLAPGVVDTGMQAT  189 (243)
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHhc-CCCC--cEEEEecCCccccHHHHH
Confidence                    5557789999999999999999999 6666  999999999999998653

>PRK08264 short chain dehydrogenase; Validated

Probab=99.96  E-value=8.8e-28  Score=200.18  Aligned_cols=182  Identities=30%  Similarity=0.391  Sum_probs=157.5

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      +.+++++++||||+|+||++++++|+++|+ +|++++|+.+.+++       .  +.++.++.+|++|.+++++++++. 
T Consensus         2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~--~~~~~~~~~D~~~~~~~~~~~~~~-   71 (238)
T PRK08264          2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------L--GPRVVPLQLDVTDPASVAAAAEAA-   71 (238)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------c--CCceEEEEecCCCHHHHHHHHHhc-
Confidence            567889999999999999999999999999 99999998765433       1  457899999999999998888753 


Q ss_pred             cCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          104 SQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                         +++|++||++|...   +..+.+.+++.+.+++|+.+++.+++++.+.+++     ...+++|++||..+..     
T Consensus        72 ---~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~~v~~sS~~~~~-----  138 (238)
T PRK08264         72 ---SDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAA-----NGGGAIVNVLSVLSWV-----  138 (238)
T ss_pred             ---CCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCEEEEEcChhhcc-----
Confidence               57999999999832   3456788999999999999999999999999986     4567999999988654     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                +.++...|+.+|++++++++.++.++.+.+  ++++++.||.++|++....
T Consensus       139 ----------~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~--i~~~~v~pg~v~t~~~~~~  187 (238)
T PRK08264        139 ----------NFPNLGTYSASKAAAWSLTQALRAELAPQG--TRVLGVHPGPIDTDMAAGL  187 (238)
T ss_pred             ----------CCCCchHhHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeCCcccccccccC
Confidence                      445667899999999999999999998887  9999999999999986543

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.96  E-value=1.5e-27  Score=199.19  Aligned_cols=192  Identities=31%  Similarity=0.389  Sum_probs=162.4

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .+++|++|||||+|+||++++++|+++|++|++..|+... .+...+.+...  +.++.++.+|++|++++..+++++.+
T Consensus         3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~   80 (249)
T PRK12825          3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEAL--GRRAQAVQADVTDKAALEAAVAAAVE   80 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCcCCHHHHHHHHHHHHH
Confidence            3556899999999999999999999999998887766543 33444444443  45789999999999999999999988


Q ss_pred             CCCCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++.+|++||++|...+  ..+.+.+.+.+.+++|+.+++++++.+.+++.+     .+.+++|++||..+..       
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~~i~~SS~~~~~-------  148 (249)
T PRK12825         81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRK-----QRGGRIVNISSVAGLP-------  148 (249)
T ss_pred             HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCCEEEEECccccCC-------
Confidence            88899999999996543  345678899999999999999999999999987     3467999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +..+...|+.+|++++++++.++.++...+  ++++.|+||.+.|++....
T Consensus       149 --------~~~~~~~y~~sK~~~~~~~~~~~~~~~~~~--i~~~~i~pg~~~~~~~~~~  197 (249)
T PRK12825        149 --------GWPGRSNYAAAKAGLVGLTKALARELAEYG--ITVNMVAPGDIDTDMKEAT  197 (249)
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHHhhcC--eEEEEEEECCccCCccccc
Confidence                    344667899999999999999999998877  9999999999999986543

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.96  E-value=9.5e-28  Score=202.79  Aligned_cols=190  Identities=31%  Similarity=0.342  Sum_probs=162.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ..++++++|||||+|+||++++++|+++|++|++++|+.+..++..+...    ..++.++.+|++|++++..+++++.+
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP----GAKVTATVADVADPAQVERVFDTAVE   82 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh----cCceEEEEccCCCHHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999998776665544442    22678999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CeEEEecCCccccccccC
Q 025275          105 QGRPLNILINNAGIMAS---PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSRE-GRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~---~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~-g~ii~vsS~~~~~~~~~~  180 (255)
                      .++++|+|||++|...+   ....+.+.+.+++++|+.+++.+++.+++.+.+     .+. ++|+++||..+..     
T Consensus        83 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~~vv~~ss~~~~~-----  152 (264)
T PRK12829         83 RFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKA-----SGHGGVIIALSSVAGRL-----  152 (264)
T ss_pred             HhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----CCCCeEEEEeccccccc-----
Confidence            89999999999997622   345678899999999999999999999998876     233 6799999877654     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +.+....|+.+|++++.+++.++.++...+  +++++|.||++.|++...
T Consensus       153 ----------~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~--i~~~~l~pg~v~~~~~~~  200 (264)
T PRK12829        153 ----------GYPGRTPYAASKWAVVGLVKSLAIELGPLG--IRVNAILPGIVRGPRMRR  200 (264)
T ss_pred             ----------CCCCCchhHHHHHHHHHHHHHHHHHHhhcC--eEEEEEecCCcCChHHHH
Confidence                      344567899999999999999999998777  999999999999998654

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.96  E-value=1.1e-27  Score=199.59  Aligned_cols=187  Identities=21%  Similarity=0.190  Sum_probs=158.8

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++|+++||||+|+||.++++.|+++|++|++++|+.+..++..+.+..   ..+++++++|++++++++.+++++.+.
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~   78 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK---YGNIHYVVGDVSSTESARNVIEKAAKV   78 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999998777665555543   236889999999999999999999888


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      ++++|.+|+++|........+.+.+.+++++|+.+++.+++.++|.+.+       .+++|++||..+...         
T Consensus        79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-------~~~iv~~ss~~~~~~---------  142 (238)
T PRK05786         79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKE-------GSSIVLVSSMSGIYK---------  142 (238)
T ss_pred             hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-------CCEEEEEecchhccc---------
Confidence            8899999999986543222344788999999999999999999999864       579999999765321         


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                           +.+....|+.+|+++..+++.++.++...+  |+++.|+||++.|++.
T Consensus       143 -----~~~~~~~Y~~sK~~~~~~~~~~~~~~~~~g--i~v~~i~pg~v~~~~~  188 (238)
T PRK05786        143 -----ASPDQLSYAVAKAGLAKAVEILASELLGRG--IRVNGIAPTTISGDFE  188 (238)
T ss_pred             -----CCCCchHHHHHHHHHHHHHHHHHHHHhhcC--eEEEEEecCccCCCCC
Confidence                 234557899999999999999999998888  9999999999999864

>PRK08324 short chain dehydrogenase; Validated

Probab=99.96  E-value=1.8e-27  Score=225.88  Aligned_cols=190  Identities=29%  Similarity=0.386  Sum_probs=167.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+.||++|||||+|+||++++++|+++|++|++++|+.+.++...+++...   .++.++.+|++|++++..+++++.+.
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~  495 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA  495 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999988877776666442   46889999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|++|||||...  +..+.+.++|...+++|+.+++.+++++.+.++++    +.+|+||++||..+..        
T Consensus       496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~----~~~g~iV~vsS~~~~~--------  563 (681)
T PRK08324        496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQ----GLGGSIVFIASKNAVN--------  563 (681)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc----CCCcEEEEECCccccC--------
Confidence            999999999999763  35567899999999999999999999999999862    2248999999988765        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCce--ecCccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSI--VTNLFR  239 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v--~t~~~~  239 (255)
                             +.++...|+++|+++++++++++.++.+.|  |++|.|+||.+  .|+++.
T Consensus       564 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--Irvn~v~Pg~v~~~t~~~~  612 (681)
T PRK08324        564 -------PGPNFGAYGAAKAAELHLVRQLALELGPDG--IRVNGVNPDAVVRGSGIWT  612 (681)
T ss_pred             -------CCCCcHHHHHHHHHHHHHHHHHHHHhcccC--eEEEEEeCceeecCCcccc
Confidence                   445678999999999999999999999888  99999999999  787653

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.96  E-value=6e-27  Score=194.83  Aligned_cols=185  Identities=35%  Similarity=0.439  Sum_probs=159.0

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      +||||++|+||.+++++|+++|++|++++|+. +..+...+.+...  +.++.++.+|++|+++++.+++++.+.++++|
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAY--GVKALGVVCDVSDREDVKAVVEEIEEELGPID   78 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            58999999999999999999999999999875 4445555555443  45789999999999999999999999899999


Q ss_pred             EEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          111 ILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       111 ~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      ++||++|...  +..+.+.+.+++.+++|+.+++++++.+.+++.+     ...+++|++||..+..             
T Consensus        79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~~v~~sS~~~~~-------------  140 (239)
T TIGR01830        79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIK-----QRSGRIINISSVVGLM-------------  140 (239)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCeEEEEECCccccC-------------
Confidence            9999999763  2345677899999999999999999999999976     3467999999988766             


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                        +.++...|+.+|++++.+++.++.++...|  +++++++||.++|++...
T Consensus       141 --g~~~~~~y~~~k~a~~~~~~~l~~~~~~~g--~~~~~i~pg~~~~~~~~~  188 (239)
T TIGR01830       141 --GNAGQANYAASKAGVIGFTKSLAKELASRN--ITVNAVAPGFIDTDMTDK  188 (239)
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHHhhcC--eEEEEEEECCCCChhhhh
Confidence              334567899999999999999999998887  999999999999987644

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.96  E-value=1.8e-27  Score=197.33  Aligned_cols=173  Identities=25%  Similarity=0.265  Sum_probs=147.3

Q ss_pred             EEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeEE
Q 025275           33 IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNIL  112 (255)
Q Consensus        33 lItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~l  112 (255)
                      |||||+++||++++++|+++|++|++++|+.+.++...+.+..   +.+++++.+|++|++++..+++++    +++|++
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~----~~id~l   73 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFAEA----GPFDHV   73 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHhc----CCCCEE
Confidence            6999999999999999999999999999998776666655542   457889999999999999988864    689999


Q ss_pred             EEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc
Q 025275          113 INNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES  190 (255)
Q Consensus       113 v~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~  190 (255)
                      |||+|...  ++.+.+.+++++++++|+.+++++++  .+.+.       +.++||++||..+..               
T Consensus        74 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~~-------~~g~iv~~ss~~~~~---------------  129 (230)
T PRK07041         74 VITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR--AARIA-------PGGSLTFVSGFAAVR---------------  129 (230)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh--hhhhc-------CCeEEEEECchhhcC---------------
Confidence            99999763  34567889999999999999999999  33442       358999999988765               


Q ss_pred             CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          191 AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       191 ~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      +.++...|+++|+++++++++++.++..    |++|+++||+++|+++..
T Consensus       130 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~----irv~~i~pg~~~t~~~~~  175 (230)
T PRK07041        130 PSASGVLQGAINAALEALARGLALELAP----VRVNTVSPGLVDTPLWSK  175 (230)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHhhC----ceEEEEeecccccHHHHh
Confidence            4456778999999999999999999863    999999999999998654

>PRK08017 oxidoreductase; Provisional

Probab=99.95  E-value=2e-26  Score=193.95  Aligned_cols=181  Identities=34%  Similarity=0.393  Sum_probs=155.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC-CCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ-GRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~-~g~  108 (255)
                      |+++||||+|+||++++++|+++|++|++++|+.++++...    ..    .+.++.+|++|.+++..+++++... .+.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~----~~----~~~~~~~D~~~~~~~~~~~~~i~~~~~~~   74 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN----SL----GFTGILLDLDDPESVERAADEVIALTDNR   74 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH----hC----CCeEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence            78999999999999999999999999999999976654332    21    3678999999999999999988764 368


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|.+|||+|...  +..+.+.+++++.+++|+.|++++++.+++.+.+     .+.++||++||..+..           
T Consensus        75 ~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-----~~~~~iv~~ss~~~~~-----------  138 (256)
T PRK08017         75 LYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLP-----HGEGRIVMTSSVMGLI-----------  138 (256)
T ss_pred             CeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhh-----cCCCEEEEEcCccccc-----------
Confidence            999999999653  3456788899999999999999999999999986     4467999999987665           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                          +.+....|+++|++++.++++++.++...+  +++++|+||.+.|++...
T Consensus       139 ----~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~--i~v~~v~pg~~~t~~~~~  186 (256)
T PRK08017        139 ----STPGRGAYAASKYALEAWSDALRMELRHSG--IKVSLIEPGPIRTRFTDN  186 (256)
T ss_pred             ----CCCCccHHHHHHHHHHHHHHHHHHHHhhcC--CEEEEEeCCCcccchhhc
Confidence                344667899999999999999999998888  999999999999987654

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.95  E-value=2.6e-26  Score=189.66  Aligned_cols=181  Identities=25%  Similarity=0.284  Sum_probs=147.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |+++||||+|+||.+++++|+++|++|++++|+.+..++.    ...    .+.++++|+++.++++.+++++..  +++
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~----~~~----~~~~~~~D~~~~~~v~~~~~~~~~--~~~   71 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAAL----QAL----GAEALALDVADPASVAGLAWKLDG--EAL   71 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHH----Hhc----cceEEEecCCCHHHHHHHHHHhcC--CCC
Confidence            6899999999999999999999999999999987654332    222    356899999999999998877643  479


Q ss_pred             eEEEEccCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          110 NILINNAGIMA----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       110 d~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      |++|||+|...    +..+.+.+++++.+++|+.+++++++++++++.+      ..|++|++||..+..+..       
T Consensus        72 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~------~~g~iv~isS~~~~~~~~-------  138 (222)
T PRK06953         72 DAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEA------AGGVLAVLSSRMGSIGDA-------  138 (222)
T ss_pred             CEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhc------cCCeEEEEcCcccccccc-------
Confidence            99999999863    2345688999999999999999999999998864      357899999987665311       


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                           +......|+++|++++++++.++.++.  +  +++|+|+||+++|++.+..+
T Consensus       139 -----~~~~~~~Y~~sK~a~~~~~~~~~~~~~--~--i~v~~v~Pg~i~t~~~~~~~  186 (222)
T PRK06953        139 -----TGTTGWLYRASKAALNDALRAASLQAR--H--ATCIALHPGWVRTDMGGAQA  186 (222)
T ss_pred             -----cCCCccccHHhHHHHHHHHHHHhhhcc--C--cEEEEECCCeeecCCCCCCC
Confidence                 111223699999999999999988763  4  99999999999999976543

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.95  E-value=1.9e-26  Score=193.47  Aligned_cols=182  Identities=21%  Similarity=0.166  Sum_probs=135.2

Q ss_pred             cccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           21 VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        21 ~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      ++....+++|+++||||+||||++++++|+++|++|++++|+.....+   .. ..  . ...++.+|++|.+++...  
T Consensus         6 ~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~---~~-~~--~-~~~~~~~D~~~~~~~~~~--   76 (245)
T PRK12367          6 PMAQSTWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSE---SN-DE--S-PNEWIKWECGKEESLDKQ--   76 (245)
T ss_pred             hhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhh---hh-cc--C-CCeEEEeeCCCHHHHHHh--
Confidence            445566789999999999999999999999999999999998632111   11 11  1 236789999999877643  


Q ss_pred             HHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          101 EYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                           ++++|++|||||.... .+.+.+++.+.+++|+.++++++++++|.|.++..  ..++.++..||.++..     
T Consensus        77 -----~~~iDilVnnAG~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--~~g~~iiv~ss~a~~~-----  143 (245)
T PRK12367         77 -----LASLDVLILNHGINPG-GRQDPENINKALEINALSSWRLLELFEDIALNNNS--QIPKEIWVNTSEAEIQ-----  143 (245)
T ss_pred             -----cCCCCEEEECCccCCc-CCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc--CCCeEEEEEecccccC-----
Confidence                 4679999999997533 34678999999999999999999999999975210  1233454555554432     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHH----HHhhCCCcEEEEEeeCCceecCcc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAK----HLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~----~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                                + +....|++||+|+..+. +++.    ++.+.+  +++++++||+++|++.
T Consensus       144 ----------~-~~~~~Y~aSKaal~~~~-~l~~~l~~e~~~~~--i~v~~~~pg~~~t~~~  191 (245)
T PRK12367        144 ----------P-ALSPSYEISKRLIGQLV-SLKKNLLDKNERKK--LIIRKLILGPFRSELN  191 (245)
T ss_pred             ----------C-CCCchhHHHHHHHHHHH-HHHHHHHHhhcccc--cEEEEecCCCcccccC
Confidence                      2 23567999999986543 4554    445566  9999999999999974

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=99.94  E-value=1.9e-25  Score=178.55  Aligned_cols=185  Identities=17%  Similarity=0.192  Sum_probs=164.4

Q ss_pred             CCCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        25 ~~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..++||++||+|-.  ..|+.+||+.|.++|+++++++.++ ++.+..+++.+..  +....++||++++++++.+|.++
T Consensus         2 g~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~--~s~~v~~cDV~~d~~i~~~f~~i   78 (259)
T COG0623           2 GLLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEEL--GSDLVLPCDVTNDESIDALFATI   78 (259)
T ss_pred             CccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhc--cCCeEEecCCCCHHHHHHHHHHH
Confidence            56899999999976  7899999999999999999999987 6777777776653  24678999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275          103 NSQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      .+++|.+|.|||+-++.+      .+.+.+-+.|...+++...+..-++|++.|.|..       +|+||.++-..+.. 
T Consensus        79 ~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~-------ggSiltLtYlgs~r-  150 (259)
T COG0623          79 KKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNN-------GGSILTLTYLGSER-  150 (259)
T ss_pred             HHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCC-------CCcEEEEEecccee-
Confidence            999999999999999774      3557888999999999999999999999999964       88999998777655 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                                    ..|.+...+.+|++++.-+|.+|.++.++|  ||||.|+-|+|+|=
T Consensus       151 --------------~vPnYNvMGvAKAaLEasvRyLA~dlG~~g--IRVNaISAGPIrTL  194 (259)
T COG0623         151 --------------VVPNYNVMGVAKAALEASVRYLAADLGKEG--IRVNAISAGPIRTL  194 (259)
T ss_pred             --------------ecCCCchhHHHHHHHHHHHHHHHHHhCccC--eEEeeecccchHHH
Confidence                          455677899999999999999999999999  99999999999993

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.1e-23  Score=174.04  Aligned_cols=176  Identities=26%  Similarity=0.353  Sum_probs=146.9

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      .|++|||||+|+||++++++|+++ ++|++++|+.+..++..+..      ..+.++++|++|+++++.+++++    ++
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~----~~   71 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAEL------PGATPFPVDLTDPEAIAAAVEQL----GR   71 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHh------ccceEEecCCCCHHHHHHHHHhc----CC
Confidence            478999999999999999999999 99999999876544333221      24788999999999999888764    47


Q ss_pred             eeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|++||++|....  ..+.+.+++.+++++|+.+++.+++.+++.+.+      ..+++|++||..+..           
T Consensus        72 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~------~~~~~v~~ss~~~~~-----------  134 (227)
T PRK08219         72 LDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRA------AHGHVVFINSGAGLR-----------  134 (227)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh------CCCeEEEEcchHhcC-----------
Confidence            9999999997642  345678899999999999999999999999986      257999999987654           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                          +.++...|+.+|++++++++.++.++...   |++++|.||.+.|++..
T Consensus       135 ----~~~~~~~y~~~K~a~~~~~~~~~~~~~~~---i~~~~i~pg~~~~~~~~  180 (227)
T PRK08219        135 ----ANPGWGSYAASKFALRALADALREEEPGN---VRVTSVHPGRTDTDMQR  180 (227)
T ss_pred             ----cCCCCchHHHHHHHHHHHHHHHHHHhcCC---ceEEEEecCCccchHhh
Confidence                34456789999999999999998877643   99999999999998654

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.92  E-value=5.8e-24  Score=220.42  Aligned_cols=181  Identities=20%  Similarity=0.130  Sum_probs=151.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccc------------------------------------------
Q 025275           28 TGLTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMA------------------------------------------   64 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~------------------------------------------   64 (255)
                      +++++|||||++|||.++|++|+++ |++|++++|+..                                          
T Consensus      1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813      1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence            5899999999999999999999998 699999999820                                          


Q ss_pred             -----hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHH
Q 025275           65 -----AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATN  137 (255)
Q Consensus        65 -----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n  137 (255)
                           ......+.+.+.  +.++.++.||++|.++++++++++.+. +++|+||||||+..  .+.+.+.++|.+++++|
T Consensus      2076 ~~~~~ei~~~la~l~~~--G~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~n 2152 (2582)
T TIGR02813      2076 VLSSLEIAQALAAFKAA--GASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVLADKHIQDKTLEEFNAVYGTK 2152 (2582)
T ss_pred             cchhHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccCCCCCcccCCHHHHHHHHHHH
Confidence                 011122223222  567899999999999999999999877 67999999999874  35678999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHh
Q 025275          138 HLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLK  217 (255)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~  217 (255)
                      +.|.+++++++.+.+.         ++||++||..+..               +.+++..|+++|+++.++++.++.++.
T Consensus      2153 v~G~~~Ll~al~~~~~---------~~IV~~SSvag~~---------------G~~gqs~YaaAkaaL~~la~~la~~~~ 2208 (2582)
T TIGR02813      2153 VDGLLSLLAALNAENI---------KLLALFSSAAGFY---------------GNTGQSDYAMSNDILNKAALQLKALNP 2208 (2582)
T ss_pred             HHHHHHHHHHHHHhCC---------CeEEEEechhhcC---------------CCCCcHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999998876543         3899999999887               455788999999999999999988764


Q ss_pred             hCCCcEEEEEeeCCceecCccc
Q 025275          218 EDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       218 ~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                        +  ++|++|.||+++|+|..
T Consensus      2209 --~--irV~sI~wG~wdtgm~~ 2226 (2582)
T TIGR02813      2209 --S--AKVMSFNWGPWDGGMVN 2226 (2582)
T ss_pred             --C--cEEEEEECCeecCCccc
Confidence              2  89999999999998853

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.92  E-value=9e-25  Score=174.52  Aligned_cols=187  Identities=21%  Similarity=0.210  Sum_probs=154.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+|++|+||+|.|||.+++..+.+.+-+....++++....  .+.++-.++ +.......|++...-+.++++..+.++|
T Consensus         5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~--~~~L~v~~g-d~~v~~~g~~~e~~~l~al~e~~r~k~g   81 (253)
T KOG1204|consen    5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE--LEGLKVAYG-DDFVHVVGDITEEQLLGALREAPRKKGG   81 (253)
T ss_pred             cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc--ccceEEEec-CCcceechHHHHHHHHHHHHhhhhhcCC
Confidence            4688999999999999999999998877666665554433  333333333 3445556688877778888999999999


Q ss_pred             CeeEEEEccCCCCCC-----CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          108 PLNILINNAGIMASP-----FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       108 ~id~lv~~ag~~~~~-----~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ..|++|||||...+.     ...+.++|.+.++.|+.+.+.+.+.++|.++++    +..+.+||+||.+++.       
T Consensus        82 kr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~----p~~~~vVnvSS~aav~-------  150 (253)
T KOG1204|consen   82 KRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKS----PVNGNVVNVSSLAAVR-------  150 (253)
T ss_pred             ceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCC----CccCeEEEecchhhhc-------
Confidence            999999999988652     256789999999999999999999999999873    1368999999999887       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                              |+..+..|+++|+|.+++++.+|.|-. ++  |++.+++||.++|+|-.
T Consensus       151 --------p~~~wa~yc~~KaAr~m~f~~lA~EEp-~~--v~vl~~aPGvvDT~mq~  196 (253)
T KOG1204|consen  151 --------PFSSWAAYCSSKAARNMYFMVLASEEP-FD--VRVLNYAPGVVDTQMQV  196 (253)
T ss_pred             --------cccHHHHhhhhHHHHHHHHHHHhhcCc-cc--eeEEEccCCcccchhHH
Confidence                    788999999999999999999998876 66  99999999999999854

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.91  E-value=3.8e-23  Score=183.88  Aligned_cols=180  Identities=23%  Similarity=0.208  Sum_probs=134.9

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++++|+++||||+||||++++++|+++|++|++++|+.+++.+.   +...  ...+..+.+|++|++++.+.+   
T Consensus       172 ta~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~---~~~~--~~~v~~v~~Dvsd~~~v~~~l---  243 (406)
T PRK07424        172 TALSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLE---INGE--DLPVKTLHWQVGQEAALAELL---  243 (406)
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---Hhhc--CCCeEEEEeeCCCHHHHHHHh---
Confidence            34567899999999999999999999999999999999987654332   2221  234678899999998876654   


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                          +++|++|||||.... .+.+.+++.+++++|+.|+++++++++|.|+++.. ...++.+|++|+ ++.        
T Consensus       244 ----~~IDiLInnAGi~~~-~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~-~~~~~iiVn~Ss-a~~--------  308 (406)
T PRK07424        244 ----EKVDILIINHGINVH-GERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRD-KATKEVWVNTSE-AEV--------  308 (406)
T ss_pred             ----CCCCEEEECCCcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCeEEEEEcc-ccc--------
Confidence                479999999997543 35788899999999999999999999999986311 012345666654 322        


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                              ..+..+.|++||+|+.++++ +..+.  .+  +.+..+.||+++|++.
T Consensus       309 --------~~~~~~~Y~ASKaAl~~l~~-l~~~~--~~--~~I~~i~~gp~~t~~~  351 (406)
T PRK07424        309 --------NPAFSPLYELSKRALGDLVT-LRRLD--AP--CVVRKLILGPFKSNLN  351 (406)
T ss_pred             --------cCCCchHHHHHHHHHHHHHH-HHHhC--CC--CceEEEEeCCCcCCCC
Confidence                    11234679999999999975 33332  23  5666789999999874

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.91  E-value=5.9e-24  Score=177.94  Aligned_cols=164  Identities=27%  Similarity=0.287  Sum_probs=130.3

Q ss_pred             HHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeEEEEccCCCCCCCC
Q 025275           45 TARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM  124 (255)
Q Consensus        45 ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag~~~~~~~  124 (255)
                      +|++|+++|++|++++|+.++..             ...++++|++|.++++++++++.   +++|+||||||...    
T Consensus         1 ~a~~l~~~G~~Vv~~~r~~~~~~-------------~~~~~~~Dl~~~~~v~~~~~~~~---~~iD~li~nAG~~~----   60 (241)
T PRK12428          1 TARLLRFLGARVIGVDRREPGMT-------------LDGFIQADLGDPASIDAAVAALP---GRIDALFNIAGVPG----   60 (241)
T ss_pred             ChHHHHhCCCEEEEEeCCcchhh-------------hhHhhcccCCCHHHHHHHHHHhc---CCCeEEEECCCCCC----
Confidence            57899999999999999876531             12467899999999999999874   57999999999742    


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC-CC------C------cccC
Q 025275          125 LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD-KI------N------DESA  191 (255)
Q Consensus       125 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~-~~------~------~~~~  191 (255)
                        .+++.+.+++|+.+++++++.++|+|.+       .|+||++||.+++..+.. .+.. ++      .      ...+
T Consensus        61 --~~~~~~~~~vN~~~~~~l~~~~~~~~~~-------~g~Iv~isS~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  130 (241)
T PRK12428         61 --TAPVELVARVNFLGLRHLTEALLPRMAP-------GGAIVNVASLAGAEWPQR-LELHKALAATASFDEGAAWLAAHP  130 (241)
T ss_pred             --CCCHHHhhhhchHHHHHHHHHHHHhccC-------CcEEEEeCcHHhhccccc-hHHHHhhhccchHHHHHHhhhccC
Confidence              2357889999999999999999999854       479999999987642110 0000 00      0      0124


Q ss_pred             CCCccchHHhHHHHHHHHHHHH-HHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          192 YNSFGAYGQSKLANILHAKELA-KHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       192 ~~~~~~Y~~sKaa~~~l~~~la-~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      .++...|++||++++++++.++ .++.++|  |+||+|+||+++|++.++
T Consensus       131 ~~~~~~Y~~sK~a~~~~~~~la~~e~~~~g--irvn~v~PG~v~T~~~~~  178 (241)
T PRK12428        131 VALATGYQLSKEALILWTMRQAQPWFGARG--IRVNCVAPGPVFTPILGD  178 (241)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHhhhccC--eEEEEeecCCccCccccc
Confidence            5567899999999999999999 9998888  999999999999998764

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=99.91  E-value=2.1e-23  Score=168.94  Aligned_cols=200  Identities=28%  Similarity=0.349  Sum_probs=168.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-----eEEEEEeccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-----HVIMAVRNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-----~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      ..|+++|||+++|||.+|+.+|++...     ++++++|+.++.++++.++.+.+|  ..++.++++|+++-.|+.++.+
T Consensus         2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~   81 (341)
T KOG1478|consen    2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK   81 (341)
T ss_pred             CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence            358999999999999999999998753     588999999999999999999988  5678999999999999999999


Q ss_pred             HHhcCCCCeeEEEEccCCCCCC-C----------------------------CCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 025275          101 EYNSQGRPLNILINNAGIMASP-F----------------------------MLSKDNIELQFATNHLGHFLLTHLLLDT  151 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~~~-~----------------------------~~~~~~~~~~~~~n~~~~~~~~~~~~~~  151 (255)
                      ++.++|.++|+++.|||.+..+ .                            -.+.|+..+.++.||.|.|.+.+.+.|.
T Consensus        82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl  161 (341)
T KOG1478|consen   82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL  161 (341)
T ss_pred             HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence            9999999999999999976310 0                            1355788999999999999999999999


Q ss_pred             HHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCC
Q 025275          152 MKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPG  231 (255)
Q Consensus       152 ~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG  231 (255)
                      +-.     +....+|++||..+--.+-      .+.+.+...+..+|++||.++.-+.-.+-+.+.+.|  +..++++||
T Consensus       162 l~~-----~~~~~lvwtSS~~a~kk~l------sleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g--~~qyvv~pg  228 (341)
T KOG1478|consen  162 LCH-----SDNPQLVWTSSRMARKKNL------SLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLG--INQYVVQPG  228 (341)
T ss_pred             hhc-----CCCCeEEEEeecccccccC------CHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccc--hhhhcccCc
Confidence            986     4455999999987543222      123344566778999999998888777777888878  999999999


Q ss_pred             ceecCcccc
Q 025275          232 SIVTNLFRY  240 (255)
Q Consensus       232 ~v~t~~~~~  240 (255)
                      ..-|.++..
T Consensus       229 ~~tt~~~~~  237 (341)
T KOG1478|consen  229 IFTTNSFSE  237 (341)
T ss_pred             eeecchhhh
Confidence            999987653

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.90  E-value=1.8e-22  Score=159.43  Aligned_cols=173  Identities=23%  Similarity=0.233  Sum_probs=140.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHH---HHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDV---REAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++||||+++||++++++|+++|+ .|++++|+.+.....   .++++..  +.++.++++|++++++++.+++++...
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEAL--GAEVTVVACDVADRAALAAALAAIPAR   78 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5799999999999999999999997 688888876554332   2444433  557889999999999999999999888


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++++|++||++|...  +..+.+.+++.+++++|+.+++++++++.+         .+.+++|++||..+..        
T Consensus        79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~---------~~~~~ii~~ss~~~~~--------  141 (180)
T smart00822       79 LGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRD---------LPLDFFVLFSSVAGVL--------  141 (180)
T ss_pred             cCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhcc---------CCcceEEEEccHHHhc--------
Confidence            899999999999763  345678889999999999999999998832         2357999999988765        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCcee
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV  234 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~  234 (255)
                             +......|+++|+++..+++.+    ...+  +++..+.||+++
T Consensus       142 -------~~~~~~~y~~sk~~~~~~~~~~----~~~~--~~~~~~~~g~~~  179 (180)
T smart00822      142 -------GNPGQANYAAANAFLDALAAHR----RARG--LPATSINWGAWA  179 (180)
T ss_pred             -------CCCCchhhHHHHHHHHHHHHHH----HhcC--CceEEEeecccc
Confidence                   3346678999999988877665    4455  778889999875

It uses NADPH to reduce the keto group to a hydroxy group.

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.90  E-value=1.7e-22  Score=176.28  Aligned_cols=168  Identities=17%  Similarity=0.178  Sum_probs=132.7

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++|++|||||+|+||++++++|+++|  ++|++++|+........+.+    ...++.++.+|++|.+++.++++    
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~~~l~~~~~----   73 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF----PAPCLRFFIGDVRDKERLTRALR----   73 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh----CCCcEEEEEccCCCHHHHHHHHh----
Confidence            468999999999999999999999987  68999988765433322222    23468899999999999888776    


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                         .+|+|||+||.....  ....+..+.+++|+.|++++++++.+.         +.++||++||...           
T Consensus        74 ---~iD~Vih~Ag~~~~~--~~~~~~~~~~~~Nv~g~~~ll~aa~~~---------~~~~iV~~SS~~~-----------  128 (324)
T TIGR03589        74 ---GVDYVVHAAALKQVP--AAEYNPFECIRTNINGAQNVIDAAIDN---------GVKRVVALSTDKA-----------  128 (324)
T ss_pred             ---cCCEEEECcccCCCc--hhhcCHHHHHHHHHHHHHHHHHHHHHc---------CCCEEEEEeCCCC-----------
Confidence               489999999975322  122233568999999999999998752         2359999999652           


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                             ..+...|+++|++.+.+++.++.++...|  +++++++||.+.++
T Consensus       129 -------~~p~~~Y~~sK~~~E~l~~~~~~~~~~~g--i~~~~lR~g~v~G~  171 (324)
T TIGR03589       129 -------ANPINLYGATKLASDKLFVAANNISGSKG--TRFSVVRYGNVVGS  171 (324)
T ss_pred             -------CCCCCHHHHHHHHHHHHHHHHHhhccccC--cEEEEEeecceeCC
Confidence                   22456799999999999999988877777  99999999999975

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.89  E-value=7.9e-22  Score=173.71  Aligned_cols=188  Identities=19%  Similarity=0.134  Sum_probs=143.8

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++||++|||||+|+||.+++++|+++|++|++++|+........+.+..   ..++.++.+|++|.+++..++++.    
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~----   74 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNL---AKKIEDHFGDIRDAAKLRKAIAEF----   74 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhh---cCCceEEEccCCCHHHHHHHHhhc----
Confidence            4679999999999999999999999999999999987654433333321   336778999999999999998875    


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                       .+|+|||+|+...  ...+.+++.+.+++|+.+++++++++.+.        +..+++|++||...+.....   ..++
T Consensus        75 -~~d~vih~A~~~~--~~~~~~~~~~~~~~N~~g~~~ll~a~~~~--------~~~~~iv~~SS~~vyg~~~~---~~~~  140 (349)
T TIGR02622        75 -KPEIVFHLAAQPL--VRKSYADPLETFETNVMGTVNLLEAIRAI--------GSVKAVVNVTSDKCYRNDEW---VWGY  140 (349)
T ss_pred             -CCCEEEECCcccc--cccchhCHHHHHHHhHHHHHHHHHHHHhc--------CCCCEEEEEechhhhCCCCC---CCCC
Confidence             5899999999532  23455667788999999999999987421        11359999999765432111   1123


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhh----CCCcEEEEEeeCCceecCc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKE----DGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~----~~~~i~vn~v~PG~v~t~~  237 (255)
                      ++..+..+...|+.+|++++.+++.++.++.+    .+  ++++.+.|+.+.+|.
T Consensus       141 ~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~--i~~~~lR~~~vyGp~  193 (349)
T TIGR02622       141 RETDPLGGHDPYSSSKACAELVIASYRSSFFGVANFHG--IKIASARAGNVIGGG  193 (349)
T ss_pred             ccCCCCCCCCcchhHHHHHHHHHHHHHHHhhcccccCC--CcEEEEccCcccCCC
Confidence            34445556778999999999999999887754    25  999999999999874

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.88  E-value=3.3e-21  Score=167.98  Aligned_cols=190  Identities=19%  Similarity=0.128  Sum_probs=139.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+|++|||||+|+||++++++|+++|++|++++|+.+................++.++.+|++|.++++++++       
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~-------   76 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID-------   76 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc-------
Confidence            4789999999999999999999999999999999877654432222111112468899999999998888876       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC-ccCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG-IRFDKI  186 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~-~~~~~~  186 (255)
                      ++|+||||||....  ..+.+.+.+.+++|+.+++++++++.+.+.        .++||++||..++.+.... .+...+
T Consensus        77 ~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~--------~~~iv~~SS~~~~~~~~~~~~~~~~~  146 (325)
T PLN02989         77 GCETVFHTASPVAI--TVKTDPQVELINPAVNGTINVLRTCTKVSS--------VKRVILTSSMAAVLAPETKLGPNDVV  146 (325)
T ss_pred             CCCEEEEeCCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHcCC--------ceEEEEecchhheecCCccCCCCCcc
Confidence            48999999996432  234456788999999999999999876531        3599999998776542210 111223


Q ss_pred             CcccCCCC------ccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          187 NDESAYNS------FGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       187 ~~~~~~~~------~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      ++..+..+      ...|+.+|.+.+.+++.++.+.   +  +.+..++|+.+.+|...
T Consensus       147 ~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~ilR~~~vyGp~~~  200 (325)
T PLN02989        147 DETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDN---E--IDLIVLNPGLVTGPILQ  200 (325)
T ss_pred             CcCCCCchhHhcccccchHHHHHHHHHHHHHHHHHc---C--CeEEEEcCCceeCCCCC
Confidence            34333322      3579999999888877775544   4  88888999999998643

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.88  E-value=2.2e-21  Score=165.20  Aligned_cols=187  Identities=20%  Similarity=0.152  Sum_probs=145.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHH--HHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKD--VREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+++|+||||+|.||.+|+++|+++|+.|..+.|++++.+.  .+.++...  ..+...+.+|+.|+++++.+++     
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a--~~~l~l~~aDL~d~~sf~~ai~-----   77 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGA--KERLKLFKADLLDEGSFDKAID-----   77 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccC--cccceEEeccccccchHHHHHh-----
Confidence            67899999999999999999999999999999999987444  24444433  4469999999999999999999     


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTM-KKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                        ++|+|+|.|....... .+  .-.+.++.++.|+.+++++|.+.- .+         |||++||.+++..+.+.....
T Consensus        78 --gcdgVfH~Asp~~~~~-~~--~e~~li~pav~Gt~nVL~ac~~~~sVk---------rvV~TSS~aAv~~~~~~~~~~  143 (327)
T KOG1502|consen   78 --GCDGVFHTASPVDFDL-ED--PEKELIDPAVKGTKNVLEACKKTKSVK---------RVVYTSSTAAVRYNGPNIGEN  143 (327)
T ss_pred             --CCCEEEEeCccCCCCC-CC--cHHhhhhHHHHHHHHHHHHHhccCCcc---------eEEEeccHHHhccCCcCCCCC
Confidence              6899999998644321 11  234789999999999999998776 33         999999999887552222222


Q ss_pred             CCCcccCCCC-------ccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          185 KINDESAYNS-------FGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       185 ~~~~~~~~~~-------~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      ..-+++.+..       ...|..||    .+++..|+++++++ ++.+..|.|+.|-.|.+..
T Consensus       144 ~vvdE~~wsd~~~~~~~~~~Y~~sK----~lAEkaAw~fa~e~-~~~lv~inP~lV~GP~l~~  201 (327)
T KOG1502|consen  144 SVVDEESWSDLDFCRCKKLWYALSK----TLAEKAAWEFAKEN-GLDLVTINPGLVFGPGLQP  201 (327)
T ss_pred             cccccccCCcHHHHHhhHHHHHHHH----HHHHHHHHHHHHhC-CccEEEecCCceECCCccc
Confidence            2222223311       13699999    78899999998876 5888889999999997765

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.87  E-value=7.1e-21  Score=152.60  Aligned_cols=169  Identities=22%  Similarity=0.264  Sum_probs=128.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc---chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV-HVIMAVRNM---AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++|||||.||||..+++.|+++|. +|++++|+.   ....+.++++.+.  +.++.+++||++|++++.++++++.+.+
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~--g~~v~~~~~Dv~d~~~v~~~~~~~~~~~   79 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESA--GARVEYVQCDVTDPEAVAAALAQLRQRF   79 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHT--T-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhC--CCceeeeccCccCHHHHHHHHHHHHhcc
Confidence            689999999999999999999986 799999992   2455677777776  7799999999999999999999999999


Q ss_pred             CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          107 RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       107 g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      ++++.|||+||...  +..+.+.+++...+...+.|.+++.+++.+.         ....+|.+||+++..         
T Consensus        80 ~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~---------~l~~~i~~SSis~~~---------  141 (181)
T PF08659_consen   80 GPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENR---------PLDFFILFSSISSLL---------  141 (181)
T ss_dssp             S-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTT---------TTSEEEEEEEHHHHT---------
T ss_pred             CCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcC---------CCCeEEEECChhHhc---------
Confidence            99999999999874  4567889999999999999999999888652         234999999999887         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCC
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPG  231 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG  231 (255)
                            +.+++..|+++.+.++.+++..    ...|  ..+.+|.-|
T Consensus       142 ------G~~gq~~YaaAN~~lda~a~~~----~~~g--~~~~sI~wg  176 (181)
T PF08659_consen  142 ------GGPGQSAYAAANAFLDALARQR----RSRG--LPAVSINWG  176 (181)
T ss_dssp             ------T-TTBHHHHHHHHHHHHHHHHH----HHTT--SEEEEEEE-
T ss_pred             ------cCcchHhHHHHHHHHHHHHHHH----HhCC--CCEEEEEcc
Confidence                  5558899999997777666544    4445  445555444

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=99.86  E-value=3.3e-20  Score=161.59  Aligned_cols=186  Identities=15%  Similarity=0.068  Sum_probs=136.9

Q ss_pred             CCCcEEEEecCCCchHHH--HHHHHHHcCCeEEEEEeccchHH------------HHHHHHHhhCCCCceEEEEeCCCCH
Q 025275           27 GTGLTAIVTGASSGIGTE--TARVLALRGVHVIMAVRNMAAGK------------DVREAIVKEIPSAKVDAMELDVSSL   92 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~--ia~~L~~~G~~Vi~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~Dl~~~   92 (255)
                      ..+|++||||+++|+|.+  ||+.| +.|++|+++++..+...            ...+.+.+.  +..+..+.||++++
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~--G~~a~~i~~DVss~  115 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAA--GLYAKSINGDAFSD  115 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhc--CCceEEEEcCCCCH
Confidence            457999999999999999  89999 99999888886432221            223333332  45678899999999


Q ss_pred             HHHHHHHHHHhcCCCCeeEEEEccCCCCCCC------------------------------------CCChHHHHHHHHH
Q 025275           93 ASVRKFASEYNSQGRPLNILINNAGIMASPF------------------------------------MLSKDNIELQFAT  136 (255)
Q Consensus        93 ~si~~~~~~~~~~~g~id~lv~~ag~~~~~~------------------------------------~~~~~~~~~~~~~  136 (255)
                      ++++++++++.+.+|++|+||||+|......                                    ..+.+++..  .+
T Consensus       116 E~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~--Tv  193 (398)
T PRK13656        116 EIKQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIAD--TV  193 (398)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHH--HH
Confidence            9999999999999999999999999763211                                    011222322  33


Q ss_pred             HHHHH---HHH--HHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCc--cchHHhHHHHHHHH
Q 025275          137 NHLGH---FLL--THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF--GAYGQSKLANILHA  209 (255)
Q Consensus       137 n~~~~---~~~--~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~sKaa~~~l~  209 (255)
                      +++|.   ...  .+...+.|.       .++++|.+|...+..               .++.+  ..-+.+|++++.-+
T Consensus       194 ~vMggedw~~Wi~al~~a~lla-------~g~~~va~TY~G~~~---------------t~p~Y~~g~mG~AKa~LE~~~  251 (398)
T PRK13656        194 KVMGGEDWELWIDALDEAGVLA-------EGAKTVAYSYIGPEL---------------THPIYWDGTIGKAKKDLDRTA  251 (398)
T ss_pred             HhhccchHHHHHHHHHhccccc-------CCcEEEEEecCCcce---------------eecccCCchHHHHHHHHHHHH
Confidence            45554   222  333444443       478999999977554               22233  46799999999999


Q ss_pred             HHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          210 KELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       210 ~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      |.|+.+|++.|  ||+|++..|.+.|......
T Consensus       252 r~La~~L~~~g--iran~i~~g~~~T~Ass~I  281 (398)
T PRK13656        252 LALNEKLAAKG--GDAYVSVLKAVVTQASSAI  281 (398)
T ss_pred             HHHHHHhhhcC--CEEEEEecCcccchhhhcC
Confidence            99999999988  9999999999999765543

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.86  E-value=3e-20  Score=169.60  Aligned_cols=175  Identities=15%  Similarity=0.174  Sum_probs=134.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhC-------CCCceEEEEeCCCCHHHHHHHH
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-------PSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      ..||++|||||+|+||++++++|+++|++|++++|+.++++.+.+++.+..       ...++.++.+|++|.+++...+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            468999999999999999999999999999999999888777666554311       1235889999999998876644


Q ss_pred             HHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          100 SEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                             +++|+||||+|....    ...++...+++|+.|+.++++++.+.         +.++||++||..+...   
T Consensus       158 -------ggiDiVVn~AG~~~~----~v~d~~~~~~VN~~Gt~nLl~Aa~~a---------gVgRIV~VSSiga~~~---  214 (576)
T PLN03209        158 -------GNASVVICCIGASEK----EVFDVTGPYRIDYLATKNLVDAATVA---------KVNHFILVTSLGTNKV---  214 (576)
T ss_pred             -------cCCCEEEEccccccc----cccchhhHHHHHHHHHHHHHHHHHHh---------CCCEEEEEccchhccc---
Confidence                   468999999986432    12246677899999999999888643         2469999999875310   


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                 +... ..|. +|+++..+.+.+..++...|  |+++.|+||++.|++.+
T Consensus       215 -----------g~p~-~~~~-sk~~~~~~KraaE~~L~~sG--IrvTIVRPG~L~tp~d~  259 (576)
T PLN03209        215 -----------GFPA-AILN-LFWGVLCWKRKAEEALIASG--LPYTIVRPGGMERPTDA  259 (576)
T ss_pred             -----------Cccc-cchh-hHHHHHHHHHHHHHHHHHcC--CCEEEEECCeecCCccc
Confidence                       1111 1243 77888888888888888888  99999999999988644

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.86  E-value=5.7e-20  Score=160.02  Aligned_cols=190  Identities=22%  Similarity=0.202  Sum_probs=133.0

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      -+||+++||||+|+||.+++++|+++|++|+++.|+.+..+...+.........++.++.+|++|++++..+++      
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------   76 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIE------   76 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHh------
Confidence            56899999999999999999999999999999999876544332222111112468899999999998888887      


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc-ccccCccCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF-AYSEGIRFDK  185 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~-~~~~~~~~~~  185 (255)
                       .+|++||+|+.....  . .+...+.+++|+.++.++++++....        ..++||++||..++. +.+...+-..
T Consensus        77 -~~d~vih~A~~~~~~--~-~~~~~~~~~~nv~gt~~ll~~~~~~~--------~v~rvV~~SS~~~~~~~~~~~~~~~~  144 (322)
T PLN02986         77 -GCDAVFHTASPVFFT--V-KDPQTELIDPALKGTINVLNTCKETP--------SVKRVILTSSTAAVLFRQPPIEANDV  144 (322)
T ss_pred             -CCCEEEEeCCCcCCC--C-CCchhhhhHHHHHHHHHHHHHHHhcC--------CccEEEEecchhheecCCccCCCCCC
Confidence             489999999864321  1 12335678999999999998875421        124999999987642 2111111111


Q ss_pred             CCcccCC------CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          186 INDESAY------NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       186 ~~~~~~~------~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      ++++...      .+...|+.+|.+.+.+++.+..+.   +  +.++.++|+.+.+|...
T Consensus       145 ~~E~~~~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~---~--~~~~~lrp~~v~Gp~~~  199 (322)
T PLN02986        145 VDETFFSDPSLCRETKNWYPLSKILAENAAWEFAKDN---G--IDMVVLNPGFICGPLLQ  199 (322)
T ss_pred             cCcccCCChHHhhccccchHHHHHHHHHHHHHHHHHh---C--CeEEEEcccceeCCCCC
Confidence            2222211      124679999998777776665443   4  88899999999998643

>PLN02214 cinnamoyl-CoA reductase

Probab=99.85  E-value=6.5e-20  Score=161.16  Aligned_cols=182  Identities=19%  Similarity=0.155  Sum_probs=133.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH-HHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV-REAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++|+++||||+|+||++++++|+++|++|++++|+.+..... .+.+..  ...++.++.+|++|.+++..+++     
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~-----   80 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG--GKERLILCKADLQDYEALKAAID-----   80 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC--CCCcEEEEecCcCChHHHHHHHh-----
Confidence            5678999999999999999999999999999999986643221 222221  12368889999999998888876     


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                        ++|+|||+|+...       +++.+.+++|+.++.++++++.+..         ..+||++||..++++.+...+...
T Consensus        81 --~~d~Vih~A~~~~-------~~~~~~~~~nv~gt~~ll~aa~~~~---------v~r~V~~SS~~avyg~~~~~~~~~  142 (342)
T PLN02214         81 --GCDGVFHTASPVT-------DDPEQMVEPAVNGAKFVINAAAEAK---------VKRVVITSSIGAVYMDPNRDPEAV  142 (342)
T ss_pred             --cCCEEEEecCCCC-------CCHHHHHHHHHHHHHHHHHHHHhcC---------CCEEEEeccceeeeccCCCCCCcc
Confidence              4899999998531       2456789999999999999986432         249999999876654322211112


Q ss_pred             CCccc------CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          186 INDES------AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       186 ~~~~~------~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      ++++.      +..+...|+.+|.+.+.+++.++.++   +  +.+..++|+.+..|..
T Consensus       143 ~~E~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~---g--~~~v~lRp~~vyGp~~  196 (342)
T PLN02214        143 VDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEK---G--VDLVVLNPVLVLGPPL  196 (342)
T ss_pred             cCcccCCChhhccccccHHHHHHHHHHHHHHHHHHHc---C--CcEEEEeCCceECCCC
Confidence            33331      22245689999999888877765554   4  7888899999999853

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.85  E-value=4.9e-20  Score=161.68  Aligned_cols=192  Identities=15%  Similarity=0.101  Sum_probs=136.4

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHH-HHHHHHHhh--CCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGK-DVREAIVKE--IPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~-~~~~~~~~~--~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ++++|++|||||+|+||++++++|+++|++|++++|..+... ...+.+...  ..+.++.++.+|++|.+++..+++++
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   82 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI   82 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence            567899999999999999999999999999999998754321 112222110  11346889999999999999999875


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                           .+|+|||+|+.....  ...+.....+++|+.|+.++++++.+...+.    ++.-++|++||...+ +....  
T Consensus        83 -----~~d~Vih~A~~~~~~--~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~----~~~~~~v~~Ss~~vy-g~~~~--  148 (340)
T PLN02653         83 -----KPDEVYNLAAQSHVA--VSFEMPDYTADVVATGALRLLEAVRLHGQET----GRQIKYYQAGSSEMY-GSTPP--  148 (340)
T ss_pred             -----CCCEEEECCcccchh--hhhhChhHHHHHHHHHHHHHHHHHHHhcccc----ccceeEEEeccHHHh-CCCCC--
Confidence                 589999999975432  2234456778999999999999998876531    111278888886533 22211  


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCC-CcEEEEEeeCCce
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDG-VNITANSLHPGSI  233 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~-~~i~vn~v~PG~v  233 (255)
                        +++++.+..+...|+.||.+.+.+++.++.++.-.- ..+.+|...|+..
T Consensus       149 --~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~  198 (340)
T PLN02653        149 --PQSETTPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRG  198 (340)
T ss_pred             --CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCC
Confidence              345555666778999999999999999887764210 0144555566543

>PLN02583 cinnamoyl-CoA reductase

Probab=99.85  E-value=1.2e-19  Score=156.46  Aligned_cols=188  Identities=15%  Similarity=0.038  Sum_probs=129.8

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch--HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA--GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      +=.+|++|||||+|+||++++++|+++|++|+++.|+.+.  ..+....+...  +.++.++.+|++|.+++..++.   
T Consensus         3 ~~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~---   77 (297)
T PLN02583          3 DESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALK---   77 (297)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHc---
Confidence            3457899999999999999999999999999999986432  22222222211  3468899999999998877665   


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc-Ccc
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE-GIR  182 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~-~~~  182 (255)
                          .+|.++|.++....   .. ..+.+++++|+.|++++++++.+.+.        .++||++||..+....+. ..+
T Consensus        78 ----~~d~v~~~~~~~~~---~~-~~~~~~~~~nv~gt~~ll~aa~~~~~--------v~riV~~SS~~a~~~~~~~~~~  141 (297)
T PLN02583         78 ----GCSGLFCCFDPPSD---YP-SYDEKMVDVEVRAAHNVLEACAQTDT--------IEKVVFTSSLTAVIWRDDNIST  141 (297)
T ss_pred             ----CCCEEEEeCccCCc---cc-ccHHHHHHHHHHHHHHHHHHHHhcCC--------ccEEEEecchHheecccccCCC
Confidence                47888887753221   11 24578899999999999999986541        259999999877542111 011


Q ss_pred             CCCCCcccCCCC------ccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          183 FDKINDESAYNS------FGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       183 ~~~~~~~~~~~~------~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      ...+++..+...      ...|+.||...+.+++.++..   .+  +++++|+|+.|.+|...
T Consensus       142 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~---~g--i~~v~lrp~~v~Gp~~~  199 (297)
T PLN02583        142 QKDVDERSWSDQNFCRKFKLWHALAKTLSEKTAWALAMD---RG--VNMVSINAGLLMGPSLT  199 (297)
T ss_pred             CCCCCcccCCCHHHHhhcccHHHHHHHHHHHHHHHHHHH---hC--CcEEEEcCCcccCCCCC
Confidence            112333322111      126999997766666555433   35  99999999999998643

>PLN02650 dihydroflavonol-4-reductase

Probab=99.84  E-value=1.8e-19  Score=158.86  Aligned_cols=186  Identities=21%  Similarity=0.082  Sum_probs=132.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ..|++|||||+|+||.+++++|+++|++|++++|+.+......+.........++.++..|++|.+++..+++       
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~-------   76 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR-------   76 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh-------
Confidence            4578999999999999999999999999999999876554443322111012358899999999998888776       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      .+|+|||+|+.... .  ..+.+.+.+++|+.+++++++++.+...        ..+||++||...+.......+.  ++
T Consensus        77 ~~d~ViH~A~~~~~-~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~--------~~r~v~~SS~~~~~~~~~~~~~--~~  143 (351)
T PLN02650         77 GCTGVFHVATPMDF-E--SKDPENEVIKPTVNGMLSIMKACAKAKT--------VRRIVFTSSAGTVNVEEHQKPV--YD  143 (351)
T ss_pred             CCCEEEEeCCCCCC-C--CCCchhhhhhHHHHHHHHHHHHHHhcCC--------ceEEEEecchhhcccCCCCCCc--cC
Confidence            47999999986431 1  1223357799999999999999876431        2389999998655432111110  11


Q ss_pred             ccc---------CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          188 DES---------AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       188 ~~~---------~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      +..         +..+...|+.||.+.+.+++.++.++   |  ++++.++|+.+.+|..
T Consensus       144 E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---g--i~~~ilRp~~v~Gp~~  198 (351)
T PLN02650        144 EDCWSDLDFCRRKKMTGWMYFVSKTLAEKAAWKYAAEN---G--LDFISIIPTLVVGPFI  198 (351)
T ss_pred             cccCCchhhhhccccccchHHHHHHHHHHHHHHHHHHc---C--CeEEEECCCceECCCC
Confidence            110         11123479999999888888776653   4  8999999999999854

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.84  E-value=3.6e-19  Score=161.29  Aligned_cols=194  Identities=13%  Similarity=0.137  Sum_probs=135.7

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc---h----H---------HHHHHHHHhhCCCCceEEEE
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA---A----G---------KDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~---~----~---------~~~~~~~~~~~~~~~~~~~~   86 (255)
                      ....+++|++|||||+|+||++++++|+++|++|+++++...   .    .         .+..+.+... .+.++.++.
T Consensus        41 ~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~v~  119 (442)
T PLN02572         41 SSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEV-SGKEIELYV  119 (442)
T ss_pred             CCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHh-hCCcceEEE
Confidence            344578899999999999999999999999999999875321   0    0         0111222111 134688999


Q ss_pred             eCCCCHHHHHHHHHHHhcCCCCeeEEEEccCCCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeE
Q 025275           87 LDVSSLASVRKFASEYNSQGRPLNILINNAGIMASP-FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRI  165 (255)
Q Consensus        87 ~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~i  165 (255)
                      +|++|.+++..+++++     ++|+|||+|+..... ...+++++...+++|+.|++++++++.....        ..++
T Consensus       120 ~Dl~d~~~v~~~l~~~-----~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv--------~~~~  186 (442)
T PLN02572        120 GDICDFEFLSEAFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAP--------DCHL  186 (442)
T ss_pred             CCCCCHHHHHHHHHhC-----CCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCC--------CccE
Confidence            9999999999999875     699999999764322 2234455677789999999999998865422        2389


Q ss_pred             EEecCCccccccccCccCC--CCC------cc---cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCcee
Q 025275          166 VNVSSEAHRFAYSEGIRFD--KIN------DE---SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV  234 (255)
Q Consensus       166 i~vsS~~~~~~~~~~~~~~--~~~------~~---~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~  234 (255)
                      |++||...+....  .+.+  .+.      ++   .+..+...|+.+|.+.+.+++.++..+   |  +.+..+.|+.+.
T Consensus       187 V~~SS~~vYG~~~--~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~---g--l~~v~lR~~~vy  259 (442)
T PLN02572        187 VKLGTMGEYGTPN--IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---G--IRATDLNQGVVY  259 (442)
T ss_pred             EEEecceecCCCC--CCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhc---C--CCEEEEeccccc
Confidence            9999986543211  1111  110      11   134456789999999888777765543   4  888889999998


Q ss_pred             cCc
Q 025275          235 TNL  237 (255)
Q Consensus       235 t~~  237 (255)
                      .|.
T Consensus       260 Gp~  262 (442)
T PLN02572        260 GVR  262 (442)
T ss_pred             CCC
Confidence            875

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.84  E-value=4.5e-19  Score=155.47  Aligned_cols=187  Identities=16%  Similarity=0.076  Sum_probs=130.9

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++++++|||||+|+||++++++|+++|++|++++|+.+....... +.......++.++.+|++|.+++..+++      
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   79 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDEESFEAPIA------   79 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCChHHHHHHHh------
Confidence            457899999999999999999999999999989888654432221 1111101258899999999998888776      


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc---cCccC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS---EGIRF  183 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~---~~~~~  183 (255)
                       ++|+|||+|+....   ...+...+.+++|+.++.++++++.+..        ..+++|++||.+.+...+   ...+.
T Consensus        80 -~~d~vih~A~~~~~---~~~~~~~~~~~~nv~g~~~ll~a~~~~~--------~~~~~v~~SS~~~~g~~~~~~~~~~~  147 (338)
T PLN00198         80 -GCDLVFHVATPVNF---ASEDPENDMIKPAIQGVHNVLKACAKAK--------SVKRVILTSSAAAVSINKLSGTGLVM  147 (338)
T ss_pred             -cCCEEEEeCCCCcc---CCCChHHHHHHHHHHHHHHHHHHHHhcC--------CccEEEEeecceeeeccCCCCCCcee
Confidence             47999999985321   1123345678999999999999986532        134999999987654221   01111


Q ss_pred             CCC-----Cc-ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          184 DKI-----ND-ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       184 ~~~-----~~-~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      ++-     +. ....++...|+.||.+.+.+++.++..+   +  +.+..++|+.+.+|.
T Consensus       148 ~E~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~~~R~~~vyGp~  202 (338)
T PLN00198        148 NEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEEN---N--IDLITVIPTLMAGPS  202 (338)
T ss_pred             ccccCCchhhhhhcCCccchhHHHHHHHHHHHHHHHHhc---C--ceEEEEeCCceECCC
Confidence            100     00 0122355679999999888877776543   4  888889999999985

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.84  E-value=2.9e-19  Score=157.56  Aligned_cols=192  Identities=12%  Similarity=0.097  Sum_probs=133.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEE-EEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVI-MAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      |++|||||+|+||++++++|+++|++++ +.++... .... ..+.......++.++.+|++|.+++++++++.     +
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~   74 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTY-AGNL-MSLAPVAQSERFAFEKVDICDRAELARVFTEH-----Q   74 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCcc-ccch-hhhhhcccCCceEEEECCCcChHHHHHHHhhc-----C
Confidence            5799999999999999999999998755 4454322 1111 11111112346788999999999999988863     5


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      +|+|||+||....  ..+.+.+.+.+++|+.+++++++++.+.+........+..++|++||...+ +.... ...++++
T Consensus        75 ~D~Vih~A~~~~~--~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vy-g~~~~-~~~~~~E  150 (355)
T PRK10217         75 PDCVMHLAAESHV--DRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVY-GDLHS-TDDFFTE  150 (355)
T ss_pred             CCEEEECCcccCc--chhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhc-CCCCC-CCCCcCC
Confidence            9999999986432  234456788999999999999999987643210000123489999987643 21111 1113455


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      ..+..+...|+.||.+.+.+++.++.++.     +.+..+.|+.+..|-
T Consensus       151 ~~~~~p~s~Y~~sK~~~e~~~~~~~~~~~-----~~~~i~r~~~v~Gp~  194 (355)
T PRK10217        151 TTPYAPSSPYSASKASSDHLVRAWLRTYG-----LPTLITNCSNNYGPY  194 (355)
T ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHhC-----CCeEEEeeeeeeCCC
Confidence            55666678899999999999998877653     555567787776654

>PRK06720 hypothetical protein; Provisional

Probab=99.84  E-value=1.7e-19  Score=142.70  Aligned_cols=146  Identities=19%  Similarity=0.197  Sum_probs=118.3

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+.+++|+++||||++|||.+++++|++.|++|++++|+.+.+++..+++...  +.++.++++|+++.+++.++++++.
T Consensus        11 ~~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~v~~~~   88 (169)
T PRK06720         11 KMKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNL--GGEALFVSYDMEKQGDWQRVISITL   88 (169)
T ss_pred             ccccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999988777777777643  4467789999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCeEEEecCCccc
Q 025275          104 SQGRPLNILINNAGIMAS---PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQK--SSREGRIVNVSSEAHR  174 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~---~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~--~~~~g~ii~vsS~~~~  174 (255)
                      +.+|++|++|||||....   +.+.+.+. ++  .+|+.+++..++.+.+.+.++...  ....||+..+|+-+..
T Consensus        89 ~~~G~iDilVnnAG~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (169)
T PRK06720         89 NAFSRIDMLFQNAGLYKIDSIFSRQQEND-SN--VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQS  161 (169)
T ss_pred             HHcCCCCEEEECCCcCCCCCcccccchhH-hh--ceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEecccccc
Confidence            999999999999997642   22333333 33  778888999999999998874432  3567888888886643

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.84  E-value=3.2e-19  Score=157.32  Aligned_cols=189  Identities=19%  Similarity=0.128  Sum_probs=134.4

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +..++++|||||+|+||++++++|+++|++|++++|+.+..+...+.+..   +.++.++.+|++|.+++.++++     
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~-----   78 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVK-----   78 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHc-----
Confidence            45678999999999999999999999999999999886655444433321   3468899999999998888775     


Q ss_pred             CCCeeEEEEccCCCCCCC---CCChHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          106 GRPLNILINNAGIMASPF---MLSKDNI--ELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~---~~~~~~~--~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                        .+|+|||+|+......   ..+++.+  ...++.|+.+++++++++.+..        ..++||++||.+.+...+..
T Consensus        79 --~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~--------~~~~~v~~SS~~vyg~~~~~  148 (353)
T PLN02896         79 --GCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK--------TVKRVVFTSSISTLTAKDSN  148 (353)
T ss_pred             --CCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC--------CccEEEEEechhhccccccC
Confidence              4899999999754322   1233332  3456778899999999887542        13499999998765432211


Q ss_pred             ccC-CCCCcc--cC-------CCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          181 IRF-DKINDE--SA-------YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       181 ~~~-~~~~~~--~~-------~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .++ .++++.  .+       .++...|+.||.+.+.+++.++.++   +  +++..++|+.+..|.
T Consensus       149 ~~~~~~~~E~~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~~lR~~~vyGp~  210 (353)
T PLN02896        149 GRWRAVVDETCQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKEN---G--IDLVSVITTTVAGPF  210 (353)
T ss_pred             CCCCCccCcccCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHc---C--CeEEEEcCCcccCCC
Confidence            111 112222  11       1233579999999888887776544   4  888999999998885

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.83  E-value=3.8e-19  Score=154.61  Aligned_cols=187  Identities=18%  Similarity=0.113  Sum_probs=130.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhC-CCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-PSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++|++|||||+|+||++++++|+++|++|++++|+....... ..+.... ...++.++.+|++|++++..+++      
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------   75 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKT-EHLLALDGAKERLHLFKANLLEEGSFDSVVD------   75 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhH-HHHHhccCCCCceEEEeccccCcchHHHHHc------
Confidence            578999999999999999999999999999999987653322 2222111 12368899999999988888776      


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc-cccccCccCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR-FAYSEGIRFDK  185 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~-~~~~~~~~~~~  185 (255)
                       .+|+|||+|+......   .+...+.+++|+.++.++++++....        +..+||++||..++ ++.....+...
T Consensus        76 -~~d~Vih~A~~~~~~~---~~~~~~~~~~nv~gt~~ll~a~~~~~--------~~~~~v~~SS~~~~~y~~~~~~~~~~  143 (322)
T PLN02662         76 -GCEGVFHTASPFYHDV---TDPQAELIDPAVKGTLNVLRSCAKVP--------SVKRVVVTSSMAAVAYNGKPLTPDVV  143 (322)
T ss_pred             -CCCEEEEeCCcccCCC---CChHHHHHHHHHHHHHHHHHHHHhCC--------CCCEEEEccCHHHhcCCCcCCCCCCc
Confidence             4799999998643211   11224688999999999999987432        12499999997643 22111001112


Q ss_pred             CCcccCCCC------ccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          186 INDESAYNS------FGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       186 ~~~~~~~~~------~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      ++++.+..+      ...|+.+|.+.+.+++.+..+.   +  +++..++|+.+.+|..
T Consensus       144 ~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~~lRp~~v~Gp~~  197 (322)
T PLN02662        144 VDETWFSDPAFCEESKLWYVLSKTLAEEAAWKFAKEN---G--IDMVTINPAMVIGPLL  197 (322)
T ss_pred             CCcccCCChhHhhcccchHHHHHHHHHHHHHHHHHHc---C--CcEEEEeCCcccCCCC
Confidence            333333222      2479999988777776654433   4  8888899999999864

>PLN02240 UDP-glucose 4-epimerase

Probab=99.82  E-value=9.9e-19  Score=153.90  Aligned_cols=185  Identities=18%  Similarity=0.163  Sum_probs=132.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhC--CCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI--PSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      |++++|+++||||+|+||.+++++|+++|++|++++|.........+.+....  .+.++.++.+|++|++++..++++.
T Consensus         1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~   80 (352)
T PLN02240          1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST   80 (352)
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC
Confidence            46778999999999999999999999999999999876443322222222211  1346789999999999999988763


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                           .+|+|||+|+.....  .+.+.+.+.+++|+.++.++++++...         +..++|++||.. .++....  
T Consensus        81 -----~~d~vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~v~~Ss~~-vyg~~~~--  141 (352)
T PLN02240         81 -----RFDAVIHFAGLKAVG--ESVAKPLLYYDNNLVGTINLLEVMAKH---------GCKKLVFSSSAT-VYGQPEE--  141 (352)
T ss_pred             -----CCCEEEEccccCCcc--ccccCHHHHHHHHHHHHHHHHHHHHHc---------CCCEEEEEccHH-HhCCCCC--
Confidence                 699999999865321  233466788999999999999866421         234899999964 3332221  


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCce
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSI  233 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v  233 (255)
                       .+++++.+..+...|+.+|.+.+.+++.++...  .+  +++..+.++.+
T Consensus       142 -~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~--~~~~~~R~~~v  187 (352)
T PLN02240        142 -VPCTEEFPLSATNPYGRTKLFIEEICRDIHASD--PE--WKIILLRYFNP  187 (352)
T ss_pred             -CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CC--CCEEEEeecCc
Confidence             235566667677899999999999888776542  12  55555665433

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.82  E-value=1e-18  Score=153.49  Aligned_cols=171  Identities=15%  Similarity=0.113  Sum_probs=125.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchH-HHHHHHHHhh---CCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAG-KDVREAIVKE---IPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~-~~~~~~~~~~---~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      |++|||||+|+||++++++|++.|++|++++|+.+.. ....+.+...   ..+..+.++.+|++|.+++.++++++   
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~---   77 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI---   77 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC---
Confidence            6899999999999999999999999999999886421 1112222111   01235889999999999999999875   


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                        ++|+|||+|+.....  .+.+.....+++|+.|+.++++++.+.-.+      +..++|++||...+. ....   .+
T Consensus        78 --~~d~ViH~Aa~~~~~--~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~------~~~~~v~~SS~~vyg-~~~~---~~  143 (343)
T TIGR01472        78 --KPTEIYNLAAQSHVK--VSFEIPEYTADVDGIGTLRLLEAVRTLGLI------KSVKFYQASTSELYG-KVQE---IP  143 (343)
T ss_pred             --CCCEEEECCcccccc--hhhhChHHHHHHHHHHHHHHHHHHHHhCCC------cCeeEEEeccHHhhC-CCCC---CC
Confidence              589999999975432  222334567889999999999999764321      123899999976443 2211   23


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHh
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLK  217 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~  217 (255)
                      ++++.+..+...|+.||.+.+.+++.++.++.
T Consensus       144 ~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~  175 (343)
T TIGR01472       144 QNETTPFYPRSPYAAAKLYAHWITVNYREAYG  175 (343)
T ss_pred             CCCCCCCCCCChhHHHHHHHHHHHHHHHHHhC
Confidence            55566666778999999999999999887763

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.82  E-value=8.7e-19  Score=157.17  Aligned_cols=174  Identities=20%  Similarity=0.212  Sum_probs=151.4

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++||++|||||+|.||+++++++++.+. ++++.+|++-++....+++....+..++.++-+|+.|.+.+..++++.   
T Consensus       248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~---  324 (588)
T COG1086         248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH---  324 (588)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC---
Confidence            7899999999999999999999999997 599999999999999999998877789999999999999999999976   


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                        ++|+|+|.|+.-+.+  ..+..+.+.+++|+.|+.++++++...-.+         ++|.+|+--++           
T Consensus       325 --kvd~VfHAAA~KHVP--l~E~nP~Eai~tNV~GT~nv~~aa~~~~V~---------~~V~iSTDKAV-----------  380 (588)
T COG1086         325 --KVDIVFHAAALKHVP--LVEYNPEEAIKTNVLGTENVAEAAIKNGVK---------KFVLISTDKAV-----------  380 (588)
T ss_pred             --CCceEEEhhhhccCc--chhcCHHHHHHHhhHhHHHHHHHHHHhCCC---------EEEEEecCccc-----------
Confidence              699999999986543  445566788999999999999999988776         99999996644           


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                             .+...||++|...+.++++++......+  -++.+|.=|.|-.+
T Consensus       381 -------~PtNvmGaTKr~aE~~~~a~~~~~~~~~--T~f~~VRFGNVlGS  422 (588)
T COG1086         381 -------NPTNVMGATKRLAEKLFQAANRNVSGTG--TRFCVVRFGNVLGS  422 (588)
T ss_pred             -------CCchHhhHHHHHHHHHHHHHhhccCCCC--cEEEEEEecceecC
Confidence                   3678999999999999999988766544  67778888887764

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.81  E-value=2.2e-18  Score=151.78  Aligned_cols=189  Identities=13%  Similarity=0.074  Sum_probs=135.0

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhC---CCCceEEEEeCCCCHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI---PSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      ..+.+++|++|||||+|.||.+++++|+++|++|++++|................   ...++.++.+|++|.+++..++
T Consensus         9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~   88 (348)
T PRK15181          9 TKLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC   88 (348)
T ss_pred             hcccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh
Confidence            4466788999999999999999999999999999999986543332222222111   1235789999999998888777


Q ss_pred             HHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          100 SEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +       .+|+|||+|+......  +.++..+.+++|+.|+.++++++...-         -.++|++||...+.. ..
T Consensus        89 ~-------~~d~ViHlAa~~~~~~--~~~~~~~~~~~Nv~gt~nll~~~~~~~---------~~~~v~~SS~~vyg~-~~  149 (348)
T PRK15181         89 K-------NVDYVLHQAALGSVPR--SLKDPIATNSANIDGFLNMLTAARDAH---------VSSFTYAASSSTYGD-HP  149 (348)
T ss_pred             h-------CCCEEEECccccCchh--hhhCHHHHHHHHHHHHHHHHHHHHHcC---------CCeEEEeechHhhCC-CC
Confidence            6       4899999998654321  223445679999999999998885421         238999999754431 11


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      ..   ++.++.+..+...|+.+|.+.+.+++.++...   +  +++..+.|+.+..|..
T Consensus       150 ~~---~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~--~~~~~lR~~~vyGp~~  200 (348)
T PRK15181        150 DL---PKIEERIGRPLSPYAVTKYVNELYADVFARSY---E--FNAIGLRYFNVFGRRQ  200 (348)
T ss_pred             CC---CCCCCCCCCCCChhhHHHHHHHHHHHHHHHHh---C--CCEEEEEecceeCcCC
Confidence            11   12233344456789999999888777765443   4  7888899999988753

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.80  E-value=5.3e-18  Score=149.37  Aligned_cols=193  Identities=13%  Similarity=0.107  Sum_probs=130.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCe-EEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           31 TAIVTGASSGIGTETARVLALRGVH-VIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ++|||||+|+||.+++++|+++|.+ |+.+++......  .+.+....++.++.++.+|++|.+++.+++++.     ++
T Consensus         2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~~   74 (352)
T PRK10084          2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGN--LESLADVSDSERYVFEHADICDRAELDRIFAQH-----QP   74 (352)
T ss_pred             eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccch--HHHHHhcccCCceEEEEecCCCHHHHHHHHHhc-----CC
Confidence            5999999999999999999999986 554554321100  111111112346788999999999999998863     69


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc--cC----ccC
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS--EG----IRF  183 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~--~~----~~~  183 (255)
                      |+|||+|+....  ..+.+...+.+++|+.|+.++++++.+++.+.....++..++|++||...+....  ..    ...
T Consensus        75 d~vih~A~~~~~--~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~  152 (352)
T PRK10084         75 DAVMHLAAESHV--DRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEEL  152 (352)
T ss_pred             CEEEECCcccCC--cchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccC
Confidence            999999986432  1222345678999999999999999987643111001234899999976443211  00    011


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      +.+.++.+..+...|+.+|.+.+.+++.++.++.     +.+..+.|+.+..|-
T Consensus       153 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g-----~~~vilr~~~v~Gp~  201 (352)
T PRK10084        153 PLFTETTAYAPSSPYSASKASSDHLVRAWLRTYG-----LPTIVTNCSNNYGPY  201 (352)
T ss_pred             CCccccCCCCCCChhHHHHHHHHHHHHHHHHHhC-----CCEEEEeccceeCCC
Confidence            2345556666778999999999999999877664     444446676666553

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.79  E-value=2.6e-18  Score=146.80  Aligned_cols=183  Identities=19%  Similarity=0.152  Sum_probs=132.2

Q ss_pred             EEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           33 IVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        33 lItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      |||||+|.||.+|+++|+++|  .+|.++++......  .+.+..   .....++.+|++|++++..+++       ++|
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~--~~~~~~---~~~~~~~~~Di~d~~~l~~a~~-------g~d   68 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF--LKDLQK---SGVKEYIQGDITDPESLEEALE-------GVD   68 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc--chhhhc---ccceeEEEeccccHHHHHHHhc-------CCc
Confidence            699999999999999999999  68988888765421  111111   1223499999999999999998       579


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES  190 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~  190 (255)
                      +|||+|+......   ....++++++|+.|+-+++++|...-.         .++|++||...+.......++..-++..
T Consensus        69 ~V~H~Aa~~~~~~---~~~~~~~~~vNV~GT~nvl~aa~~~~V---------krlVytSS~~vv~~~~~~~~~~~~dE~~  136 (280)
T PF01073_consen   69 VVFHTAAPVPPWG---DYPPEEYYKVNVDGTRNVLEAARKAGV---------KRLVYTSSISVVFDNYKGDPIINGDEDT  136 (280)
T ss_pred             eEEEeCccccccC---cccHHHHHHHHHHHHHHHHHHHHHcCC---------CEEEEEcCcceeEeccCCCCcccCCcCC
Confidence            9999998654322   345677899999999999999986533         3999999999876533344444333444


Q ss_pred             CCC--CccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          191 AYN--SFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       191 ~~~--~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      +.+  ....|+.||+..+.++......-.+.+..++..+|+|..|..|...
T Consensus       137 ~~~~~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~  187 (280)
T PF01073_consen  137 PYPSSPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQ  187 (280)
T ss_pred             cccccccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccc
Confidence            433  5568999998877766554431111233488888999999998543

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.79  E-value=8.9e-18  Score=145.19  Aligned_cols=181  Identities=15%  Similarity=0.105  Sum_probs=130.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccch-HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAA-GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +++||||+|+||.+++++|++.|  .+|++.+|.... ..+..+.+.   ...++.++.+|++|++++.++++..     
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~-----   72 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLE---DNPRYRFVKGDIGDRELVSRLFTEH-----   72 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhc---cCCCcEEEEcCCcCHHHHHHHHhhc-----
Confidence            48999999999999999999987  688888764321 111112221   1236788999999999999988864     


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+|||+|+....  ..+.+.+...+++|+.++.++++++.+.+.        ..++|++||...+.......   ++.
T Consensus        73 ~~d~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--------~~~~i~~Ss~~v~g~~~~~~---~~~  139 (317)
T TIGR01181        73 QPDAVVHFAAESHV--DRSISGPAAFIETNVVGTYTLLEAVRKYWH--------EFRFHHISTDEVYGDLEKGD---AFT  139 (317)
T ss_pred             CCCEEEEcccccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHhcCC--------CceEEEeeccceeCCCCCCC---CcC
Confidence            58999999986432  233455677899999999999988865542        24899999966433221111   233


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      +..+..+...|+.+|.+++.+++.++.+..     +++..+.|+.+..+.
T Consensus       140 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-----~~~~i~R~~~i~G~~  184 (317)
T TIGR01181       140 ETTPLAPSSPYSASKAASDHLVRAYHRTYG-----LPALITRCSNNYGPY  184 (317)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHhC-----CCeEEEEeccccCCC
Confidence            444555667899999999999988876653     677778999887764

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.78  E-value=4e-19  Score=150.00  Aligned_cols=168  Identities=22%  Similarity=0.267  Sum_probs=124.0

Q ss_pred             EEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceE----EEEeCCCCHHHHHHHHHHHhcCC
Q 025275           32 AIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVD----AMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ||||||+|.||++++++|++.+. ++++.++++.++-++.+++.+..++.++.    .+.+|++|.+.+..++++.    
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~----   76 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY----   76 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT------
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc----
Confidence            69999999999999999999996 69999999999999999987665554443    4578999999999999876    


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                       ++|+|+|.|+.-+.+  ...+.+.+.+++|+.|+.++++++..+-.+         ++|++|+--++            
T Consensus        77 -~pdiVfHaAA~KhVp--l~E~~p~eav~tNv~GT~nv~~aa~~~~v~---------~~v~ISTDKAv------------  132 (293)
T PF02719_consen   77 -KPDIVFHAAALKHVP--LMEDNPFEAVKTNVLGTQNVAEAAIEHGVE---------RFVFISTDKAV------------  132 (293)
T ss_dssp             -T-SEEEE------HH--HHCCCHHHHHHHHCHHHHHHHHHHHHTT-S---------EEEEEEECGCS------------
T ss_pred             -CCCEEEEChhcCCCC--hHHhCHHHHHHHHHHHHHHHHHHHHHcCCC---------EEEEccccccC------------
Confidence             799999999976533  223466788999999999999999987665         99999996543            


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceec
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVT  235 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t  235 (255)
                            .+...||+||...+.++.+++......+  .++.+|+=|.|..
T Consensus       133 ------~PtnvmGatKrlaE~l~~~~~~~~~~~~--t~f~~VRFGNVlg  173 (293)
T PF02719_consen  133 ------NPTNVMGATKRLAEKLVQAANQYSGNSD--TKFSSVRFGNVLG  173 (293)
T ss_dssp             ------S--SHHHHHHHHHHHHHHHHCCTSSSS----EEEEEEE-EETT
T ss_pred             ------CCCcHHHHHHHHHHHHHHHHhhhCCCCC--cEEEEEEecceec
Confidence                  3678999999999998888887775555  7787888777765

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=9.1e-18  Score=140.05  Aligned_cols=161  Identities=22%  Similarity=0.220  Sum_probs=130.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++|||||+|.||++.+.+|++.|++|++.|.-...-.+..+..       ...+++.|+.|.+.++++|++.     .|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~-------~~~f~~gDi~D~~~L~~vf~~~-----~i   68 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL-------QFKFYEGDLLDRALLTAVFEEN-----KI   68 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc-------cCceEEeccccHHHHHHHHHhc-----CC
Confidence            47999999999999999999999999999998766544443322       1579999999999999999986     79


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |.|||.||.....  .+.+...+.++.|+.|++.+++++...-.+         ++||-|| +++++.+...   ++.++
T Consensus        69 daViHFAa~~~Vg--ESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~---------~~vFSSt-AavYG~p~~~---PI~E~  133 (329)
T COG1087          69 DAVVHFAASISVG--ESVQNPLKYYDNNVVGTLNLIEAMLQTGVK---------KFIFSST-AAVYGEPTTS---PISET  133 (329)
T ss_pred             CEEEECccccccc--hhhhCHHHHHhhchHhHHHHHHHHHHhCCC---------EEEEecc-hhhcCCCCCc---ccCCC
Confidence            9999999974433  466778899999999999999998877654         7777666 4555655553   56677


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHh
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLK  217 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~  217 (255)
                      .+..+..+|+.||..++.+.+.++.-..
T Consensus       134 ~~~~p~NPYG~sKlm~E~iL~d~~~a~~  161 (329)
T COG1087         134 SPLAPINPYGRSKLMSEEILRDAAKANP  161 (329)
T ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHhCC
Confidence            7777888999999999998888876654

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.78  E-value=1.8e-17  Score=145.08  Aligned_cols=180  Identities=19%  Similarity=0.133  Sum_probs=124.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++|||||+|+||++++++|+++|++|++++|..+........+... ++.++.++.+|++|.+++..+++.     .++|
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~d   75 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIRNEALLTEILHD-----HAID   75 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHh-cCCCceEEEccCCCHHHHHHHHhc-----CCCC
Confidence            6999999999999999999999999999887544433333333322 234678899999999998888874     2699


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES  190 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~  190 (255)
                      +|||+|+.....  ...+...+.+++|+.++.++++++...         +.+++|++||...+ +....   .++++..
T Consensus        76 ~vvh~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~v~~Ss~~~y-g~~~~---~~~~E~~  140 (338)
T PRK10675         76 TVIHFAGLKAVG--ESVQKPLEYYDNNVNGTLRLISAMRAA---------NVKNLIFSSSATVY-GDQPK---IPYVESF  140 (338)
T ss_pred             EEEECCcccccc--chhhCHHHHHHHHHHHHHHHHHHHHHc---------CCCEEEEeccHHhh-CCCCC---Ccccccc
Confidence            999999875322  122345567899999999998765422         23489999996543 22211   2234444


Q ss_pred             CC-CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceec
Q 025275          191 AY-NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVT  235 (255)
Q Consensus       191 ~~-~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t  235 (255)
                      +. .+...|+.+|.+.+.+++.++.+..  +  +++..+.++.+..
T Consensus       141 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~--~--~~~~ilR~~~v~g  182 (338)
T PRK10675        141 PTGTPQSPYGKSKLMVEQILTDLQKAQP--D--WSIALLRYFNPVG  182 (338)
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHhcC--C--CcEEEEEeeeecC
Confidence            43 3567899999999999988866542  2  4555566544433

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=9.8e-18  Score=139.35  Aligned_cols=169  Identities=18%  Similarity=0.160  Sum_probs=130.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCe--EEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVH--VIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~--Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +++|||||.|+||.++++.+.++...  |+.++.-.  -....+.+.......+..+++.|++|.+.+.+++++.     
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLT--YAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~-----   73 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLT--YAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEY-----   73 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEeccc--ccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhc-----
Confidence            46899999999999999999998763  56666421  1111222222222458999999999999999999975     


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      .+|+++|-|+=.+  .+-+.......+++|+.|+++++.++..+..+        .|++.||.-..+.......  +..+
T Consensus        74 ~~D~VvhfAAESH--VDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~--------frf~HISTDEVYG~l~~~~--~~Ft  141 (340)
T COG1088          74 QPDAVVHFAAESH--VDRSIDGPAPFIQTNVVGTYTLLEAARKYWGK--------FRFHHISTDEVYGDLGLDD--DAFT  141 (340)
T ss_pred             CCCeEEEechhcc--ccccccChhhhhhcchHHHHHHHHHHHHhccc--------ceEEEeccccccccccCCC--CCcc
Confidence            6999999998543  45566667778999999999999999988853        5899999976554333221  1566


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHh
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLK  217 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~  217 (255)
                      +.++..+.++|++|||+..+|++++...++
T Consensus       142 E~tp~~PsSPYSASKAasD~lVray~~TYg  171 (340)
T COG1088         142 ETTPYNPSSPYSASKAASDLLVRAYVRTYG  171 (340)
T ss_pred             cCCCCCCCCCcchhhhhHHHHHHHHHHHcC
Confidence            788999999999999999999999988886

>PLN02686 cinnamoyl-CoA reductase

Probab=99.77  E-value=4.3e-17  Score=144.61  Aligned_cols=192  Identities=14%  Similarity=0.077  Sum_probs=132.2

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhC----CCCceEEEEeCCCCHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI----PSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      ...+.++|++|||||+|+||.+++++|+++|++|+++.|+.+..+.+ +++....    ....+.++.+|++|.+++..+
T Consensus        47 ~~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~  125 (367)
T PLN02686         47 AGADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEA  125 (367)
T ss_pred             cccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHH
Confidence            34567789999999999999999999999999999988886554433 2222110    012578899999999999888


Q ss_pred             HHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc-cccc
Q 025275           99 ASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH-RFAY  177 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~-~~~~  177 (255)
                      ++.       +|.+||+|+...+.....  ......++|+.++.++++++....        .-.++|++||..+ .++.
T Consensus       126 i~~-------~d~V~hlA~~~~~~~~~~--~~~~~~~~nv~gt~~llea~~~~~--------~v~r~V~~SS~~~~vyg~  188 (367)
T PLN02686        126 FDG-------CAGVFHTSAFVDPAGLSG--YTKSMAELEAKASENVIEACVRTE--------SVRKCVFTSSLLACVWRQ  188 (367)
T ss_pred             HHh-------ccEEEecCeeeccccccc--ccchhhhhhHHHHHHHHHHHHhcC--------CccEEEEeccHHHhcccc
Confidence            873       689999998653321111  112456789999999999876431        1238999999742 2221


Q ss_pred             --ccCccCCCCCcc------cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          178 --SEGIRFDKINDE------SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       178 --~~~~~~~~~~~~------~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                        +...+ ..+++.      .+..+...|+.+|.+.+.+++.++.+   .|  ++++.|+|+.+.+|..
T Consensus       189 ~~~~~~~-~~i~E~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g--l~~v~lRp~~vyGp~~  251 (367)
T PLN02686        189 NYPHDLP-PVIDEESWSDESFCRDNKLWYALGKLKAEKAAWRAARG---KG--LKLATICPALVTGPGF  251 (367)
T ss_pred             cCCCCCC-cccCCCCCCChhhcccccchHHHHHHHHHHHHHHHHHh---cC--ceEEEEcCCceECCCC
Confidence              11100 112221      12234567999999999888777654   35  9999999999999953

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.76  E-value=2.9e-17  Score=142.80  Aligned_cols=172  Identities=24%  Similarity=0.266  Sum_probs=126.2

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ++++||||+|+||.+++++|+++|++|++++|+.+....    +.    ...+.++.+|++|.+++.++++       .+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~----~~~~~~~~~D~~~~~~l~~~~~-------~~   65 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRN----LE----GLDVEIVEGDLRDPASLRKAVA-------GC   65 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccc----cc----cCCceEEEeeCCCHHHHHHHHh-------CC
Confidence            369999999999999999999999999999998764321    11    2257899999999998888776       47


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |++||+|+....    ..+++.+.+++|+.++.++++++...         ..+++|++||...+.......+   +++.
T Consensus        66 d~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~v~~SS~~~~~~~~~~~~---~~e~  129 (328)
T TIGR03466        66 RALFHVAADYRL----WAPDPEEMYAANVEGTRNLLRAALEA---------GVERVVYTSSVATLGVRGDGTP---ADET  129 (328)
T ss_pred             CEEEEeceeccc----CCCCHHHHHHHHHHHHHHHHHHHHHh---------CCCeEEEEechhhcCcCCCCCC---cCcc
Confidence            999999985322    12345677899999999999887632         2349999999876542222222   2233


Q ss_pred             cCCC---CccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          190 SAYN---SFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       190 ~~~~---~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .+..   ....|+.+|.+.+.+++.++.+.   +  +.+..++|+.+..+.
T Consensus       130 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~--~~~~ilR~~~~~G~~  175 (328)
T TIGR03466       130 TPSSLDDMIGHYKRSKFLAEQAALEMAAEK---G--LPVVIVNPSTPIGPR  175 (328)
T ss_pred             CCCCcccccChHHHHHHHHHHHHHHHHHhc---C--CCEEEEeCCccCCCC
Confidence            3332   24579999999998888776543   4  777779999887654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.74  E-value=1.6e-16  Score=131.78  Aligned_cols=174  Identities=22%  Similarity=0.276  Sum_probs=134.4

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeE
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNI  111 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~  111 (255)
                      ||||||+|.||.+++++|.++|..|+.+.|+.........+.       ++.++.+|+.|.++++.+++..     .+|+
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~-------~~~~~~~dl~~~~~~~~~~~~~-----~~d~   68 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKL-------NVEFVIGDLTDKEQLEKLLEKA-----NIDV   68 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHT-------TEEEEESETTSHHHHHHHHHHH-----TESE
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccc-------eEEEEEeecccccccccccccc-----CceE
Confidence            799999999999999999999999988888876543332221       6889999999999999999987     7999


Q ss_pred             EEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccC
Q 025275          112 LINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESA  191 (255)
Q Consensus       112 lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~  191 (255)
                      +||+|+...  ...+.+...+.++.|+.++.++++++...-.         .++|++||.. .++....   .+++++.+
T Consensus        69 vi~~a~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~---------~~~i~~sS~~-~y~~~~~---~~~~e~~~  133 (236)
T PF01370_consen   69 VIHLAAFSS--NPESFEDPEEIIEANVQGTRNLLEAAREAGV---------KRFIFLSSAS-VYGDPDG---EPIDEDSP  133 (236)
T ss_dssp             EEEEBSSSS--HHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT---------SEEEEEEEGG-GGTSSSS---SSBETTSG
T ss_pred             EEEeecccc--ccccccccccccccccccccccccccccccc---------cccccccccc-ccccccc---cccccccc
Confidence            999998643  1122356677888999999999888874443         4999999944 3332222   23445555


Q ss_pred             CCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          192 YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       192 ~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      ..+...|+.+|...+.+++.+....   +  +++..+.|+.+..+.
T Consensus       134 ~~~~~~Y~~~K~~~e~~~~~~~~~~---~--~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  134 INPLSPYGASKRAAEELLRDYAKKY---G--LRVTILRPPNVYGPG  174 (236)
T ss_dssp             CCHSSHHHHHHHHHHHHHHHHHHHH---T--SEEEEEEESEEESTT
T ss_pred             ccccccccccccccccccccccccc---c--ccccccccccccccc
Confidence            5667779999999888888776655   3  888889999999988

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.74  E-value=9e-17  Score=139.44  Aligned_cols=179  Identities=20%  Similarity=0.216  Sum_probs=128.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++|||||+|+||.+++++|+++|++|++.+|..............   ..++.++.+|+++.+++.++++.     +++|
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~-----~~~d   72 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGER---ITRVTFVEGDLRDRELLDRLFEE-----HKID   72 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhcc---ccceEEEECCCCCHHHHHHHHHh-----CCCc
Confidence            479999999999999999999999998887654332222222221   11577889999999999988874     3699


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES  190 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~  190 (255)
                      ++|||||.....  .+.+...+.++.|+.++..+++++.+.         +..++|++||...+ +....   ..++++.
T Consensus        73 ~vv~~ag~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~v~~ss~~~~-g~~~~---~~~~e~~  137 (328)
T TIGR01179        73 AVIHFAGLIAVG--ESVQDPLKYYRNNVVNTLNLLEAMQQT---------GVKKFIFSSSAAVY-GEPSS---IPISEDS  137 (328)
T ss_pred             EEEECccccCcc--hhhcCchhhhhhhHHHHHHHHHHHHhc---------CCCEEEEecchhhc-CCCCC---CCccccC
Confidence            999999975332  123345567899999999998876432         23589999886543 22211   1244455


Q ss_pred             CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          191 AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       191 ~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      +..+...|+.+|++++.+++.++.+.  .+  +++..+.|+.+..+
T Consensus       138 ~~~~~~~y~~sK~~~e~~~~~~~~~~--~~--~~~~ilR~~~v~g~  179 (328)
T TIGR01179       138 PLGPINPYGRSKLMSERILRDLSKAD--PG--LSYVILRYFNVAGA  179 (328)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHhc--cC--CCEEEEecCcccCC
Confidence            55567789999999999998886652  23  77777998877765

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PLN02427 UDP-apiose/xylose synthase

Probab=99.72  E-value=3e-16  Score=140.03  Aligned_cols=185  Identities=13%  Similarity=0.086  Sum_probs=122.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+.++||||||+|.||++++++|+++ |++|++++|+.+......+...... ..++.++.+|++|.+.+.++++     
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~-----   85 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPW-SGRIQFHRINIKHDSRLEGLIK-----   85 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccC-CCCeEEEEcCCCChHHHHHHhh-----
Confidence            45568999999999999999999998 5899999987654332211100000 2368999999999998888776     


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC-----
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG-----  180 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~-----  180 (255)
                        .+|+|||+|+...+.. . .....+.+..|+.++.++++++...          +.++|++||...+ +....     
T Consensus        86 --~~d~ViHlAa~~~~~~-~-~~~~~~~~~~n~~gt~~ll~aa~~~----------~~r~v~~SS~~vY-g~~~~~~~~e  150 (386)
T PLN02427         86 --MADLTINLAAICTPAD-Y-NTRPLDTIYSNFIDALPVVKYCSEN----------NKRLIHFSTCEVY-GKTIGSFLPK  150 (386)
T ss_pred             --cCCEEEEcccccChhh-h-hhChHHHHHHHHHHHHHHHHHHHhc----------CCEEEEEeeeeee-CCCcCCCCCc
Confidence              3799999998654321 1 1122345678999999998877532          1389999997643 22111     


Q ss_pred             -ccCCC------CCcc-cCC------CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          181 -IRFDK------INDE-SAY------NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       181 -~~~~~------~~~~-~~~------~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                       .+..+      +.++ .+.      .+...|+.+|.+.+.+++.++..   .+  +.+..++|+.+..|.
T Consensus       151 ~~p~~~~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g--~~~~ilR~~~vyGp~  216 (386)
T PLN02427        151 DHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAE---NG--LEFTIVRPFNWIGPR  216 (386)
T ss_pred             ccccccccccccccccccccccCCCCccccchHHHHHHHHHHHHHHHhh---cC--CceEEecccceeCCC
Confidence             11100      0000 000      12347999999988877665433   34  778889999999875

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.70  E-value=5.6e-16  Score=130.60  Aligned_cols=169  Identities=20%  Similarity=0.209  Sum_probs=132.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +++||||||+|.||.|.+.+|.++|+.|+++|.-.....+..+.+++..+ +..+.+++.|++|.+.++++|+..     
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~-----   76 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEV-----   76 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhc-----
Confidence            57899999999999999999999999999999766666666666665543 468999999999999999999987     


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      .+|.|+|-|+.....  .+.+.....+..|+.|+++++..+..+-.+         .+|+.||.. +++.+...|++   
T Consensus        77 ~fd~V~Hfa~~~~vg--eS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~---------~~V~sssat-vYG~p~~ip~t---  141 (343)
T KOG1371|consen   77 KFDAVMHFAALAAVG--ESMENPLSYYHNNIAGTLNLLEVMKAHNVK---------ALVFSSSAT-VYGLPTKVPIT---  141 (343)
T ss_pred             CCceEEeehhhhccc--hhhhCchhheehhhhhHHHHHHHHHHcCCc---------eEEEeccee-eecCcceeecc---
Confidence            699999999875433  334445778999999999999888766643         788877755 55566554444   


Q ss_pred             cccCCC-CccchHHhHHHHHHHHHHHHHHHh
Q 025275          188 DESAYN-SFGAYGQSKLANILHAKELAKHLK  217 (255)
Q Consensus       188 ~~~~~~-~~~~Y~~sKaa~~~l~~~la~~~~  217 (255)
                      +..+.. +...|+.+|.+++...+....-+.
T Consensus       142 e~~~t~~p~~pyg~tK~~iE~i~~d~~~~~~  172 (343)
T KOG1371|consen  142 EEDPTDQPTNPYGKTKKAIEEIIHDYNKAYG  172 (343)
T ss_pred             CcCCCCCCCCcchhhhHHHHHHHHhhhcccc
Confidence            333333 678999999999988887766554

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.69  E-value=1.5e-15  Score=134.79  Aligned_cols=179  Identities=18%  Similarity=0.116  Sum_probs=123.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++|++|||||+|.||++++++|.++|++|++++|.....      +...  .....++.+|++|.+++..+++       
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~------~~~~--~~~~~~~~~Dl~d~~~~~~~~~-------   84 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEH------MSED--MFCHEFHLVDLRVMENCLKVTK-------   84 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccc------cccc--cccceEEECCCCCHHHHHHHHh-------
Confidence            678999999999999999999999999999999864321      0000  1125678899999887776664       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc-CCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR-FDKI  186 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~-~~~~  186 (255)
                      .+|+|||+|+...... .........+..|+.++.++++++...-         ..++|++||...+. .....+ -.++
T Consensus        85 ~~D~Vih~Aa~~~~~~-~~~~~~~~~~~~N~~~t~nll~aa~~~~---------vk~~V~~SS~~vYg-~~~~~~~~~~~  153 (370)
T PLN02695         85 GVDHVFNLAADMGGMG-FIQSNHSVIMYNNTMISFNMLEAARING---------VKRFFYASSACIYP-EFKQLETNVSL  153 (370)
T ss_pred             CCCEEEEcccccCCcc-ccccCchhhHHHHHHHHHHHHHHHHHhC---------CCEEEEeCchhhcC-CccccCcCCCc
Confidence            4799999998543211 1111223456789999999998875332         24999999975432 211111 0112


Q ss_pred             Cccc--CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          187 NDES--AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       187 ~~~~--~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .++.  +..+...|+.+|.+.+.+++.++..+   +  +.+..+.|+.+..|-
T Consensus       154 ~E~~~~p~~p~s~Yg~sK~~~E~~~~~~~~~~---g--~~~~ilR~~~vyGp~  201 (370)
T PLN02695        154 KESDAWPAEPQDAYGLEKLATEELCKHYTKDF---G--IECRIGRFHNIYGPF  201 (370)
T ss_pred             CcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---C--CCEEEEEECCccCCC
Confidence            2222  44566789999999888888765543   4  777789999888874

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.69  E-value=1.1e-15  Score=128.66  Aligned_cols=171  Identities=19%  Similarity=0.176  Sum_probs=111.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCH-HHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL-ASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~si~~~~~~~~~  104 (255)
                      ...+++++||||+|+||++++++|+++|++|+++.|+.++.....    ..  +..+.++++|++|. +++...+   . 
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~----~~--~~~~~~~~~Dl~d~~~~l~~~~---~-   83 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL----PQ--DPSLQIVRADVTEGSDKLVEAI---G-   83 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc----cc--CCceEEEEeeCCCCHHHHHHHh---h-
Confidence            355789999999999999999999999999999999876533221    11  23688999999983 3332222   1 


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                        .++|+||+++|......   .   ...+++|..+..++++++.    +     .+.++||++||...+....      
T Consensus        84 --~~~d~vi~~~g~~~~~~---~---~~~~~~n~~~~~~ll~a~~----~-----~~~~~iV~iSS~~v~g~~~------  140 (251)
T PLN00141         84 --DDSDAVICATGFRRSFD---P---FAPWKVDNFGTVNLVEACR----K-----AGVTRFILVSSILVNGAAM------  140 (251)
T ss_pred             --cCCCEEEECCCCCcCCC---C---CCceeeehHHHHHHHHHHH----H-----cCCCEEEEEccccccCCCc------
Confidence              25899999998642211   1   1124678888888888864    2     2346999999986432110      


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHH-HHHHHH-HhhCCCcEEEEEeeCCceecCc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHA-KELAKH-LKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~-~~la~~-~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                            +......|...|.....+. +..+.+ +...+  ++++.|+||++.++.
T Consensus       141 ------~~~~~~~~~~~~~~~~~~~~k~~~e~~l~~~g--i~~~iirpg~~~~~~  187 (251)
T PLN00141        141 ------GQILNPAYIFLNLFGLTLVAKLQAEKYIRKSG--INYTIVRPGGLTNDP  187 (251)
T ss_pred             ------ccccCcchhHHHHHHHHHHHHHHHHHHHHhcC--CcEEEEECCCccCCC
Confidence                  1112234555554333322 222222 45556  999999999998764

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.69  E-value=1.4e-15  Score=144.77  Aligned_cols=188  Identities=13%  Similarity=0.049  Sum_probs=128.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHc--CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALR--GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .+.|+||||||+|.||++++++|+++  |++|++++|.... .. .+.+.......++.++.+|++|.+.+..++..   
T Consensus         4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~-~~-~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~---   78 (668)
T PLN02260          4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYC-SN-LKNLNPSKSSPNFKFVKGDIASADLVNYLLIT---   78 (668)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCcc-ch-hhhhhhcccCCCeEEEECCCCChHHHHHHHhh---
Confidence            35689999999999999999999998  5789888875311 11 11111111134688999999999887776543   


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                        .++|+|||+|+.....  .+..+..+.+++|+.++.++++++...-        ...++|++||...+. .....+..
T Consensus        79 --~~~D~ViHlAa~~~~~--~~~~~~~~~~~~Nv~gt~~ll~a~~~~~--------~vkr~I~~SS~~vyg-~~~~~~~~  145 (668)
T PLN02260         79 --EGIDTIMHFAAQTHVD--NSFGNSFEFTKNNIYGTHVLLEACKVTG--------QIRRFIHVSTDEVYG-ETDEDADV  145 (668)
T ss_pred             --cCCCEEEECCCccCch--hhhhCHHHHHHHHHHHHHHHHHHHHhcC--------CCcEEEEEcchHHhC-CCcccccc
Confidence              2699999999975432  1223345678999999999998875321        134999999976443 22111111


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      ...+..+..+...|+.+|.+.+.+++.+...+   +  +.+..+.|+.+..+-
T Consensus       146 ~~~E~~~~~p~~~Y~~sK~~aE~~v~~~~~~~---~--l~~vilR~~~VyGp~  193 (668)
T PLN02260        146 GNHEASQLLPTNPYSATKAGAEMLVMAYGRSY---G--LPVITTRGNNVYGPN  193 (668)
T ss_pred             CccccCCCCCCCCcHHHHHHHHHHHHHHHHHc---C--CCEEEECcccccCcC
Confidence            12233344456789999999998888776554   3  667779999888764

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.68  E-value=1.1e-15  Score=132.01  Aligned_cols=176  Identities=20%  Similarity=0.127  Sum_probs=126.8

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeE
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNI  111 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~  111 (255)
                      +|||||+|.||.+++++|.++|++|+.++|.........         ..+.++.+|+++.+.+....+..      .|+
T Consensus         3 ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~------~d~   67 (314)
T COG0451           3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL---------SGVEFVVLDLTDRDLVDELAKGV------PDA   67 (314)
T ss_pred             EEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc---------cccceeeecccchHHHHHHHhcC------CCE
Confidence            999999999999999999999999999999876543322         25678999999986666555532      199


Q ss_pred             EEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc-c
Q 025275          112 LINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE-S  190 (255)
Q Consensus       112 lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~-~  190 (255)
                      +||+|+.......... ...+.+.+|+.++.++++++...-         ..++|+.||.+.+......   ..+.++ .
T Consensus        68 vih~aa~~~~~~~~~~-~~~~~~~~nv~gt~~ll~aa~~~~---------~~~~v~~ss~~~~~~~~~~---~~~~E~~~  134 (314)
T COG0451          68 VIHLAAQSSVPDSNAS-DPAEFLDVNVDGTLNLLEAARAAG---------VKRFVFASSVSVVYGDPPP---LPIDEDLG  134 (314)
T ss_pred             EEEccccCchhhhhhh-CHHHHHHHHHHHHHHHHHHHHHcC---------CCeEEEeCCCceECCCCCC---CCcccccC
Confidence            9999997654322222 455689999999999999998622         3488886665544432111   123333 3


Q ss_pred             CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          191 AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       191 ~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      +..+...|+.+|...+.+++....   ..+  +.+..+.|+.+..|....
T Consensus       135 ~~~p~~~Yg~sK~~~E~~~~~~~~---~~~--~~~~ilR~~~vyGp~~~~  179 (314)
T COG0451         135 PPRPLNPYGVSKLAAEQLLRAYAR---LYG--LPVVILRPFNVYGPGDKP  179 (314)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH---HhC--CCeEEEeeeeeeCCCCCC
Confidence            444444799999999988888877   344  777779999888776443

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.68  E-value=1.4e-15  Score=133.93  Aligned_cols=173  Identities=9%  Similarity=0.027  Sum_probs=118.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCC-CHHHHHHHHHHHhcCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS-SLASVRKFASEYNSQGR  107 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~si~~~~~~~~~~~g  107 (255)
                      +++|||||+|.||++++++|++. |++|++++|+.+...    .+   .+...+.++.+|++ +.+.+..+++       
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~----~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-------   67 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLG----DL---VNHPRMHFFEGDITINKEWIEYHVK-------   67 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHH----Hh---ccCCCeEEEeCCCCCCHHHHHHHHc-------
Confidence            57999999999999999999986 689999998654321    11   11335889999998 6666665554       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+|||+|+...+..  ..++....+++|+.++.+++.++...          +.++|++||...+ +.....+   +.
T Consensus        68 ~~d~ViH~aa~~~~~~--~~~~p~~~~~~n~~~~~~ll~aa~~~----------~~~~v~~SS~~vy-g~~~~~~---~~  131 (347)
T PRK11908         68 KCDVILPLVAIATPAT--YVKQPLRVFELDFEANLPIVRSAVKY----------GKHLVFPSTSEVY-GMCPDEE---FD  131 (347)
T ss_pred             CCCEEEECcccCChHH--hhcCcHHHHHHHHHHHHHHHHHHHhc----------CCeEEEEecceee-ccCCCcC---cC
Confidence            4899999998643321  12344567899999999988877532          1399999997543 3222211   11


Q ss_pred             ccc------C-CCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          188 DES------A-YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       188 ~~~------~-~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      ++.      + ..+...|+.+|.+.+.+++.++...   +  +.+..+.|+.+..|.
T Consensus       132 ee~~~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~--~~~~ilR~~~v~Gp~  183 (347)
T PRK11908        132 PEASPLVYGPINKPRWIYACSKQLMDRVIWAYGMEE---G--LNFTLFRPFNWIGPG  183 (347)
T ss_pred             ccccccccCcCCCccchHHHHHHHHHHHHHHHHHHc---C--CCeEEEeeeeeeCCC
Confidence            211      1 1234579999999888877765443   4  556668888887764

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.68  E-value=1.1e-15  Score=145.16  Aligned_cols=179  Identities=11%  Similarity=0.032  Sum_probs=125.7

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHH-HHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLAS-VRKFASE  101 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s-i~~~~~~  101 (255)
                      ..-.++++||||||+|.||.+++++|+++ |++|+.++|.......    +   ....++.++.+|++|... ++.+++ 
T Consensus       310 ~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~----~---~~~~~~~~~~gDl~d~~~~l~~~l~-  381 (660)
T PRK08125        310 CSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR----F---LGHPRFHFVEGDISIHSEWIEYHIK-  381 (660)
T ss_pred             hhhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh----h---cCCCceEEEeccccCcHHHHHHHhc-
Confidence            33357889999999999999999999986 7999999987643221    1   112368889999998654 344443 


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                            ++|+|||+|+...+..  ..+...+.+++|+.++.++++++....          .++|++||...+ +.....
T Consensus       382 ------~~D~ViHlAa~~~~~~--~~~~~~~~~~~Nv~~t~~ll~a~~~~~----------~~~V~~SS~~vy-g~~~~~  442 (660)
T PRK08125        382 ------KCDVVLPLVAIATPIE--YTRNPLRVFELDFEENLKIIRYCVKYN----------KRIIFPSTSEVY-GMCTDK  442 (660)
T ss_pred             ------CCCEEEECccccCchh--hccCHHHHHHhhHHHHHHHHHHHHhcC----------CeEEEEcchhhc-CCCCCC
Confidence                  5899999999754321  122335678999999999999887431          389999997543 322211


Q ss_pred             cCCCCCcccC------C-CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          182 RFDKINDESA------Y-NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       182 ~~~~~~~~~~------~-~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                         +++++.+      . .+...|+.+|.+.+.+++.++..+   +  +++..+.|+.+..|.
T Consensus       443 ---~~~E~~~~~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~---g--~~~~ilR~~~vyGp~  497 (660)
T PRK08125        443 ---YFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKE---G--LRFTLFRPFNWMGPR  497 (660)
T ss_pred             ---CcCccccccccCCCCCCccchHHHHHHHHHHHHHHHHhc---C--CceEEEEEceeeCCC
Confidence               2233322      1 234579999999888888776554   4  777789999988874

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.67  E-value=1.3e-15  Score=131.74  Aligned_cols=171  Identities=18%  Similarity=0.187  Sum_probs=116.3

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc--CCCCe
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS--QGRPL  109 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~--~~g~i  109 (255)
                      +|||||+|.||++++++|+++|++++++.|+.+.....            ..+..+|+.|..+.+.+++++.+  .++++
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   69 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF------------VNLVDLDIADYMDKEDFLAQIMAGDDFGDI   69 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH------------HhhhhhhhhhhhhHHHHHHHHhcccccCCc
Confidence            79999999999999999999999776666654332110            01234577776666666665542  34679


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+|+..... ..+   ....++.|+.++.++++++...          +.++|++||...+. .+..   ..+++.
T Consensus        70 d~Vih~A~~~~~~-~~~---~~~~~~~n~~~t~~ll~~~~~~----------~~~~i~~SS~~vyg-~~~~---~~~~E~  131 (308)
T PRK11150         70 EAIFHEGACSSTT-EWD---GKYMMDNNYQYSKELLHYCLER----------EIPFLYASSAATYG-GRTD---DFIEER  131 (308)
T ss_pred             cEEEECceecCCc-CCC---hHHHHHHHHHHHHHHHHHHHHc----------CCcEEEEcchHHhC-cCCC---CCCccC
Confidence            9999999864322 122   2346899999999999888531          23799999986543 2211   123344


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .+..+...|+.+|.+.+.+++.++.+.   +  +.+..+.|+.+..+.
T Consensus       132 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~~lR~~~vyG~~  174 (308)
T PRK11150        132 EYEKPLNVYGYSKFLFDEYVRQILPEA---N--SQICGFRYFNVYGPR  174 (308)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHc---C--CCEEEEeeeeecCCC
Confidence            455566789999999888877765443   4  677778888888764

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.66  E-value=3.9e-15  Score=131.04  Aligned_cols=179  Identities=22%  Similarity=0.228  Sum_probs=118.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchH---HHHHHHHHhhC---C--C-CceEEEEeCCCCHH------
Q 025275           31 TAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAG---KDVREAIVKEI---P--S-AKVDAMELDVSSLA------   93 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~---~~~~~~~~~~~---~--~-~~~~~~~~Dl~~~~------   93 (255)
                      +++||||+|+||.+++++|+++|  .+|+++.|+.+..   +...+.+....   .  . .++.++.+|++++.      
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            48999999999999999999999  6799999986532   12222222110   0  1 47899999998652      


Q ss_pred             HHHHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275           94 SVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus        94 si~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                      ....+.       ..+|++||||+.....     ..+.+..++|+.++.++++.+....         ..+++++||...
T Consensus        81 ~~~~~~-------~~~d~vih~a~~~~~~-----~~~~~~~~~nv~g~~~ll~~a~~~~---------~~~~v~iSS~~v  139 (367)
T TIGR01746        81 EWERLA-------ENVDTIVHNGALVNWV-----YPYSELRAANVLGTREVLRLAASGR---------AKPLHYVSTISV  139 (367)
T ss_pred             HHHHHH-------hhCCEEEeCCcEeccC-----CcHHHHhhhhhHHHHHHHHHHhhCC---------CceEEEEccccc
Confidence            333322       2689999999864321     2345678899999999988775422         236999999876


Q ss_pred             ccccccCc-cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          174 RFAYSEGI-RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       174 ~~~~~~~~-~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      ........ ..+.............|+.+|.+.+.+++.++.    .|  ++++.++||.+.++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~g--~~~~i~Rpg~v~G~  197 (367)
T TIGR01746       140 LAAIDLSTVTEDDAIVTPPPGLAGGYAQSKWVAELLVREASD----RG--LPVTIVRPGRILGN  197 (367)
T ss_pred             cCCcCCCCccccccccccccccCCChHHHHHHHHHHHHHHHh----cC--CCEEEECCCceeec
Confidence            54211100 000000001112245799999998887766533    35  88899999999986

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.64  E-value=4.3e-15  Score=128.28  Aligned_cols=142  Identities=18%  Similarity=0.162  Sum_probs=105.2

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++|||||+|.||++++++|.++| +|+.++|...                   .+..|++|.+++.+++++.     ++
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-------------------~~~~Dl~d~~~~~~~~~~~-----~~   55 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST-------------------DYCGDFSNPEGVAETVRKI-----RP   55 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-------------------cccCCCCCHHHHHHHHHhc-----CC
Confidence            369999999999999999999999 7888877531                   2346999999999888864     58


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+|+.....  ...++....+++|+.++.++++++...          +.++|++||...+.+ ...   .+++++
T Consensus        56 D~Vih~Aa~~~~~--~~~~~~~~~~~~N~~~~~~l~~aa~~~----------g~~~v~~Ss~~Vy~~-~~~---~p~~E~  119 (299)
T PRK09987         56 DVIVNAAAHTAVD--KAESEPEFAQLLNATSVEAIAKAANEV----------GAWVVHYSTDYVFPG-TGD---IPWQET  119 (299)
T ss_pred             CEEEECCccCCcc--hhhcCHHHHHHHHHHHHHHHHHHHHHc----------CCeEEEEccceEECC-CCC---CCcCCC
Confidence            9999999975432  222344566789999999999887642          238999998764322 222   234455


Q ss_pred             cCCCCccchHHhHHHHHHHHHHH
Q 025275          190 SAYNSFGAYGQSKLANILHAKEL  212 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~l  212 (255)
                      .+..+...|+.+|.+.+.+++.+
T Consensus       120 ~~~~P~~~Yg~sK~~~E~~~~~~  142 (299)
T PRK09987        120 DATAPLNVYGETKLAGEKALQEH  142 (299)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHh
Confidence            55666778999999988777654

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.64  E-value=1.4e-14  Score=131.31  Aligned_cols=182  Identities=14%  Similarity=0.100  Sum_probs=121.0

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .++.-++++||||||+|.||++++++|+++|++|++++|......+   .+.......++.++..|+.+..     +   
T Consensus       113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~---~~~~~~~~~~~~~i~~D~~~~~-----l---  181 (442)
T PLN02206        113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKE---NVMHHFSNPNFELIRHDVVEPI-----L---  181 (442)
T ss_pred             cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchh---hhhhhccCCceEEEECCccChh-----h---
Confidence            4445578999999999999999999999999999999876432211   1111112345788888987652     1   


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                          ..+|+|||+|+...+..  ..++..+.+++|+.++.++++++...          +.++|++||...+. .+...+
T Consensus       182 ----~~~D~ViHlAa~~~~~~--~~~~p~~~~~~Nv~gt~nLleaa~~~----------g~r~V~~SS~~VYg-~~~~~p  244 (442)
T PLN02206        182 ----LEVDQIYHLACPASPVH--YKFNPVKTIKTNVVGTLNMLGLAKRV----------GARFLLTSTSEVYG-DPLQHP  244 (442)
T ss_pred             ----cCCCEEEEeeeecchhh--hhcCHHHHHHHHHHHHHHHHHHHHHh----------CCEEEEECChHHhC-CCCCCC
Confidence                14899999998654321  12234678999999999999888532          13899999976443 221111


Q ss_pred             CCCCC--cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          183 FDKIN--DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       183 ~~~~~--~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      ..+-+  ...+..+...|+.+|.+.+.+++.+....   +  +++..+.|+.+..|.
T Consensus       245 ~~E~~~~~~~P~~~~s~Y~~SK~~aE~~~~~y~~~~---g--~~~~ilR~~~vyGp~  296 (442)
T PLN02206        245 QVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---N--VEVRIARIFNTYGPR  296 (442)
T ss_pred             CCccccccCCCCCccchHHHHHHHHHHHHHHHHHHh---C--CCeEEEEeccccCCC
Confidence            11110  11233445789999999888777664443   4  666667877776653

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.63  E-value=1.3e-14  Score=129.71  Aligned_cols=164  Identities=16%  Similarity=0.171  Sum_probs=116.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHH--HHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKD--VREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++++||||+|+||++++++|+++|++|++++|+......  ..+++...  ...+.++.+|++|++++..+++++. 
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~~-  134 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE--LPGAEVVFGDVTDADSLRKVLFSEG-  134 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhh--cCCceEEEeeCCCHHHHHHHHHHhC-
Confidence            467899999999999999999999999999999998754321  11222222  2368899999999999999988641 


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                        +++|+||||++.....       ..+.+++|+.++.++++++...         +.+++|++||.....         
T Consensus       135 --~~~D~Vi~~aa~~~~~-------~~~~~~vn~~~~~~ll~aa~~~---------gv~r~V~iSS~~v~~---------  187 (390)
T PLN02657        135 --DPVDVVVSCLASRTGG-------VKDSWKIDYQATKNSLDAGREV---------GAKHFVLLSAICVQK---------  187 (390)
T ss_pred             --CCCcEEEECCccCCCC-------CccchhhHHHHHHHHHHHHHHc---------CCCEEEEEeeccccC---------
Confidence              1699999999853211       1123567888888888776422         235899999976321         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                               +...|..+|...+...+.     ...+  ++...|+|+.+..+
T Consensus       188 ---------p~~~~~~sK~~~E~~l~~-----~~~g--l~~tIlRp~~~~~~  223 (390)
T PLN02657        188 ---------PLLEFQRAKLKFEAELQA-----LDSD--FTYSIVRPTAFFKS  223 (390)
T ss_pred             ---------cchHHHHHHHHHHHHHHh-----ccCC--CCEEEEccHHHhcc
Confidence                     334678888776655433     2244  77777999876654

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.63  E-value=1.1e-14  Score=124.49  Aligned_cols=154  Identities=21%  Similarity=0.247  Sum_probs=113.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++|||||+|+||.+++++|.++|++|++++|+                       .+|+.+.+++.++++.+     .+|
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~-----------------------~~d~~~~~~~~~~~~~~-----~~d   52 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSS-----------------------QLDLTDPEALERLLRAI-----RPD   52 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc-----------------------ccCCCCHHHHHHHHHhC-----CCC
Confidence            37999999999999999999999999999874                       36999999999998864     589


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES  190 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~  190 (255)
                      ++||+|+.....  .........+++|+.++.++++++...          +.++|++||...+. ....   .++++..
T Consensus        53 ~vi~~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~~~v~~Ss~~vy~-~~~~---~~~~E~~  116 (287)
T TIGR01214        53 AVVNTAAYTDVD--GAESDPEKAFAVNALAPQNLARAAARH----------GARLVHISTDYVFD-GEGK---RPYREDD  116 (287)
T ss_pred             EEEECCcccccc--ccccCHHHHHHHHHHHHHHHHHHHHHc----------CCeEEEEeeeeeec-CCCC---CCCCCCC
Confidence            999999864321  122335567899999999999887521          23899999965432 2111   2333444


Q ss_pred             CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          191 AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       191 ~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      +..+...|+.+|...+.+++.+       +  ..+..++|+.+..+.
T Consensus       117 ~~~~~~~Y~~~K~~~E~~~~~~-------~--~~~~ilR~~~v~G~~  154 (287)
T TIGR01214       117 ATNPLNVYGQSKLAGEQAIRAA-------G--PNALIVRTSWLYGGG  154 (287)
T ss_pred             CCCCcchhhHHHHHHHHHHHHh-------C--CCeEEEEeeecccCC
Confidence            4455678999999888777654       2  345568898887664

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.62  E-value=2.5e-14  Score=129.43  Aligned_cols=182  Identities=15%  Similarity=0.101  Sum_probs=121.6

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .++.-+.+++|||||+|.||++++++|+++|++|++++|...........+   ....++.++..|+.+..     +   
T Consensus       114 ~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~---~~~~~~~~~~~Di~~~~-----~---  182 (436)
T PLN02166        114 VGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHL---FGNPRFELIRHDVVEPI-----L---  182 (436)
T ss_pred             cccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhh---ccCCceEEEECcccccc-----c---
Confidence            444456789999999999999999999999999999998643222211111   11235778888887642     1   


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                          .++|+|||+|+...+..  ...+..+.+++|+.++.++++++...          +.++|++||...+ +.+...+
T Consensus       183 ----~~~D~ViHlAa~~~~~~--~~~~p~~~~~~Nv~gT~nLleaa~~~----------g~r~V~~SS~~VY-g~~~~~p  245 (436)
T PLN02166        183 ----LEVDQIYHLACPASPVH--YKYNPVKTIKTNVMGTLNMLGLAKRV----------GARFLLTSTSEVY-GDPLEHP  245 (436)
T ss_pred             ----cCCCEEEECceeccchh--hccCHHHHHHHHHHHHHHHHHHHHHh----------CCEEEEECcHHHh-CCCCCCC
Confidence                25899999998654322  12234678999999999999888643          1289999997544 3222222


Q ss_pred             CCCCC--cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          183 FDKIN--DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       183 ~~~~~--~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .++-+  ...+..+...|+.+|.+.+.+++.+....   +  +.+..+.|+.+..+.
T Consensus       246 ~~E~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~~---~--l~~~ilR~~~vYGp~  297 (436)
T PLN02166        246 QKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGA---G--VEVRIARIFNTYGPR  297 (436)
T ss_pred             CCccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh---C--CCeEEEEEccccCCC
Confidence            11111  11344456789999999888887765433   4  566668887777764

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.60  E-value=1.3e-14  Score=125.20  Aligned_cols=159  Identities=16%  Similarity=0.107  Sum_probs=113.1

Q ss_pred             EEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeEE
Q 025275           33 IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNIL  112 (255)
Q Consensus        33 lItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~l  112 (255)
                      |||||+|.||.+++++|+++|.+|+++.+.                      ..+|++|.++++.+++..     ++|+|
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~----------------------~~~Dl~~~~~l~~~~~~~-----~~d~V   53 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH----------------------KELDLTRQADVEAFFAKE-----KPTYV   53 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCcEEEeecc----------------------ccCCCCCHHHHHHHHhcc-----CCCEE
Confidence            699999999999999999999987766422                      137999999998888863     58999


Q ss_pred             EEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc--
Q 025275          113 INNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES--  190 (255)
Q Consensus       113 v~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~--  190 (255)
                      ||+|+...... ...+...+.++.|+.++.++++++...-         ..++|++||... ++....   .+++++.  
T Consensus        54 ih~A~~~~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~~~~---------~~~~i~~SS~~v-yg~~~~---~~~~E~~~~  119 (306)
T PLN02725         54 ILAAAKVGGIH-ANMTYPADFIRENLQIQTNVIDAAYRHG---------VKKLLFLGSSCI-YPKFAP---QPIPETALL  119 (306)
T ss_pred             EEeeeeecccc-hhhhCcHHHHHHHhHHHHHHHHHHHHcC---------CCeEEEeCceee-cCCCCC---CCCCHHHhc
Confidence            99998643211 1122344678899999999998886432         248999999653 332222   2233332  


Q ss_pred             --CCCC-ccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          191 --AYNS-FGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       191 --~~~~-~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                        +..+ ...|+.+|.+.+.+++.+....   +  +++..+.|+.+..+.
T Consensus       120 ~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~---~--~~~~~~R~~~vyG~~  164 (306)
T PLN02725        120 TGPPEPTNEWYAIAKIAGIKMCQAYRIQY---G--WDAISGMPTNLYGPH  164 (306)
T ss_pred             cCCCCCCcchHHHHHHHHHHHHHHHHHHh---C--CCEEEEEecceeCCC
Confidence              2222 2359999999888777765444   4  778889999998874

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.59  E-value=7.7e-14  Score=120.70  Aligned_cols=172  Identities=12%  Similarity=0.065  Sum_probs=114.7

Q ss_pred             EEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           32 AIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      +|||||+|.||.+++++|.++|+ .|++++|..... .    +...  .  ...+..|+++.+.++.+.++   .+..+|
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~----~~~~--~--~~~~~~d~~~~~~~~~~~~~---~~~~~D   68 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-K----FLNL--A--DLVIADYIDKEDFLDRLEKG---AFGKIE   68 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-h----hhhh--h--heeeeccCcchhHHHHHHhh---ccCCCC
Confidence            68999999999999999999998 688887764321 1    1111  1  13466788887766665553   345799


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES  190 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~  190 (255)
                      +|||+|+....    +.++....+++|+.++.++++++...          +.++|++||...+ +... .   ++.++.
T Consensus        69 ~vvh~A~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----------~~~~v~~SS~~vy-~~~~-~---~~~e~~  129 (314)
T TIGR02197        69 AIFHQGACSDT----TETDGEYMMENNYQYSKRLLDWCAEK----------GIPFIYASSAATY-GDGE-A---GFREGR  129 (314)
T ss_pred             EEEECccccCc----cccchHHHHHHHHHHHHHHHHHHHHh----------CCcEEEEccHHhc-CCCC-C---Cccccc
Confidence            99999996432    23345678899999999999887632          2379999996543 3221 1   122222


Q ss_pred             C-CCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          191 A-YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       191 ~-~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      + ..+...|+.+|.+.+.+++....... .+  +.+..+.|+.+..+.
T Consensus       130 ~~~~p~~~Y~~sK~~~e~~~~~~~~~~~-~~--~~~~~lR~~~vyG~~  174 (314)
T TIGR02197       130 ELERPLNVYGYSKFLFDQYVRRRVLPEA-LS--AQVVGLRYFNVYGPR  174 (314)
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHhHhhc-cC--CceEEEEEeeccCCC
Confidence            2 23567899999998887775332211 12  566668888777764

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=99.55  E-value=6.4e-14  Score=121.78  Aligned_cols=183  Identities=16%  Similarity=0.156  Sum_probs=130.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++.+++||||+|.+|++++++|.+.+  .++.+.+..+....- .++..... ..++..+++|+.|..++...++     
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~-~~e~~~~~-~~~v~~~~~D~~~~~~i~~a~~-----   75 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNL-PAELTGFR-SGRVTVILGDLLDANSISNAFQ-----   75 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCcccccc-chhhhccc-CCceeEEecchhhhhhhhhhcc-----
Confidence            46799999999999999999999999  689999887642111 11211111 4579999999999998888887     


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                        ++ .+||+|....+.  ....+.+..+++|+.|+.+++.+|...-.+         ++|++||...+....+   ...
T Consensus        76 --~~-~Vvh~aa~~~~~--~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~---------~lIYtSs~~Vvf~g~~---~~n  138 (361)
T KOG1430|consen   76 --GA-VVVHCAASPVPD--FVENDRDLAMRVNVNGTLNVIEACKELGVK---------RLIYTSSAYVVFGGEP---IIN  138 (361)
T ss_pred             --Cc-eEEEeccccCcc--ccccchhhheeecchhHHHHHHHHHHhCCC---------EEEEecCceEEeCCee---ccc
Confidence              46 677777654332  222255678999999999999999877766         9999999987764443   222


Q ss_pred             CCcccCCC--CccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          186 INDESAYN--SFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       186 ~~~~~~~~--~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      -++..+++  ....|+.||+--+.+++....   ..+  ....+++|-.|..|--.
T Consensus       139 ~~E~~p~p~~~~d~Y~~sKa~aE~~Vl~an~---~~~--l~T~aLR~~~IYGpgd~  189 (361)
T KOG1430|consen  139 GDESLPYPLKHIDPYGESKALAEKLVLEANG---SDD--LYTCALRPPGIYGPGDK  189 (361)
T ss_pred             CCCCCCCccccccccchHHHHHHHHHHHhcC---CCC--eeEEEEccccccCCCCc
Confidence            23333443  345899999776665554443   333  78888999988887543

>PLN02996 fatty acyl-CoA reductase

Probab=99.53  E-value=4.2e-13  Score=123.20  Aligned_cols=185  Identities=15%  Similarity=0.119  Sum_probs=121.5

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC---eEEEEEeccch--HHHHH-HHH---------HhhCC-------CCceEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV---HVIMAVRNMAA--GKDVR-EAI---------VKEIP-------SAKVDA   84 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~---~Vi~~~r~~~~--~~~~~-~~~---------~~~~~-------~~~~~~   84 (255)
                      ++||+++||||||.||++++.+|++.+.   +|+++.|....  ..+.. .++         .+..+       ..++.+
T Consensus         9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~   88 (491)
T PLN02996          9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP   88 (491)
T ss_pred             hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence            6899999999999999999999998653   58899987542  11111 111         11111       147899


Q ss_pred             EEeCCCC-------HHHHHHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025275           85 MELDVSS-------LASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQ  157 (255)
Q Consensus        85 ~~~Dl~~-------~~si~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~  157 (255)
                      +..|+++       .+.++.+++       .+|+|||+|+.....     +.....+++|+.|+.++++++...-     
T Consensus        89 i~GDl~~~~LGLs~~~~~~~l~~-------~vD~ViH~AA~v~~~-----~~~~~~~~~Nv~gt~~ll~~a~~~~-----  151 (491)
T PLN02996         89 VPGDISYDDLGVKDSNLREEMWK-------EIDIVVNLAATTNFD-----ERYDVALGINTLGALNVLNFAKKCV-----  151 (491)
T ss_pred             EecccCCcCCCCChHHHHHHHHh-------CCCEEEECccccCCc-----CCHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence            9999984       333444444       489999999865421     2456789999999999998886431     


Q ss_pred             cCCCCCeEEEecCCccccccc---cCccCCCCC------------------------------c-----------cc---
Q 025275          158 KSSREGRIVNVSSEAHRFAYS---EGIRFDKIN------------------------------D-----------ES---  190 (255)
Q Consensus       158 ~~~~~g~ii~vsS~~~~~~~~---~~~~~~~~~------------------------------~-----------~~---  190 (255)
                         ...++|++||...+....   ...++++..                              +           .+   
T Consensus       152 ---~~k~~V~vST~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (491)
T PLN02996        152 ---KVKMLLHVSTAYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAK  228 (491)
T ss_pred             ---CCCeEEEEeeeEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHH
Confidence               123899999977553211   122222100                              0           00   


Q ss_pred             CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          191 AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       191 ~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .......|+.||+..+.+++..    . .+  +.+..++|..|..+.-
T Consensus       229 ~~~~pn~Y~~TK~~aE~lv~~~----~-~~--lpv~i~RP~~V~G~~~  269 (491)
T PLN02996        229 LHGWPNTYVFTKAMGEMLLGNF----K-EN--LPLVIIRPTMITSTYK  269 (491)
T ss_pred             hCCCCCchHhhHHHHHHHHHHh----c-CC--CCEEEECCCEeccCCc
Confidence            1112246999999988877654    2 24  7777899999988763

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.53  E-value=1e-13  Score=116.61  Aligned_cols=175  Identities=19%  Similarity=0.191  Sum_probs=101.4

Q ss_pred             EecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhh---C---------CCCceEEEEeCCCCHH------
Q 025275           34 VTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKE---I---------PSAKVDAMELDVSSLA------   93 (255)
Q Consensus        34 ItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~---~---------~~~~~~~~~~Dl~~~~------   93 (255)
                      ||||||.||.++.++|++.+.  +|+++.|.... +...+.+.+.   .         ...+++++..|++++.      
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~-~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~   79 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSS-QSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDE   79 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSH-HHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCccc-ccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChH
Confidence            799999999999999999987  89999998643 2233333211   0         1468999999999853      


Q ss_pred             HHHHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275           94 SVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus        94 si~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                      ..+.+.+       .+|++||||+......     .+.+..++|+.|+.++++.+...         +..+++++|| +.
T Consensus        80 ~~~~L~~-------~v~~IiH~Aa~v~~~~-----~~~~~~~~NV~gt~~ll~la~~~---------~~~~~~~iST-a~  137 (249)
T PF07993_consen   80 DYQELAE-------EVDVIIHCAASVNFNA-----PYSELRAVNVDGTRNLLRLAAQG---------KRKRFHYIST-AY  137 (249)
T ss_dssp             HHHHHHH-------H--EEEE--SS-SBS------S--EEHHHHHHHHHHHHHHHTSS---------S---EEEEEE-GG
T ss_pred             Hhhcccc-------ccceeeecchhhhhcc-----cchhhhhhHHHHHHHHHHHHHhc---------cCcceEEecc-cc
Confidence            3344434       4899999998653322     33446889999999999888621         1229999999 33


Q ss_pred             ccccccCcc------CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          174 RFAYSEGIR------FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       174 ~~~~~~~~~------~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      ..+......      ...............|..||...+.+++..+.+.   |  +.+..++||.|-..
T Consensus       138 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~---g--~p~~I~Rp~~i~g~  201 (249)
T PF07993_consen  138 VAGSRPGTIEEKVYPEEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRH---G--LPVTIYRPGIIVGD  201 (249)
T ss_dssp             GTTS-TTT--SSS-HHH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH--------EEEEEE-EEE-S
T ss_pred             ccCCCCCcccccccccccccchhhccCCccHHHHHHHHHHHHHHHHhcC---C--ceEEEEecCccccc
Confidence            332222110      1111222233444689999999888888776553   4  66777999998883

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.51  E-value=8.8e-13  Score=125.38  Aligned_cols=176  Identities=20%  Similarity=0.151  Sum_probs=115.2

Q ss_pred             EEEEecCCCchHHHHHHHHH--HcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHH--HHHHHHHHhcCC
Q 025275           31 TAIVTGASSGIGTETARVLA--LRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLAS--VRKFASEYNSQG  106 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~--~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s--i~~~~~~~~~~~  106 (255)
                      ++|||||+|.||++++++|+  +.|++|++++|+... .. .+.+.......++.++..|++|++.  ....++++    
T Consensus         2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~-~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l----   75 (657)
T PRK07201          2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SR-LEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL----   75 (657)
T ss_pred             eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HH-HHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh----
Confidence            69999999999999999999  588999999996532 22 2222222112478999999998531  01122222    


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      ..+|+|||+|+.....  .   ...+..++|+.++.++++++...-         ..++|++||...+.....  ++.+.
T Consensus        76 ~~~D~Vih~Aa~~~~~--~---~~~~~~~~nv~gt~~ll~~a~~~~---------~~~~v~~SS~~v~g~~~~--~~~e~  139 (657)
T PRK07201         76 GDIDHVVHLAAIYDLT--A---DEEAQRAANVDGTRNVVELAERLQ---------AATFHHVSSIAVAGDYEG--VFRED  139 (657)
T ss_pred             cCCCEEEECceeecCC--C---CHHHHHHHHhHHHHHHHHHHHhcC---------CCeEEEEeccccccCccC--ccccc
Confidence            2699999999964321  1   234567899999999988875322         348999999765432111  11111


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      ....+......|+.+|...+.+++.      ..+  +.+..+.|+.+..+
T Consensus       140 ~~~~~~~~~~~Y~~sK~~~E~~~~~------~~g--~~~~ilRp~~v~G~  181 (657)
T PRK07201        140 DFDEGQGLPTPYHRTKFEAEKLVRE------ECG--LPWRVYRPAVVVGD  181 (657)
T ss_pred             cchhhcCCCCchHHHHHHHHHHHHH------cCC--CcEEEEcCCeeeec
Confidence            1111222345799999998877653      234  77777999999875

>PLN02778 3,5-epimerase/4-reductase

Probab=99.51  E-value=9.3e-13  Score=113.68  Aligned_cols=142  Identities=15%  Similarity=0.132  Sum_probs=95.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++|||||+|.||.+++++|.++|.+|++..                          .|++|.+.+...+++.     ++
T Consensus        10 ~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~--------------------------~~~~~~~~v~~~l~~~-----~~   58 (298)
T PLN02778         10 LKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS--------------------------GRLENRASLEADIDAV-----KP   58 (298)
T ss_pred             CeEEEECCCCHHHHHHHHHHHhCCCEEEEec--------------------------CccCCHHHHHHHHHhc-----CC
Confidence            6799999999999999999999999986421                          2445556666666543     68


Q ss_pred             eEEEEccCCCCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc---CCC
Q 025275          110 NILINNAGIMASPF-MLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR---FDK  185 (255)
Q Consensus       110 d~lv~~ag~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~---~~~  185 (255)
                      |+|||+|+...... +...+...+.+++|+.++.++++++...-          .+.+++||.. +++.....+   ..+
T Consensus        59 D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~g----------v~~v~~sS~~-vy~~~~~~p~~~~~~  127 (298)
T PLN02778         59 THVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERG----------LVLTNYATGC-IFEYDDAHPLGSGIG  127 (298)
T ss_pred             CEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC----------CCEEEEecce-EeCCCCCCCcccCCC
Confidence            99999999764321 22334567889999999999999986432          1345555533 222211111   112


Q ss_pred             CCcc-cCCCCccchHHhHHHHHHHHHHHH
Q 025275          186 INDE-SAYNSFGAYGQSKLANILHAKELA  213 (255)
Q Consensus       186 ~~~~-~~~~~~~~Y~~sKaa~~~l~~~la  213 (255)
                      +.++ .+.++...|+.+|.+.+.+++.++
T Consensus       128 ~~Ee~~p~~~~s~Yg~sK~~~E~~~~~y~  156 (298)
T PLN02778        128 FKEEDTPNFTGSFYSKTKAMVEELLKNYE  156 (298)
T ss_pred             CCcCCCCCCCCCchHHHHHHHHHHHHHhh
Confidence            3322 233344689999999998888764

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.50  E-value=3e-13  Score=117.64  Aligned_cols=149  Identities=15%  Similarity=0.116  Sum_probs=105.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      +++||||+|.||++++++|+++|++|.+++|+.+...    .+.    ...+.++.+|++|++++..+++       ++|
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~----~l~----~~~v~~v~~Dl~d~~~l~~al~-------g~d   66 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKAS----FLK----EWGAELVYGDLSLPETLPPSFK-------GVT   66 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhh----hHh----hcCCEEEECCCCCHHHHHHHHC-------CCC
Confidence            6999999999999999999999999999999865422    111    1257899999999998887776       589


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES  190 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~  190 (255)
                      +|||+++....       +.....++|+.++.++++++...-.         .++|++||..+..               
T Consensus        67 ~Vi~~~~~~~~-------~~~~~~~~~~~~~~~l~~aa~~~gv---------kr~I~~Ss~~~~~---------------  115 (317)
T CHL00194         67 AIIDASTSRPS-------DLYNAKQIDWDGKLALIEAAKAAKI---------KRFIFFSILNAEQ---------------  115 (317)
T ss_pred             EEEECCCCCCC-------CccchhhhhHHHHHHHHHHHHHcCC---------CEEEEeccccccc---------------
Confidence            99998764211       1233567788999888887764332         3999998854211               


Q ss_pred             CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          191 AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       191 ~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                       . +...|..+|...+.+.+       ..+  +....+.|+.+...
T Consensus       116 -~-~~~~~~~~K~~~e~~l~-------~~~--l~~tilRp~~~~~~  150 (317)
T CHL00194        116 -Y-PYIPLMKLKSDIEQKLK-------KSG--IPYTIFRLAGFFQG  150 (317)
T ss_pred             -c-CCChHHHHHHHHHHHHH-------HcC--CCeEEEeecHHhhh
Confidence             0 22457788877655432       234  66666888855443

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.50  E-value=1.7e-13  Score=117.60  Aligned_cols=154  Identities=23%  Similarity=0.310  Sum_probs=104.3

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++|||||+|.||.++.++|.+.|++|+.++|.                       .+|++|.+++.+++++.     ++
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~-----------------------~~dl~d~~~~~~~~~~~-----~p   52 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRS-----------------------DLDLTDPEAVAKLLEAF-----KP   52 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT-----------------------CS-TTSHHHHHHHHHHH-------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch-----------------------hcCCCCHHHHHHHHHHh-----CC
Confidence            479999999999999999999999999888666                       57999999999999987     69


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||||+...+  +...++....+++|+.++.++++++..          .+.++|++||.....+. ..   .+..++
T Consensus        53 d~Vin~aa~~~~--~~ce~~p~~a~~iN~~~~~~la~~~~~----------~~~~li~~STd~VFdG~-~~---~~y~E~  116 (286)
T PF04321_consen   53 DVVINCAAYTNV--DACEKNPEEAYAINVDATKNLAEACKE----------RGARLIHISTDYVFDGD-KG---GPYTED  116 (286)
T ss_dssp             SEEEE------H--HHHHHSHHHHHHHHTHHHHHHHHHHHH----------CT-EEEEEEEGGGS-SS-TS---SSB-TT
T ss_pred             CeEeccceeecH--HhhhhChhhhHHHhhHHHHHHHHHHHH----------cCCcEEEeeccEEEcCC-cc---cccccC
Confidence            999999987421  233456778899999999999998873          24599999997644322 11   123344


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      .+..+...|+.+|...+..++.    ..++   ..|  ++++++..+
T Consensus       117 d~~~P~~~YG~~K~~~E~~v~~----~~~~---~~I--lR~~~~~g~  154 (286)
T PF04321_consen  117 DPPNPLNVYGRSKLEGEQAVRA----ACPN---ALI--LRTSWVYGP  154 (286)
T ss_dssp             S----SSHHHHHHHHHHHHHHH----H-SS---EEE--EEE-SEESS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH----hcCC---EEE--Eecceeccc
Confidence            4556778999999887766555    2221   333  666766665

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=99.47  E-value=1.3e-12  Score=110.07  Aligned_cols=136  Identities=27%  Similarity=0.328  Sum_probs=107.2

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeE
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNI  111 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~  111 (255)
                      +||||++|-+|.++.+.|. .+++|+.++|..                       +|++|.+++..++++.     +||+
T Consensus         3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~-----------------------~Ditd~~~v~~~i~~~-----~PDv   53 (281)
T COG1091           3 ILITGANGQLGTELRRALP-GEFEVIATDRAE-----------------------LDITDPDAVLEVIRET-----RPDV   53 (281)
T ss_pred             EEEEcCCChHHHHHHHHhC-CCceEEeccCcc-----------------------ccccChHHHHHHHHhh-----CCCE
Confidence            9999999999999999998 668999888764                       6999999999999998     7999


Q ss_pred             EEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccC
Q 025275          112 LINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESA  191 (255)
Q Consensus       112 lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~  191 (255)
                      |||+|++..  .+....+.+..+.+|..|+.++++++.+.          +..+|++|+-+..-+.. +.+   ..+...
T Consensus        54 VIn~AAyt~--vD~aE~~~e~A~~vNa~~~~~lA~aa~~~----------ga~lVhiSTDyVFDG~~-~~~---Y~E~D~  117 (281)
T COG1091          54 VINAAAYTA--VDKAESEPELAFAVNATGAENLARAAAEV----------GARLVHISTDYVFDGEK-GGP---YKETDT  117 (281)
T ss_pred             EEECccccc--cccccCCHHHHHHhHHHHHHHHHHHHHHh----------CCeEEEeecceEecCCC-CCC---CCCCCC
Confidence            999999753  33445567888999999999999999744          44899999977543222 122   223334


Q ss_pred             CCCccchHHhHHHHHHHHHHH
Q 025275          192 YNSFGAYGQSKLANILHAKEL  212 (255)
Q Consensus       192 ~~~~~~Y~~sKaa~~~l~~~l  212 (255)
                      ..+...||.||.+.+..++..
T Consensus       118 ~~P~nvYG~sKl~GE~~v~~~  138 (281)
T COG1091         118 PNPLNVYGRSKLAGEEAVRAA  138 (281)
T ss_pred             CCChhhhhHHHHHHHHHHHHh
Confidence            556779999998877766655

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=99.42  E-value=2.5e-12  Score=106.56  Aligned_cols=181  Identities=14%  Similarity=0.096  Sum_probs=129.3

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .....+++++||||+|+||++++.+|...|.+||+++.-...-.+..+.+..   ..++..+.-|+..+     ++.   
T Consensus        22 ~~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~---~~~fel~~hdv~~p-----l~~---   90 (350)
T KOG1429|consen   22 VKPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIG---HPNFELIRHDVVEP-----LLK---   90 (350)
T ss_pred             ccCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhcc---CcceeEEEeechhH-----HHH---
Confidence            3445679999999999999999999999999999999876655555554433   34677888888765     444   


Q ss_pred             cCCCCeeEEEEccCCCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          104 SQGRPLNILINNAGIMASP-FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                          .+|.++|.|....|. +..+   ..+.+..|+.++++++..+.+..          .|++..|+.. +++.|...|
T Consensus        91 ----evD~IyhLAapasp~~y~~n---pvktIktN~igtln~lglakrv~----------aR~l~aSTse-VYgdp~~hp  152 (350)
T KOG1429|consen   91 ----EVDQIYHLAAPASPPHYKYN---PVKTIKTNVIGTLNMLGLAKRVG----------ARFLLASTSE-VYGDPLVHP  152 (350)
T ss_pred             ----HhhhhhhhccCCCCcccccC---ccceeeecchhhHHHHHHHHHhC----------ceEEEeeccc-ccCCcccCC
Confidence                368899999877553 3233   34679999999999998887554          3777776644 555566666


Q ss_pred             CCCCCccc--CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          183 FDKINDES--AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       183 ~~~~~~~~--~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      ..+.++..  +..+.+.|...|...+.|+.....+.   |  |.+....+..+..|.+
T Consensus       153 q~e~ywg~vnpigpr~cydegKr~aE~L~~~y~k~~---g--iE~rIaRifNtyGPrm  205 (350)
T KOG1429|consen  153 QVETYWGNVNPIGPRSCYDEGKRVAETLCYAYHKQE---G--IEVRIARIFNTYGPRM  205 (350)
T ss_pred             CccccccccCcCCchhhhhHHHHHHHHHHHHhhccc---C--cEEEEEeeecccCCcc
Confidence            66555543  33567899999988777776655444   4  4444467766666644

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.40  E-value=2.6e-11  Score=96.90  Aligned_cols=151  Identities=25%  Similarity=0.252  Sum_probs=104.2

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeE
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNI  111 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~  111 (255)
                      |+|+||||.+|+.++++|+++|++|+++.|++++.++          ..+++++.+|+.|.+++.++++       +.|+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al~-------~~d~   63 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAALK-------GADA   63 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHHT-------TSSE
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhhh-------hcch
Confidence            6899999999999999999999999999999887655          3378999999999988888887       5899


Q ss_pred             EEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccC
Q 025275          112 LINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESA  191 (255)
Q Consensus       112 lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~  191 (255)
                      +|+++|....      +             ...++.++..+++     .+..++|++|+..........      .....
T Consensus        64 vi~~~~~~~~------~-------------~~~~~~~~~a~~~-----~~~~~~v~~s~~~~~~~~~~~------~~~~~  113 (183)
T PF13460_consen   64 VIHAAGPPPK------D-------------VDAAKNIIEAAKK-----AGVKRVVYLSSAGVYRDPPGL------FSDED  113 (183)
T ss_dssp             EEECCHSTTT------H-------------HHHHHHHHHHHHH-----TTSSEEEEEEETTGTTTCTSE------EEGGT
T ss_pred             hhhhhhhhcc------c-------------ccccccccccccc-----cccccceeeeccccCCCCCcc------ccccc
Confidence            9999975322      1             3344555555555     234599999987754421110      00001


Q ss_pred             CCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          192 YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       192 ~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .+....|...|...+.+       +...+  ++...++|+++..+..
T Consensus       114 ~~~~~~~~~~~~~~e~~-------~~~~~--~~~~ivrp~~~~~~~~  151 (183)
T PF13460_consen  114 KPIFPEYARDKREAEEA-------LRESG--LNWTIVRPGWIYGNPS  151 (183)
T ss_dssp             CGGGHHHHHHHHHHHHH-------HHHST--SEEEEEEESEEEBTTS
T ss_pred             ccchhhhHHHHHHHHHH-------HHhcC--CCEEEEECcEeEeCCC
Confidence            11123455555443322       23345  8888899999988863

...

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.37  E-value=3.1e-12  Score=106.09  Aligned_cols=169  Identities=14%  Similarity=0.146  Sum_probs=123.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhh--CCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE--IPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+|++||||-||--|..+|+.|+++|+.|..+.|.........-.+...  ..+.+++....|++|..++.++++++   
T Consensus         1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v---   77 (345)
T COG1089           1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV---   77 (345)
T ss_pred             CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhc---
Confidence            3699999999999999999999999999999998754332221112111  12446889999999999999999998   


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                        .+|-+.|.|+...  ...+.++.....+++..|+++++.+..-.-.       +..++..-||+.- ++   .-.-.+
T Consensus        78 --~PdEIYNLaAQS~--V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~-------~~~rfYQAStSE~-fG---~v~~~p  142 (345)
T COG1089          78 --QPDEIYNLAAQSH--VGVSFEQPEYTADVDAIGTLRLLEAIRILGE-------KKTRFYQASTSEL-YG---LVQEIP  142 (345)
T ss_pred             --Cchhheecccccc--ccccccCcceeeeechhHHHHHHHHHHHhCC-------cccEEEecccHHh-hc---CcccCc
Confidence              7999999998643  3466777778899999999999988764432       2457776666432 22   112335


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHH
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAK  214 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~  214 (255)
                      .++.+|+.+.++|+++|.-..-++.....
T Consensus       143 q~E~TPFyPrSPYAvAKlYa~W~tvNYRe  171 (345)
T COG1089         143 QKETTPFYPRSPYAVAKLYAYWITVNYRE  171 (345)
T ss_pred             cccCCCCCCCCHHHHHHHHHHheeeehHh
Confidence            67888999999999999554444444433

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.37  E-value=3.9e-11  Score=111.77  Aligned_cols=128  Identities=12%  Similarity=0.122  Sum_probs=90.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC---eEEEEEeccch--HHHHH-HHH---------HhhCC-------CCceEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV---HVIMAVRNMAA--GKDVR-EAI---------VKEIP-------SAKVDA   84 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~---~Vi~~~r~~~~--~~~~~-~~~---------~~~~~-------~~~~~~   84 (255)
                      +++|+++||||||.||++++++|++.+.   +|+++.|....  ..+.. +++         ++..+       ..++.+
T Consensus       117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~  196 (605)
T PLN02503        117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP  196 (605)
T ss_pred             hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence            4899999999999999999999998764   68999886432  22222 121         22222       247899


Q ss_pred             EEeCCCCHH------HHHHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025275           85 MELDVSSLA------SVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQK  158 (255)
Q Consensus        85 ~~~Dl~~~~------si~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~  158 (255)
                      +..|+++++      ..+.+.+       .+|+|||+|+....     .+.+...+++|+.|+.++++.+...-      
T Consensus       197 v~GDl~d~~LGLs~~~~~~L~~-------~vDiVIH~AA~v~f-----~~~~~~a~~vNV~GT~nLLelA~~~~------  258 (605)
T PLN02503        197 VVGNVCESNLGLEPDLADEIAK-------EVDVIINSAANTTF-----DERYDVAIDINTRGPCHLMSFAKKCK------  258 (605)
T ss_pred             EEeeCCCcccCCCHHHHHHHHh-------cCCEEEECcccccc-----ccCHHHHHHHHHHHHHHHHHHHHHcC------
Confidence            999999872      2333332       48999999986431     13467789999999999998876432      


Q ss_pred             CCCCCeEEEecCCccc
Q 025275          159 SSREGRIVNVSSEAHR  174 (255)
Q Consensus       159 ~~~~g~ii~vsS~~~~  174 (255)
                        ...++|++||...+
T Consensus       259 --~lk~fV~vSTayVy  272 (605)
T PLN02503        259 --KLKLFLQVSTAYVN  272 (605)
T ss_pred             --CCCeEEEccCceee
Confidence              12379999987644

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.35  E-value=3.2e-11  Score=115.04  Aligned_cols=155  Identities=13%  Similarity=0.102  Sum_probs=104.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ..+++|||||+|.||++++++|.++|++|.+.                          ..|++|.+++...+.+.     
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~--------------------------~~~l~d~~~v~~~i~~~-----  427 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG--------------------------KGRLEDRSSLLADIRNV-----  427 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCCeEEee--------------------------ccccccHHHHHHHHHhh-----
Confidence            44679999999999999999999999887211                          13678888888887765     


Q ss_pred             CeeEEEEccCCCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc---C
Q 025275          108 PLNILINNAGIMASP-FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR---F  183 (255)
Q Consensus       108 ~id~lv~~ag~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~---~  183 (255)
                      ++|+|||+|+....+ .+...++..+.+++|+.++.++++++...-          .++|++||... +......+   -
T Consensus       428 ~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g----------~~~v~~Ss~~v-~~~~~~~~~~~~  496 (668)
T PLN02260        428 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENG----------LLMMNFATGCI-FEYDAKHPEGSG  496 (668)
T ss_pred             CCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcC----------CeEEEEcccce-ecCCcccccccC
Confidence            699999999976432 234455667889999999999999987432          25666666432 22110000   0


Q ss_pred             CCCCccc-CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEee
Q 025275          184 DKINDES-AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLH  229 (255)
Q Consensus       184 ~~~~~~~-~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~  229 (255)
                      .++.++. +.+....|+.+|.+.+.+++.+...   ..  +|+..+.
T Consensus       497 ~p~~E~~~~~~~~~~Yg~sK~~~E~~~~~~~~~---~~--~r~~~~~  538 (668)
T PLN02260        497 IGFKEEDKPNFTGSFYSKTKAMVEELLREYDNV---CT--LRVRMPI  538 (668)
T ss_pred             CCCCcCCCCCCCCChhhHHHHHHHHHHHhhhhh---eE--EEEEEec
Confidence            1233332 3333478999999999888776422   22  5555554

>PRK05865 hypothetical protein; Provisional

Probab=99.34  E-value=2.3e-11  Score=116.98  Aligned_cols=131  Identities=18%  Similarity=0.158  Sum_probs=98.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ++++||||+|+||++++++|+++|++|++++|+....      +     ..++.++.+|++|.+++..+++       .+
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~------~-----~~~v~~v~gDL~D~~~l~~al~-------~v   62 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS------W-----PSSADFIAADIRDATAVESAMT-------GA   62 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh------c-----ccCceEEEeeCCCHHHHHHHHh-------CC
Confidence            3699999999999999999999999999999875321      1     1257889999999999888876       48


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+|+...+           .+++|+.++.++++++.    +     .+.+++|++||..                 
T Consensus        63 D~VVHlAa~~~~-----------~~~vNv~GT~nLLeAa~----~-----~gvkr~V~iSS~~-----------------  105 (854)
T PRK05865         63 DVVAHCAWVRGR-----------NDHINIDGTANVLKAMA----E-----TGTGRIVFTSSGH-----------------  105 (854)
T ss_pred             CEEEECCCcccc-----------hHHHHHHHHHHHHHHHH----H-----cCCCeEEEECCcH-----------------
Confidence            999999975321           36789999988876654    2     1235899998821                 


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                                  |.+.+.+++       ..+  +.+..+.|+.+..+
T Consensus       106 ------------K~aaE~ll~-------~~g--l~~vILRp~~VYGP  131 (854)
T PRK05865        106 ------------QPRVEQMLA-------DCG--LEWVAVRCALIFGR  131 (854)
T ss_pred             ------------HHHHHHHHH-------HcC--CCEEEEEeceEeCC
Confidence                        666554442       234  67777888888876

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=99.34  E-value=2.2e-11  Score=104.08  Aligned_cols=168  Identities=14%  Similarity=0.076  Sum_probs=97.4

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeE
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNI  111 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~  111 (255)
                      +|||||+|.||.+++++|++.|++|++++|+.+......        .  ..+  .|+.. ...       .+....+|+
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~--~~~--~~~~~-~~~-------~~~~~~~D~   60 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK--------W--EGY--KPWAP-LAE-------SEALEGADA   60 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc--------c--eee--ecccc-cch-------hhhcCCCCE
Confidence            589999999999999999999999999999876532210        0  011  12222 111       122346999


Q ss_pred             EEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccC
Q 025275          112 LINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESA  191 (255)
Q Consensus       112 lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~  191 (255)
                      |||+|+..........+.....+++|+.++.++++++...-.       +...+|+.|+ .+.++.....   ++.++.+
T Consensus        61 Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-------~~~~~i~~S~-~~~yg~~~~~---~~~E~~~  129 (292)
T TIGR01777        61 VINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQ-------KPKVFISASA-VGYYGTSEDR---VFTEEDS  129 (292)
T ss_pred             EEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCC-------CceEEEEeee-EEEeCCCCCC---CcCcccC
Confidence            999999643322234455667789999999888888753311       1113443433 3333322211   2333332


Q ss_pred             CCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          192 YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       192 ~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      ..+...|+..+...+...+    .+...+  +.+..+.|+.+..+
T Consensus       130 ~~~~~~~~~~~~~~e~~~~----~~~~~~--~~~~ilR~~~v~G~  168 (292)
T TIGR01777       130 PAGDDFLAELCRDWEEAAQ----AAEDLG--TRVVLLRTGIVLGP  168 (292)
T ss_pred             CCCCChHHHHHHHHHHHhh----hchhcC--CceEEEeeeeEECC
Confidence            2223334444433333222    223334  77888999999876

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=99.27  E-value=7.6e-10  Score=84.83  Aligned_cols=183  Identities=15%  Similarity=0.041  Sum_probs=128.1

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC--
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG--  106 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~--  106 (255)
                      -.+|+|.||-|.+|.+|++.|..+++-|.-++..+...            .+.-+.+.-|-+=.++-+.+..++.+..  
T Consensus         3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~------------Ad~sI~V~~~~swtEQe~~v~~~vg~sL~g   70 (236)
T KOG4022|consen    3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQ------------ADSSILVDGNKSWTEQEQSVLEQVGSSLQG   70 (236)
T ss_pred             CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccc------------ccceEEecCCcchhHHHHHHHHHHHHhhcc
Confidence            35799999999999999999999999888887765431            1122334334443455666677776544  


Q ss_pred             CCeeEEEEccCCCCCCCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          107 RPLNILINNAGIMASPFMLS---KDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ..+|.++..||.+......+   .+..+.+++..+...-...+.+..+++.       +|-+-..+.-++..        
T Consensus        71 ekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~-------GGLL~LtGAkaAl~--------  135 (236)
T KOG4022|consen   71 EKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKP-------GGLLQLTGAKAALG--------  135 (236)
T ss_pred             cccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCC-------CceeeecccccccC--------
Confidence            36999999999874322222   2345567888888888888877777753       44444444444333        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILR  245 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~~~  245 (255)
                             +.++.-.|+++|+|+..++++++.+-..--.+-.+..|-|-..+|||.|+|=|..
T Consensus       136 -------gTPgMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKwMP~A  190 (236)
T KOG4022|consen  136 -------GTPGMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKWMPNA  190 (236)
T ss_pred             -------CCCcccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccccccCCCC
Confidence                   5567789999999999999999876432111266778999999999999887653

>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function

Probab=99.27  E-value=5e-10  Score=95.24  Aligned_cols=183  Identities=16%  Similarity=0.144  Sum_probs=136.5

Q ss_pred             CcEEEEecC-CCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           29 GLTAIVTGA-SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        29 ~k~vlItG~-s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ..+|||.|. +.-+++.+|..|-++|+-|+++..+.+..+...++-     ...+.....|..++.++...+.+..+...
T Consensus         3 ~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e~-----~~dI~~L~ld~~~~~~~~~~l~~f~~~L~   77 (299)
T PF08643_consen    3 KEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESED-----RPDIRPLWLDDSDPSSIHASLSRFASLLS   77 (299)
T ss_pred             eeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhcc-----CCCCCCcccCCCCCcchHHHHHHHHHHhc
Confidence            468899996 799999999999999999999998876543333321     23477777788776666666555544332


Q ss_pred             --------------CeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEec-
Q 025275          108 --------------PLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVS-  169 (255)
Q Consensus       108 --------------~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vs-  169 (255)
                                    .+..||......   +|.+.++.+.|.+.++.|+..++..++.++|.++.+.   ..+.+||.+. 
T Consensus        78 ~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~---~~~~~iil~~P  154 (299)
T PF08643_consen   78 RPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRS---NQKSKIILFNP  154 (299)
T ss_pred             CCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCceEEEEeC
Confidence                          234444444322   3456788999999999999999999999999998632   2355666665 


Q ss_pred             CCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          170 SEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       170 S~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      |+.+..               ..+..+.-.....++++|++.|.+|+.+.+  |.|..+..|.++-.
T Consensus       155 si~ssl---------------~~PfhspE~~~~~al~~~~~~LrrEl~~~~--I~V~~i~LG~l~i~  204 (299)
T PF08643_consen  155 SISSSL---------------NPPFHSPESIVSSALSSFFTSLRRELRPHN--IDVTQIKLGNLDIG  204 (299)
T ss_pred             chhhcc---------------CCCccCHHHHHHHHHHHHHHHHHHHhhhcC--CceEEEEeeeeccc
Confidence            444333               344667788899999999999999999888  99999999988776

One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.26  E-value=2.4e-10  Score=98.96  Aligned_cols=182  Identities=20%  Similarity=0.236  Sum_probs=117.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccch---HHHHHHHHH-----hhCCCCceEEEEeCCCCH------HH
Q 025275           30 LTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAA---GKDVREAIV-----KEIPSAKVDAMELDVSSL------AS   94 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~---~~~~~~~~~-----~~~~~~~~~~~~~Dl~~~------~s   94 (255)
                      +++++|||||++|..++++|+.+- ++|++..|....   ...+.+.+.     +.....+++.+..|++.+      ..
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            479999999999999999999865 489999987652   222222222     111256899999999953      33


Q ss_pred             HHHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275           95 VRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus        95 i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      .+.+.+       .+|.+|||++..+-.     ..+.+....|+.|+-.+++.+.-         ++...+.++||++..
T Consensus        81 ~~~La~-------~vD~I~H~gA~Vn~v-----~pYs~L~~~NVlGT~evlrLa~~---------gk~Kp~~yVSsisv~  139 (382)
T COG3320          81 WQELAE-------NVDLIIHNAALVNHV-----FPYSELRGANVLGTAEVLRLAAT---------GKPKPLHYVSSISVG  139 (382)
T ss_pred             HHHHhh-------hcceEEecchhhccc-----CcHHHhcCcchHhHHHHHHHHhc---------CCCceeEEEeeeeec
Confidence            444444       489999999864322     23455678899999999988762         223359999998744


Q ss_pred             cccc-c--CccCCCCCc--ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          175 FAYS-E--GIRFDKIND--ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       175 ~~~~-~--~~~~~~~~~--~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .... .  ....+.+++  .........|+.||-+.+-+++    +...+|  +++..+.||+|-.+..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr----~A~~rG--Lpv~I~Rpg~I~gds~  202 (382)
T COG3320         140 ETEYYSNFTVDFDEISPTRNVGQGLAGGYGRSKWVAEKLVR----EAGDRG--LPVTIFRPGYITGDSR  202 (382)
T ss_pred             cccccCCCccccccccccccccCccCCCcchhHHHHHHHHH----HHhhcC--CCeEEEecCeeeccCc
Confidence            3211 1  111111111  1122334689999988666554    445557  5555599999987653

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.22  E-value=5.4e-10  Score=114.61  Aligned_cols=185  Identities=19%  Similarity=0.193  Sum_probs=116.7

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcC----CeEEEEEeccchHHHHHHHHHhh---CC------CCceEEEEeCCCCHHH-
Q 025275           29 GLTAIVTGASSGIGTETARVLALRG----VHVIMAVRNMAAGKDVREAIVKE---IP------SAKVDAMELDVSSLAS-   94 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G----~~Vi~~~r~~~~~~~~~~~~~~~---~~------~~~~~~~~~Dl~~~~s-   94 (255)
                      .++++||||+|.||.+++++|++++    .+|+.+.|+...... .+.+...   +.      ..++.++..|++++.- 
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAG-LERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHH-HHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence            5789999999999999999999987    689999887543222 2222111   00      1368899999986420 


Q ss_pred             -HHHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275           95 -VRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus        95 -i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                       -...++++.   ..+|++||||+.....  .   .+......|+.|+.++++.+...         +..+++++||...
T Consensus      1050 l~~~~~~~l~---~~~d~iiH~Aa~~~~~--~---~~~~~~~~nv~gt~~ll~~a~~~---------~~~~~v~vSS~~v 1112 (1389)
T TIGR03443      1050 LSDEKWSDLT---NEVDVIIHNGALVHWV--Y---PYSKLRDANVIGTINVLNLCAEG---------KAKQFSFVSSTSA 1112 (1389)
T ss_pred             cCHHHHHHHH---hcCCEEEECCcEecCc--c---CHHHHHHhHHHHHHHHHHHHHhC---------CCceEEEEeCeee
Confidence             011222222   2589999999864321  1   23344567999999999887532         2348999999865


Q ss_pred             cccccc-----------CccCCCCC--cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          174 RFAYSE-----------GIRFDKIN--DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       174 ~~~~~~-----------~~~~~~~~--~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      +.....           ....+...  ..........|+.||.+.+.+++.++    ..|  +.+..+.||.|..+.
T Consensus      1113 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~----~~g--~~~~i~Rpg~v~G~~ 1183 (1389)
T TIGR03443      1113 LDTEYYVNLSDELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAG----KRG--LRGCIVRPGYVTGDS 1183 (1389)
T ss_pred             cCcccccchhhhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHH----hCC--CCEEEECCCccccCC
Confidence            531100           00011000  01111233569999999888777643    235  788889999998763

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK08309 short chain dehydrogenase; Provisional

Probab=99.17  E-value=2.7e-10  Score=90.81  Aligned_cols=84  Identities=15%  Similarity=0.256  Sum_probs=70.4

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ++++||||+ |+|.+++++|+++|++|++++|+.+........+..   ..++.++++|++|++++..+++++.+.++++
T Consensus         1 m~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~---~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~i   76 (177)
T PRK08309          1 MHALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTT---PESITPLPLDYHDDDALKLAIKSTIEKNGPF   76 (177)
T ss_pred             CEEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhc---CCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            369999998 666779999999999999999987766555544432   3478899999999999999999998888999


Q ss_pred             eEEEEccC
Q 025275          110 NILINNAG  117 (255)
Q Consensus       110 d~lv~~ag  117 (255)
                      |++|+..-
T Consensus        77 d~lv~~vh   84 (177)
T PRK08309         77 DLAVAWIH   84 (177)
T ss_pred             eEEEEecc
Confidence            99997774

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=99.12  E-value=1.8e-10  Score=95.50  Aligned_cols=100  Identities=13%  Similarity=0.247  Sum_probs=75.5

Q ss_pred             cEEEEecC-CCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGA-SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~-s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      .+-.||.. +||||+++|++|+++|++|+++++.. .       +..   .   ....+|+++.+++..+++++.+.+++
T Consensus        15 ~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~-~-------l~~---~---~~~~~Dv~d~~s~~~l~~~v~~~~g~   80 (227)
T TIGR02114        15 SVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKR-A-------LKP---E---PHPNLSIREIETTKDLLITLKELVQE   80 (227)
T ss_pred             CceeecCCcccHHHHHHHHHHHHCCCEEEEEcChh-h-------ccc---c---cCCcceeecHHHHHHHHHHHHHHcCC
Confidence            44556665 68899999999999999999987631 1       110   0   12458999999999999999999999


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHH
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTH  146 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~  146 (255)
                      +|++|||||+..  +..+.+.++|.++   +..+.+++.+
T Consensus        81 iDiLVnnAgv~d~~~~~~~s~e~~~~~---~~~~~~~~~~  117 (227)
T TIGR02114        81 HDILIHSMAVSDYTPVYMTDLEQVQAS---DNLNEFLSKQ  117 (227)
T ss_pred             CCEEEECCEeccccchhhCCHHHHhhh---cchhhhhccc
Confidence            999999999753  4556777888766   4446666665

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>PLN00016 RNA-binding protein; Provisional

Probab=99.12  E-value=1.1e-09  Score=97.57  Aligned_cols=158  Identities=16%  Similarity=0.118  Sum_probs=95.4

Q ss_pred             CCCcEEEEe----cCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHH----HHHhhCCCCceEEEEeCCCCHHHHHHH
Q 025275           27 GTGLTAIVT----GASSGIGTETARVLALRGVHVIMAVRNMAAGKDVRE----AIVKEIPSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        27 ~~~k~vlIt----G~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      ...+++|||    ||+|.||.+++++|+++|++|++++|+.........    .+... ....+.++.+|++|   +..+
T Consensus        50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d---~~~~  125 (378)
T PLN00016         50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSEL-SSAGVKTVWGDPAD---VKSK  125 (378)
T ss_pred             cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHh-hhcCceEEEecHHH---HHhh
Confidence            445789999    999999999999999999999999998764322110    01111 01247888999876   3333


Q ss_pred             HHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275           99 ASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      +.     ...+|+|||+++.       .           ..++..++++    .++     .+-.++|++||...+ +..
T Consensus       126 ~~-----~~~~d~Vi~~~~~-------~-----------~~~~~~ll~a----a~~-----~gvkr~V~~SS~~vy-g~~  172 (378)
T PLN00016        126 VA-----GAGFDVVYDNNGK-------D-----------LDEVEPVADW----AKS-----PGLKQFLFCSSAGVY-KKS  172 (378)
T ss_pred             hc-----cCCccEEEeCCCC-------C-----------HHHHHHHHHH----HHH-----cCCCEEEEEccHhhc-CCC
Confidence            32     1268999999762       1           1122233333    333     223489999997543 222


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      +..   +..+..+..+   +. +|...+.+.+       ..+  +.+..+.|+.+..+.
T Consensus       173 ~~~---p~~E~~~~~p---~~-sK~~~E~~l~-------~~~--l~~~ilRp~~vyG~~  215 (378)
T PLN00016        173 DEP---PHVEGDAVKP---KA-GHLEVEAYLQ-------KLG--VNWTSFRPQYIYGPG  215 (378)
T ss_pred             CCC---CCCCCCcCCC---cc-hHHHHHHHHH-------HcC--CCeEEEeceeEECCC
Confidence            111   1122222222   22 6776665432       234  777789999998764

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=99.10  E-value=5.4e-10  Score=92.89  Aligned_cols=182  Identities=15%  Similarity=0.086  Sum_probs=124.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcC--CeEEEEEe-ccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRG--VHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+.++||||.|.||...+..++..-  ++.+.++- .--.-....++...   ..+..+++.|+.++..+..++.+    
T Consensus         6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n---~p~ykfv~~di~~~~~~~~~~~~----   78 (331)
T KOG0747|consen    6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRN---SPNYKFVEGDIADADLVLYLFET----   78 (331)
T ss_pred             cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhcc---CCCceEeeccccchHHHHhhhcc----
Confidence            3889999999999999999999874  34444432 11111222222221   34788999999999988888774    


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                       ..+|.|+|-|...+.  +.+.-+..+..+.|+.++..++..++-...        --++|.+|+-..+. ..++.-...
T Consensus        79 -~~id~vihfaa~t~v--d~s~~~~~~~~~nnil~t~~Lle~~~~sg~--------i~~fvhvSTdeVYG-ds~~~~~~~  146 (331)
T KOG0747|consen   79 -EEIDTVIHFAAQTHV--DRSFGDSFEFTKNNILSTHVLLEAVRVSGN--------IRRFVHVSTDEVYG-DSDEDAVVG  146 (331)
T ss_pred             -CchhhhhhhHhhhhh--hhhcCchHHHhcCCchhhhhHHHHHHhccC--------eeEEEEecccceec-Ccccccccc
Confidence             379999999986532  222334456688899999999988876653        23999999966443 222111111


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                        +.....+...|+++|+|.+++.+++...++     +.+..+.-+.|..|
T Consensus       147 --E~s~~nPtnpyAasKaAaE~~v~Sy~~sy~-----lpvv~~R~nnVYGP  190 (331)
T KOG0747|consen  147 --EASLLNPTNPYAASKAAAEMLVRSYGRSYG-----LPVVTTRMNNVYGP  190 (331)
T ss_pred             --ccccCCCCCchHHHHHHHHHHHHHHhhccC-----CcEEEEeccCccCC
Confidence              333444667899999999999999988876     56655666666665

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=98.99  E-value=1.3e-08  Score=87.11  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC-e
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP-L  109 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~-i  109 (255)
                      +++||||||.+|++++++|+++|++|.++.|+.++..           ...+..+.+|++|++++..+++.. +.+.+ +
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~-----------~~~~~~~~~d~~d~~~l~~a~~~~-~~~~g~~   68 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA-----------GPNEKHVKFDWLDEDTWDNPFSSD-DGMEPEI   68 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc-----------CCCCccccccCCCHHHHHHHHhcc-cCcCCce
Confidence            4899999999999999999999999999999987531           113556788999999999988753 33345 9


Q ss_pred             eEEEEccCC
Q 025275          110 NILINNAGI  118 (255)
Q Consensus       110 d~lv~~ag~  118 (255)
                      |.++++++.
T Consensus        69 d~v~~~~~~   77 (285)
T TIGR03649        69 SAVYLVAPP   77 (285)
T ss_pred             eEEEEeCCC
Confidence            999998863

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK12320 hypothetical protein; Provisional

Probab=98.98  E-value=6.3e-09  Score=98.39  Aligned_cols=103  Identities=18%  Similarity=0.187  Sum_probs=77.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++|||||+|.||++++++|.++|++|++++|.....         .  ...+.++.+|+++.. +..+++       ++|
T Consensus         2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~---------~--~~~ve~v~~Dl~d~~-l~~al~-------~~D   62 (699)
T PRK12320          2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA---------L--DPRVDYVCASLRNPV-LQELAG-------EAD   62 (699)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc---------c--cCCceEEEccCCCHH-HHHHhc-------CCC
Confidence            699999999999999999999999999999864320         1  235789999999973 444433       589


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ++||+|+....      +    ...+|+.++.++++++...          +.++|++||..
T Consensus        63 ~VIHLAa~~~~------~----~~~vNv~Gt~nLleAA~~~----------GvRiV~~SS~~  104 (699)
T PRK12320         63 AVIHLAPVDTS------A----PGGVGITGLAHVANAAARA----------GARLLFVSQAA  104 (699)
T ss_pred             EEEEcCccCcc------c----hhhHHHHHHHHHHHHHHHc----------CCeEEEEECCC
Confidence            99999985311      1    1247999999998887421          23899999864

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=98.89  E-value=3.5e-08  Score=81.93  Aligned_cols=151  Identities=19%  Similarity=0.139  Sum_probs=94.3

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeE
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNI  111 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~  111 (255)
                      |+|+||+|.+|+.+++.|++.+++|.++.|+..  ....++++..    .++.+.+|+.|++++.++++       ++|.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~--~~~~~~l~~~----g~~vv~~d~~~~~~l~~al~-------g~d~   67 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS--SDRAQQLQAL----GAEVVEADYDDPESLVAALK-------GVDA   67 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH--HHHHHHHHHT----TTEEEES-TT-HHHHHHHHT-------TCSE
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc--hhhhhhhhcc----cceEeecccCCHHHHHHHHc-------CCce
Confidence            689999999999999999999999999999973  2334455543    34677999999999999998       6899


Q ss_pred             EEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccC
Q 025275          112 LINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESA  191 (255)
Q Consensus       112 lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~  191 (255)
                      +|.+.+...      ..        -+....++++++.+.-.+         ++| .||........          ...
T Consensus        68 v~~~~~~~~------~~--------~~~~~~~li~Aa~~agVk---------~~v-~ss~~~~~~~~----------~~~  113 (233)
T PF05368_consen   68 VFSVTPPSH------PS--------ELEQQKNLIDAAKAAGVK---------HFV-PSSFGADYDES----------SGS  113 (233)
T ss_dssp             EEEESSCSC------CC--------HHHHHHHHHHHHHHHT-S---------EEE-ESEESSGTTTT----------TTS
T ss_pred             EEeecCcch------hh--------hhhhhhhHHHhhhccccc---------eEE-EEEeccccccc----------ccc
Confidence            998887533      11        122334456666655443         776 45544322100          001


Q ss_pred             CCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          192 YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       192 ~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      .+. ...-..|+.++...+.       .+  +..+.|.||+.......
T Consensus       114 ~p~-~~~~~~k~~ie~~l~~-------~~--i~~t~i~~g~f~e~~~~  151 (233)
T PF05368_consen  114 EPE-IPHFDQKAEIEEYLRE-------SG--IPYTIIRPGFFMENLLP  151 (233)
T ss_dssp             TTH-HHHHHHHHHHHHHHHH-------CT--SEBEEEEE-EEHHHHHT
T ss_pred             ccc-chhhhhhhhhhhhhhh-------cc--ccceeccccchhhhhhh
Confidence            111 2222356554433322       25  77778999987776554

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.84  E-value=1.4e-08  Score=90.74  Aligned_cols=78  Identities=23%  Similarity=0.273  Sum_probs=61.7

Q ss_pred             CCCCcEEEEecC----------------CCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCC
Q 025275           26 DGTGLTAIVTGA----------------SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV   89 (255)
Q Consensus        26 ~~~~k~vlItG~----------------s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl   89 (255)
                      +++||++|||||                +|.+|.++|++|+++|++|++++++.+ +.         .+.   ....+|+
T Consensus       185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~---------~~~---~~~~~dv  251 (399)
T PRK05579        185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP---------TPA---GVKRIDV  251 (399)
T ss_pred             ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc---------CCC---CcEEEcc
Confidence            478999999999                555999999999999999999988752 11         111   1346799


Q ss_pred             CCHHHHHHHHHHHhcCCCCeeEEEEccCCC
Q 025275           90 SSLASVRKFASEYNSQGRPLNILINNAGIM  119 (255)
Q Consensus        90 ~~~~si~~~~~~~~~~~g~id~lv~~ag~~  119 (255)
                      ++.+++.+.+.   +.++.+|++|||||+.
T Consensus       252 ~~~~~~~~~v~---~~~~~~DilI~~Aav~  278 (399)
T PRK05579        252 ESAQEMLDAVL---AALPQADIFIMAAAVA  278 (399)
T ss_pred             CCHHHHHHHHH---HhcCCCCEEEEccccc
Confidence            99888777766   3477899999999976

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=98.84  E-value=6.4e-08  Score=86.89  Aligned_cols=190  Identities=18%  Similarity=0.178  Sum_probs=119.0

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC---eEEEEEeccc--hHHHHH---------HHHHhhCCC--CceEEEEeCCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV---HVIMAVRNMA--AGKDVR---------EAIVKEIPS--AKVDAMELDVS   90 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~---~Vi~~~r~~~--~~~~~~---------~~~~~~~~~--~~~~~~~~Dl~   90 (255)
                      +++|+++||||||++|+.+...|++.-.   +++++-|...  ..++..         +.+.+..|.  .++..+..|++
T Consensus        10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~   89 (467)
T KOG1221|consen   10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS   89 (467)
T ss_pred             hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence            5799999999999999999999998652   5777777533  222222         222333332  57888899999


Q ss_pred             CHHH------HHHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCe
Q 025275           91 SLAS------VRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGR  164 (255)
Q Consensus        91 ~~~s------i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~  164 (255)
                      +++-      .+.+.+       .+|++||+|+....     .+..+..+.+|..|+.++++.+....+-        ..
T Consensus        90 ~~~LGis~~D~~~l~~-------eV~ivih~AAtvrF-----de~l~~al~iNt~Gt~~~l~lak~~~~l--------~~  149 (467)
T KOG1221|consen   90 EPDLGISESDLRTLAD-------EVNIVIHSAATVRF-----DEPLDVALGINTRGTRNVLQLAKEMVKL--------KA  149 (467)
T ss_pred             CcccCCChHHHHHHHh-------cCCEEEEeeeeecc-----chhhhhhhhhhhHhHHHHHHHHHHhhhh--------he
Confidence            7642      222222       68999999985332     3456677999999999999988766553        38


Q ss_pred             EEEecCCcccccccc---CccCCCCC---cc-----------------c--CC-CCccchHHhHHHHHHHHHHHHHHHhh
Q 025275          165 IVNVSSEAHRFAYSE---GIRFDKIN---DE-----------------S--AY-NSFGAYGQSKLANILHAKELAKHLKE  218 (255)
Q Consensus       165 ii~vsS~~~~~~~~~---~~~~~~~~---~~-----------------~--~~-~~~~~Y~~sKaa~~~l~~~la~~~~~  218 (255)
                      ++.+|+..+. ....   +.+++.-.   .+                 .  .. .....|.-+||-.+++...-+.    
T Consensus       150 ~vhVSTAy~n-~~~~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~----  224 (467)
T KOG1221|consen  150 LVHVSTAYSN-CNVGHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE----  224 (467)
T ss_pred             EEEeehhhee-cccccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc----
Confidence            9999987765 2111   11111000   00                 0  00 0123566666554444333222    


Q ss_pred             CCCcEEEEEeeCCceecCcccccCcc
Q 025275          219 DGVNITANSLHPGSIVTNLFRYNGIL  244 (255)
Q Consensus       219 ~~~~i~vn~v~PG~v~t~~~~~~~~~  244 (255)
                       +  +-+.-++|..|-....+....|
T Consensus       225 -~--lPivIiRPsiI~st~~EP~pGW  247 (467)
T KOG1221|consen  225 -N--LPLVIIRPSIITSTYKEPFPGW  247 (467)
T ss_pred             -C--CCeEEEcCCceeccccCCCCCc
Confidence             2  3444499999998887776665

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=98.83  E-value=2.4e-08  Score=85.84  Aligned_cols=84  Identities=20%  Similarity=0.233  Sum_probs=66.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCe-EEEEEecc---chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVH-VIMAVRNM---AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~-Vi~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      .++++|+++|+|| ||+|++++..|++.|++ |++++|+.   ++.+++.+++...  ...+.+..+|+++.+++...++
T Consensus       122 ~~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~--~~~~~~~~~d~~~~~~~~~~~~  198 (289)
T PRK12548        122 VDVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE--VPECIVNVYDLNDTEKLKAEIA  198 (289)
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc--CCCceeEEechhhhhHHHhhhc
Confidence            3578899999999 69999999999999996 99999997   5677777777544  2345566789988777766555


Q ss_pred             HHhcCCCCeeEEEEccCC
Q 025275          101 EYNSQGRPLNILINNAGI  118 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~  118 (255)
                             ..|+||||...
T Consensus       199 -------~~DilINaTp~  209 (289)
T PRK12548        199 -------SSDILVNATLV  209 (289)
T ss_pred             -------cCCEEEEeCCC
Confidence                   35999999854

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=98.83  E-value=4.3e-08  Score=81.60  Aligned_cols=166  Identities=13%  Similarity=0.110  Sum_probs=95.6

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeE
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNI  111 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~  111 (255)
                      ++||||||.||++++.+|.+.|.+|+++.|+..+.....            ...   +...+.+.....      ..+|+
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~------------~~~---v~~~~~~~~~~~------~~~Da   59 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNL------------HPN---VTLWEGLADALT------LGIDA   59 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhc------------Ccc---ccccchhhhccc------CCCCE
Confidence            589999999999999999999999999999987532211            111   111111222211      16999


Q ss_pred             EEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccC
Q 025275          112 LINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESA  191 (255)
Q Consensus       112 lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~  191 (255)
                      |||.||.+=.-.-.+.+.-++.    +.+-+..++.+.+.+.+.    .++.++..-+|..|+++......+.   +..+
T Consensus        60 vINLAG~~I~~rrWt~~~K~~i----~~SRi~~T~~L~e~I~~~----~~~P~~~isaSAvGyYG~~~~~~~t---E~~~  128 (297)
T COG1090          60 VINLAGEPIAERRWTEKQKEEI----RQSRINTTEKLVELIAAS----ETKPKVLISASAVGYYGHSGDRVVT---EESP  128 (297)
T ss_pred             EEECCCCccccccCCHHHHHHH----HHHHhHHHHHHHHHHHhc----cCCCcEEEecceEEEecCCCceeee---cCCC
Confidence            9999995311001233333333    335566667777777642    2344666667777887655433222   2211


Q ss_pred             CCCccchHHhHHHHHHHHHHHHHHHhh-CCCcEEEEEeeCCceecCc
Q 025275          192 YNSFGAYGQSKLANILHAKELAKHLKE-DGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       192 ~~~~~~Y~~sKaa~~~l~~~la~~~~~-~~~~i~vn~v~PG~v~t~~  237 (255)
                      . +       .-.+..+++.+-.+..+ +..++|+..+.-|.|..+-
T Consensus       129 ~-g-------~~Fla~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~  167 (297)
T COG1090         129 P-G-------DDFLAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPD  167 (297)
T ss_pred             C-C-------CChHHHHHHHHHHHHhhhhhcCceEEEEEEEEEecCC
Confidence            1 1       11122455554443211 2223999999999988753

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=6.9e-08  Score=78.08  Aligned_cols=160  Identities=14%  Similarity=0.138  Sum_probs=110.2

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC---eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV---HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~---~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++++|||++|-+|++|.+.+.++|+   +.++.+                       .-.+|+++....+.+|.+.    
T Consensus         2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~-----------------------skd~DLt~~a~t~~lF~~e----   54 (315)
T KOG1431|consen    2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIG-----------------------SKDADLTNLADTRALFESE----   54 (315)
T ss_pred             ceEEEecCCchHHHHHHHHHHhcCCCCcceEEec-----------------------cccccccchHHHHHHHhcc----
Confidence            6899999999999999999999887   233322                       1236999999999999976    


Q ss_pred             CCeeEEEEccCCCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC-
Q 025275          107 RPLNILINNAGIMAS-PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD-  184 (255)
Q Consensus       107 g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~-  184 (255)
                       .+.+|||.|+..+. +.+..  --.+.++.|+.-.-++++.+.++..+         +++++.|..   .+|+..+++ 
T Consensus        55 -kPthVIhlAAmVGGlf~N~~--ynldF~r~Nl~indNVlhsa~e~gv~---------K~vsclStC---IfPdkt~yPI  119 (315)
T KOG1431|consen   55 -KPTHVIHLAAMVGGLFHNNT--YNLDFIRKNLQINDNVLHSAHEHGVK---------KVVSCLSTC---IFPDKTSYPI  119 (315)
T ss_pred             -CCceeeehHhhhcchhhcCC--CchHHHhhcceechhHHHHHHHhchh---------hhhhhccee---ecCCCCCCCC
Confidence             68999999976543 22211  11335677777777888888888776         777776643   445544333 


Q ss_pred             ---CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          185 ---KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       185 ---~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                         -++..-+-+....|+.+|..+.-..+.++.++...     ..++.|-.+..|
T Consensus       120 dEtmvh~gpphpsN~gYsyAKr~idv~n~aY~~qhg~~-----~tsviPtNvfGp  169 (315)
T KOG1431|consen  120 DETMVHNGPPHPSNFGYSYAKRMIDVQNQAYRQQHGRD-----YTSVIPTNVFGP  169 (315)
T ss_pred             CHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHhCCc-----eeeeccccccCC
Confidence               23333344566789999977777778888887653     334556555554

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=98.75  E-value=1.3e-07  Score=78.99  Aligned_cols=126  Identities=21%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      -..++.|-++-|.||||++|+.++.+|++.|.+||+=.|-.+.--   ..++-...-+++.++..|+.|++||.++++. 
T Consensus        55 GRsS~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~---r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~-  130 (391)
T KOG2865|consen   55 GRSSVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDP---RHLKVMGDLGQVLFMKFDLRDEDSIRAVVKH-  130 (391)
T ss_pred             CcccccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccch---hheeecccccceeeeccCCCCHHHHHHHHHh-
Confidence            344578899999999999999999999999999999999766422   2222221135899999999999999999994 


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                            -++|||..|--......+.      .++|+.++-.+++.|.+....         ++|.+|+..+
T Consensus       131 ------sNVVINLIGrd~eTknf~f------~Dvn~~~aerlAricke~GVe---------rfIhvS~Lga  180 (391)
T KOG2865|consen  131 ------SNVVINLIGRDYETKNFSF------EDVNVHIAERLARICKEAGVE---------RFIHVSCLGA  180 (391)
T ss_pred             ------CcEEEEeeccccccCCccc------ccccchHHHHHHHHHHhhChh---------heeehhhccc
Confidence                  5999999985433333332      456888888899888877765         8999988663

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.75  E-value=9.3e-08  Score=77.36  Aligned_cols=85  Identities=19%  Similarity=0.291  Sum_probs=68.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ..++++++++|+||+|++|+.+++.|++.|++|++++|+.+++++..+.+.+..   ......+|..+.+++...++   
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~---   96 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARF---GEGVGAVETSDDAARAAAIK---   96 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhc---CCcEEEeeCCCHHHHHHHHh---
Confidence            457889999999999999999999999999999999999888888777775432   23455678888888877775   


Q ss_pred             cCCCCeeEEEEccCC
Q 025275          104 SQGRPLNILINNAGI  118 (255)
Q Consensus       104 ~~~g~id~lv~~ag~  118 (255)
                          ..|++|++...
T Consensus        97 ----~~diVi~at~~  107 (194)
T cd01078          97 ----GADVVFAAGAA  107 (194)
T ss_pred             ----cCCEEEECCCC
Confidence                46888887653

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.70  E-value=1.3e-07  Score=86.22  Aligned_cols=123  Identities=18%  Similarity=0.156  Sum_probs=83.1

Q ss_pred             EecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeEEE
Q 025275           34 VTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILI  113 (255)
Q Consensus        34 ItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~lv  113 (255)
                      |+||+||+|.++++.|...|++|+.+.+...+.                                   ......+++.++
T Consensus        43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~-----------------------------------~~~~~~~~~~~~   87 (450)
T PRK08261         43 LVGGAGRLAEALAALLAGLGYDVVANNDGGLTW-----------------------------------AAGWGDRFGALV   87 (450)
T ss_pred             EEccCchhHHHHHHHHhhCCCeeeecCcccccc-----------------------------------ccCcCCcccEEE
Confidence            778889999999999999999998876654310                                   000011233333


Q ss_pred             EccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCC
Q 025275          114 NNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYN  193 (255)
Q Consensus       114 ~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~  193 (255)
                      .-+...     .+.++        +.+.+..++..++.+.+       .|+||+++|..+..                  
T Consensus        88 ~d~~~~-----~~~~~--------l~~~~~~~~~~l~~l~~-------~griv~i~s~~~~~------------------  129 (450)
T PRK08261         88 FDATGI-----TDPAD--------LKALYEFFHPVLRSLAP-------CGRVVVLGRPPEAA------------------  129 (450)
T ss_pred             EECCCC-----CCHHH--------HHHHHHHHHHHHHhccC-------CCEEEEEccccccC------------------
Confidence            222110     11111        22344566666666643       67999999976432                  


Q ss_pred             CccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCc
Q 025275          194 SFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGS  232 (255)
Q Consensus       194 ~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~  232 (255)
                      ....|+.+|+++.+++|+++.|+ .++  +++|+|.|+.
T Consensus       130 ~~~~~~~akaal~gl~rsla~E~-~~g--i~v~~i~~~~  165 (450)
T PRK08261        130 ADPAAAAAQRALEGFTRSLGKEL-RRG--ATAQLVYVAP  165 (450)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHh-hcC--CEEEEEecCC
Confidence            33469999999999999999999 666  9999999986

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=98.61  E-value=1.5e-07  Score=90.84  Aligned_cols=161  Identities=16%  Similarity=0.135  Sum_probs=128.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCe-EEEEEeccch---HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVH-VIMAVRNMAA---GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~-Vi~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ..|.++|+||-||.|+++|+.|.++|++ +++++|+.=+   ....++.|+..  +.++.+-..|++..+.-..++++. 
T Consensus      1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~--GVqV~vsT~nitt~~ga~~Li~~s- 1843 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRR--GVQVQVSTSNITTAEGARGLIEES- 1843 (2376)
T ss_pred             ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhc--CeEEEEecccchhhhhHHHHHHHh-
Confidence            4689999999999999999999999995 8888887432   34556677766  777888778888877777888765 


Q ss_pred             cCCCCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      ++.+.+-.++|.|.+..+  +++.+++.|.+.-+..+.|+.++-+.-.+....       -..+|..||+.+-.      
T Consensus      1844 ~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~-------LdyFv~FSSvscGR------ 1910 (2376)
T KOG1202|consen 1844 NKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPE-------LDYFVVFSSVSCGR------ 1910 (2376)
T ss_pred             hhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcc-------cceEEEEEeecccC------
Confidence            446778999999988854  678999999999999999999988877766643       23777788877544      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHH
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELA  213 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la  213 (255)
                               +..++..|+-+.++++-+++.-.
T Consensus      1911 ---------GN~GQtNYG~aNS~MERiceqRr 1933 (2376)
T KOG1202|consen 1911 ---------GNAGQTNYGLANSAMERICEQRR 1933 (2376)
T ss_pred             ---------CCCcccccchhhHHHHHHHHHhh
Confidence                     55588999999999888877643

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=98.57  E-value=2.6e-07  Score=82.25  Aligned_cols=79  Identities=23%  Similarity=0.345  Sum_probs=61.5

Q ss_pred             CCCCcEEEEecC---------------CCc-hHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCC
Q 025275           26 DGTGLTAIVTGA---------------SSG-IGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV   89 (255)
Q Consensus        26 ~~~~k~vlItG~---------------s~g-iG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl   89 (255)
                      +++||++|||||               |+| +|.++|++|+.+|++|+++++.....          .+.   ....+|+
T Consensus       182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~----------~~~---~~~~~~v  248 (390)
T TIGR00521       182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL----------TPP---GVKSIKV  248 (390)
T ss_pred             ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC----------CCC---CcEEEEe
Confidence            478999999999               566 99999999999999999988665321          111   2256799


Q ss_pred             CCHHHH-HHHHHHHhcCCCCeeEEEEccCCCC
Q 025275           90 SSLASV-RKFASEYNSQGRPLNILINNAGIMA  120 (255)
Q Consensus        90 ~~~~si-~~~~~~~~~~~g~id~lv~~ag~~~  120 (255)
                      ++.+++ +.++++.   ++.+|++|+|||+..
T Consensus       249 ~~~~~~~~~~~~~~---~~~~D~~i~~Aavsd  277 (390)
T TIGR00521       249 STAEEMLEAALNEL---AKDFDIFISAAAVAD  277 (390)
T ss_pred             ccHHHHHHHHHHhh---cccCCEEEEcccccc
Confidence            998888 6566553   467999999999863

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.48  E-value=3e-06  Score=71.60  Aligned_cols=132  Identities=20%  Similarity=0.101  Sum_probs=90.5

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +.+|||||||.+|.+++++|.++|.+|.+..|+.+......         ..+.+...|+.+..++...++       +.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~---------~~v~~~~~d~~~~~~l~~a~~-------G~   64 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA---------GGVEVVLGDLRDPKSLVAGAK-------GV   64 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc---------CCcEEEEeccCCHhHHHHHhc-------cc
Confidence            36899999999999999999999999999999988755443         368899999999999998888       57


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |.+++..+... ... .      .......+.....+.+.   .       ....++.+|...+..              
T Consensus        65 ~~~~~i~~~~~-~~~-~------~~~~~~~~~~~~a~~a~---~-------~~~~~~~~s~~~~~~--------------  112 (275)
T COG0702          65 DGVLLISGLLD-GSD-A------FRAVQVTAVVRAAEAAG---A-------GVKHGVSLSVLGADA--------------  112 (275)
T ss_pred             cEEEEEecccc-ccc-c------hhHHHHHHHHHHHHHhc---C-------CceEEEEeccCCCCC--------------
Confidence            88888887543 211 1      12222333344443332   0       123667666655321              


Q ss_pred             cCCCCccchHHhHHHHHHHHHHH
Q 025275          190 SAYNSFGAYGQSKLANILHAKEL  212 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~l  212 (255)
                         .....|..+|...+...++.
T Consensus       113 ---~~~~~~~~~~~~~e~~l~~s  132 (275)
T COG0702         113 ---ASPSALARAKAAVEAALRSS  132 (275)
T ss_pred             ---CCccHHHHHHHHHHHHHHhc
Confidence               13467888887766555444

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.47  E-value=7.3e-07  Score=78.77  Aligned_cols=77  Identities=27%  Similarity=0.457  Sum_probs=66.4

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +.+||.|+ |+||+.+|..|++.| .+|.+++|+.++.++..+..     ..++.+.++|+.|.+++.+++++       
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~li~~-------   68 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVALIKD-------   68 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHHHhc-------
Confidence            56899999 999999999999999 79999999988876665543     33799999999999999999984       


Q ss_pred             eeEEEEccCCC
Q 025275          109 LNILINNAGIM  119 (255)
Q Consensus       109 id~lv~~ag~~  119 (255)
                      .|+|||++..+
T Consensus        69 ~d~VIn~~p~~   79 (389)
T COG1748          69 FDLVINAAPPF   79 (389)
T ss_pred             CCEEEEeCCch
Confidence            49999999754

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.42  E-value=1.3e-06  Score=72.52  Aligned_cols=96  Identities=15%  Similarity=0.261  Sum_probs=61.1

Q ss_pred             cEEEEecCCCc-hHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSG-IGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~g-iG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      .+-.||+.++| +|.++|++|+++|++|++++|.....        . .+...+.++.++  ..+   ...+.+.+.++.
T Consensus        16 ~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~--------~-~~~~~v~~i~v~--s~~---~m~~~l~~~~~~   81 (229)
T PRK06732         16 SVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVK--------P-EPHPNLSIIEIE--NVD---DLLETLEPLVKD   81 (229)
T ss_pred             CceeecCccchHHHHHHHHHHHhCCCEEEEEECccccc--------C-CCCCCeEEEEEe--cHH---HHHHHHHHHhcC
Confidence            46678876665 99999999999999999998764210        0 011245566543  222   223333333456


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHH
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHL  139 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~  139 (255)
                      +|++|||||+..  +....+.+++.+++++|-.
T Consensus        82 ~DivIh~AAvsd~~~~~~~~~~~~~~~~~v~~~  114 (229)
T PRK06732         82 HDVLIHSMAVSDYTPVYMTDLEEVSASDNLNEF  114 (229)
T ss_pred             CCEEEeCCccCCceehhhhhhhhhhhhhhhhhh
Confidence            899999999864  2334566777777666443

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=98.39  E-value=4.3e-05  Score=70.21  Aligned_cols=200  Identities=18%  Similarity=0.112  Sum_probs=124.9

Q ss_pred             ccCCCCCCcEEEEecCC-CchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhC--CCCceEEEEeCCCCHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGAS-SGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEI--PSAKVDAMELDVSSLASVRK   97 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s-~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~si~~   97 (255)
                      .+.....++++|||||+ +.||.+++.+|++.|++||++-.+. +.-.+..+.+-..+  ++..+..+.++..++..|+.
T Consensus       389 p~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdA  468 (866)
T COG4982         389 PNGGTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDA  468 (866)
T ss_pred             CCCCCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHH
Confidence            45667789999999998 7799999999999999999886543 34455555554433  36678889999999999999


Q ss_pred             HHHHHhcCC----C----------CeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 025275           98 FASEYNSQG----R----------PLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSR  161 (255)
Q Consensus        98 ~~~~~~~~~----g----------~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~  161 (255)
                      +++-|.+.-    |          .+|.+|--|.+...  ..+..+. -+-.+++-+.+..+++-.+.+....+.-  ..
T Consensus       469 lIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsr-aE~~~rilLw~V~Rliggl~~~~s~r~v--~~  545 (866)
T COG4982         469 LIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSR-AEFAMRILLWNVLRLIGGLKKQGSSRGV--DT  545 (866)
T ss_pred             HHHHhccccccccCCcceecccccCcceeeecccCCccCccccCCch-HHHHHHHHHHHHHHHHHHhhhhccccCc--cc
Confidence            999885421    1          25677766654322  1122221 1223455555555655544444332111  11


Q ss_pred             CCeEEEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHH--HhhCCCcEEEEEeeCCceec-Ccc
Q 025275          162 EGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKH--LKEDGVNITANSLHPGSIVT-NLF  238 (255)
Q Consensus       162 ~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~--~~~~~~~i~vn~v~PG~v~t-~~~  238 (255)
                      +-.||.-.|..                ...+.+...|+-+|+++..++--+..|  ++.+   +.+-.-.-|+++. .++
T Consensus       546 R~hVVLPgSPN----------------rG~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~---vsl~~A~IGWtrGTGLM  606 (866)
T COG4982         546 RLHVVLPGSPN----------------RGMFGGDGAYGESKLALDAVVNRWHSESSWAAR---VSLAHALIGWTRGTGLM  606 (866)
T ss_pred             ceEEEecCCCC----------------CCccCCCcchhhHHHHHHHHHHHhhccchhhHH---HHHhhhheeeecccccc
Confidence            23566665533                113346678999999999987665544  3333   4544455677664 355


Q ss_pred             cccCc
Q 025275          239 RYNGI  243 (255)
Q Consensus       239 ~~~~~  243 (255)
                      .++++
T Consensus       607 g~Ndi  611 (866)
T COG4982         607 GHNDI  611 (866)
T ss_pred             CCcch
Confidence            45444

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.39  E-value=1.5e-05  Score=70.74  Aligned_cols=128  Identities=22%  Similarity=0.231  Sum_probs=83.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHH-HHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASV-RKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si-~~~~~~~~~~  105 (255)
                      .+-.+|+|+||+|.+|+-+++.|.++|+.|..+.|+.+...+... +...  +....-+..|...+.++ ..++..+.  
T Consensus        77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~-~~~~--d~~~~~v~~~~~~~~d~~~~~~~~~~--  151 (411)
T KOG1203|consen   77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG-VFFV--DLGLQNVEADVVTAIDILKKLVEAVP--  151 (411)
T ss_pred             CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc-cccc--ccccceeeeccccccchhhhhhhhcc--
Confidence            456799999999999999999999999999999999887666554 1111  22344455555554333 33333221  


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                       -...+++-++|..+...     +..--.++...|+.+++.+|.....+         ++|.+||+.+.
T Consensus       152 -~~~~~v~~~~ggrp~~e-----d~~~p~~VD~~g~knlvdA~~~aGvk---------~~vlv~si~~~  205 (411)
T KOG1203|consen  152 -KGVVIVIKGAGGRPEEE-----DIVTPEKVDYEGTKNLVDACKKAGVK---------RVVLVGSIGGT  205 (411)
T ss_pred             -ccceeEEecccCCCCcc-----cCCCcceecHHHHHHHHHHHHHhCCc---------eEEEEEeecCc
Confidence             12456677776543322     11112445677888888888655555         99999887754

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=98.36  E-value=2.9e-06  Score=69.69  Aligned_cols=158  Identities=15%  Similarity=0.137  Sum_probs=105.5

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH-HHHHHhh---CCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV-REAIVKE---IPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~-~~~~~~~---~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .|++||||-+|-=|..+|..|+.+|++|..+-|...+.... ++.+-..   +.+.....-..|++|...+.++++.+  
T Consensus        28 rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i--  105 (376)
T KOG1372|consen   28 RKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI--  105 (376)
T ss_pred             ceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc--
Confidence            46999999999999999999999999999998876655433 2323111   12455666678999999999999988  


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                         .++-+.|.|+..+.-.+.  +-.+-.-++...|+++++.+....-..      .+-++---|+.. .+   ......
T Consensus       106 ---kPtEiYnLaAQSHVkvSF--dlpeYTAeVdavGtLRlLdAi~~c~l~------~~VrfYQAstSE-ly---Gkv~e~  170 (376)
T KOG1372|consen  106 ---KPTEVYNLAAQSHVKVSF--DLPEYTAEVDAVGTLRLLDAIRACRLT------EKVRFYQASTSE-LY---GKVQEI  170 (376)
T ss_pred             ---CchhhhhhhhhcceEEEe--ecccceeeccchhhhhHHHHHHhcCcc------cceeEEecccHh-hc---ccccCC
Confidence               688899998865432222  222223456677888888766543322      223443333322 22   112233


Q ss_pred             CCCcccCCCCccchHHhHH
Q 025275          185 KINDESAYNSFGAYGQSKL  203 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKa  203 (255)
                      +..+.+|+.+.++|+++|-
T Consensus       171 PQsE~TPFyPRSPYa~aKm  189 (376)
T KOG1372|consen  171 PQSETTPFYPRSPYAAAKM  189 (376)
T ss_pred             CcccCCCCCCCChhHHhhh
Confidence            5567788989999999993

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.34  E-value=1.8e-06  Score=77.29  Aligned_cols=76  Identities=32%  Similarity=0.482  Sum_probs=60.4

Q ss_pred             EEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           32 AIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |+|.|| |.+|+.+++.|++.+-  +|++.+|+.++++...+++    ...++.+.++|+.|.+++.+++++       .
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~-------~   68 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAELLRG-------C   68 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHHHTT-------S
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHHHhc-------C
Confidence            689999 9999999999999884  7999999999887777665    256899999999999998888883       5


Q ss_pred             eEEEEccCCC
Q 025275          110 NILINNAGIM  119 (255)
Q Consensus       110 d~lv~~ag~~  119 (255)
                      |+||||+|..
T Consensus        69 dvVin~~gp~   78 (386)
T PF03435_consen   69 DVVINCAGPF   78 (386)
T ss_dssp             SEEEE-SSGG
T ss_pred             CEEEECCccc
Confidence            9999999864

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=98.33  E-value=2.4e-06  Score=73.48  Aligned_cols=83  Identities=19%  Similarity=0.227  Sum_probs=71.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHH----cCCeEEEEEeccchHHHHHHHHHhhCCC--CceEEEEeCCCCHHHHHHHHHHHh
Q 025275           30 LTAIVTGASSGIGTETARVLAL----RGVHVIMAVRNMAAGKDVREAIVKEIPS--AKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~----~G~~Vi~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      --++|.||||.-|.-+++++.+    .|..+.+.+|++++++++++...+..+.  .+..++-||.+|+++++++.++  
T Consensus         6 yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~--   83 (423)
T KOG2733|consen    6 YDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQ--   83 (423)
T ss_pred             eeEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhh--
Confidence            3589999999999999999999    7788999999999999999998776432  2334888999999999999996  


Q ss_pred             cCCCCeeEEEEccCCC
Q 025275          104 SQGRPLNILINNAGIM  119 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~  119 (255)
                           ..+++||+|..
T Consensus        84 -----~~vivN~vGPy   94 (423)
T KOG2733|consen   84 -----ARVIVNCVGPY   94 (423)
T ss_pred             -----hEEEEeccccc
Confidence                 58899999976

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=98.30  E-value=1.3e-06  Score=71.29  Aligned_cols=180  Identities=18%  Similarity=0.210  Sum_probs=113.1

Q ss_pred             ccccCCCCCCcEEEEecCCCchHHHHHHHHHH-cCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHH
Q 025275           20 EVTQGIDGTGLTAIVTGASSGIGTETARVLAL-RGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRK   97 (255)
Q Consensus        20 ~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~-~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~   97 (255)
                      .+..+.+.+-.++||||+-|-+|..+|+-|.. .|. .||+.+-..+. +.+.+         .--++-.|+-|..++++
T Consensus        35 FH~~s~~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp-~~V~~---------~GPyIy~DILD~K~L~e  104 (366)
T KOG2774|consen   35 FHTISQTQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPP-ANVTD---------VGPYIYLDILDQKSLEE  104 (366)
T ss_pred             cccccccCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCc-hhhcc---------cCCchhhhhhccccHHH
Confidence            34444556677999999999999999998876 465 47776655432 22211         11366679999888877


Q ss_pred             HHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275           98 FASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus        98 ~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      ++-.     .+||-+||-.+.....   .+.......++|+.|..++++.+..+..           -||+-|..|-+++
T Consensus       105 IVVn-----~RIdWL~HfSALLSAv---GE~NVpLA~~VNI~GvHNil~vAa~~kL-----------~iFVPSTIGAFGP  165 (366)
T KOG2774|consen  105 IVVN-----KRIDWLVHFSALLSAV---GETNVPLALQVNIRGVHNILQVAAKHKL-----------KVFVPSTIGAFGP  165 (366)
T ss_pred             hhcc-----cccceeeeHHHHHHHh---cccCCceeeeecchhhhHHHHHHHHcCe-----------eEeecccccccCC
Confidence            7653     3799999987654221   2223334588999999999988875543           3555554444432


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEe-eCCceec
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSL-HPGSIVT  235 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v-~PG~v~t  235 (255)
                      ..  |-.+-.+.+-..+...|+.||.-.+-+-+.+...|+     +.+-++ .||.+..
T Consensus       166 tS--PRNPTPdltIQRPRTIYGVSKVHAEL~GEy~~hrFg-----~dfr~~rfPg~is~  217 (366)
T KOG2774|consen  166 TS--PRNPTPDLTIQRPRTIYGVSKVHAELLGEYFNHRFG-----VDFRSMRFPGIISA  217 (366)
T ss_pred             CC--CCCCCCCeeeecCceeechhHHHHHHHHHHHHhhcC-----ccceecccCccccc
Confidence            21  111222233345667899999877776666666554     444445 3776654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.28  E-value=5.4e-06  Score=63.11  Aligned_cols=79  Identities=22%  Similarity=0.307  Sum_probs=60.6

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCe-EEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVH-VIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++++++|.|+ ||.|++++..|++.|++ |.++.|+.++++++.+++    ++..+.++..  .+   +...+.    
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~~--~~---~~~~~~----   74 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEF----GGVNIEAIPL--ED---LEEALQ----   74 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH----TGCSEEEEEG--GG---HCHHHH----
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc----CccccceeeH--HH---HHHHHh----
Confidence            688999999998 89999999999999986 999999999988888887    2334555543  33   333444    


Q ss_pred             CCCCeeEEEEccCCCCC
Q 025275          105 QGRPLNILINNAGIMAS  121 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~  121 (255)
                         ..|++|++.+...+
T Consensus        75 ---~~DivI~aT~~~~~   88 (135)
T PF01488_consen   75 ---EADIVINATPSGMP   88 (135)
T ss_dssp             ---TESEEEE-SSTTST
T ss_pred             ---hCCeEEEecCCCCc
Confidence               58999999986543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK09620 hypothetical protein; Provisional

Probab=98.28  E-value=1.2e-06  Score=72.64  Aligned_cols=82  Identities=18%  Similarity=0.206  Sum_probs=51.5

Q ss_pred             CCCcEEEEecCC----------------CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCC
Q 025275           27 GTGLTAIVTGAS----------------SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS   90 (255)
Q Consensus        27 ~~~k~vlItG~s----------------~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   90 (255)
                      +.||++|||+|.                |.+|.++|++|+++|++|+++++.......   .+   .....+..+..|..
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~---~~---~~~~~~~~V~s~~d   74 (229)
T PRK09620          1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN---DI---NNQLELHPFEGIID   74 (229)
T ss_pred             CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc---cc---CCceeEEEEecHHH
Confidence            478999999987                999999999999999999988754221100   00   00122333333222


Q ss_pred             CHHHHHHHHHHHhcCCCCeeEEEEccCCC
Q 025275           91 SLASVRKFASEYNSQGRPLNILINNAGIM  119 (255)
Q Consensus        91 ~~~si~~~~~~~~~~~g~id~lv~~ag~~  119 (255)
                      ..+.+..++++     ..+|++||+|+..
T Consensus        75 ~~~~l~~~~~~-----~~~D~VIH~AAvs   98 (229)
T PRK09620         75 LQDKMKSIITH-----EKVDAVIMAAAGS   98 (229)
T ss_pred             HHHHHHHHhcc-----cCCCEEEECcccc
Confidence            22233333321     2589999999975

>PLN00106 malate dehydrogenase

Probab=98.24  E-value=1.3e-05  Score=69.75  Aligned_cols=158  Identities=13%  Similarity=0.096  Sum_probs=95.5

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .++++|||++|.||..++..|+.++.  ++++.|.+... .+.. .+...  ....  ...++++.++....++      
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a~-Dl~~~--~~~~--~i~~~~~~~d~~~~l~------   85 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVAA-DVSHI--NTPA--QVRGFLGDDQLGDALK------   85 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeEc-hhhhC--CcCc--eEEEEeCCCCHHHHcC------
Confidence            46899999999999999999997774  79999987721 1111 22211  1111  2224333333444444      


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc----ccccccCcc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH----RFAYSEGIR  182 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~----~~~~~~~~~  182 (255)
                       ..|++|+.||....+    ..++.+.+..|......+.+.+.++-.        .+.|+.+|...-    +....    
T Consensus        86 -~aDiVVitAG~~~~~----g~~R~dll~~N~~i~~~i~~~i~~~~p--------~aivivvSNPvD~~~~i~t~~----  148 (323)
T PLN00106         86 -GADLVIIPAGVPRKP----GMTRDDLFNINAGIVKTLCEAVAKHCP--------NALVNIISNPVNSTVPIAAEV----  148 (323)
T ss_pred             -CCCEEEEeCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHCC--------CeEEEEeCCCccccHHHHHHH----
Confidence             689999999986442    234566788888876666666655543        345555555442    22110    


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhh
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKE  218 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~  218 (255)
                         +....++++...|+.++.-..-|-..++.++.-
T Consensus       149 ---~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~lgv  181 (323)
T PLN00106        149 ---LKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGL  181 (323)
T ss_pred             ---HHHcCCCCcceEEEEecchHHHHHHHHHHHhCC
Confidence               112235556678888875555666677777653

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.20  E-value=5.9e-06  Score=75.36  Aligned_cols=77  Identities=17%  Similarity=0.202  Sum_probs=58.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++|+++|+|+++ +|.++|+.|+++|++|.+.+++. +.+++..+++.+.    .+.++..|..+.            
T Consensus         2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~------------   64 (450)
T PRK14106          2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL----GIELVLGEYPEE------------   64 (450)
T ss_pred             CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCcchh------------
Confidence            57899999999888 99999999999999999999975 3344444554332    356777787761            


Q ss_pred             CCCCeeEEEEccCCC
Q 025275          105 QGRPLNILINNAGIM  119 (255)
Q Consensus       105 ~~g~id~lv~~ag~~  119 (255)
                      ..+.+|+||+++|..
T Consensus        65 ~~~~~d~vv~~~g~~   79 (450)
T PRK14106         65 FLEGVDLVVVSPGVP   79 (450)
T ss_pred             HhhcCCEEEECCCCC
Confidence            124689999999964

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=98.12  E-value=0.00022  Score=56.28  Aligned_cols=160  Identities=17%  Similarity=0.151  Sum_probs=99.4

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++.|.||||-+|..|+++..++|.+|..+.|+..++...          ..+.+++.|+.|.+++...+.       +.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~~~~a~~l~-------g~   63 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDLTSLASDLA-------GH   63 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc----------ccceeecccccChhhhHhhhc-------CC
Confidence            3578999999999999999999999999999998775332          246789999999998876666       68


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+||..-|...+    +.+  ....+    .    .+.+...++.     ....|++.++...+...-+...    + -+
T Consensus        64 DaVIsA~~~~~~----~~~--~~~~k----~----~~~li~~l~~-----agv~RllVVGGAGSL~id~g~r----L-vD  119 (211)
T COG2910          64 DAVISAFGAGAS----DND--ELHSK----S----IEALIEALKG-----AGVPRLLVVGGAGSLEIDEGTR----L-VD  119 (211)
T ss_pred             ceEEEeccCCCC----Chh--HHHHH----H----HHHHHHHHhh-----cCCeeEEEEcCccceEEcCCce----e-ec
Confidence            999988876422    111  11111    1    3334444443     2345899998877766433311    1 11


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      +|.-+-.-|..+++.-+ +.+.|..+   ..  +.-+-|+|..+..|
T Consensus       120 ~p~fP~ey~~~A~~~ae-~L~~Lr~~---~~--l~WTfvSPaa~f~P  160 (211)
T COG2910         120 TPDFPAEYKPEALAQAE-FLDSLRAE---KS--LDWTFVSPAAFFEP  160 (211)
T ss_pred             CCCCchhHHHHHHHHHH-HHHHHhhc---cC--cceEEeCcHHhcCC
Confidence            12222233444544322 22233222   22  45555888877666

>PTZ00325 malate dehydrogenase; Provisional

Probab=98.08  E-value=2.3e-05  Score=68.18  Aligned_cols=146  Identities=16%  Similarity=0.121  Sum_probs=86.0

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++.+++.|+|++|.||..++..|+..+  .++++.|+.  .++.....+...  ...  ....+.+|+.+....++    
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~--~~~g~a~Dl~~~--~~~--~~v~~~td~~~~~~~l~----   75 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV--GAPGVAADLSHI--DTP--AKVTGYADGELWEKALR----   75 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC--CCcccccchhhc--CcC--ceEEEecCCCchHHHhC----
Confidence            345689999999999999999999666  479999993  222212222221  112  22335555443333333    


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc-cccccccCccC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA-HRFAYSEGIRF  183 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~-~~~~~~~~~~~  183 (255)
                         ..|+||+++|....+    .+++.+.+..|+...-.+++.+.++-.+         ++|+++|.- ....+...   
T Consensus        76 ---gaDvVVitaG~~~~~----~~tR~dll~~N~~i~~~i~~~i~~~~~~---------~iviv~SNPvdv~~~~~~---  136 (321)
T PTZ00325         76 ---GADLVLICAGVPRKP----GMTRDDLFNTNAPIVRDLVAAVASSAPK---------AIVGIVSNPVNSTVPIAA---  136 (321)
T ss_pred             ---CCCEEEECCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHCCC---------eEEEEecCcHHHHHHHHH---
Confidence               589999999975432    2345667888888777777666655433         666666643 22221110   


Q ss_pred             CCCCcccCCCCccchHHh
Q 025275          184 DKINDESAYNSFGAYGQS  201 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~s  201 (255)
                      ..+....++++...|+.+
T Consensus       137 ~~~~~~sg~p~~~viG~g  154 (321)
T PTZ00325        137 ETLKKAGVYDPRKLFGVT  154 (321)
T ss_pred             hhhhhccCCChhheeech
Confidence            001123355566677776

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.08  E-value=1.8e-05  Score=69.11  Aligned_cols=76  Identities=20%  Similarity=0.290  Sum_probs=55.4

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHc-C-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALR-G-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~-G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .++++|+++||||+|.||+.++++|+++ | .++++++|+.+++....+++..           .|+.   .+...+.  
T Consensus       151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-----------~~i~---~l~~~l~--  214 (340)
T PRK14982        151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-----------GKIL---SLEEALP--  214 (340)
T ss_pred             cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-----------ccHH---hHHHHHc--
Confidence            4689999999999999999999999864 5 4899999987776665554321           1222   2333333  


Q ss_pred             hcCCCCeeEEEEccCCCCC
Q 025275          103 NSQGRPLNILINNAGIMAS  121 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~  121 (255)
                           ..|++|++++....
T Consensus       215 -----~aDiVv~~ts~~~~  228 (340)
T PRK14982        215 -----EADIVVWVASMPKG  228 (340)
T ss_pred             -----cCCEEEECCcCCcC
Confidence                 58999999987543

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.98  E-value=6.5e-05  Score=65.64  Aligned_cols=119  Identities=13%  Similarity=0.056  Sum_probs=67.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHcC-------CeEEEEEeccch--HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           31 TAIVTGASSGIGTETARVLALRG-------VHVIMAVRNMAA--GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G-------~~Vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      +++||||+|.+|.+++..|+..+       .+|++.+++...  ++.....+...     ......|+....+....+  
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~-----~~~~~~~~~~~~~~~~~l--   76 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDC-----AFPLLKSVVATTDPEEAF--   76 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhc-----cccccCCceecCCHHHHh--
Confidence            58999999999999999999855       489999996531  21111011000     001111333222222233  


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                           ...|+|||+||....+. .+   -.+.++.|+.    +++...+.+.+..   ...+.+|.+|...
T Consensus        77 -----~~aDiVI~tAG~~~~~~-~~---R~~l~~~N~~----i~~~i~~~i~~~~---~~~~iiivvsNPv  131 (325)
T cd01336          77 -----KDVDVAILVGAMPRKEG-ME---RKDLLKANVK----IFKEQGEALDKYA---KKNVKVLVVGNPA  131 (325)
T ss_pred             -----CCCCEEEEeCCcCCCCC-CC---HHHHHHHHHH----HHHHHHHHHHHhC---CCCeEEEEecCcH
Confidence                 36899999999865432 22   2445555554    4444555554421   1256788888754

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=97.76  E-value=0.00068  Score=58.14  Aligned_cols=79  Identities=16%  Similarity=0.289  Sum_probs=54.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|++++|+|+++++|.++++.+...|.+|++++++.++.+.. .++     +..   ..+|..+.+..+.+.+...  ..
T Consensus       144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~---~~~~~~~~~~~~~~~~~~~--~~  212 (325)
T cd08253         144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELV-RQA-----GAD---AVFNYRAEDLADRILAATA--GQ  212 (325)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCC---EEEeCCCcCHHHHHHHHcC--CC
Confidence            578999999999999999999999999999999887654333 221     211   1135555444444433322  23


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .+|++++++|
T Consensus       213 ~~d~vi~~~~  222 (325)
T cd08253         213 GVDVIIEVLA  222 (325)
T ss_pred             ceEEEEECCc
Confidence            6999999987

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.75  E-value=0.00017  Score=55.78  Aligned_cols=77  Identities=19%  Similarity=0.324  Sum_probs=55.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .++++++++|+|+ |++|..+++.|++.| .+|++++|+.++.++..+++...       .+..+..+.++.   +    
T Consensus        15 ~~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~----   79 (155)
T cd01065          15 IELKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-------GIAIAYLDLEEL---L----   79 (155)
T ss_pred             CCCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-------ccceeecchhhc---c----
Confidence            3467889999998 899999999999996 68999999988777766665331       122344443322   2    


Q ss_pred             cCCCCeeEEEEccCCC
Q 025275          104 SQGRPLNILINNAGIM  119 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~  119 (255)
                         ...|++|++....
T Consensus        80 ---~~~Dvvi~~~~~~   92 (155)
T cd01065          80 ---AEADLIINTTPVG   92 (155)
T ss_pred             ---ccCCEEEeCcCCC
Confidence               3689999999754

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.70  E-value=0.00036  Score=61.31  Aligned_cols=83  Identities=16%  Similarity=0.308  Sum_probs=64.5

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc---------------------chHHHHHHHHHhhCCCCceE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM---------------------AAGKDVREAIVKEIPSAKVD   83 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~---------------------~~~~~~~~~~~~~~~~~~~~   83 (255)
                      .+++++|+|.|+ ||+|.++|+.|++.|. ++.++|++.                     .+...+.+.+.+..++.++.
T Consensus        21 ~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~   99 (338)
T PRK12475         21 KIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV   99 (338)
T ss_pred             hhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence            467899999997 6799999999999997 799999863                     35566667788877888888


Q ss_pred             EEEeCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           84 AMELDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        84 ~~~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      .+..|++. +.++.+++       ..|++|.+..
T Consensus       100 ~~~~~~~~-~~~~~~~~-------~~DlVid~~D  125 (338)
T PRK12475        100 PVVTDVTV-EELEELVK-------EVDLIIDATD  125 (338)
T ss_pred             EEeccCCH-HHHHHHhc-------CCCEEEEcCC
Confidence            88888874 34555543       4788887764

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.69  E-value=0.00025  Score=60.39  Aligned_cols=76  Identities=17%  Similarity=0.278  Sum_probs=55.4

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ..++|+++|+|+ ||+|++++..|++.|++|.+++|+.++.+++.+++...  + .+....  ..+      .      .
T Consensus       114 ~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~--~-~~~~~~--~~~------~------~  175 (270)
T TIGR00507       114 LRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRY--G-EIQAFS--MDE------L------P  175 (270)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhc--C-ceEEec--hhh------h------c
Confidence            356889999999 69999999999999999999999988887777776442  1 122221  111      0      1


Q ss_pred             CCCeeEEEEccCCC
Q 025275          106 GRPLNILINNAGIM  119 (255)
Q Consensus       106 ~g~id~lv~~ag~~  119 (255)
                      ....|++||+.+..
T Consensus       176 ~~~~DivInatp~g  189 (270)
T TIGR00507       176 LHRVDLIINATSAG  189 (270)
T ss_pred             ccCccEEEECCCCC
Confidence            13589999999753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.00013  Score=62.51  Aligned_cols=76  Identities=25%  Similarity=0.321  Sum_probs=62.7

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ...+|-||+|..|.-+|++|+++|.+..+.+||.+++..+..++     +.+...+++.+  +..+++...       +.
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~L-----G~~~~~~p~~~--p~~~~~~~~-------~~   72 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASL-----GPEAAVFPLGV--PAALEAMAS-------RT   72 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhc-----CccccccCCCC--HHHHHHHHh-------cc
Confidence            57899999999999999999999999999999999988887777     44555555554  666666665       57


Q ss_pred             eEEEEccCCC
Q 025275          110 NILINNAGIM  119 (255)
Q Consensus       110 d~lv~~ag~~  119 (255)
                      .+|+||+|.+
T Consensus        73 ~VVlncvGPy   82 (382)
T COG3268          73 QVVLNCVGPY   82 (382)
T ss_pred             eEEEeccccc
Confidence            9999999965

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.67  E-value=0.00011  Score=66.92  Aligned_cols=80  Identities=14%  Similarity=0.216  Sum_probs=54.4

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |++++|+++|||+++ +|.++|+.|++.|++|++.+++........+++...  +  +.+....  +...+   ..    
T Consensus         1 ~~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~--g--~~~~~~~--~~~~~---~~----   66 (447)
T PRK02472          1 TEYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEE--G--IKVICGS--HPLEL---LD----   66 (447)
T ss_pred             CCcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhc--C--CEEEeCC--CCHHH---hc----
Confidence            456789999999987 999999999999999999998765444444555443  2  2222211  11111   11    


Q ss_pred             CCCCeeEEEEccCCCC
Q 025275          105 QGRPLNILINNAGIMA  120 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~  120 (255)
                        ..+|+||+++|+..
T Consensus        67 --~~~d~vV~s~gi~~   80 (447)
T PRK02472         67 --EDFDLMVKNPGIPY   80 (447)
T ss_pred             --CcCCEEEECCCCCC
Confidence              14899999999763

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.66  E-value=0.0015  Score=50.05  Aligned_cols=116  Identities=15%  Similarity=0.240  Sum_probs=71.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCC--CceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPS--AKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++.|+|++|.+|.+++..|...+.  ++++.+++++.++.....+......  .......   .+++.+           
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~~~~-----------   67 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDYEAL-----------   67 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSGGGG-----------
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---cccccc-----------
Confidence            689999999999999999999985  6999999987666555555432111  1222222   333222           


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ...|++|..+|....+. .+   -.+.++.|..    +++...+.+.+.    ...+.++.+|...
T Consensus        68 ~~aDivvitag~~~~~g-~s---R~~ll~~N~~----i~~~~~~~i~~~----~p~~~vivvtNPv  121 (141)
T PF00056_consen   68 KDADIVVITAGVPRKPG-MS---RLDLLEANAK----IVKEIAKKIAKY----APDAIVIVVTNPV  121 (141)
T ss_dssp             TTESEEEETTSTSSSTT-SS---HHHHHHHHHH----HHHHHHHHHHHH----STTSEEEE-SSSH
T ss_pred             ccccEEEEecccccccc-cc---HHHHHHHhHh----HHHHHHHHHHHh----CCccEEEEeCCcH
Confidence            25899999999764332 22   3344555544    444445555443    2356777776643

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=97.66  E-value=0.00027  Score=56.65  Aligned_cols=77  Identities=21%  Similarity=0.216  Sum_probs=48.6

Q ss_pred             CCCcEEEEecC----------------CCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCC
Q 025275           27 GTGLTAIVTGA----------------SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS   90 (255)
Q Consensus        27 ~~~k~vlItG~----------------s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   90 (255)
                      ++||++|||+|                ||-.|.+||++++.+|++|+++..... +..          ...+..+  ++.
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~~----------p~~~~~i--~v~   67 (185)
T PF04127_consen    1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LPP----------PPGVKVI--RVE   67 (185)
T ss_dssp             -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS---------------TTEEEE--E-S
T ss_pred             CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-ccc----------cccceEE--Eec
Confidence            57899999987                578999999999999999999987742 110          1234444  566


Q ss_pred             CHHHHHHHHHHHhcCCCCeeEEEEccCCC
Q 025275           91 SLASVRKFASEYNSQGRPLNILINNAGIM  119 (255)
Q Consensus        91 ~~~si~~~~~~~~~~~g~id~lv~~ag~~  119 (255)
                      ..+++.+.+.+..   ...|++|++|++.
T Consensus        68 sa~em~~~~~~~~---~~~Di~I~aAAVs   93 (185)
T PF04127_consen   68 SAEEMLEAVKELL---PSADIIIMAAAVS   93 (185)
T ss_dssp             SHHHHHHHHHHHG---GGGSEEEE-SB--
T ss_pred             chhhhhhhhcccc---CcceeEEEecchh
Confidence            6666666655543   3459999999976

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=97.64  E-value=0.0012  Score=54.85  Aligned_cols=83  Identities=19%  Similarity=0.230  Sum_probs=60.5

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++++++|.|. ||+|..+++.|++.|. ++.++|.+                   ..+.+.+.+.+.+..|..++..+.
T Consensus         9 L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~   87 (231)
T cd00755           9 LRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE   87 (231)
T ss_pred             HhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence            56788888876 5999999999999997 78888854                   235556677777777777788777


Q ss_pred             eCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           87 LDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        87 ~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ..++. ++...++.      ..+|++|.+..
T Consensus        88 ~~i~~-~~~~~l~~------~~~D~VvdaiD  111 (231)
T cd00755          88 EFLTP-DNSEDLLG------GDPDFVVDAID  111 (231)
T ss_pred             eecCH-hHHHHHhc------CCCCEEEEcCC
Confidence            66663 34444442      24888887764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=97.63  E-value=0.0013  Score=56.89  Aligned_cols=79  Identities=23%  Similarity=0.346  Sum_probs=57.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+.+++|+|+++++|.++++.+...|++|++++++.+..+.. ..   .  +..   ..+|..+.+....+.+....  +
T Consensus       166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~---~--~~~---~~~~~~~~~~~~~~~~~~~~--~  234 (342)
T cd08266         166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERA-KE---L--GAD---YVIDYRKEDFVREVRELTGK--R  234 (342)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HH---c--CCC---eEEecCChHHHHHHHHHhCC--C
Confidence            578999999999999999999999999999998887654433 11   1  211   12366666656655554432  3


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++++++|
T Consensus       235 ~~d~~i~~~g  244 (342)
T cd08266         235 GVDVVVEHVG  244 (342)
T ss_pred             CCcEEEECCc
Confidence            6999999987

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=97.61  E-value=0.00035  Score=54.86  Aligned_cols=80  Identities=16%  Similarity=0.166  Sum_probs=58.6

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      .+.+.++-++|.||||-.|..+.+++.+.+-  +|+++.|...- +..        .+..+.....|.+..++...-++ 
T Consensus        13 Df~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~-d~a--------t~k~v~q~~vDf~Kl~~~a~~~q-   82 (238)
T KOG4039|consen   13 DFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELP-DPA--------TDKVVAQVEVDFSKLSQLATNEQ-   82 (238)
T ss_pred             HHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCC-Ccc--------ccceeeeEEechHHHHHHHhhhc-
Confidence            3667888999999999999999999999984  69999988421 111        14456667778776554433333 


Q ss_pred             HhcCCCCeeEEEEccCCC
Q 025275          102 YNSQGRPLNILINNAGIM  119 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~  119 (255)
                            ++|+++.+-|..
T Consensus        83 ------g~dV~FcaLgTT   94 (238)
T KOG4039|consen   83 ------GPDVLFCALGTT   94 (238)
T ss_pred             ------CCceEEEeeccc
Confidence                  799999987755

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.54  E-value=0.00077  Score=54.86  Aligned_cols=83  Identities=13%  Similarity=0.244  Sum_probs=63.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++++++|.| .||+|..+++.|+..|. ++.++|.+                   ..+.+...+.+.+..|..++..+
T Consensus        18 kl~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~   96 (202)
T TIGR02356        18 RLLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL   96 (202)
T ss_pred             HhcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46788999998 56999999999999997 79999976                   34566677778777777777777


Q ss_pred             EeCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           86 ELDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        86 ~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ...++. +.+..+++       ..|++|.+..
T Consensus        97 ~~~i~~-~~~~~~~~-------~~D~Vi~~~d  120 (202)
T TIGR02356        97 KERVTA-ENLELLIN-------NVDLVLDCTD  120 (202)
T ss_pred             hhcCCH-HHHHHHHh-------CCCEEEECCC
Confidence            666654 34554444       5799988764

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.50  E-value=0.0013  Score=55.17  Aligned_cols=83  Identities=13%  Similarity=0.289  Sum_probs=62.6

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++++|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+.+.+.+..|..++..+
T Consensus        29 ~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~  107 (245)
T PRK05690         29 KLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI  107 (245)
T ss_pred             HhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            468899999998 9999999999999997 68888754                   23455566777777777778888


Q ss_pred             EeCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           86 ELDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        86 ~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ...++. +.+..+++       ..|++|.+..
T Consensus       108 ~~~i~~-~~~~~~~~-------~~DiVi~~~D  131 (245)
T PRK05690        108 NARLDD-DELAALIA-------GHDLVLDCTD  131 (245)
T ss_pred             eccCCH-HHHHHHHh-------cCCEEEecCC
Confidence            777763 34455554       5799987764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=97.49  E-value=0.0021  Score=54.49  Aligned_cols=84  Identities=19%  Similarity=0.240  Sum_probs=56.7

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc-------------------chHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM-------------------AAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++..|+|.|+ ||+|..+|+.|++.|. ++.+++.+.                   .+.+.+.+.+.+..|+.++..+
T Consensus        27 kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i  105 (268)
T PRK15116         27 LFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV  105 (268)
T ss_pred             HhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence            367788888876 5999999999999994 788888651                   1233555666666666666666


Q ss_pred             EeCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           86 ELDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        86 ~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      .- .-+++.+..++.      ..+|+||.+.+
T Consensus       106 ~~-~i~~e~~~~ll~------~~~D~VIdaiD  130 (268)
T PRK15116        106 DD-FITPDNVAEYMS------AGFSYVIDAID  130 (268)
T ss_pred             ec-ccChhhHHHHhc------CCCCEEEEcCC
Confidence            43 323445555542      25788887765

>PRK05086 malate dehydrogenase; Provisional

Probab=97.48  E-value=0.00082  Score=58.43  Aligned_cols=118  Identities=15%  Similarity=0.090  Sum_probs=64.4

Q ss_pred             cEEEEecCCCchHHHHHHHHHH-cC--CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           30 LTAIVTGASSGIGTETARVLAL-RG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~-~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++++|.||+|++|.+++..|.. .+  ..+++.++++.......+ +...  ........++-.+   +...+       
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD-l~~~--~~~~~i~~~~~~d---~~~~l-------   67 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD-LSHI--PTAVKIKGFSGED---PTPAL-------   67 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh-hhcC--CCCceEEEeCCCC---HHHHc-------
Confidence            4689999999999999998855 33  468888887432111111 1110  1011111112222   21222       


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ...|++|.++|..+.+..    +-.+.+..|....-.+++.+.++-.        .+.|+.+|...
T Consensus        68 ~~~DiVIitaG~~~~~~~----~R~dll~~N~~i~~~ii~~i~~~~~--------~~ivivvsNP~  121 (312)
T PRK05086         68 EGADVVLISAGVARKPGM----DRSDLFNVNAGIVKNLVEKVAKTCP--------KACIGIITNPV  121 (312)
T ss_pred             CCCCEEEEcCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHhCC--------CeEEEEccCch
Confidence            258999999998654322    2344566676665555555544422        34555555544

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.46  E-value=0.0012  Score=57.98  Aligned_cols=82  Identities=18%  Similarity=0.359  Sum_probs=60.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc---------------------chHHHHHHHHHhhCCCCceE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM---------------------AAGKDVREAIVKEIPSAKVD   83 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~---------------------~~~~~~~~~~~~~~~~~~~~   83 (255)
                      .+++++|+|.|+ ||+|..++..|++.|. ++.++|.+.                     .+.....+.+++..+..++.
T Consensus        21 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~   99 (339)
T PRK07688         21 KLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE   99 (339)
T ss_pred             HhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence            467889999998 7999999999999998 799999863                     34455566777776777777


Q ss_pred             EEEeCCCCHHHHHHHHHHHhcCCCCeeEEEEcc
Q 025275           84 AMELDVSSLASVRKFASEYNSQGRPLNILINNA  116 (255)
Q Consensus        84 ~~~~Dl~~~~si~~~~~~~~~~~g~id~lv~~a  116 (255)
                      .+..+++. +.+..+++       ..|++|.+.
T Consensus       100 ~~~~~~~~-~~~~~~~~-------~~DlVid~~  124 (339)
T PRK07688        100 AIVQDVTA-EELEELVT-------GVDLIIDAT  124 (339)
T ss_pred             EEeccCCH-HHHHHHHc-------CCCEEEEcC
Confidence            87777764 33444443       356666654

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.46  E-value=0.001  Score=59.35  Aligned_cols=83  Identities=19%  Similarity=0.311  Sum_probs=63.6

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++++|+|.|+ ||+|..++..|++.|. ++.+++++                   ..+.+.+.+.+.+..|..++..+
T Consensus       132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~  210 (376)
T PRK08762        132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAV  210 (376)
T ss_pred             HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            367888999966 7999999999999998 69999987                   45677777888877776677777


Q ss_pred             EeCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           86 ELDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        86 ~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ...+++ +.+..+++       ..|+||++..
T Consensus       211 ~~~~~~-~~~~~~~~-------~~D~Vv~~~d  234 (376)
T PRK08762        211 QERVTS-DNVEALLQ-------DVDVVVDGAD  234 (376)
T ss_pred             eccCCh-HHHHHHHh-------CCCEEEECCC
Confidence            666654 34555554       4799998875

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.46  E-value=0.0043  Score=53.78  Aligned_cols=119  Identities=13%  Similarity=0.190  Sum_probs=74.7

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           30 LTAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++.|.|+ |++|.+++..|+..|  .+|++++++.+..+.....+.....  ....... .  .+.+.    +      
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~--~~~~~----l------   66 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-A--GDYSD----C------   66 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-c--CCHHH----h------
Confidence            35788886 899999999999999  4799999999887777776654321  1122221 1  23221    1      


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                       ...|++|+++|.+..+. .+-   .+.++.|..    +++...+.+.+.    ...+.+|++|......
T Consensus        67 -~~aDIVIitag~~~~~g-~~R---~dll~~N~~----i~~~~~~~i~~~----~~~~~vivvsNP~d~~  123 (306)
T cd05291          67 -KDADIVVITAGAPQKPG-ETR---LDLLEKNAK----IMKSIVPKIKAS----GFDGIFLVASNPVDVI  123 (306)
T ss_pred             -CCCCEEEEccCCCCCCC-CCH---HHHHHHHHH----HHHHHHHHHHHh----CCCeEEEEecChHHHH
Confidence             25899999999865432 222   233444444    444455555543    2356888888765433

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=97.43  E-value=0.003  Score=68.34  Aligned_cols=186  Identities=15%  Similarity=0.087  Sum_probs=113.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+.++.++|++.+++++.+++.+|.++|..|+++... +........+     +..+-.+.+.-.|+.++..+++++.+.
T Consensus      1752 ~~~~~~~~v~~d~~~~~~~L~~~L~~~G~~v~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1825 (2582)
T TIGR02813      1752 KQSGANALVIDDDGHNAGVLAEKLIAAGWQVAVVRSP-WVVSHSASPL-----ASAIASVTLGTIDDTSIEAVIKDIEEK 1825 (2582)
T ss_pred             cccCceeEEEcCCcchHHHHHHHHHhCCCeEEEeecc-cccccccccc-----ccccccccccccchHHHHHHHHhhhcc
Confidence            3457888999889999999999999999998777422 1110000000     112223344455567788888888887


Q ss_pred             CCCeeEEEEccCCCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          106 GRPLNILINNAGIMASPFM-LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      .+.++.+||..+......+ .+.....+.-...+...|.++|.+.+.+..     ...+.++.++...|-.++.+.....
T Consensus      1826 ~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~ak~~~~~l~~-----~~~~~~~~vsr~~G~~g~~~~~~~~ 1900 (2582)
T TIGR02813      1826 TAQIDGFIHLQPQHKSVADKVDAIELPEAAKQSLMLAFLFAKLLNVKLAT-----NARASFVTVSRIDGGFGYSNGDADS 1900 (2582)
T ss_pred             ccccceEEEeccccccccccccccccchhhHHHHHHHHHHHHhhchhhcc-----CCCeEEEEEEecCCccccCCccccc
Confidence            8889999998875432111 010011122234456677788877665543     3456899999887665433211000


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCC
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPG  231 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG  231 (255)
                            +... ..-....+++.+|+|+++.|+..-.  .|...+.|.
T Consensus      1901 ------~~~~-~~~~~~~a~l~Gl~Ktl~~E~P~~~--~r~vDl~~~ 1938 (2582)
T TIGR02813      1901 ------GTQQ-VKAELNQAALAGLTKTLNHEWNAVF--CRALDLAPK 1938 (2582)
T ss_pred             ------cccc-cccchhhhhHHHHHHhHHHHCCCCe--EEEEeCCCC
Confidence                  0000 0013357889999999999998654  777777775

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.43  E-value=0.0012  Score=57.70  Aligned_cols=117  Identities=13%  Similarity=0.072  Sum_probs=70.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC-------eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHH--HHH--
Q 025275           31 TAIVTGASSGIGTETARVLALRGV-------HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVR--KFA--   99 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~-------~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~--~~~--   99 (255)
                      ++.|+|++|.+|.+++..|+..|.       ++++.|++++..              .......|+.|.....  ...  
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~--------------~a~g~~~Dl~d~~~~~~~~~~~~   66 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK--------------VLEGVVMELMDCAFPLLDGVVPT   66 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc--------------ccceeEeehhcccchhcCceecc
Confidence            478999999999999999998663       499999865420              1233445555543110  000  


Q ss_pred             HHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          100 SEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ....+.+...|++|++||.....    .+++.+.+..|+.    +++.+.+.+.+..   .+.+.+|.+|...
T Consensus        67 ~~~~~~~~~aDiVVitAG~~~~~----~~tr~~ll~~N~~----i~k~i~~~i~~~~---~~~~iiivvsNPv  128 (324)
T TIGR01758        67 HDPAVAFTDVDVAILVGAFPRKE----GMERRDLLSKNVK----IFKEQGRALDKLA---KKDCKVLVVGNPA  128 (324)
T ss_pred             CChHHHhCCCCEEEEcCCCCCCC----CCcHHHHHHHHHH----HHHHHHHHHHhhC---CCCeEEEEeCCcH
Confidence            01122334689999999975442    1234555665554    4555555555421   1356788887754

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK06849 hypothetical protein; Provisional

Probab=97.41  E-value=0.0013  Score=59.02  Aligned_cols=83  Identities=18%  Similarity=0.117  Sum_probs=54.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +.|+|||||++..+|.++++.|.+.|++|++++.+........+.+      .....+...-.+++...+.+.++.++. 
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~------d~~~~~p~p~~d~~~~~~~L~~i~~~~-   75 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAV------DGFYTIPSPRWDPDAYIQALLSIVQRE-   75 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhh------hheEEeCCCCCCHHHHHHHHHHHHHHc-
Confidence            3589999999999999999999999999999998865433221111      122223223334444444444444444 


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .+|++|-...
T Consensus        76 ~id~vIP~~e   85 (389)
T PRK06849         76 NIDLLIPTCE   85 (389)
T ss_pred             CCCEEEECCh
Confidence            3899987765

>cd00704 MDH Malate dehydrogenase

Probab=97.41  E-value=0.0017  Score=56.79  Aligned_cols=115  Identities=13%  Similarity=0.145  Sum_probs=68.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC-------eEEEEEecc--chHHHHHHHHHhhCCCCceEEEEeCCCCHHH--HH--H
Q 025275           31 TAIVTGASSGIGTETARVLALRGV-------HVIMAVRNM--AAGKDVREAIVKEIPSAKVDAMELDVSSLAS--VR--K   97 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s--i~--~   97 (255)
                      ++.||||+|.+|..++..|+..|.       ++++.+++.  +.                ......|+.|...  ..  .
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~----------------~~g~~~Dl~d~~~~~~~~~~   65 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKA----------------LEGVVMELQDCAFPLLKGVV   65 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCc----------------cceeeeehhhhcccccCCcE
Confidence            589999999999999999998763       499999886  32                2233344444310  00  0


Q ss_pred             HHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           98 FASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        98 ~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      +.....+.+...|++|+.||....+. .+   -.+.+..|+.    +++.+.+.+.+..   .+.+.+|.+|...
T Consensus        66 i~~~~~~~~~~aDiVVitAG~~~~~g-~t---R~dll~~N~~----i~~~i~~~i~~~~---~~~~iiivvsNPv  129 (323)
T cd00704          66 ITTDPEEAFKDVDVAILVGAFPRKPG-ME---RADLLRKNAK----IFKEQGEALNKVA---KPTVKVLVVGNPA  129 (323)
T ss_pred             EecChHHHhCCCCEEEEeCCCCCCcC-Cc---HHHHHHHhHH----HHHHHHHHHHHhC---CCCeEEEEeCCcH
Confidence            00111222346899999999865432 22   2334554444    4555555555421   1356788777654

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.39  E-value=0.0066  Score=52.88  Aligned_cols=122  Identities=11%  Similarity=0.163  Sum_probs=77.5

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCC-CceEEEEeCCCCHHHHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPS-AKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .-+++++.|+|+ |.+|.+++..|+..|.  ++++.+++.+.++.....+....+. .++... .  .+.+.    ++  
T Consensus         3 ~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~--~~~~~----~~--   72 (315)
T PRK00066          3 KKQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-A--GDYSD----CK--   72 (315)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-e--CCHHH----hC--
Confidence            345678999998 9999999999999996  7999999988877666666544221 122222 1  22221    22  


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                           ..|++|..||....+. .+-   .+.+..|..    +++.+.+.+.+.    ...+.+|++|.....
T Consensus        73 -----~adivIitag~~~k~g-~~R---~dll~~N~~----i~~~i~~~i~~~----~~~~~vivvsNP~d~  127 (315)
T PRK00066         73 -----DADLVVITAGAPQKPG-ETR---LDLVEKNLK----IFKSIVGEVMAS----GFDGIFLVASNPVDI  127 (315)
T ss_pred             -----CCCEEEEecCCCCCCC-CCH---HHHHHHHHH----HHHHHHHHHHHh----CCCeEEEEccCcHHH
Confidence                 5899999999865432 222   233444444    444444555442    235688888876543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.38  E-value=0.0028  Score=47.96  Aligned_cols=80  Identities=20%  Similarity=0.397  Sum_probs=62.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEEEeC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAMELD   88 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~D   88 (255)
                      +++++|.|+ |++|..+++.|++.|. ++.++|.+                   ..+.+.+.+.+++..|+.++..+..+
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            467788776 6899999999999998 69888863                   33567777888888888899999988


Q ss_pred             CCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           89 VSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        89 l~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ++ ++....+++       ..|++|.+..
T Consensus        81 ~~-~~~~~~~~~-------~~d~vi~~~d  101 (135)
T PF00899_consen   81 ID-EENIEELLK-------DYDIVIDCVD  101 (135)
T ss_dssp             CS-HHHHHHHHH-------TSSEEEEESS
T ss_pred             cc-ccccccccc-------CCCEEEEecC
Confidence            84 455666664       5799998764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=97.37  E-value=0.00058  Score=57.56  Aligned_cols=75  Identities=13%  Similarity=0.249  Sum_probs=57.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++||+|||+- |+.++++|.+.|+.|+++.++....+...    .    .....+..+..|.+++..++++.     .+
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~----~----~g~~~v~~g~l~~~~l~~~l~~~-----~i   66 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYP----I----HQALTVHTGALDPQELREFLKRH-----SI   66 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcccccc----c----cCCceEEECCCCHHHHHHHHHhc-----CC
Confidence            36999999998 99999999999999999988876432221    1    11234556777888888888764     69


Q ss_pred             eEEEEccCC
Q 025275          110 NILINNAGI  118 (255)
Q Consensus       110 d~lv~~ag~  118 (255)
                      |+||+.+..
T Consensus        67 ~~VIDAtHP   75 (256)
T TIGR00715        67 DILVDATHP   75 (256)
T ss_pred             CEEEEcCCH
Confidence            999998863

This enzyme was found to be a monomer by gel filtration.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.36  E-value=0.00041  Score=59.31  Aligned_cols=49  Identities=16%  Similarity=0.263  Sum_probs=43.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIV   74 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~   74 (255)
                      .++++++++|+|+ ||+|++++..|++.| .+|++++|+.++.+++.+++.
T Consensus       119 ~~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~  168 (278)
T PRK00258        119 VDLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFG  168 (278)
T ss_pred             CCCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence            4678899999997 899999999999999 689999999888877777664

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.36  E-value=0.00015  Score=58.94  Aligned_cols=48  Identities=27%  Similarity=0.198  Sum_probs=41.2

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA   72 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~   72 (255)
                      ..+++||+++|+|.+ .+|+.+++.|.+.|++|++.+++.+.+++..+.
T Consensus        23 ~~~l~gk~v~I~G~G-~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~   70 (200)
T cd01075          23 TDSLEGKTVAVQGLG-KVGYKLAEHLLEEGAKLIVADINEEAVARAAEL   70 (200)
T ss_pred             CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            567899999999996 899999999999999999999987766555443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.35  E-value=0.0015  Score=55.96  Aligned_cols=80  Identities=16%  Similarity=0.276  Sum_probs=56.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++|+++|.|+ ||.|++++..|++.|+ ++++.+|+.++.+++.+.+....+...+.  ..+.   ........    
T Consensus       124 ~~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~--~~~~---~~~~~~~~----  193 (283)
T PRK14027        124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV--GVDA---RGIEDVIA----  193 (283)
T ss_pred             CcCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEE--ecCH---hHHHHHHh----
Confidence            466899999998 8999999999999997 69999999998888888765433221121  1222   11222222    


Q ss_pred             CCCCeeEEEEccCC
Q 025275          105 QGRPLNILINNAGI  118 (255)
Q Consensus       105 ~~g~id~lv~~ag~  118 (255)
                         ..|++||+...
T Consensus       194 ---~~divINaTp~  204 (283)
T PRK14027        194 ---AADGVVNATPM  204 (283)
T ss_pred             ---hcCEEEEcCCC
Confidence               47999998754

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.35  E-value=0.00036  Score=64.98  Aligned_cols=49  Identities=29%  Similarity=0.409  Sum_probs=42.0

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAI   73 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~   73 (255)
                      ..++++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++
T Consensus       374 ~~~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l  422 (529)
T PLN02520        374 GSPLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELADAV  422 (529)
T ss_pred             ccCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence            34578899999999 69999999999999999999999887776666554

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.34  E-value=0.00091  Score=57.37  Aligned_cols=50  Identities=20%  Similarity=0.252  Sum_probs=43.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhh
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKE   76 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~   76 (255)
                      ++++++++|.|+ ||.|++++..|++.|+ +|++++|+.++.+.+.+.+...
T Consensus       124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~  174 (284)
T PRK12549        124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNAR  174 (284)
T ss_pred             CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhh
Confidence            467889999997 6799999999999998 7999999999988888887654

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.34  E-value=0.0022  Score=52.64  Aligned_cols=82  Identities=16%  Similarity=0.285  Sum_probs=61.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc------------------chHHHHHHHHHhhCCCCceEEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM------------------AAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      .+++++++|.|+ ||+|..+++.|++.|. ++.+.|.+.                  .+.+.+.+.+.+..++.++..+.
T Consensus        25 ~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~  103 (212)
T PRK08644         25 KLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN  103 (212)
T ss_pred             HHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            367788999986 7999999999999998 599998761                  34555666677776777777777


Q ss_pred             eCCCCHHHHHHHHHHHhcCCCCeeEEEEcc
Q 025275           87 LDVSSLASVRKFASEYNSQGRPLNILINNA  116 (255)
Q Consensus        87 ~Dl~~~~si~~~~~~~~~~~g~id~lv~~a  116 (255)
                      ..+++ +.+..+++       ..|++|.+.
T Consensus       104 ~~i~~-~~~~~~~~-------~~DvVI~a~  125 (212)
T PRK08644        104 EKIDE-DNIEELFK-------DCDIVVEAF  125 (212)
T ss_pred             eecCH-HHHHHHHc-------CCCEEEECC
Confidence            77765 33444443       578888775

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.32  E-value=0.0024  Score=56.60  Aligned_cols=83  Identities=19%  Similarity=0.253  Sum_probs=61.7

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc-------------------chHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM-------------------AAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..|..++..+
T Consensus        25 ~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~  103 (355)
T PRK05597         25 SLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS  103 (355)
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence            467899999988 7999999999999997 688888752                   4667778888888888888887


Q ss_pred             EeCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           86 ELDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        86 ~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ...++.+ ....+++       ..|+||.+..
T Consensus       104 ~~~i~~~-~~~~~~~-------~~DvVvd~~d  127 (355)
T PRK05597        104 VRRLTWS-NALDELR-------DADVILDGSD  127 (355)
T ss_pred             EeecCHH-HHHHHHh-------CCCEEEECCC
Confidence            7777643 3333333       3566665543

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.30  E-value=0.00099  Score=57.10  Aligned_cols=79  Identities=16%  Similarity=0.186  Sum_probs=55.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++++++|.|+ ||.|++++..|++.|+ +|.++.|+.++.+++.+++...   ..+  ..  +...+++...      
T Consensus       122 ~~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~---~~~--~~--~~~~~~~~~~------  187 (282)
T TIGR01809       122 PLAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV---GVI--TR--LEGDSGGLAI------  187 (282)
T ss_pred             ccCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc---Ccc--ee--ccchhhhhhc------
Confidence            467899999976 8999999999999997 6999999998888887776432   111  11  1111122111      


Q ss_pred             CCCCeeEEEEccCCC
Q 025275          105 QGRPLNILINNAGIM  119 (255)
Q Consensus       105 ~~g~id~lv~~ag~~  119 (255)
                       ....|+|||+....
T Consensus       188 -~~~~DiVInaTp~g  201 (282)
T TIGR01809       188 -EKAAEVLVSTVPAD  201 (282)
T ss_pred             -ccCCCEEEECCCCC
Confidence             13589999998753

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.29  E-value=0.00089  Score=60.39  Aligned_cols=75  Identities=15%  Similarity=0.279  Sum_probs=53.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++++++|.|+ |++|+.+++.|++.|+ +++++.|+.++.+.+.+++.    .  ...+     ..++....+.    
T Consensus       178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~----~--~~~~-----~~~~l~~~l~----  241 (414)
T PRK13940        178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR----N--ASAH-----YLSELPQLIK----  241 (414)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc----C--CeEe-----cHHHHHHHhc----
Confidence            578999999998 9999999999999996 69999999887766666542    1  1111     1223333333    


Q ss_pred             CCCCeeEEEEccCCC
Q 025275          105 QGRPLNILINNAGIM  119 (255)
Q Consensus       105 ~~g~id~lv~~ag~~  119 (255)
                         ..|++|++.+.+
T Consensus       242 ---~aDiVI~aT~a~  253 (414)
T PRK13940        242 ---KADIIIAAVNVL  253 (414)
T ss_pred             ---cCCEEEECcCCC
Confidence               468888888754

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.29  E-value=0.0026  Score=52.77  Aligned_cols=83  Identities=14%  Similarity=0.288  Sum_probs=62.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++++|+|.| .||+|.++++.|++.|. ++.++|.+                   ..+.+.+.+.+++..|..++..+
T Consensus        18 ~L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          18 KLKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46788999998 56999999999999997 67777543                   33566777778887777778888


Q ss_pred             EeCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           86 ELDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        86 ~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ..+++ .+.+..+++       .+|++|.+..
T Consensus        97 ~~~i~-~~~~~~~~~-------~~DvVi~~~d  120 (228)
T cd00757          97 NERLD-AENAEELIA-------GYDLVLDCTD  120 (228)
T ss_pred             cceeC-HHHHHHHHh-------CCCEEEEcCC
Confidence            77774 344555554       4799998875

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.25  E-value=0.0026  Score=55.58  Aligned_cols=163  Identities=13%  Similarity=0.048  Sum_probs=93.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-------eEEEEEeccch--HHHHHHHHHhhC-CC-CceEEEEeCCCCHHHHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-------HVIMAVRNMAA--GKDVREAIVKEI-PS-AKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-------~Vi~~~r~~~~--~~~~~~~~~~~~-~~-~~~~~~~~Dl~~~~si~~~   98 (255)
                      +++.|+|++|.+|..++..|+..|.       ++++.+.++..  ++.....+.... +. .++.+   .-.+       
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i---~~~~-------   72 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI---TDDP-------   72 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE---ecCc-------
Confidence            4789999999999999999998885       69999985432  332222222211 10 01111   1111       


Q ss_pred             HHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275           99 ASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      .+.    +...|++|.+||....+. .+   -.+.+..|+    -+++.+.+.+.+..   .+.+.+|.+|...-+..+.
T Consensus        73 ~~~----~~daDivvitaG~~~k~g-~t---R~dll~~N~----~i~~~i~~~i~~~~---~~~~iiivvsNPvD~~t~~  137 (322)
T cd01338          73 NVA----FKDADWALLVGAKPRGPG-ME---RADLLKANG----KIFTAQGKALNDVA---SRDVKVLVVGNPCNTNALI  137 (322)
T ss_pred             HHH----hCCCCEEEEeCCCCCCCC-Cc---HHHHHHHHH----HHHHHHHHHHHhhC---CCCeEEEEecCcHHHHHHH
Confidence            111    225899999999865432 22   223344444    45555666665531   1357888888754332211


Q ss_pred             cCccCCCCCcccC-CCCccchHHhHHHHHHHHHHHHHHHhhCCCcEE
Q 025275          179 EGIRFDKINDESA-YNSFGAYGQSKLANILHAKELAKHLKEDGVNIT  224 (255)
Q Consensus       179 ~~~~~~~~~~~~~-~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~  224 (255)
                      -       ....+ ++....|+.++..-.-|...++..+.-.-..|+
T Consensus       138 ~-------~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~  177 (322)
T cd01338         138 A-------MKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVK  177 (322)
T ss_pred             H-------HHHcCCCChHheEEehHHHHHHHHHHHHHHhCcChhHeE
Confidence            0       01112 455668888888877888888887754322255

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.22  E-value=0.0033  Score=49.90  Aligned_cols=78  Identities=18%  Similarity=0.352  Sum_probs=55.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc------------------chHHHHHHHHHhhCCCCceEEEEeCCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV-HVIMAVRNM------------------AAGKDVREAIVKEIPSAKVDAMELDVSS   91 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   91 (255)
                      +++|.|+ ||+|..+++.|++.|. ++.+.|.+.                  .+.+...+.+++..|..++..+...++.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            3678875 8999999999999998 599999874                  3445556666666666777777666654


Q ss_pred             HHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           92 LASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        92 ~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                       +.+..+++       ..|++|.+..
T Consensus        80 -~~~~~~l~-------~~DlVi~~~d   97 (174)
T cd01487          80 -NNLEGLFG-------DCDIVVEAFD   97 (174)
T ss_pred             -hhHHHHhc-------CCCEEEECCC
Confidence             33444444       5788887743

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.22  E-value=0.0031  Score=51.25  Aligned_cols=82  Identities=20%  Similarity=0.323  Sum_probs=56.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec---cc---------------hHHHHHHHHHhhCCCCceEEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN---MA---------------AGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~---~~---------------~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      .++.++++|.|+ ||+|..+|..|++.|. ++++.|++   .+               +.+...+.+....|..++..+.
T Consensus        18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            367788999998 6899999999999998 69999987   22               2223344455555556666666


Q ss_pred             eCCCCHHHHHHHHHHHhcCCCCeeEEEEcc
Q 025275           87 LDVSSLASVRKFASEYNSQGRPLNILINNA  116 (255)
Q Consensus        87 ~Dl~~~~si~~~~~~~~~~~g~id~lv~~a  116 (255)
                      .+++. +.+..+++       ..|++|-+.
T Consensus        97 ~~i~~-~~~~~~~~-------~~DlVi~a~  118 (200)
T TIGR02354        97 EKITE-ENIDKFFK-------DADIVCEAF  118 (200)
T ss_pred             eeCCH-hHHHHHhc-------CCCEEEECC
Confidence            66653 33444443       467777663

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=97.18  E-value=0.0022  Score=56.04  Aligned_cols=80  Identities=19%  Similarity=0.300  Sum_probs=53.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.+++|+|++|++|..+++.+...|++|+.+.++.++.+.+.+.+     +.. .++  |..+.+.....+.+...  +
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l-----Ga~-~vi--~~~~~~~~~~~i~~~~~--~  220 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL-----GFD-DAF--NYKEEPDLDAALKRYFP--N  220 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc-----CCc-eeE--EcCCcccHHHHHHHhCC--C
Confidence            5889999999999999999888889999999888876644443323     221 122  32222233333443322  4


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|+++.+.|
T Consensus       221 gvd~v~d~~g  230 (338)
T cd08295         221 GIDIYFDNVG  230 (338)
T ss_pred             CcEEEEECCC
Confidence            6999998887

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.16  E-value=0.0032  Score=54.11  Aligned_cols=50  Identities=22%  Similarity=0.296  Sum_probs=39.9

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccc---hHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMA---AGKDVREAIV   74 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~---~~~~~~~~~~   74 (255)
                      ..++++|+++|.|+ ||-+++++..|+..|+ +|.+++|+.+   +.+++.+.+.
T Consensus       119 ~~~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~  172 (288)
T PRK12749        119 GFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVN  172 (288)
T ss_pred             CCCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhh
Confidence            34578899999997 5669999999999997 7999999954   5666666553

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.10  E-value=0.0061  Score=46.54  Aligned_cols=78  Identities=19%  Similarity=0.304  Sum_probs=56.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEEEeCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAMELDVS   90 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   90 (255)
                      +++|.|+ ||+|..+++.|++.|. ++.++|.+                   ..+.+.+.+.+++..|+.++..+..++.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            3788887 8999999999999998 68888754                   2345566777777777777777777766


Q ss_pred             CHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           91 SLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        91 ~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ... ....+       ...|++|.+..
T Consensus        80 ~~~-~~~~~-------~~~diVi~~~d   98 (143)
T cd01483          80 EDN-LDDFL-------DGVDLVIDAID   98 (143)
T ss_pred             hhh-HHHHh-------cCCCEEEECCC
Confidence            533 22222       36788887775

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=97.09  E-value=0.0031  Score=55.59  Aligned_cols=80  Identities=16%  Similarity=0.280  Sum_probs=52.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.+++|+|++|++|...++.+...|++|+.++++.++.+.+.+++     +.. ..+  |-.+.+.+...+.+...  +
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l-----Ga~-~vi--~~~~~~~~~~~i~~~~~--~  227 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL-----GFD-EAF--NYKEEPDLDAALKRYFP--E  227 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc-----CCC-EEE--ECCCcccHHHHHHHHCC--C
Confidence            5889999999999999998888889999998888776544333232     222 122  32222233334443322  3


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|+++.+.|
T Consensus       228 gvD~v~d~vG  237 (348)
T PLN03154        228 GIDIYFDNVG  237 (348)
T ss_pred             CcEEEEECCC
Confidence            6999999887

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.08  E-value=0.0081  Score=50.10  Aligned_cols=79  Identities=20%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ..+.+++|+|+++ +|.++++.+...|.+|++++++.++.+.. +.+     +.. ..  .|..+.+....+.   ....
T Consensus       133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~-~~--~~~~~~~~~~~~~---~~~~  199 (271)
T cd05188         133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELA-KEL-----GAD-HV--IDYKEEDLEEELR---LTGG  199 (271)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHh-----CCc-ee--ccCCcCCHHHHHH---HhcC
Confidence            3578999999999 99999999999999999998886553332 221     211 12  2333333333333   2233


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +.+|+++++++.
T Consensus       200 ~~~d~vi~~~~~  211 (271)
T cd05188         200 GGADVVIDAVGG  211 (271)
T ss_pred             CCCCEEEECCCC
Confidence            579999999874

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.07  E-value=0.0069  Score=52.62  Aligned_cols=121  Identities=21%  Similarity=0.209  Sum_probs=68.2

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC--eEEEEEecc--chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV--HVIMAVRNM--AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++.|+|++|.+|.+++..|+..|.  +|++++++.  +.++.....+.......... ..+..++.  .+ .+.     
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~-~~i~~~~d--~~-~l~-----   71 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGID-AEIKISSD--LS-DVA-----   71 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCC-cEEEECCC--HH-HhC-----
Confidence            4689999999999999999999985  499999954  44433333332210000000 01112211  11 122     


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                        ..|++|.++|.+..+. .+   -.+.++.|+.-...+++    .+.+.    ...+.+|.+++..-
T Consensus        72 --~aDiViitag~p~~~~-~~---r~dl~~~n~~i~~~~~~----~i~~~----~~~~~viv~~npvd  125 (309)
T cd05294          72 --GSDIVIITAGVPRKEG-MS---RLDLAKKNAKIVKKYAK----QIAEF----APDTKILVVTNPVD  125 (309)
T ss_pred             --CCCEEEEecCCCCCCC-CC---HHHHHHHHHHHHHHHHH----HHHHH----CCCeEEEEeCCchH
Confidence              5899999999754321 22   12344545544444444    44432    23568888888653

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=97.06  E-value=0.0063  Score=49.34  Aligned_cols=82  Identities=18%  Similarity=0.329  Sum_probs=57.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc---------------------chHHHHHHHHHhhCCCCceEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM---------------------AAGKDVREAIVKEIPSAKVDA   84 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~---------------------~~~~~~~~~~~~~~~~~~~~~   84 (255)
                      +++.+|+|.|++| +|.++++.|+..|. ++.++|.+.                     .+.+...+.+++..|+.+++.
T Consensus        17 L~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~   95 (198)
T cd01485          17 LRSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI   95 (198)
T ss_pred             HhhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence            5678899998776 99999999999998 588887541                     133445666777777777777


Q ss_pred             EEeCCCC-HHHHHHHHHHHhcCCCCeeEEEEcc
Q 025275           85 MELDVSS-LASVRKFASEYNSQGRPLNILINNA  116 (255)
Q Consensus        85 ~~~Dl~~-~~si~~~~~~~~~~~g~id~lv~~a  116 (255)
                      +..++.+ .+....++.       ..|++|.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~-------~~dvVi~~~  121 (198)
T cd01485          96 VEEDSLSNDSNIEEYLQ-------KFTLVIATE  121 (198)
T ss_pred             EecccccchhhHHHHHh-------CCCEEEECC
Confidence            7766653 233444444       478888654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=97.04  E-value=0.0051  Score=49.86  Aligned_cols=81  Identities=20%  Similarity=0.303  Sum_probs=57.7

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++++|+|.|++ |+|.++++.|+..|. ++.++|.+                   ..+.+...+.+++..|..++..+
T Consensus        18 ~L~~s~VlIiG~g-glG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~   96 (197)
T cd01492          18 RLRSARILLIGLK-GLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVD   96 (197)
T ss_pred             HHHhCcEEEEcCC-HHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEE
Confidence            3577889999865 599999999999998 58888754                   22455667777888777777777


Q ss_pred             EeCCCCHHHHHHHHHHHhcCCCCeeEEEEcc
Q 025275           86 ELDVSSLASVRKFASEYNSQGRPLNILINNA  116 (255)
Q Consensus        86 ~~Dl~~~~si~~~~~~~~~~~g~id~lv~~a  116 (255)
                      ...+++  .....++       .+|++|.+.
T Consensus        97 ~~~~~~--~~~~~~~-------~~dvVi~~~  118 (197)
T cd01492          97 TDDISE--KPEEFFS-------QFDVVVATE  118 (197)
T ss_pred             ecCccc--cHHHHHh-------CCCEEEECC
Confidence            766652  1233333       578888665

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd08293 PTGR2 Prostaglandin reductase

Probab=97.04  E-value=0.0032  Score=55.06  Aligned_cols=78  Identities=17%  Similarity=0.255  Sum_probs=51.8

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +.++||+||+|++|...++.+...|+ +|+.++++.++.+.+.+++     +.. ..+  |..++ ++.+.+.++..  +
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l-----Ga~-~vi--~~~~~-~~~~~i~~~~~--~  223 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL-----GFD-AAI--NYKTD-NVAERLRELCP--E  223 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc-----CCc-EEE--ECCCC-CHHHHHHHHCC--C
Confidence            38999999999999998888888898 7999988876654444333     222 122  22222 23333444322  4


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|+++.+.|
T Consensus       224 gvd~vid~~g  233 (345)
T cd08293         224 GVDVYFDNVG  233 (345)
T ss_pred             CceEEEECCC
Confidence            6999999887

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK08223 hypothetical protein; Validated

Probab=97.04  E-value=0.0045  Score=52.87  Aligned_cols=82  Identities=13%  Similarity=0.203  Sum_probs=60.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++.+|+|.|+ ||+|..++..|+..|. ++.++|.+                   ..+.+...+.+.+..|..++..+
T Consensus        24 kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~  102 (287)
T PRK08223         24 RLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF  102 (287)
T ss_pred             HHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            467889999987 5999999999999997 68888864                   23555666777777777777777


Q ss_pred             EeCCCCHHHHHHHHHHHhcCCCCeeEEEEcc
Q 025275           86 ELDVSSLASVRKFASEYNSQGRPLNILINNA  116 (255)
Q Consensus        86 ~~Dl~~~~si~~~~~~~~~~~g~id~lv~~a  116 (255)
                      ...++.+ .+.++++       ..|+||.+.
T Consensus       103 ~~~l~~~-n~~~ll~-------~~DlVvD~~  125 (287)
T PRK08223        103 PEGIGKE-NADAFLD-------GVDVYVDGL  125 (287)
T ss_pred             ecccCcc-CHHHHHh-------CCCEEEECC
Confidence            7777643 3455554       468887554

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=97.01  E-value=0.0057  Score=52.25  Aligned_cols=80  Identities=19%  Similarity=0.329  Sum_probs=54.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+.+++|+|+++++|+.+++.+...|++|++++++.+..+.. +++     +.. .  .+|..+.+....+.+.. . .+
T Consensus       139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~-----g~~-~--~~~~~~~~~~~~~~~~~-~-~~  207 (323)
T cd05276         139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC-RAL-----GAD-V--AINYRTEDFAEEVKEAT-G-GR  207 (323)
T ss_pred             CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHc-----CCC-E--EEeCCchhHHHHHHHHh-C-CC
Confidence            578999999999999999999999999999998876654433 222     211 1  23444433333333322 2 24


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++++++|.
T Consensus       208 ~~d~vi~~~g~  218 (323)
T cd05276         208 GVDVILDMVGG  218 (323)
T ss_pred             CeEEEEECCch
Confidence            69999999883

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.01  E-value=0.0078  Score=50.99  Aligned_cols=79  Identities=15%  Similarity=0.184  Sum_probs=53.7

Q ss_pred             EEEecCCCchHHHHHHHHHHcC----CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           32 AIVTGASSGIGTETARVLALRG----VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G----~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +.|.|++|.+|..++..|+..|    .+|++.|+++++++.....++......  ....+-.++  .....++       
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~--~~~~i~~~~--d~~~~~~-------   69 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL--ADIKVSITD--DPYEAFK-------   69 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc--cCcEEEECC--chHHHhC-------
Confidence            4689998899999999999999    689999999988777777665432111  011111122  1222333       


Q ss_pred             CeeEEEEccCCCCC
Q 025275          108 PLNILINNAGIMAS  121 (255)
Q Consensus       108 ~id~lv~~ag~~~~  121 (255)
                      ..|++|..+|....
T Consensus        70 ~aDiVv~t~~~~~~   83 (263)
T cd00650          70 DADVVIITAGVGRK   83 (263)
T ss_pred             CCCEEEECCCCCCC
Confidence            58999999997644

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.00  E-value=0.0033  Score=53.85  Aligned_cols=41  Identities=24%  Similarity=0.269  Sum_probs=36.7

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      ...+++||.++|.|+++-+|+.++..|.++|++|.++.|..
T Consensus       153 ~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t  193 (283)
T PRK14192        153 YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT  193 (283)
T ss_pred             cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            35678999999999999999999999999999999988743

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.99  E-value=0.0072  Score=53.84  Aligned_cols=77  Identities=14%  Similarity=0.141  Sum_probs=54.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +.+++++|.|+ |.+|+..++.+...|++|++++|+.++++...+.+     +.   .+..+..+.+.+.+.+.      
T Consensus       165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~-----g~---~v~~~~~~~~~l~~~l~------  229 (370)
T TIGR00518       165 VEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF-----GG---RIHTRYSNAYEIEDAVK------  229 (370)
T ss_pred             CCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc-----Cc---eeEeccCCHHHHHHHHc------
Confidence            45677999987 78999999999999999999999876654433322     21   12345556665555544      


Q ss_pred             CCeeEEEEccCCC
Q 025275          107 RPLNILINNAGIM  119 (255)
Q Consensus       107 g~id~lv~~ag~~  119 (255)
                       ..|++|++++..
T Consensus       230 -~aDvVI~a~~~~  241 (370)
T TIGR00518       230 -RADLLIGAVLIP  241 (370)
T ss_pred             -cCCEEEEccccC
Confidence             479999998653

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14968 putative methyltransferase; Provisional

Probab=96.98  E-value=0.02  Score=45.49  Aligned_cols=79  Identities=20%  Similarity=0.195  Sum_probs=54.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCc-eEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAK-VDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ..++++|-.|++.|.   ++..|++.+.+|+.++++++......+.+.......+ +.++.+|+.+.     +    .+ 
T Consensus        22 ~~~~~vLd~G~G~G~---~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~----~~-   88 (188)
T PRK14968         22 KKGDRVLEVGTGSGI---VAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-----F----RG-   88 (188)
T ss_pred             cCCCEEEEEccccCH---HHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-----c----cc-
Confidence            357789988888775   6666777788999999998777666666654321112 78888887542     1    11 


Q ss_pred             CCCeeEEEEccCCC
Q 025275          106 GRPLNILINNAGIM  119 (255)
Q Consensus       106 ~g~id~lv~~ag~~  119 (255)
                       ..+|.++.|..+.
T Consensus        89 -~~~d~vi~n~p~~  101 (188)
T PRK14968         89 -DKFDVILFNPPYL  101 (188)
T ss_pred             -cCceEEEECCCcC
Confidence             2689999887654

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=96.97  E-value=0.0044  Score=53.84  Aligned_cols=79  Identities=16%  Similarity=0.270  Sum_probs=52.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++||+|++|++|..+++.+...|++|+.+.++.++.+.+ +++     +.. .++  |..+.+...+.++....  +
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~-~~l-----Ga~-~vi--~~~~~~~~~~~~~~~~~--~  206 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL-KKL-----GFD-VAF--NYKTVKSLEETLKKASP--D  206 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCC-EEE--eccccccHHHHHHHhCC--C
Confidence            578999999999999999888888899999998876653333 222     322 122  33332234444444422  3


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|+++.+.|
T Consensus       207 gvdvv~d~~G  216 (325)
T TIGR02825       207 GYDCYFDNVG  216 (325)
T ss_pred             CeEEEEECCC
Confidence            6999999887

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.97  E-value=0.0091  Score=49.92  Aligned_cols=83  Identities=13%  Similarity=0.301  Sum_probs=58.8

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++++|+|.|+ ||+|..+++.|++.|. ++.++|.+                   ..+.+.+.+.+.+..|+.++..+
T Consensus        21 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        21 ALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            467788998876 5999999999999997 68888764                   23445566677777777777776


Q ss_pred             EeCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           86 ELDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        86 ~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ...++. +.+.++++       ..|++|.+..
T Consensus       100 ~~~i~~-~~~~~~~~-------~~DlVvd~~D  123 (240)
T TIGR02355       100 NAKLDD-AELAALIA-------EHDIVVDCTD  123 (240)
T ss_pred             eccCCH-HHHHHHhh-------cCCEEEEcCC
Confidence            655543 34444444       4688887764

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.96  E-value=0.0056  Score=53.99  Aligned_cols=80  Identities=16%  Similarity=0.282  Sum_probs=53.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +|+.+||.||+||+|.+.++-....|+..+++.++.++ .+..+++     +..   .-.|..+++-++.+-+..   .+
T Consensus       157 ~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~-~~l~k~l-----GAd---~vvdy~~~~~~e~~kk~~---~~  224 (347)
T KOG1198|consen  157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEK-LELVKKL-----GAD---EVVDYKDENVVELIKKYT---GK  224 (347)
T ss_pred             CCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccch-HHHHHHc-----CCc---EeecCCCHHHHHHHHhhc---CC
Confidence            57899999999999988888777788556666666655 3333333     211   224777754444333322   46


Q ss_pred             CeeEEEEccCCC
Q 025275          108 PLNILINNAGIM  119 (255)
Q Consensus       108 ~id~lv~~ag~~  119 (255)
                      ++|+|+-|.|..
T Consensus       225 ~~DvVlD~vg~~  236 (347)
T KOG1198|consen  225 GVDVVLDCVGGS  236 (347)
T ss_pred             CccEEEECCCCC
Confidence            799999999864

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.96  E-value=0.0036  Score=53.80  Aligned_cols=42  Identities=24%  Similarity=0.295  Sum_probs=37.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAG   66 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~   66 (255)
                      ..+++|++++|.|. |++|+++++.|...|++|++.+|+.+..
T Consensus       146 ~~~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~  187 (287)
T TIGR02853       146 DFTIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADL  187 (287)
T ss_pred             CCCCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            35789999999999 6699999999999999999999987643

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=96.95  E-value=0.0039  Score=54.62  Aligned_cols=79  Identities=16%  Similarity=0.323  Sum_probs=49.6

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      |.++||+||+||+|...++-....|+.++++..+.++.+ ..+++     +.. +.  .|..+++ +.+.++++... .+
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~l-----GAd-~v--i~y~~~~-~~~~v~~~t~g-~g  211 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKEL-----GAD-HV--INYREED-FVEQVRELTGG-KG  211 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhc-----CCC-EE--EcCCccc-HHHHHHHHcCC-CC
Confidence            899999999999998887777778877666666655544 33333     221 11  2344433 33333333221 25


Q ss_pred             eeEEEEccCC
Q 025275          109 LNILINNAGI  118 (255)
Q Consensus       109 id~lv~~ag~  118 (255)
                      +|+++...|.
T Consensus       212 vDvv~D~vG~  221 (326)
T COG0604         212 VDVVLDTVGG  221 (326)
T ss_pred             ceEEEECCCH
Confidence            9999988873

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.88  E-value=0.0068  Score=52.56  Aligned_cols=78  Identities=22%  Similarity=0.351  Sum_probs=53.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEEEeCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAMELDVS   90 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   90 (255)
                      +|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+...+.+++..+..++..+..+++
T Consensus         1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~   79 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence            3788886 8999999999999997 68888854                   2345555666666666677777777777


Q ss_pred             CHHHHHHHHHHHhcCCCCeeEEEEcc
Q 025275           91 SLASVRKFASEYNSQGRPLNILINNA  116 (255)
Q Consensus        91 ~~~si~~~~~~~~~~~g~id~lv~~a  116 (255)
                      +......+++       .+|+||.+.
T Consensus        80 ~~~~~~~f~~-------~~DvVv~a~   98 (312)
T cd01489          80 DPDFNVEFFK-------QFDLVFNAL   98 (312)
T ss_pred             CccchHHHHh-------cCCEEEECC
Confidence            5322223333       467777665

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.86  E-value=0.0029  Score=49.87  Aligned_cols=39  Identities=28%  Similarity=0.342  Sum_probs=35.4

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      .++.||+++|.|++.-+|..+++.|.++|++|.++.|+.
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~   78 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT   78 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence            468999999999977789999999999999999999874

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=96.85  E-value=0.0053  Score=53.11  Aligned_cols=75  Identities=24%  Similarity=0.263  Sum_probs=50.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+.+++|+|+++++|+++++.+...|.+|+.+.++.+..+..    ...  +.. .++  |..   .+...+.+    ..
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~----~~~--~~~-~~~--~~~---~~~~~~~~----~~  225 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL----KEL--GAD-YVI--DGS---KFSEDVKK----LG  225 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH----HHc--CCc-EEE--ecH---HHHHHHHh----cc
Confidence            478999999999999999999999999999998876543332    221  211 122  221   12222322    23


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      .+|++++++|.
T Consensus       226 ~~d~v~~~~g~  236 (332)
T cd08259         226 GADVVIELVGS  236 (332)
T ss_pred             CCCEEEECCCh
Confidence            69999999873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.85  E-value=0.012  Score=52.50  Aligned_cols=64  Identities=20%  Similarity=0.294  Sum_probs=49.7

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++.+|+|.|+ ||+|..++..|+..|. ++.++|.+                   ..+.+.+.+.+.+..|+.++..+
T Consensus        38 ~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~  116 (370)
T PRK05600         38 RLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL  116 (370)
T ss_pred             HhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence            367888999987 5999999999999997 79999875                   33556667777777776677777


Q ss_pred             EeCCC
Q 025275           86 ELDVS   90 (255)
Q Consensus        86 ~~Dl~   90 (255)
                      ...++
T Consensus       117 ~~~i~  121 (370)
T PRK05600        117 RERLT  121 (370)
T ss_pred             eeecC
Confidence            66665

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=96.81  E-value=0.014  Score=50.45  Aligned_cols=79  Identities=16%  Similarity=0.266  Sum_probs=51.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+.+++|.|+++++|.++++.+.+.|++|+.+.++.++.+...+.+     +. -.++  |..+.+..+.+. +...  +
T Consensus       145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~-----g~-~~~~--~~~~~~~~~~v~-~~~~--~  213 (329)
T cd05288         145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL-----GF-DAAI--NYKTPDLAEALK-EAAP--D  213 (329)
T ss_pred             CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc-----CC-ceEE--ecCChhHHHHHH-Hhcc--C
Confidence            5789999999999999999999999999999988766543332212     21 1222  233333223222 2221  4


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .+|+++.+.|
T Consensus       214 ~~d~vi~~~g  223 (329)
T cd05288         214 GIDVYFDNVG  223 (329)
T ss_pred             CceEEEEcch
Confidence            6999999887

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.80  E-value=0.1  Score=43.73  Aligned_cols=159  Identities=16%  Similarity=0.250  Sum_probs=92.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++||--|.||+|..+++.|...|..+|.+..+.++....++       ++.-+.|  |-+.++-++ .+.++.+ ..
T Consensus       146 pGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~ake-------nG~~h~I--~y~~eD~v~-~V~kiTn-gK  214 (336)
T KOG1197|consen  146 PGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKE-------NGAEHPI--DYSTEDYVD-EVKKITN-GK  214 (336)
T ss_pred             CCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHh-------cCCccee--eccchhHHH-HHHhccC-CC
Confidence            68999999999999999999999999999888777665433332       2222333  555554333 3333322 23


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+++-..|.         +++...               +..+       ++.|.+|..+...+...+.   ++..++
T Consensus       215 GVd~vyDsvG~---------dt~~~s---------------l~~L-------k~~G~mVSfG~asgl~~p~---~l~~ls  260 (336)
T KOG1197|consen  215 GVDAVYDSVGK---------DTFAKS---------------LAAL-------KPMGKMVSFGNASGLIDPI---PLNQLS  260 (336)
T ss_pred             Cceeeeccccc---------hhhHHH---------------HHHh-------ccCceEEEeccccCCCCCe---ehhhcC
Confidence            68888866663         222211               1122       3478888887766655322   222221


Q ss_pred             ccc---CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCC
Q 025275          188 DES---AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPG  231 (255)
Q Consensus       188 ~~~---~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG  231 (255)
                      ...   ..+....|-....-+.+.+-.+=....+..++|+|+.+.|-
T Consensus       261 ~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~I~~~ypl  307 (336)
T KOG1197|consen  261 PKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIHIDHVYPL  307 (336)
T ss_pred             hhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCccceeeeeecch
Confidence            111   11234456666655555444333344445567999999885

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.80  E-value=0.0062  Score=55.27  Aligned_cols=47  Identities=30%  Similarity=0.489  Sum_probs=39.7

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAI   73 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~   73 (255)
                      ++.+++++|.|+ |.+|..+++.|...|+ +|++++|+.++.....+++
T Consensus       179 ~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~  226 (423)
T PRK00045        179 DLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF  226 (423)
T ss_pred             CccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc
Confidence            478899999987 9999999999999997 7999999987766555543

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.78  E-value=0.011  Score=52.93  Aligned_cols=48  Identities=23%  Similarity=0.371  Sum_probs=42.3

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIV   74 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~   74 (255)
                      +++++++||.|+ |-+|.-+|++|+++|. +|+++.|+.++..++.+++.
T Consensus       175 ~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~  223 (414)
T COG0373         175 SLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG  223 (414)
T ss_pred             ccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC
Confidence            389999999997 5789999999999995 79999999999888888773

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.78  E-value=0.078  Score=46.27  Aligned_cols=123  Identities=11%  Similarity=0.090  Sum_probs=72.0

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+.+++.|.|+ |.+|..++..++..| +++++.+++.+.++.....+.....  +... .+.. -+|.   + .++   
T Consensus         3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~-~i~~-~~d~---~-~l~---   72 (319)
T PTZ00117          3 VKRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNI-NILG-TNNY---E-DIK---   72 (319)
T ss_pred             CCCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCe-EEEe-CCCH---H-HhC---
Confidence            35678999997 889999999999999 6899999988754322211111100  1111 1111 1222   2 222   


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                          ..|++|.++|....+. .+   -.+.+..|.    -+.+.+.+.+.+.    ...+.+|++|......
T Consensus        73 ----~ADiVVitag~~~~~g-~~---r~dll~~n~----~i~~~i~~~i~~~----~p~a~vivvsNP~di~  128 (319)
T PTZ00117         73 ----DSDVVVITAGVQRKEE-MT---REDLLTING----KIMKSVAESVKKY----CPNAFVICVTNPLDCM  128 (319)
T ss_pred             ----CCCEEEECCCCCCCCC-CC---HHHHHHHHH----HHHHHHHHHHHHH----CCCeEEEEecChHHHH
Confidence                5799999999754332 22   233455555    3555566666553    2355688887765443

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.77  E-value=0.02  Score=53.01  Aligned_cols=112  Identities=21%  Similarity=0.248  Sum_probs=68.3

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCH-------------H
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL-------------A   93 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-------------~   93 (255)
                      ..+.+|+|+|+ |.+|+..+..+...|++|++++++.++++... ++     +..  ++..|..+.             +
T Consensus       163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae-sl-----GA~--~v~i~~~e~~~~~~gya~~~s~~  233 (509)
T PRK09424        163 VPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE-SM-----GAE--FLELDFEEEGGSGDGYAKVMSEE  233 (509)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCe--EEEeccccccccccchhhhcchh
Confidence            35789999987 58999999999999999999999887644332 22     333  222333221             1


Q ss_pred             HHHHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCC
Q 025275           94 SVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSE  171 (255)
Q Consensus        94 si~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~  171 (255)
                      ..+...+.+.+..+..|++|.++|......                 +..+++..+..|+       ++|.||.++..
T Consensus       234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~a-----------------P~lit~~~v~~mk-------pGgvIVdvg~~  287 (509)
T PRK09424        234 FIKAEMALFAEQAKEVDIIITTALIPGKPA-----------------PKLITAEMVASMK-------PGSVIVDLAAE  287 (509)
T ss_pred             HHHHHHHHHHhccCCCCEEEECCCCCcccC-----------------cchHHHHHHHhcC-------CCCEEEEEccC
Confidence            122222222233356999999999754211                 1112234555554       47888888764

>PRK04148 hypothetical protein; Provisional

Probab=96.76  E-value=0.012  Score=44.39  Aligned_cols=55  Identities=18%  Similarity=0.136  Sum_probs=43.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL   92 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   92 (255)
                      +++++++.|.+  .|.++|..|.+.|++|+.+|.+++..+...+.        .+.++..|+.++
T Consensus        16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p   70 (134)
T PRK04148         16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNP   70 (134)
T ss_pred             cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCC
Confidence            45789999998  77889999999999999999998754433322        357888888874

>PRK08328 hypothetical protein; Provisional

Probab=96.76  E-value=0.017  Score=47.98  Aligned_cols=83  Identities=13%  Similarity=0.217  Sum_probs=52.7

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccch--------------------HHHHHHHHHhhCCCCceEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAA--------------------GKDVREAIVKEIPSAKVDA   84 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~--------------------~~~~~~~~~~~~~~~~~~~   84 (255)
                      .+++++|+|.|++ |+|.++++.|++.|. ++.++|.+.-+                    .....+.+.+..|+.++..
T Consensus        24 ~L~~~~VlIiG~G-GlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~  102 (231)
T PRK08328         24 KLKKAKVAVVGVG-GLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIET  102 (231)
T ss_pred             HHhCCcEEEECCC-HHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEE
Confidence            3577889999875 999999999999997 68888854211                    1122233444455556666


Q ss_pred             EEeCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           85 MELDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        85 ~~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      +...++ ++.++.+++       ..|++|.+..
T Consensus       103 ~~~~~~-~~~~~~~l~-------~~D~Vid~~d  127 (231)
T PRK08328        103 FVGRLS-EENIDEVLK-------GVDVIVDCLD  127 (231)
T ss_pred             EeccCC-HHHHHHHHh-------cCCEEEECCC
Confidence            555553 334444444       3577776654

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.76  E-value=0.0069  Score=51.77  Aligned_cols=51  Identities=22%  Similarity=0.323  Sum_probs=44.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKE   76 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~   76 (255)
                      .+.+++.++|.|+ ||-+++++..|++.|+ ++.++.|+.++.+++.+.+...
T Consensus       122 ~~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~  173 (283)
T COG0169         122 VDVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGEL  173 (283)
T ss_pred             cccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc
Confidence            4567899999987 5789999999999996 7999999999999998888765

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.73  E-value=0.011  Score=53.44  Aligned_cols=46  Identities=24%  Similarity=0.393  Sum_probs=39.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREA   72 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~   72 (255)
                      .+.+++++|.|+ |.+|..+++.|.+.| .+|++++|+.++..+..++
T Consensus       177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~  223 (417)
T TIGR01035       177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE  223 (417)
T ss_pred             CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence            478899999997 999999999999999 5799999998766555544

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK07877 hypothetical protein; Provisional

Probab=96.72  E-value=0.0094  Score=57.35  Aligned_cols=81  Identities=20%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEec------------------cchHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRN------------------MAAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~------------------~~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++++|+|.|+ | +|..++..|+..|.  +++++|.+                  ..+.....+.+.+..|..++..+.
T Consensus       105 L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~  182 (722)
T PRK07877        105 LGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT  182 (722)
T ss_pred             HhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence            68899999999 4 99999999999993  79888864                  335566777788888888899999


Q ss_pred             eCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           87 LDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        87 ~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ..++ +++++.+++       .+|+||-|..
T Consensus       183 ~~i~-~~n~~~~l~-------~~DlVvD~~D  205 (722)
T PRK07877        183 DGLT-EDNVDAFLD-------GLDVVVEECD  205 (722)
T ss_pred             ccCC-HHHHHHHhc-------CCCEEEECCC
Confidence            8888 566777766       4788887765

>PRK14851 hypothetical protein; Provisional

Probab=96.68  E-value=0.014  Score=55.99  Aligned_cols=83  Identities=10%  Similarity=0.193  Sum_probs=63.6

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++++|+|.| -||+|..++..|+..|. ++.++|.+                   ..+.+...+.+.+..|..++..+
T Consensus        40 kL~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~  118 (679)
T PRK14851         40 RLAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF  118 (679)
T ss_pred             HHhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence            36789999998 56999999999999997 68888853                   23555667777777788888888


Q ss_pred             EeCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           86 ELDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        86 ~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ...++. +.+..+++       .+|+||.+..
T Consensus       119 ~~~i~~-~n~~~~l~-------~~DvVid~~D  142 (679)
T PRK14851        119 PAGINA-DNMDAFLD-------GVDVVLDGLD  142 (679)
T ss_pred             ecCCCh-HHHHHHHh-------CCCEEEECCC
Confidence            888874 45666665       4788886653

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.66  E-value=0.11  Score=45.23  Aligned_cols=120  Identities=14%  Similarity=0.071  Sum_probs=72.7

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .++.|+|+ |.+|.++|..|+..|.  ++++.+.+.+.++.....+....+-....-+.. -.|++.    +       .
T Consensus         4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~-~~dy~~----~-------~   70 (312)
T cd05293           4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEA-DKDYSV----T-------A   70 (312)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEE-CCCHHH----h-------C
Confidence            47899996 9999999999999885  699999988766555555544321111011111 123221    2       2


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      ..|++|.+||....+. ++-   .+.++.|.    -+++.+.+.+.+.    ...+.+|++|.....
T Consensus        71 ~adivvitaG~~~k~g-~~R---~dll~~N~----~i~~~~~~~i~~~----~p~~~vivvsNP~d~  125 (312)
T cd05293          71 NSKVVIVTAGARQNEG-ESR---LDLVQRNV----DIFKGIIPKLVKY----SPNAILLVVSNPVDI  125 (312)
T ss_pred             CCCEEEECCCCCCCCC-CCH---HHHHHHHH----HHHHHHHHHHHHh----CCCcEEEEccChHHH
Confidence            5799999999865432 222   23344443    3455555555543    345778888876543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.66  E-value=0.0039  Score=57.40  Aligned_cols=47  Identities=21%  Similarity=0.275  Sum_probs=40.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA   72 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~   72 (255)
                      .++++++++|+|+ ||+|++++..|++.|++|++.+|+.++.++..++
T Consensus       328 ~~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~  374 (477)
T PRK09310        328 IPLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALASR  374 (477)
T ss_pred             CCcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            4578899999996 7999999999999999999999987766655544

>PLN02602 lactate dehydrogenase

Probab=96.64  E-value=0.14  Score=45.19  Aligned_cols=120  Identities=14%  Similarity=0.114  Sum_probs=74.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCC-CceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPS-AKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++.|+|+ |.+|.++|..|+..|.  ++++.+.+++.++.....+....+- ... -+.. -.+++       .+    
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~-~i~~-~~dy~-------~~----  103 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRT-KILA-STDYA-------VT----  103 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCC-EEEe-CCCHH-------Hh----
Confidence            68999996 9999999999998885  6999999987766555555443211 112 2221 12221       11    


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      ...|++|.+||....+. .+-   .+.+..|    .-+++.+.+.+.+.    ...+.+|++|...-+.
T Consensus       104 ~daDiVVitAG~~~k~g-~tR---~dll~~N----~~I~~~i~~~I~~~----~p~~ivivvtNPvdv~  160 (350)
T PLN02602        104 AGSDLCIVTAGARQIPG-ESR---LNLLQRN----VALFRKIIPELAKY----SPDTILLIVSNPVDVL  160 (350)
T ss_pred             CCCCEEEECCCCCCCcC-CCH---HHHHHHH----HHHHHHHHHHHHHH----CCCeEEEEecCchHHH
Confidence            25799999999865432 222   2333333    34555555666553    3467889888866443

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.63  E-value=0.018  Score=47.95  Aligned_cols=78  Identities=23%  Similarity=0.353  Sum_probs=53.2

Q ss_pred             EEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEEEeCCCC
Q 025275           32 AIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAMELDVSS   91 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   91 (255)
                      ++|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+...+.+++..|+.++..+..++++
T Consensus         2 VlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~   80 (234)
T cd01484           2 VLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP   80 (234)
T ss_pred             EEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            66776 67999999999999997 68888864                   22444555666666667777777777765


Q ss_pred             HHHH-HHHHHHHhcCCCCeeEEEEccC
Q 025275           92 LASV-RKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        92 ~~si-~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ++.. ..+++       .+|++|.+..
T Consensus        81 ~~~~~~~f~~-------~~DvVi~a~D  100 (234)
T cd01484          81 EQDFNDTFFE-------QFHIIVNALD  100 (234)
T ss_pred             hhhchHHHHh-------CCCEEEECCC
Confidence            4332 22232       5788887653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=96.62  E-value=0.0085  Score=51.87  Aligned_cols=78  Identities=15%  Similarity=0.277  Sum_probs=51.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++||+||+|++|..+++.+...|++|+.+.++.++.+.+. ++     +.. .++  |-.+++..+ .+.+...  +
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~-~~-----Ga~-~vi--~~~~~~~~~-~v~~~~~--~  210 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLK-EL-----GFD-AVF--NYKTVSLEE-ALKEAAP--D  210 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc-----CCC-EEE--eCCCccHHH-HHHHHCC--C
Confidence            5789999999999999988888889999999988776543332 22     321 222  333332222 2333322  4


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|+++.+.|
T Consensus       211 gvd~vld~~g  220 (329)
T cd08294         211 GIDCYFDNVG  220 (329)
T ss_pred             CcEEEEECCC
Confidence            6999998877

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=96.61  E-value=0.0035  Score=42.03  Aligned_cols=34  Identities=29%  Similarity=0.368  Sum_probs=23.2

Q ss_pred             CC-cEEEEecCCCchHHH--HHHHHHHcCCeEEEEEec
Q 025275           28 TG-LTAIVTGASSGIGTE--TARVLALRGVHVIMAVRN   62 (255)
Q Consensus        28 ~~-k~vlItG~s~giG~~--ia~~L~~~G~~Vi~~~r~   62 (255)
                      .| |+|||+|+|+|.|++  |+..| ..|++.+-++..
T Consensus        37 ~GpK~VLViGaStGyGLAsRIa~aF-g~gA~TiGV~fE   73 (78)
T PF12242_consen   37 NGPKKVLVIGASTGYGLASRIAAAF-GAGADTIGVSFE   73 (78)
T ss_dssp             TS-SEEEEES-SSHHHHHHHHHHHH-CC--EEEEEE--
T ss_pred             CCCceEEEEecCCcccHHHHHHHHh-cCCCCEEEEeec
Confidence            44 899999999999999  66666 567777666554

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=96.60  E-value=0.013  Score=53.70  Aligned_cols=77  Identities=18%  Similarity=0.112  Sum_probs=53.7

Q ss_pred             CCCCcEEEEecC----------------CCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCC
Q 025275           26 DGTGLTAIVTGA----------------SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV   89 (255)
Q Consensus        26 ~~~~k~vlItG~----------------s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl   89 (255)
                      +++||++|||+|                ||-.|.+||++++.+|++|.++.-... +         .. ...+..+.  +
T Consensus       253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~-~---------~~-p~~v~~i~--V  319 (475)
T PRK13982        253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD-L---------AD-PQGVKVIH--V  319 (475)
T ss_pred             ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC-C---------CC-CCCceEEE--e
Confidence            489999999997                578999999999999999998863321 1         01 22345553  4


Q ss_pred             CCHHHHHHHHHHHhcCCCCeeEEEEccCCC
Q 025275           90 SSLASVRKFASEYNSQGRPLNILINNAGIM  119 (255)
Q Consensus        90 ~~~~si~~~~~~~~~~~g~id~lv~~ag~~  119 (255)
                      ...+++.+.+.+.   +. .|++|++|++.
T Consensus       320 ~ta~eM~~av~~~---~~-~Di~I~aAAVa  345 (475)
T PRK13982        320 ESARQMLAAVEAA---LP-ADIAIFAAAVA  345 (475)
T ss_pred             cCHHHHHHHHHhh---CC-CCEEEEecccc
Confidence            4444454444433   33 69999999976

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.59  E-value=0.092  Score=45.89  Aligned_cols=125  Identities=12%  Similarity=0.139  Sum_probs=72.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHH-HHHHHHhh-CCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKD-VREAIVKE-IPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~-~~~~~~~~-~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +.+++.|.| +|.+|.+++..++..|. +|++.+.+++.+.. ..+..... ..+....+..  .+|.+    .++    
T Consensus         5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~--~~d~~----~l~----   73 (321)
T PTZ00082          5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG--TNNYE----DIA----   73 (321)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE--CCCHH----HhC----
Confidence            447899999 48899999999999995 89999999875432 22221111 0011111111  12321    122    


Q ss_pred             CCCCeeEEEEccCCCCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          105 QGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~--~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                         ..|++|.++|....+..  .+.+ -.+.+..|+    -+.+.+.+.+.+.    ...+.+|++|......
T Consensus        74 ---~aDiVI~tag~~~~~~~~~~~~~-r~~~l~~n~----~i~~~i~~~i~~~----~p~a~~iv~sNP~di~  134 (321)
T PTZ00082         74 ---GSDVVIVTAGLTKRPGKSDKEWN-RDDLLPLNA----KIMDEVAEGIKKY----CPNAFVIVITNPLDVM  134 (321)
T ss_pred             ---CCCEEEECCCCCCCCCCCcCCCC-HHHHHHHHH----HHHHHHHHHHHHH----CCCeEEEEecCcHHHH
Confidence               57999999998654321  1111 133344453    3566666666653    2355788888766543

>PLN00203 glutamyl-tRNA reductase

Probab=96.59  E-value=0.015  Score=53.98  Aligned_cols=79  Identities=13%  Similarity=0.209  Sum_probs=56.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++.+++++|.|+ |.+|..+++.|...|+ +|++++|+.++.+.+.+++.    +..+.+.  ++   ++....+.    
T Consensus       263 ~l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~----g~~i~~~--~~---~dl~~al~----  328 (519)
T PLN00203        263 SHASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP----DVEIIYK--PL---DEMLACAA----  328 (519)
T ss_pred             CCCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC----CCceEee--cH---hhHHHHHh----
Confidence            478899999999 9999999999999997 69999999887766655541    2122221  22   23333333    


Q ss_pred             CCCCeeEEEEccCCCCC
Q 025275          105 QGRPLNILINNAGIMAS  121 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~  121 (255)
                         ..|+||.+.+...+
T Consensus       329 ---~aDVVIsAT~s~~p  342 (519)
T PLN00203        329 ---EADVVFTSTSSETP  342 (519)
T ss_pred             ---cCCEEEEccCCCCC
Confidence               47999998876544

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.56  E-value=0.0086  Score=54.63  Aligned_cols=60  Identities=18%  Similarity=0.160  Sum_probs=44.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHH
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      .++|.|+ |.+|.++++.|.++|..|++++++.+......+.       ..+.++..|.++.+.++.+
T Consensus         2 ~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~   61 (453)
T PRK09496          2 KIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREA   61 (453)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHc
Confidence            5788887 9999999999999999999999988765443321       1355666777765544433

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=96.56  E-value=0.019  Score=49.16  Aligned_cols=79  Identities=23%  Similarity=0.391  Sum_probs=52.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+.+++|+|+++++|.++++.+...|++|+++.++.+..+.. .++     +... .  .+..+.+....+.... . ..
T Consensus       139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~~-~--~~~~~~~~~~~~~~~~-~-~~  207 (325)
T TIGR02824       139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC-EAL-----GADI-A--INYREEDFVEVVKAET-G-GK  207 (325)
T ss_pred             CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCcE-E--EecCchhHHHHHHHHc-C-CC
Confidence            578999999999999999999999999999998886654322 222     2111 1  2333333333333222 1 13


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++++++|
T Consensus       208 ~~d~~i~~~~  217 (325)
T TIGR02824       208 GVDVILDIVG  217 (325)
T ss_pred             CeEEEEECCc
Confidence            5999999987

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.55  E-value=0.012  Score=51.20  Aligned_cols=72  Identities=22%  Similarity=0.428  Sum_probs=52.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +.+++++|.|+ |.+|..+++.|.+.|. +|++++|+.++..+..+++     +.  ..+     +.+++...+.     
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-----g~--~~~-----~~~~~~~~l~-----  237 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-----GG--NAV-----PLDELLELLN-----  237 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-----CC--eEE-----eHHHHHHHHh-----
Confidence            67899999987 9999999999998775 6999999987766666554     22  122     2233333333     


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                        ..|++|.+.+.
T Consensus       238 --~aDvVi~at~~  248 (311)
T cd05213         238 --EADVVISATGA  248 (311)
T ss_pred             --cCCEEEECCCC
Confidence              46999999885

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK07411 hypothetical protein; Validated

Probab=96.53  E-value=0.021  Score=51.32  Aligned_cols=65  Identities=20%  Similarity=0.270  Sum_probs=51.3

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++.+|+|.|++ |+|..+++.|+..|. ++.++|.+                   ..+.....+.+++..|..++..+
T Consensus        35 ~L~~~~VlivG~G-GlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         35 RLKAASVLCIGTG-GLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHhcCcEEEECCC-HHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            4678899999875 899999999999997 68888864                   33556677778888777778877


Q ss_pred             EeCCCC
Q 025275           86 ELDVSS   91 (255)
Q Consensus        86 ~~Dl~~   91 (255)
                      ...++.
T Consensus       114 ~~~~~~  119 (390)
T PRK07411        114 ETRLSS  119 (390)
T ss_pred             ecccCH
Confidence            776665

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=96.53  E-value=0.06  Score=48.94  Aligned_cols=117  Identities=14%  Similarity=0.104  Sum_probs=74.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHc-------CC--eEEEEEeccchHHHHHHHHHhhC-CC-CceEEEEeCCCCHHHHHHHH
Q 025275           31 TAIVTGASSGIGTETARVLALR-------GV--HVIMAVRNMAAGKDVREAIVKEI-PS-AKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~-------G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~Dl~~~~si~~~~   99 (255)
                      ++.|+|++|.+|.++|..|+..       |.  ++++++++.+.++.....++... +- .++. +..  .+++    .+
T Consensus       102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~-i~~--~~ye----~~  174 (444)
T PLN00112        102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVS-IGI--DPYE----VF  174 (444)
T ss_pred             EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceE-Eec--CCHH----Hh
Confidence            6889999999999999999988       64  79999999998877666665432 11 1111 111  2222    12


Q ss_pred             HHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          100 SEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                             ...|++|..||....+- .+   -.+.++.|+.-.    +...+.+.+.   ....+.||.+|...
T Consensus       175 -------kdaDiVVitAG~prkpG-~t---R~dLl~~N~~I~----k~i~~~I~~~---a~p~~ivIVVsNPv  229 (444)
T PLN00112        175 -------QDAEWALLIGAKPRGPG-ME---RADLLDINGQIF----AEQGKALNEV---ASRNVKVIVVGNPC  229 (444)
T ss_pred             -------CcCCEEEECCCCCCCCC-CC---HHHHHHHHHHHH----HHHHHHHHHh---cCCCeEEEEcCCcH
Confidence                   25899999999865432 22   234455555444    4444444430   03467888888764

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=96.52  E-value=0.035  Score=48.20  Aligned_cols=117  Identities=15%  Similarity=0.131  Sum_probs=67.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++.|+|++|.+|.++|..|+..|.  ++++.+.+  .++.....+.....  ......+. .+ +++...       +..
T Consensus         2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~--~~~i~~~~-~~-~~~y~~-------~~d   68 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINT--PAKVTGYL-GP-EELKKA-------LKG   68 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCC--cceEEEec-CC-CchHHh-------cCC
Confidence            688999999999999999998884  79999987  22222222222110  11111110 11 111111       236


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      .|++|.+||....+- .+   -.+.++.|..-.-.+.+.+.++        ...+.+|++|...
T Consensus        69 aDivvitaG~~~k~g-~t---R~dll~~N~~i~~~i~~~i~~~--------~p~a~vivvtNPv  120 (310)
T cd01337          69 ADVVVIPAGVPRKPG-MT---RDDLFNINAGIVRDLATAVAKA--------CPKALILIISNPV  120 (310)
T ss_pred             CCEEEEeCCCCCCCC-CC---HHHHHHHHHHHHHHHHHHHHHh--------CCCeEEEEccCch
Confidence            899999999865432 22   3345666655444444444433        2357888888876

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.51  E-value=0.021  Score=52.71  Aligned_cols=84  Identities=18%  Similarity=0.138  Sum_probs=56.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-------------HH
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-------------LA   93 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-------------~~   93 (255)
                      ..+.+++|.|+ |.+|...+..+...|+.|++.+++.++++..    +..  +  ..++..|..+             .+
T Consensus       162 vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a----~~l--G--a~~v~v~~~e~g~~~~gYa~~~s~~  232 (511)
T TIGR00561       162 VPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQV----QSM--G--AEFLELDFKEEGGSGDGYAKVMSEE  232 (511)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHc--C--CeEEeccccccccccccceeecCHH
Confidence            34578999996 8999999999999999999999887753322    222  2  2344444321             23


Q ss_pred             HHHHHHHHHhcCCCCeeEEEEccCCC
Q 025275           94 SVRKFASEYNSQGRPLNILINNAGIM  119 (255)
Q Consensus        94 si~~~~~~~~~~~g~id~lv~~ag~~  119 (255)
                      ..+...+.+.+.....|++|+++-+.
T Consensus       233 ~~~~~~~~~~e~~~~~DIVI~Talip  258 (511)
T TIGR00561       233 FIAAEMELFAAQAKEVDIIITTALIP  258 (511)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcccC
Confidence            34444444455556799999999443

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.50  E-value=0.0096  Score=45.48  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=38.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA   65 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~   65 (255)
                      ..+++||.++|.|.+.-+|+.++..|.++|++|.++.++...
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~   64 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQ   64 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcC
Confidence            568999999999999999999999999999999999876543

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.49  E-value=0.013  Score=46.63  Aligned_cols=46  Identities=30%  Similarity=0.255  Sum_probs=37.9

Q ss_pred             ccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchH
Q 025275           20 EVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAG   66 (255)
Q Consensus        20 ~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~   66 (255)
                      ......++.|+++.|.|. |.||+++|+.|...|++|+..+|+....
T Consensus        27 ~~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~   72 (178)
T PF02826_consen   27 ERFPGRELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPE   72 (178)
T ss_dssp             TTTTBS-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHH
T ss_pred             cCCCccccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChh
Confidence            344566789999999976 8999999999999999999999997643

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.44  E-value=0.013  Score=58.34  Aligned_cols=77  Identities=26%  Similarity=0.355  Sum_probs=60.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcC-Ce-------------EEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRG-VH-------------VIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLA   93 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G-~~-------------Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~   93 (255)
                      +.|.++|.|+ |.+|+.+++.|++.. ++             |.+++++.+.++++.+..    +  ++..+++|++|.+
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----~--~~~~v~lDv~D~e  640 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----E--NAEAVQLDVSDSE  640 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc----C--CCceEEeecCCHH
Confidence            4678999997 999999999999864 23             888888876665554432    2  4678999999998


Q ss_pred             HHHHHHHHHhcCCCCeeEEEEccCC
Q 025275           94 SVRKFASEYNSQGRPLNILINNAGI  118 (255)
Q Consensus        94 si~~~~~~~~~~~g~id~lv~~ag~  118 (255)
                      ++.++++       .+|+||++...
T Consensus       641 ~L~~~v~-------~~DaVIsalP~  658 (1042)
T PLN02819        641 SLLKYVS-------QVDVVISLLPA  658 (1042)
T ss_pred             HHHHhhc-------CCCEEEECCCc
Confidence            8877766       48999999864

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.43  E-value=0.13  Score=44.53  Aligned_cols=121  Identities=15%  Similarity=0.200  Sum_probs=67.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +++.|.|+ |.+|..+|..++..|. +|++.+++++.++.....+..... .....-+.. -+|.   + .++       
T Consensus         3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~-~~d~---~-~~~-------   69 (307)
T PRK06223          3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG-TNDY---E-DIA-------   69 (307)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe-CCCH---H-HHC-------
Confidence            57899998 9999999999999875 899999988766443333322110 000001111 1221   1 122       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      ..|++|.++|.+.... .+-   .+.+.-|    .-+.+.+.+.+.+.    ...+.+|+++....+.
T Consensus        70 ~aDiVii~~~~p~~~~-~~r---~~~~~~n----~~i~~~i~~~i~~~----~~~~~viv~tNP~d~~  125 (307)
T PRK06223         70 GSDVVVITAGVPRKPG-MSR---DDLLGIN----AKIMKDVAEGIKKY----APDAIVIVVTNPVDAM  125 (307)
T ss_pred             CCCEEEECCCCCCCcC-CCH---HHHHHHH----HHHHHHHHHHHHHH----CCCeEEEEecCcHHHH
Confidence            5799999999754332 221   2223333    34444555555442    2245677776655433

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=96.43  E-value=0.066  Score=46.82  Aligned_cols=117  Identities=15%  Similarity=0.081  Sum_probs=67.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC-------eEEEEEecc--chHHHHHHHHHhhC-CC-CceEEEEeCCCCHHHHHHHH
Q 025275           31 TAIVTGASSGIGTETARVLALRGV-------HVIMAVRNM--AAGKDVREAIVKEI-PS-AKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~-~~-~~~~~~~~Dl~~~~si~~~~   99 (255)
                      ++.|+|++|.+|.+++..|+..|.       ++++.+.+.  +.++.....+.... +. ..+. +.  -.+       .
T Consensus         5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~--~~~-------~   74 (323)
T TIGR01759         5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVV-AT--TDP-------E   74 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcE-Ee--cCh-------H
Confidence            689999999999999999998884       799999865  33443333333221 11 0111 11  011       1


Q ss_pred             HHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          100 SEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      +.    ....|++|.+||....+. .+   -.+.++.|+.    +++.+.+.+.+..   .+.+.+|.+|...
T Consensus        75 ~~----~~daDvVVitAG~~~k~g-~t---R~dll~~Na~----i~~~i~~~i~~~~---~~~~iiivvsNPv  132 (323)
T TIGR01759        75 EA----FKDVDAALLVGAFPRKPG-ME---RADLLSKNGK----IFKEQGKALNKVA---KKDVKVLVVGNPA  132 (323)
T ss_pred             HH----hCCCCEEEEeCCCCCCCC-Cc---HHHHHHHHHH----HHHHHHHHHHhhC---CCCeEEEEeCCcH
Confidence            22    225799999999865432 22   2334555554    4444555554421   1256788887654

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=96.42  E-value=0.043  Score=47.70  Aligned_cols=118  Identities=14%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++.|+|++|.+|.++|..|+..+.  ++++.|+++ ...+..+ +...  ........+.-.+  +..       +.+..
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D-L~~~--~~~~~i~~~~~~~--~~~-------~~~~d   67 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD-LSHI--PTAASVKGFSGEE--GLE-------NALKG   67 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch-hhcC--CcCceEEEecCCC--chH-------HHcCC
Confidence            478999999999999999999885  699999876 2111111 1111  0011111101000  111       12236


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                      .|++|.+||....+. .+   -.+.+..|+.    +++...+.+.+.    ...+.+|++|...-
T Consensus        68 aDivvitaG~~~~~g-~~---R~dll~~N~~----I~~~i~~~i~~~----~p~~iiivvsNPvD  120 (312)
T TIGR01772        68 ADVVVIPAGVPRKPG-MT---RDDLFNVNAG----IVKDLVAAVAES----CPKAMILVITNPVN  120 (312)
T ss_pred             CCEEEEeCCCCCCCC-cc---HHHHHHHhHH----HHHHHHHHHHHh----CCCeEEEEecCchh
Confidence            899999999864432 22   2334555555    566666666553    34678888888763

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.41  E-value=0.13  Score=44.43  Aligned_cols=117  Identities=18%  Similarity=0.167  Sum_probs=71.6

Q ss_pred             EEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCCC-CceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           33 IVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPS-AKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        33 lItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      .|.|+ |++|.+++..|+..|  .++++.+++.+.++.....+...... ........  ++.+    .+       ...
T Consensus         2 ~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~~~----~l-------~~a   67 (300)
T cd00300           2 TIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GDYA----DA-------ADA   67 (300)
T ss_pred             EEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CCHH----Hh-------CCC
Confidence            57787 679999999999998  57999999988777666666544221 11121111  2211    22       258


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      |++|.++|.+..+. .+-   .+.+..|    .-+++.+.+.+++.    ...+.+|++|......
T Consensus        68 DiVIitag~p~~~~-~~R---~~l~~~n----~~i~~~~~~~i~~~----~p~~~viv~sNP~d~~  121 (300)
T cd00300          68 DIVVITAGAPRKPG-ETR---LDLINRN----APILRSVITNLKKY----GPDAIILVVSNPVDIL  121 (300)
T ss_pred             CEEEEcCCCCCCCC-CCH---HHHHHHH----HHHHHHHHHHHHHh----CCCeEEEEccChHHHH
Confidence            99999999764432 222   2233333    34555555555543    3467888888766444

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=96.40  E-value=0.046  Score=46.73  Aligned_cols=106  Identities=16%  Similarity=0.206  Sum_probs=67.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHH-cCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLAL-RGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.|++|++|+|.+| +++-++++ +|++|+.+.-+.++-+-+.+++     +.. ..  +|-.++ ++.+.+++..  -
T Consensus       150 ~GetvvVSaAaGaVG-svvgQiAKlkG~rVVGiaGg~eK~~~l~~~l-----GfD-~~--idyk~~-d~~~~L~~a~--P  217 (340)
T COG2130         150 AGETVVVSAAAGAVG-SVVGQIAKLKGCRVVGIAGGAEKCDFLTEEL-----GFD-AG--IDYKAE-DFAQALKEAC--P  217 (340)
T ss_pred             CCCEEEEEecccccc-hHHHHHHHhhCCeEEEecCCHHHHHHHHHhc-----CCc-ee--eecCcc-cHHHHHHHHC--C
Confidence            589999999999999 45555665 7899999988877754444433     211 11  244444 3444444331  2


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      .+||+.+-|.|.  +                      ++-++++.+..       .+||+.++-++.+..
T Consensus       218 ~GIDvyfeNVGg--~----------------------v~DAv~~~ln~-------~aRi~~CG~IS~YN~  256 (340)
T COG2130         218 KGIDVYFENVGG--E----------------------VLDAVLPLLNL-------FARIPVCGAISQYNA  256 (340)
T ss_pred             CCeEEEEEcCCc--h----------------------HHHHHHHhhcc-------ccceeeeeehhhcCC
Confidence            479999999984  1                      11124445533       679999988887653

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.39  E-value=0.02  Score=50.22  Aligned_cols=76  Identities=13%  Similarity=0.198  Sum_probs=49.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .+++++|+|+ |++|...++-+...|+ +|+++++++++++.. +++     +.. ..  .|..++ ++.+    +.+..
T Consensus       169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a-~~l-----Ga~-~v--i~~~~~-~~~~----~~~~~  233 (343)
T PRK09880        169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA-REM-----GAD-KL--VNPQND-DLDH----YKAEK  233 (343)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH-HHc-----CCc-EE--ecCCcc-cHHH----HhccC
Confidence            5889999986 8999999888888898 588888887665432 323     322 12  243332 2322    22223


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +.+|++|.++|.
T Consensus       234 g~~D~vid~~G~  245 (343)
T PRK09880        234 GYFDVSFEVSGH  245 (343)
T ss_pred             CCCCEEEECCCC
Confidence            569999999983

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=96.38  E-value=0.05  Score=47.10  Aligned_cols=120  Identities=16%  Similarity=0.223  Sum_probs=71.3

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++.|+|+ |+||.++|..|+.++.  ++++.+..++.++-....+..... ...-..+..| .+.       +.    +
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~y-------~~----~   67 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GDY-------ED----L   67 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CCh-------hh----h
Confidence            46889999 9999999999988874  799999996665544444432211 1011222222 221       11    2


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      ..-|++|-.||.+..+-. +-   .+.++.|..    +.+.+.+.+.+.    ...+.++.+|...-+
T Consensus        68 ~~aDiVvitAG~prKpGm-tR---~DLl~~Na~----I~~~i~~~i~~~----~~d~ivlVvtNPvD~  123 (313)
T COG0039          68 KGADIVVITAGVPRKPGM-TR---LDLLEKNAK----IVKDIAKAIAKY----APDAIVLVVTNPVDI  123 (313)
T ss_pred             cCCCEEEEeCCCCCCCCC-CH---HHHHHhhHH----HHHHHHHHHHhh----CCCeEEEEecCcHHH
Confidence            268999999998865542 22   233555554    344444444432    235678888776543

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.37  E-value=0.0055  Score=52.92  Aligned_cols=40  Identities=30%  Similarity=0.358  Sum_probs=35.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA   65 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~   65 (255)
                      .++.+++++|.|. |++|+.+++.|.+.|++|.+.+|+.+.
T Consensus       148 ~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~  187 (296)
T PRK08306        148 ITIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAH  187 (296)
T ss_pred             CCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            4578999999997 679999999999999999999998654

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.36  E-value=0.032  Score=50.15  Aligned_cols=64  Identities=25%  Similarity=0.336  Sum_probs=48.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++.+|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+...+.+.+..|..++..+.
T Consensus        40 L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  118 (392)
T PRK07878         40 LKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHE  118 (392)
T ss_pred             HhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEe
Confidence            57888999986 5999999999999997 68888854                   234555666777777777777666


Q ss_pred             eCCCC
Q 025275           87 LDVSS   91 (255)
Q Consensus        87 ~Dl~~   91 (255)
                      ..++.
T Consensus       119 ~~i~~  123 (392)
T PRK07878        119 FRLDP  123 (392)
T ss_pred             ccCCh
Confidence            66654

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.36  E-value=0.024  Score=48.57  Aligned_cols=79  Identities=19%  Similarity=0.310  Sum_probs=52.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+++++|+|+++++|+++++.+...|++|++++++.++.+.+ .++     +. -.++  |.........+.... . ..
T Consensus       144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~-----g~-~~~~--~~~~~~~~~~~~~~~-~-~~  212 (328)
T cd08268         144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDAL-LAL-----GA-AHVI--VTDEEDLVAEVLRIT-G-GK  212 (328)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHc-----CC-CEEE--ecCCccHHHHHHHHh-C-CC
Confidence            578999999999999999999999999999998887654433 221     21 1222  222222222233222 1 12


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .+|++++++|
T Consensus       213 ~~d~vi~~~~  222 (328)
T cd08268         213 GVDVVFDPVG  222 (328)
T ss_pred             CceEEEECCc
Confidence            5999999887

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK14852 hypothetical protein; Provisional

Probab=96.32  E-value=0.027  Score=55.53  Aligned_cols=83  Identities=14%  Similarity=0.205  Sum_probs=63.5

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++.+|+|.| -||+|..++..|+..|. ++.++|.+                   ..+.+...+.+++..|..++..+
T Consensus       329 kL~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~  407 (989)
T PRK14852        329 RLLRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF  407 (989)
T ss_pred             HHhcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence            36788999998 56999999999999997 68888753                   33566677778888788888888


Q ss_pred             EeCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           86 ELDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        86 ~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ...++. +.++++++       .+|+||.+..
T Consensus       408 ~~~I~~-en~~~fl~-------~~DiVVDa~D  431 (989)
T PRK14852        408 PEGVAA-ETIDAFLK-------DVDLLVDGID  431 (989)
T ss_pred             ecCCCH-HHHHHHhh-------CCCEEEECCC
Confidence            877754 55666665       4788886654

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.30  E-value=0.044  Score=42.85  Aligned_cols=87  Identities=22%  Similarity=0.195  Sum_probs=58.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC-----CCceEEEEeCCCCHHHHHHHHHH--H
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP-----SAKVDAMELDVSSLASVRKFASE--Y  102 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~si~~~~~~--~  102 (255)
                      +++-+.|- |-+|..+|+.|+++|++|.+.+|++++.++..+.-.....     -.+...+-.-+.+.++++.++..  +
T Consensus         2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i   80 (163)
T PF03446_consen    2 MKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI   80 (163)
T ss_dssp             BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred             CEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence            45667776 7999999999999999999999998877666543110000     01235566678888899999888  6


Q ss_pred             hcCCCCeeEEEEccC
Q 025275          103 NSQGRPLNILINNAG  117 (255)
Q Consensus       103 ~~~~g~id~lv~~ag  117 (255)
                      .+....=.++|.+..
T Consensus        81 ~~~l~~g~iiid~sT   95 (163)
T PF03446_consen   81 LAGLRPGKIIIDMST   95 (163)
T ss_dssp             GGGS-TTEEEEE-SS
T ss_pred             hhccccceEEEecCC
Confidence            665544566666654

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.24  E-value=0.014  Score=49.87  Aligned_cols=40  Identities=25%  Similarity=0.342  Sum_probs=36.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      ..+++||.++|.|.+.-+|+.++..|.++|++|.++.+..
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t  192 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS  192 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence            4579999999999999999999999999999999998654

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=96.23  E-value=0.053  Score=46.27  Aligned_cols=105  Identities=16%  Similarity=0.175  Sum_probs=68.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHH-cCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLAL-RGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +|+|++|.||+|.+| +++-||++ .|+.|+...-+.++.+-+..++    +.+.    .+|--++..+.+++++..-  
T Consensus       153 ~geTv~VSaAsGAvG-ql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~----G~d~----afNYK~e~~~~~aL~r~~P--  221 (343)
T KOG1196|consen  153 KGETVFVSAASGAVG-QLVGQFAKLMGCYVVGSAGSKEKVDLLKTKF----GFDD----AFNYKEESDLSAALKRCFP--  221 (343)
T ss_pred             CCCEEEEeeccchhH-HHHHHHHHhcCCEEEEecCChhhhhhhHhcc----CCcc----ceeccCccCHHHHHHHhCC--
Confidence            689999999999999 55566666 7899988887777644443332    2111    1233344456666666422  


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      .+||+.+-|.|.                        .++.+.+..|..       .|||+.++-++.+
T Consensus       222 ~GIDiYfeNVGG------------------------~~lDavl~nM~~-------~gri~~CG~ISqY  258 (343)
T KOG1196|consen  222 EGIDIYFENVGG------------------------KMLDAVLLNMNL-------HGRIAVCGMISQY  258 (343)
T ss_pred             CcceEEEeccCc------------------------HHHHHHHHhhhh-------ccceEeeeeehhc
Confidence            379999999984                        122334455554       6899998866544

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=96.22  E-value=0.033  Score=47.81  Aligned_cols=75  Identities=21%  Similarity=0.347  Sum_probs=53.7

Q ss_pred             EEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEEEeCCCC
Q 025275           32 AIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAMELDVSS   91 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   91 (255)
                      |+|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+++..|+.++..+..++.+
T Consensus         2 VlVVG-aGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           2 ILVIG-AGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             EEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            67776 67999999999999997 68888753                   23455566667777777788888777775


Q ss_pred             HHHHHHHHHHHhcCCCCeeEEEEcc
Q 025275           92 LASVRKFASEYNSQGRPLNILINNA  116 (255)
Q Consensus        92 ~~si~~~~~~~~~~~g~id~lv~~a  116 (255)
                      .+  ..++       ..+|++|.+.
T Consensus        81 ~~--~~f~-------~~fdvVi~al   96 (291)
T cd01488          81 KD--EEFY-------RQFNIIICGL   96 (291)
T ss_pred             hh--HHHh-------cCCCEEEECC
Confidence            32  2233       3578888754

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.21  E-value=0.068  Score=44.30  Aligned_cols=82  Identities=18%  Similarity=0.282  Sum_probs=59.0

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++..|+|.|. ||+|.-.+..|++.|. ++.+++.+                   .++.+.+.+.+....|..++..+.
T Consensus        28 l~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~  106 (263)
T COG1179          28 LKQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIN  106 (263)
T ss_pred             HhhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehH
Confidence            56778888886 6899999999999997 68777753                   334555666666666666666654


Q ss_pred             eCCCCHHHHHHHHHHHhcCCCCeeEEEEcc
Q 025275           87 LDVSSLASVRKFASEYNSQGRPLNILINNA  116 (255)
Q Consensus        87 ~Dl~~~~si~~~~~~~~~~~g~id~lv~~a  116 (255)
                       |+=.++.++.++..      .+|++|-+-
T Consensus       107 -~f~t~en~~~~~~~------~~DyvIDai  129 (263)
T COG1179         107 -DFITEENLEDLLSK------GFDYVIDAI  129 (263)
T ss_pred             -hhhCHhHHHHHhcC------CCCEEEEch
Confidence             55566777777663      688888554

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.18  E-value=0.029  Score=46.50  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=34.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCC---eEEEEEec
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGV---HVIMAVRN   62 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~---~Vi~~~r~   62 (255)
                      ..++++++++|.|+ |+.|.+++..|.+.|.   ++++++|+
T Consensus        20 g~~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          20 GKKIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CCCccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            34688899999998 8999999999999997   49999998

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.18  E-value=0.024  Score=51.32  Aligned_cols=42  Identities=21%  Similarity=0.259  Sum_probs=37.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAG   66 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~   66 (255)
                      ...+.|++++|.|. |.||+.+++.|...|++|+++++++.+.
T Consensus       207 ~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra  248 (425)
T PRK05476        207 NVLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICA  248 (425)
T ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhh
Confidence            44578999999997 6899999999999999999999987654

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.17  E-value=0.013  Score=48.16  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=36.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHH
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA   72 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~   72 (255)
                      ++.|.||+|.+|.++++.|++.|++|++.+|+.++.+...+.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~   43 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAK   43 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHH
Confidence            588999999999999999999999999999998877665554

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.17  E-value=0.02  Score=47.34  Aligned_cols=73  Identities=16%  Similarity=0.252  Sum_probs=55.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHH-HHHHhcCCCCe
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKF-ASEYNSQGRPL  109 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~-~~~~~~~~g~i  109 (255)
                      .++|.|+ |-+|..+|+.|.+.|.+|++++++++...+....      ....+.+..|-++++.+.++ +.       ..
T Consensus         2 ~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~agi~-------~a   67 (225)
T COG0569           2 KIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEAGID-------DA   67 (225)
T ss_pred             EEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhcCCC-------cC
Confidence            4566655 5789999999999999999999998875553221      12578899999998876665 33       46


Q ss_pred             eEEEEccC
Q 025275          110 NILINNAG  117 (255)
Q Consensus       110 d~lv~~ag  117 (255)
                      |++|-..|
T Consensus        68 D~vva~t~   75 (225)
T COG0569          68 DAVVAATG   75 (225)
T ss_pred             CEEEEeeC
Confidence            88887776

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.14  E-value=0.013  Score=46.71  Aligned_cols=44  Identities=27%  Similarity=0.319  Sum_probs=36.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHh
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVK   75 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~   75 (255)
                      +|.|.|+ |.+|.+||..++..|++|.+.+++.+.++...+.+..
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~   44 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER   44 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence            4678888 9999999999999999999999999988777776654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.13  E-value=0.015  Score=50.05  Aligned_cols=45  Identities=27%  Similarity=0.221  Sum_probs=39.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKD   68 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~   68 (255)
                      ..+++||.++|.|.++-+|+.++..|.++|++|.++.+....+.+
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e  198 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKA  198 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHH
Confidence            567899999999999999999999999999999999877654443

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.12  E-value=0.039  Score=48.23  Aligned_cols=73  Identities=19%  Similarity=0.285  Sum_probs=49.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|++++|+|.+ |+|..-++.....|++|+..+|+.++++... ++     +.. +++  |-+|++.++.+-+       
T Consensus       166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~-~l-----GAd-~~i--~~~~~~~~~~~~~-------  228 (339)
T COG1064         166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAK-KL-----GAD-HVI--NSSDSDALEAVKE-------  228 (339)
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHH-Hh-----CCc-EEE--EcCCchhhHHhHh-------
Confidence            48999999999 9996555555559999999999988754433 33     322 222  3335554444433       


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .+|+++.+++
T Consensus       229 ~~d~ii~tv~  238 (339)
T COG1064         229 IADAIIDTVG  238 (339)
T ss_pred             hCcEEEECCC
Confidence            2899998886

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.12  E-value=0.018  Score=43.16  Aligned_cols=89  Identities=24%  Similarity=0.276  Sum_probs=54.0

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhC---C---CCceEEEEeCCCCHHHHHHHHHH
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEI---P---SAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~---~---~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ..++-|.|+ |-+|.++++.|.+.|+.|..+ +|+.++.+.....+....   .   -.....+-+-+.|. .|..+.++
T Consensus        10 ~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va~~   87 (127)
T PF10727_consen   10 RLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVAEQ   87 (127)
T ss_dssp             --EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHHHH
T ss_pred             ccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHHHH
Confidence            356888888 899999999999999997666 566655555554432110   0   11234444456664 79999999


Q ss_pred             HhcC--CCCeeEEEEccCCC
Q 025275          102 YNSQ--GRPLNILINNAGIM  119 (255)
Q Consensus       102 ~~~~--~g~id~lv~~ag~~  119 (255)
                      +...  +.+=.+|+||+|-.
T Consensus        88 La~~~~~~~g~iVvHtSGa~  107 (127)
T PF10727_consen   88 LAQYGAWRPGQIVVHTSGAL  107 (127)
T ss_dssp             HHCC--S-TT-EEEES-SS-
T ss_pred             HHHhccCCCCcEEEECCCCC
Confidence            8876  33336899999963

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.11  E-value=0.22  Score=43.23  Aligned_cols=118  Identities=14%  Similarity=0.174  Sum_probs=72.8

Q ss_pred             EEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC---CCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           32 AIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP---SAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +.|.|+ |.+|..+|..|+.++.  ++++.+.+++.++.....+....+   ..++... .  .++       +.+    
T Consensus         2 i~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~-~--~~y-------~~~----   66 (307)
T cd05290           2 LVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR-A--GDY-------DDC----   66 (307)
T ss_pred             EEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEE-E--CCH-------HHh----
Confidence            678898 9999999999999885  699999988766555544443211   1123333 2  232       222    


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      ...|++|.+||....+- .+.+ -.+.++.|    ..+++...+.+.+.    ...+.+|.+|...-+
T Consensus        67 ~~aDivvitaG~~~kpg-~tr~-R~dll~~N----~~I~~~i~~~i~~~----~p~~i~ivvsNPvDv  124 (307)
T cd05290          67 ADADIIVITAGPSIDPG-NTDD-RLDLAQTN----AKIIREIMGNITKV----TKEAVIILITNPLDI  124 (307)
T ss_pred             CCCCEEEECCCCCCCCC-CCch-HHHHHHHH----HHHHHHHHHHHHHh----CCCeEEEEecCcHHH
Confidence            25799999999865432 2210 12334444    44666666776654    345677877776533

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.10  E-value=0.014  Score=45.67  Aligned_cols=46  Identities=26%  Similarity=0.343  Sum_probs=35.5

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKD   68 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~   68 (255)
                      ...+++||.++|.|.+.-+|+-++..|.++|+.|.++....+.+++
T Consensus        30 ~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~   75 (160)
T PF02882_consen   30 YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQE   75 (160)
T ss_dssp             TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHH
T ss_pred             cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccc
Confidence            3467999999999999999999999999999999998877655443

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.07  E-value=0.026  Score=41.14  Aligned_cols=71  Identities=17%  Similarity=0.256  Sum_probs=50.7

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeE
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNI  111 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~  111 (255)
                      ++|.|. |.+|+.+++.|.+.+.+|++++++++..++.    ...  +  +.++..|.++++.++++--      ...+.
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~----~~~--~--~~~i~gd~~~~~~l~~a~i------~~a~~   65 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEEL----REE--G--VEVIYGDATDPEVLERAGI------EKADA   65 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHH----HHT--T--SEEEES-TTSHHHHHHTTG------GCESE
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHH----Hhc--c--cccccccchhhhHHhhcCc------cccCE
Confidence            466776 5799999999999777999999998764333    332  2  6789999999987766522      25777


Q ss_pred             EEEccC
Q 025275          112 LINNAG  117 (255)
Q Consensus       112 lv~~ag  117 (255)
                      +|-..+
T Consensus        66 vv~~~~   71 (116)
T PF02254_consen   66 VVILTD   71 (116)
T ss_dssp             EEEESS
T ss_pred             EEEccC
Confidence            776654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.06  E-value=0.035  Score=38.47  Aligned_cols=36  Identities=33%  Similarity=0.466  Sum_probs=31.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEe
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRG-VHVIMAVR   61 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r   61 (255)
                      .++++++++|.|+ |++|+.+++.|.+.| .+|.+.+|
T Consensus        19 ~~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          19 KSLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence            5578899999999 999999999999984 57888877

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.03  E-value=0.049  Score=40.64  Aligned_cols=80  Identities=20%  Similarity=0.222  Sum_probs=52.8

Q ss_pred             EEEEecCCCchHHHHHHHHHH-cCCe-EEEEEeccch-H----H-------------HHHHHHHhhCCCCceEEEEeCCC
Q 025275           31 TAIVTGASSGIGTETARVLAL-RGVH-VIMAVRNMAA-G----K-------------DVREAIVKEIPSAKVDAMELDVS   90 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~-~G~~-Vi~~~r~~~~-~----~-------------~~~~~~~~~~~~~~~~~~~~Dl~   90 (255)
                      +++|.|++|-+|+.+++.+.+ .+++ +.+++|+.+. .    .             ...+++... .+     +-.|++
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~-~D-----VvIDfT   75 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE-AD-----VVIDFT   75 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH--S-----EEEEES
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc-CC-----EEEEcC
Confidence            589999999999999999999 6677 4444555510 0    0             112222221 11     556999


Q ss_pred             CHHHHHHHHHHHhcCCCCeeEEEEccCC
Q 025275           91 SLASVRKFASEYNSQGRPLNILINNAGI  118 (255)
Q Consensus        91 ~~~si~~~~~~~~~~~g~id~lv~~ag~  118 (255)
                      .++.+...++.+.+.  ++.+|+-..|.
T Consensus        76 ~p~~~~~~~~~~~~~--g~~~ViGTTG~  101 (124)
T PF01113_consen   76 NPDAVYDNLEYALKH--GVPLVIGTTGF  101 (124)
T ss_dssp             -HHHHHHHHHHHHHH--T-EEEEE-SSS
T ss_pred             ChHHhHHHHHHHHhC--CCCEEEECCCC
Confidence            999988888887766  68889988884

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=96.02  E-value=0.18  Score=39.86  Aligned_cols=75  Identities=19%  Similarity=0.148  Sum_probs=53.8

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .++++++=.|++.|   .++..+++.|.+|+.++.+++.++...+.+...  +.++.++..|+.+..            .
T Consensus        18 ~~~~~vLdlG~G~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~------------~   80 (179)
T TIGR00537        18 LKPDDVLEIGAGTG---LVAIRLKGKGKCILTTDINPFAVKELRENAKLN--NVGLDVVMTDLFKGV------------R   80 (179)
T ss_pred             cCCCeEEEeCCChh---HHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHc--CCceEEEEccccccc------------C
Confidence            34577888888877   456667777778999999988777777766554  346788888875421            1


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +.+|+++.|...
T Consensus        81 ~~fD~Vi~n~p~   92 (179)
T TIGR00537        81 GKFDVILFNPPY   92 (179)
T ss_pred             CcccEEEECCCC
Confidence            368999988654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=96.01  E-value=0.13  Score=46.05  Aligned_cols=118  Identities=14%  Similarity=0.129  Sum_probs=70.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-e----EEE----EEeccchHHHHHHHHHhhC-CC-CceEEEEeCCCCHHHHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-H----VIM----AVRNMAAGKDVREAIVKEI-PS-AKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-~----Vi~----~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~Dl~~~~si~~~   98 (255)
                      -++.|+|++|.+|.++|..|+..|. .    |.+    .+++.+.++.....+.... +. .++. +..  .+++    .
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~-i~~--~~y~----~  117 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVS-IGI--DPYE----V  117 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceE-Eec--CCHH----H
Confidence            3689999999999999999998874 3    344    4888887766666655432 11 1111 111  1211    1


Q ss_pred             HHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           99 ASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      +       ...|++|..||.+..+. .+   -.+.++.|+.    +++...+.+.+.   .++.+.||.+|...
T Consensus       118 ~-------kdaDIVVitAG~prkpg-~t---R~dll~~N~~----I~k~i~~~I~~~---a~~~~iviVVsNPv  173 (387)
T TIGR01757       118 F-------EDADWALLIGAKPRGPG-ME---RADLLDINGQ----IFADQGKALNAV---ASKNCKVLVVGNPC  173 (387)
T ss_pred             h-------CCCCEEEECCCCCCCCC-CC---HHHHHHHHHH----HHHHHHHHHHHh---CCCCeEEEEcCCcH
Confidence            2       25899999999865432 22   2334555554    444444444431   12467888888755

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.00  E-value=0.035  Score=50.59  Aligned_cols=78  Identities=14%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ...+.++|.|+ |.+|+.+++.|.+.|.+|++++++++..+...++      ...+.++..|.++.+.+.++-      .
T Consensus       229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~------~~~~~~i~gd~~~~~~L~~~~------~  295 (453)
T PRK09496        229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE------LPNTLVLHGDGTDQELLEEEG------I  295 (453)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH------CCCCeEEECCCCCHHHHHhcC------C
Confidence            45688999999 9999999999999999999999988765444332      224567888999887654432      1


Q ss_pred             CCeeEEEEccC
Q 025275          107 RPLNILINNAG  117 (255)
Q Consensus       107 g~id~lv~~ag  117 (255)
                      ...|.+|.+.+
T Consensus       296 ~~a~~vi~~~~  306 (453)
T PRK09496        296 DEADAFIALTN  306 (453)
T ss_pred             ccCCEEEECCC
Confidence            24677775543

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.99  E-value=0.069  Score=49.20  Aligned_cols=77  Identities=14%  Similarity=0.139  Sum_probs=51.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc-hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .+++++++|.|+ |++|.++|+.|+++|++|.+.+++.. ......+.+.+.  +  +.+...+-..      .      
T Consensus        13 ~~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~--g--v~~~~~~~~~------~------   75 (480)
T PRK01438         13 DWQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL--G--ATVRLGPGPT------L------   75 (480)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc--C--CEEEECCCcc------c------
Confidence            467889999997 67999999999999999999986643 233334445443  2  3333222111      0      


Q ss_pred             CCCCeeEEEEccCCCC
Q 025275          105 QGRPLNILINNAGIMA  120 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~  120 (255)
                       ...+|.+|...|+.+
T Consensus        76 -~~~~D~Vv~s~Gi~~   90 (480)
T PRK01438         76 -PEDTDLVVTSPGWRP   90 (480)
T ss_pred             -cCCCCEEEECCCcCC
Confidence             124799999998753

>PRK05442 malate dehydrogenase; Provisional

Probab=95.99  E-value=0.038  Score=48.39  Aligned_cols=118  Identities=16%  Similarity=0.078  Sum_probs=67.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-------eEEEEEeccc--hHHHHHHHHHhhC-CC-CceEEEEeCCCCHHHHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-------HVIMAVRNMA--AGKDVREAIVKEI-PS-AKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-------~Vi~~~r~~~--~~~~~~~~~~~~~-~~-~~~~~~~~Dl~~~~si~~~   98 (255)
                      +++.|+|++|.+|..+|..|+..|.       ++++.|.++.  .++.....+.... +. .++.+ ..  .+       
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i-~~--~~-------   74 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI-TD--DP-------   74 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE-ec--Ch-------
Confidence            4789999999999999999998773       6999998543  2322222222111 10 01111 10  11       


Q ss_pred             HHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           99 ASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      .    +.+..-|++|.+||....+. .+   -.+.++.|+.    +++.+.+.+.+..   ...+.+|.+|...
T Consensus        75 y----~~~~daDiVVitaG~~~k~g-~t---R~dll~~Na~----i~~~i~~~i~~~~---~~~~iiivvsNPv  133 (326)
T PRK05442         75 N----VAFKDADVALLVGARPRGPG-ME---RKDLLEANGA----IFTAQGKALNEVA---ARDVKVLVVGNPA  133 (326)
T ss_pred             H----HHhCCCCEEEEeCCCCCCCC-Cc---HHHHHHHHHH----HHHHHHHHHHHhC---CCCeEEEEeCCch
Confidence            1    12236899999999765432 22   2334555544    4555555555421   2356888887654

>PRK08655 prephenate dehydrogenase; Provisional

Probab=95.97  E-value=0.069  Score=48.72  Aligned_cols=39  Identities=33%  Similarity=0.533  Sum_probs=34.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV   69 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~   69 (255)
                      ++.|.||.|.+|..+++.|.+.|.+|++.+|+.+...+.
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~   40 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEV   40 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHH
Confidence            589999999999999999999999999999987664443

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.96  E-value=0.061  Score=49.07  Aligned_cols=78  Identities=18%  Similarity=0.130  Sum_probs=51.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++.+|+++|+|.+ +.|.++|+.|+++|+.|.+.+.....  ...+++...  ...+.+..... +..    .+      
T Consensus         2 ~~~~~~~~v~G~g-~~G~~~a~~l~~~g~~v~~~d~~~~~--~~~~~l~~~--~~gi~~~~g~~-~~~----~~------   65 (445)
T PRK04308          2 TFQNKKILVAGLG-GTGISMIAYLRKNGAEVAAYDAELKP--ERVAQIGKM--FDGLVFYTGRL-KDA----LD------   65 (445)
T ss_pred             CCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCCCc--hhHHHHhhc--cCCcEEEeCCC-CHH----HH------
Confidence            4678999999986 89999999999999999999876542  112333321  11233333221 111    11      


Q ss_pred             CCCeeEEEEccCCCC
Q 025275          106 GRPLNILINNAGIMA  120 (255)
Q Consensus       106 ~g~id~lv~~ag~~~  120 (255)
                       ...|.||...|+.+
T Consensus        66 -~~~d~vv~spgi~~   79 (445)
T PRK04308         66 -NGFDILALSPGISE   79 (445)
T ss_pred             -hCCCEEEECCCCCC
Confidence             24799999999863

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=95.95  E-value=0.06  Score=47.79  Aligned_cols=79  Identities=18%  Similarity=0.177  Sum_probs=51.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-HHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-LASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~si~~~~~~~~~~  105 (255)
                      .|.++||+|+ |+||...++.+...|+ +|+.++++.++++.. +++     +.. ..+  |..+ .+.+...+.++.. 
T Consensus       185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a-~~~-----Ga~-~~i--~~~~~~~~~~~~v~~~~~-  253 (368)
T TIGR02818       185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELA-KKL-----GAT-DCV--NPNDYDKPIQEVIVEITD-  253 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh-----CCC-eEE--cccccchhHHHHHHHHhC-
Confidence            4789999985 8999998888888898 799998887764443 333     221 122  3332 2233334444333 


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                       +++|++|.++|.
T Consensus       254 -~g~d~vid~~G~  265 (368)
T TIGR02818       254 -GGVDYSFECIGN  265 (368)
T ss_pred             -CCCCEEEECCCC
Confidence             369999999883

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=95.90  E-value=0.055  Score=46.57  Aligned_cols=79  Identities=22%  Similarity=0.291  Sum_probs=52.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+.+++|+|+++++|.++++.+...|++|+.++++.++.+.. +++     +.. .++  |..+.+..+.+.+..  ...
T Consensus       142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~-~~~-----g~~-~~~--~~~~~~~~~~~~~~~--~~~  210 (324)
T cd08244         142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALV-RAL-----GAD-VAV--DYTRPDWPDQVREAL--GGG  210 (324)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc-----CCC-EEE--ecCCccHHHHHHHHc--CCC
Confidence            478999999999999999999999999999998887654332 222     221 122  333433333332221  112


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .+|+++++.|
T Consensus       211 ~~d~vl~~~g  220 (324)
T cd08244         211 GVTVVLDGVG  220 (324)
T ss_pred             CceEEEECCC
Confidence            5999999887

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=95.89  E-value=0.065  Score=48.01  Aligned_cols=76  Identities=16%  Similarity=0.188  Sum_probs=54.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +..+.|+++|+|++ -+|+.+++.+.+.|++|++++.+++.....   .     ..  ..+.+|..|.+.+..++++.  
T Consensus         8 ~~~~~~~ilIiG~g-~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~---~-----ad--~~~~~~~~d~~~l~~~~~~~--   74 (395)
T PRK09288          8 LSPSATRVMLLGSG-ELGKEVAIEAQRLGVEVIAVDRYANAPAMQ---V-----AH--RSHVIDMLDGDALRAVIERE--   74 (395)
T ss_pred             CCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCCCCchHH---h-----hh--heEECCCCCHHHHHHHHHHh--
Confidence            33466799999876 589999999999999999999876542111   1     11  24566888888777777653  


Q ss_pred             CCCCeeEEEEcc
Q 025275          105 QGRPLNILINNA  116 (255)
Q Consensus       105 ~~g~id~lv~~a  116 (255)
                         .+|.++...
T Consensus        75 ---~id~vi~~~   83 (395)
T PRK09288         75 ---KPDYIVPEI   83 (395)
T ss_pred             ---CCCEEEEee
Confidence               588887543

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=95.88  E-value=0.035  Score=52.36  Aligned_cols=62  Identities=24%  Similarity=0.374  Sum_probs=46.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec----------------------cchHHHHHHHHHhhCCCCceE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN----------------------MAAGKDVREAIVKEIPSAKVD   83 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~----------------------~~~~~~~~~~~~~~~~~~~~~   83 (255)
                      +++.+|+|.|+ ||+|..+|+.|+..|. ++.+++.+                      ..+.....+.+++..|+.++.
T Consensus       336 L~~~kVLIvGa-GGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~  414 (664)
T TIGR01381       336 YSQLKVLLLGA-GTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQAT  414 (664)
T ss_pred             HhcCeEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEE
Confidence            46888999987 5899999999999997 68888853                      224445566677777777776


Q ss_pred             EEEeCC
Q 025275           84 AMELDV   89 (255)
Q Consensus        84 ~~~~Dl   89 (255)
                      .+...+
T Consensus       415 ~~~~~I  420 (664)
T TIGR01381       415 GHRLTV  420 (664)
T ss_pred             Eeeeee
Confidence            666553

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.87  E-value=0.099  Score=45.01  Aligned_cols=30  Identities=30%  Similarity=0.458  Sum_probs=24.8

Q ss_pred             EEEecCCCchHHHHHHHHHHcCC-eEEEEEec
Q 025275           32 AIVTGASSGIGTETARVLALRGV-HVIMAVRN   62 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~   62 (255)
                      |+|.|+ ||+|..+|+.|+..|. ++.++|.+
T Consensus         2 VLIvGa-GGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           2 CLLLGA-GTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEECCC
Confidence            667765 5999999999999997 68888753

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.84  E-value=0.31  Score=42.27  Aligned_cols=116  Identities=17%  Similarity=0.219  Sum_probs=67.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++.|.|+ |.+|..++..|+.+|  .+|++.+++.+..+.....+....+ ....... .  ++++       .    ..
T Consensus         2 kI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~-~--~d~~-------~----l~   66 (308)
T cd05292           2 KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY-A--GDYA-------D----CK   66 (308)
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe-e--CCHH-------H----hC
Confidence            4888998 899999999999999  4799999998766533333332111 1111111 1  2221       1    23


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                      ..|++|.+++....+. .   +..+.+..|+    -+.+.+.+.+.+.    ...|.++.++....
T Consensus        67 ~aDiViita~~~~~~~-~---~r~dl~~~n~----~i~~~~~~~l~~~----~~~giiiv~tNP~d  120 (308)
T cd05292          67 GADVVVITAGANQKPG-E---TRLDLLKRNV----AIFKEIIPQILKY----APDAILLVVTNPVD  120 (308)
T ss_pred             CCCEEEEccCCCCCCC-C---CHHHHHHHHH----HHHHHHHHHHHHH----CCCeEEEEecCcHH
Confidence            5899999999754321 1   2233344343    4444455555442    34578888876543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]

Probab=95.82  E-value=0.017  Score=52.07  Aligned_cols=83  Identities=19%  Similarity=0.175  Sum_probs=57.0

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++-++||.|| ||||-.+.+-|+..|+ +|.+++.+.=.+..+         +.++.|-+=|+....+  .+..++.++
T Consensus        10 i~~~riLvVGa-GGIGCELLKnLal~gf~~IhiIDlDTIDlSNL---------NRQFLFrkkhVgqsKA--~vA~~~v~~   77 (603)
T KOG2013|consen   10 IKSGRILVVGA-GGIGCELLKNLALTGFEEIHIIDLDTIDLSNL---------NRQFLFRKKHVGQSKA--TVAAKAVKQ   77 (603)
T ss_pred             hccCeEEEEec-CcccHHHHHHHHHhcCCeeEEEeccceeccch---------hhhheeehhhcCchHH--HHHHHHHHH
Confidence            45678999987 6899999999999998 588888765433222         3345666667776543  233444444


Q ss_pred             C-CCeeEEEEccCCCCC
Q 025275          106 G-RPLNILINNAGIMAS  121 (255)
Q Consensus       106 ~-g~id~lv~~ag~~~~  121 (255)
                      | +.++++.++|.+..+
T Consensus        78 Fnpn~~l~~yhanI~e~   94 (603)
T KOG2013|consen   78 FNPNIKLVPYHANIKEP   94 (603)
T ss_pred             hCCCCceEeccccccCc
Confidence            4 578888888877544

>PRK13243 glyoxylate reductase; Reviewed

Probab=95.81  E-value=0.11  Score=45.62  Aligned_cols=41  Identities=27%  Similarity=0.282  Sum_probs=36.6

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA   65 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~   65 (255)
                      ..++.||++.|.|- |.||+.+|+.|...|++|++.+|+...
T Consensus       145 g~~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~  185 (333)
T PRK13243        145 GYDVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKP  185 (333)
T ss_pred             ccCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence            45789999999998 899999999999999999999987543

>PLN02740 Alcohol dehydrogenase-like

Probab=95.80  E-value=0.06  Score=48.03  Aligned_cols=79  Identities=16%  Similarity=0.171  Sum_probs=52.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCH-HHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL-ASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~si~~~~~~~~~~  105 (255)
                      .|.+++|.|+ |++|...++.+...|+ +|++++++.++++.. +++     +.. .++  |..+. +.+...+.++...
T Consensus       198 ~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a-~~~-----Ga~-~~i--~~~~~~~~~~~~v~~~~~~  267 (381)
T PLN02740        198 AGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKG-KEM-----GIT-DFI--NPKDSDKPVHERIREMTGG  267 (381)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHH-HHc-----CCc-EEE--ecccccchHHHHHHHHhCC
Confidence            5889999985 9999999998888998 599998887665443 222     322 222  33332 1233334443322


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                        .+|+++.++|.
T Consensus       268 --g~dvvid~~G~  278 (381)
T PLN02740        268 --GVDYSFECAGN  278 (381)
T ss_pred             --CCCEEEECCCC
Confidence              69999999984

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.78  E-value=0.32  Score=42.01  Aligned_cols=118  Identities=18%  Similarity=0.259  Sum_probs=66.1

Q ss_pred             EEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           32 AIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +.|.|+ |.+|..+|..|+.+|. +|++.+++++.++.....+.....  ..... +.. -+|.+   + ++       .
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~-I~~-t~d~~---~-l~-------d   66 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTK-VTG-TNDYE---D-IA-------G   66 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeE-EEE-cCCHH---H-hC-------C
Confidence            358898 8899999999998876 999999997754322222221100  11111 111 12211   1 22       5


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      .|++|.++|.+..+. .+-.   +.+.-|    +-+.+.+.+.+.+.    ...+.+|++|......
T Consensus        67 ADiVIit~g~p~~~~-~~r~---e~~~~n----~~i~~~i~~~i~~~----~p~~~iIv~sNP~di~  121 (300)
T cd01339          67 SDVVVITAGIPRKPG-MSRD---DLLGTN----AKIVKEVAENIKKY----APNAIVIVVTNPLDVM  121 (300)
T ss_pred             CCEEEEecCCCCCcC-CCHH---HHHHHH----HHHHHHHHHHHHHH----CCCeEEEEecCcHHHH
Confidence            799999999754432 2211   223333    34555555655543    2356778887765443

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.76  E-value=0.22  Score=43.68  Aligned_cols=67  Identities=16%  Similarity=0.201  Sum_probs=46.9

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHH---HHHhhCCCCceEEEEeCCCC
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVRE---AIVKEIPSAKVDAMELDVSS   91 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~Dl~~   91 (255)
                      +..+.|+++.|.|. |.||+++|+.|...|++|++.+|+.+......+   .+.+......+..+-+-++.
T Consensus       141 ~~~l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~  210 (330)
T PRK12480        141 SKPVKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANK  210 (330)
T ss_pred             ccccCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcH
Confidence            34689999999976 679999999999999999999988654322111   12222224566777666665

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=95.75  E-value=0.037  Score=47.67  Aligned_cols=80  Identities=21%  Similarity=0.265  Sum_probs=51.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.+++|.|+++.+|.++++.+...|++|+++.++.++.....    +.  +.. .++  +-.+.+ ....+.+.... .
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~----~~--g~~-~~~--~~~~~~-~~~~i~~~~~~-~  207 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELR----AL--GIG-PVV--STEQPG-WQDKVREAAGG-A  207 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHH----hc--CCC-EEE--cCCCch-HHHHHHHHhCC-C
Confidence            5789999999999999999999999999999887766533332    22  221 222  223322 22233333221 2


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|+++.+.|.
T Consensus       208 ~~d~v~d~~g~  218 (324)
T cd08292         208 PISVALDSVGG  218 (324)
T ss_pred             CCcEEEECCCC
Confidence            59999998873

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=95.74  E-value=0.081  Score=46.51  Aligned_cols=41  Identities=22%  Similarity=0.222  Sum_probs=35.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV   69 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~   69 (255)
                      .|.+++|.|+ |++|...++.+...|++|++++++.++++..
T Consensus       166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~  206 (349)
T TIGR03201       166 KGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM  206 (349)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence            4889999999 9999999988888999999998887765433

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]

Probab=95.74  E-value=0.12  Score=43.96  Aligned_cols=87  Identities=15%  Similarity=0.147  Sum_probs=54.0

Q ss_pred             CcEEEEecCCCchHHHH--HHHHHHcCCeEEEEEeccc-----------hHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Q 025275           29 GLTAIVTGASSGIGTET--ARVLALRGVHVIMAVRNMA-----------AGKDVREAIVKEIPSAKVDAMELDVSSLASV   95 (255)
Q Consensus        29 ~k~vlItG~s~giG~~i--a~~L~~~G~~Vi~~~r~~~-----------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si   95 (255)
                      -|+|||.|+|+|.|++-  +..|- .|+.-+.+....+           -.....+++..+. +--..-+..|.-+.+--
T Consensus        41 PKkVLviGaSsGyGLa~RIsaaFG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~k-GlyAksingDaFS~e~k  118 (398)
T COG3007          41 PKKVLVIGASSGYGLAARISAAFG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQK-GLYAKSINGDAFSDEMK  118 (398)
T ss_pred             CceEEEEecCCcccHHHHHHHHhC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhc-CceeeecccchhhHHHH
Confidence            37999999999999874  33333 3444433332111           1122223332221 33334455677777778


Q ss_pred             HHHHHHHhcCCCCeeEEEEccC
Q 025275           96 RKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        96 ~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      +.+++.|++.+|.+|.+|+.-+
T Consensus       119 ~kvIe~Ik~~~g~vDlvvYSlA  140 (398)
T COG3007         119 QKVIEAIKQDFGKVDLVVYSLA  140 (398)
T ss_pred             HHHHHHHHHhhccccEEEEecc
Confidence            8889999999999999998755

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.74  E-value=0.047  Score=48.84  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=31.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccc
Q 025275           28 TGLTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMA   64 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~   64 (255)
                      +.+++.|.||||.+|+++.+.|.++ +++|..+.++..
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~s   74 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRK   74 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhh
Confidence            4458999999999999999999998 568888777543

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=95.73  E-value=0.075  Score=47.13  Aligned_cols=79  Identities=15%  Similarity=0.151  Sum_probs=53.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCH-HHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL-ASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~si~~~~~~~~~~  105 (255)
                      .|.++||.|+ |++|...++.+...|+ .|+.++++.++++.. +++     +.. .++  |..+. +++...+.++.. 
T Consensus       186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~l-----Ga~-~~i--~~~~~~~~~~~~v~~~~~-  254 (368)
T cd08300         186 PGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKF-----GAT-DCV--NPKDHDKPIQQVLVEMTD-  254 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc-----CCC-EEE--cccccchHHHHHHHHHhC-
Confidence            4889999975 8999999998888999 699999888765433 332     322 222  33332 234444544433 


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                       +++|+++.+.|.
T Consensus       255 -~g~d~vid~~g~  266 (368)
T cd08300         255 -GGVDYTFECIGN  266 (368)
T ss_pred             -CCCcEEEECCCC
Confidence             369999999873

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=95.70  E-value=0.042  Score=47.48  Aligned_cols=77  Identities=19%  Similarity=0.298  Sum_probs=50.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+.+++|.|++|++|.++++.+...|++|+.+.++.++.+.. +++     +.. .+  .|..+. . ...+.+..  .+
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~-~v--~~~~~~-~-~~~~~~~~--~~  212 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL-KKL-----GAK-EV--IPREEL-Q-EESIKPLE--KQ  212 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH-HHc-----CCC-EE--EcchhH-H-HHHHHhhc--cC
Confidence            367999999999999999999999999999998887664333 222     221 11  222222 1 22233331  23


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .+|+++.+.|
T Consensus       213 ~~d~vld~~g  222 (326)
T cd08289         213 RWAGAVDPVG  222 (326)
T ss_pred             CcCEEEECCc
Confidence            5899998876

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.68  E-value=0.3  Score=42.34  Aligned_cols=121  Identities=18%  Similarity=0.120  Sum_probs=68.5

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCce-EEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKV-DAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +++.|.|+ |.+|..+|..|+.+|. +|++.+.+.+..+.....+....+.... ..+.. -+|.+   . +       .
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~-t~d~~---~-~-------~   68 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG-TNNYA---D-T-------A   68 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe-cCCHH---H-h-------C
Confidence            45788887 8899999999999886 8999999766433221112111000000 01111 02211   1 1       2


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      ..|++|.++|.+..+ +.+   -.+.+..|+.-...+++.+.++.        ..+.||++|......
T Consensus        69 ~aDiVIitag~p~~~-~~s---R~~l~~~N~~iv~~i~~~I~~~~--------p~~~iIv~tNP~di~  124 (305)
T TIGR01763        69 NSDIVVITAGLPRKP-GMS---REDLLSMNAGIVREVTGRIMEHS--------PNPIIVVVSNPLDAM  124 (305)
T ss_pred             CCCEEEEcCCCCCCc-CCC---HHHHHHHHHHHHHHHHHHHHHHC--------CCeEEEEecCcHHHH
Confidence            579999999975443 222   22345555555555555544443        356888888876544

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK06487 glycerate dehydrogenase; Provisional

Probab=95.68  E-value=0.062  Score=46.88  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=33.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN   62 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~   62 (255)
                      .++.||++.|.|- |.||+++|+.|...|++|+..+|.
T Consensus       144 ~~l~gktvgIiG~-G~IG~~vA~~l~~fgm~V~~~~~~  180 (317)
T PRK06487        144 VELEGKTLGLLGH-GELGGAVARLAEAFGMRVLIGQLP  180 (317)
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCC
Confidence            4789999999997 899999999999999999988875

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.67  E-value=0.036  Score=45.08  Aligned_cols=39  Identities=18%  Similarity=0.311  Sum_probs=34.6

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      .++++||.+||.|| |.+|...++.|.+.|++|.++++..
T Consensus         5 ~l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          5 MIDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             EEEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            35789999999998 8999999999999999999997654

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=95.66  E-value=0.043  Score=47.86  Aligned_cols=78  Identities=21%  Similarity=0.191  Sum_probs=50.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCe-EEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVH-VIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.+++|+|+ |++|...++.+...|++ |++++++.++.+.. +++     +.. .+  .|..+++ .+.+. +... .
T Consensus       163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~~~-----ga~-~~--i~~~~~~-~~~~~-~~~~-~  229 (339)
T cd08239         163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELA-KAL-----GAD-FV--INSGQDD-VQEIR-ELTS-G  229 (339)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-----CCC-EE--EcCCcch-HHHHH-HHhC-C
Confidence            4889999986 89999999988889998 99988887654332 333     221 12  2444433 33332 2211 1


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      .++|++|.+.|.
T Consensus       230 ~~~d~vid~~g~  241 (339)
T cd08239         230 AGADVAIECSGN  241 (339)
T ss_pred             CCCCEEEECCCC
Confidence            259999999873

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=95.66  E-value=0.079  Score=46.91  Aligned_cols=74  Identities=12%  Similarity=0.199  Sum_probs=47.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|++++|.|+ |+||...++.+...|++|++++.+.++..+..+++     +.. .++  |..+.+.+..    .   .+
T Consensus       183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~-----Ga~-~vi--~~~~~~~~~~----~---~~  246 (360)
T PLN02586        183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL-----GAD-SFL--VSTDPEKMKA----A---IG  246 (360)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC-----CCc-EEE--cCCCHHHHHh----h---cC
Confidence            5789999765 89999998888889999988887766544443333     221 122  3333322222    1   13


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .+|++|.+.|
T Consensus       247 ~~D~vid~~g  256 (360)
T PLN02586        247 TMDYIIDTVS  256 (360)
T ss_pred             CCCEEEECCC
Confidence            5899999887

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.64  E-value=0.059  Score=49.29  Aligned_cols=41  Identities=22%  Similarity=0.276  Sum_probs=36.2

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA   65 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~   65 (255)
                      ...+.||+++|.|.+ .||+.+|+.|...|++|+++++++..
T Consensus       249 ~~~LaGKtVgVIG~G-~IGr~vA~rL~a~Ga~ViV~e~dp~~  289 (476)
T PTZ00075        249 DVMIAGKTVVVCGYG-DVGKGCAQALRGFGARVVVTEIDPIC  289 (476)
T ss_pred             CCCcCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            357899999999987 59999999999999999999888654

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=95.60  E-value=0.053  Score=46.90  Aligned_cols=78  Identities=17%  Similarity=0.320  Sum_probs=51.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+.+++|.|+++.+|.++++.....|++|+.+.++.++.+.. +++     +.. .++  |..+. +....+.+...  +
T Consensus       139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~-~v~--~~~~~-~~~~~~~~~~~--~  206 (329)
T cd08250         139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFL-KSL-----GCD-RPI--NYKTE-DLGEVLKKEYP--K  206 (329)
T ss_pred             CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHH-HHc-----CCc-eEE--eCCCc-cHHHHHHHhcC--C
Confidence            578999999999999999998888999999988876654333 222     221 122  22222 23333333321  3


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .+|+++++.|
T Consensus       207 ~vd~v~~~~g  216 (329)
T cd08250         207 GVDVVYESVG  216 (329)
T ss_pred             CCeEEEECCc
Confidence            5899998876

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=95.59  E-value=0.09  Score=44.99  Aligned_cols=76  Identities=14%  Similarity=0.236  Sum_probs=50.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.+++|.|+++++|.++++.+...|++|+.+.++.++.+.+ +++     +.. .++. +  .. +....+.+.   .+
T Consensus       142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~-~~~~-~--~~-~~~~~i~~~---~~  207 (320)
T cd08243         142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALL-KEL-----GAD-EVVI-D--DG-AIAEQLRAA---PG  207 (320)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-Hhc-----CCc-EEEe-c--Cc-cHHHHHHHh---CC
Confidence            578999999999999999999999999999888886553332 222     221 1221 2  21 222223333   23


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|+++.+.|
T Consensus       208 ~~d~vl~~~~  217 (320)
T cd08243         208 GFDKVLELVG  217 (320)
T ss_pred             CceEEEECCC
Confidence            6999998886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.58  E-value=0.029  Score=39.47  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=31.2

Q ss_pred             CCCchHHHHHHHHHHcC---CeEEEE-EeccchHHHHHHHH
Q 025275           37 ASSGIGTETARVLALRG---VHVIMA-VRNMAAGKDVREAI   73 (255)
Q Consensus        37 ~s~giG~~ia~~L~~~G---~~Vi~~-~r~~~~~~~~~~~~   73 (255)
                      |+|.+|.++++.|.+.|   .+|++. +|++++.++..++.
T Consensus         6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~   46 (96)
T PF03807_consen    6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY   46 (96)
T ss_dssp             STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh
Confidence            88999999999999999   888855 89988876666553

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=95.57  E-value=0.054  Score=46.21  Aligned_cols=40  Identities=28%  Similarity=0.384  Sum_probs=35.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGK   67 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~   67 (255)
                      .+.+++|+|+++++|.++++.+...|+.|+.++++.+..+
T Consensus       139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  178 (323)
T cd08241         139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLA  178 (323)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHH
Confidence            5789999999999999999999999999999988865543

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.55  E-value=0.026  Score=48.05  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=37.1

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHH
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAI   73 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~   73 (255)
                      +++++|.|+ ||.+++++..|++.|+ +|.+++|+.++.+++.+.+
T Consensus       122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~  166 (272)
T PRK12550        122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY  166 (272)
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh
Confidence            468999986 8999999999999998 5999999988776665543

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=95.55  E-value=0.081  Score=47.72  Aligned_cols=87  Identities=8%  Similarity=0.070  Sum_probs=50.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC---eEEEEEeccchHHHHHHHHHhhC--CCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV---HVIMAVRNMAAGKDVREAIVKEI--PSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~---~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .|.+++|.||+|++|...++.+...|.   +|++++++.++++...+.+....  .+.....  .|..+.+.+.+.+.+.
T Consensus       175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~--i~~~~~~~~~~~v~~~  252 (410)
T cd08238         175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLY--VNPATIDDLHATLMEL  252 (410)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEE--ECCCccccHHHHHHHH
Confidence            467999999999999887776665553   69999988877654433211000  0111112  2433322333333333


Q ss_pred             hcCCCCeeEEEEccC
Q 025275          103 NSQGRPLNILINNAG  117 (255)
Q Consensus       103 ~~~~g~id~lv~~ag  117 (255)
                      .. ..++|++|.++|
T Consensus       253 t~-g~g~D~vid~~g  266 (410)
T cd08238         253 TG-GQGFDDVFVFVP  266 (410)
T ss_pred             hC-CCCCCEEEEcCC
Confidence            22 235899998876

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.55  E-value=0.044  Score=46.85  Aligned_cols=40  Identities=23%  Similarity=0.247  Sum_probs=35.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      ..++.||.++|.|.+..+|+-++..|.++|++|.++....
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t  191 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT  191 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc
Confidence            4678999999999999999999999999999998885443

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=95.51  E-value=0.11  Score=44.19  Aligned_cols=79  Identities=22%  Similarity=0.308  Sum_probs=50.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+.+++|.|+++++|.++++.+...|++|+.+.++.++.+.+ .++     +.. .++  +..+......+ .+... ..
T Consensus       136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~-~~~--~~~~~~~~~~~-~~~~~-~~  204 (320)
T cd05286         136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELA-RAA-----GAD-HVI--NYRDEDFVERV-REITG-GR  204 (320)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHC-----CCC-EEE--eCCchhHHHHH-HHHcC-CC
Confidence            578999999999999999999999999999988776654333 221     221 222  22222222222 22211 12


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .+|+++++.+
T Consensus       205 ~~d~vl~~~~  214 (320)
T cd05286         205 GVDVVYDGVG  214 (320)
T ss_pred             CeeEEEECCC
Confidence            5999999876

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=95.51  E-value=0.083  Score=45.93  Aligned_cols=38  Identities=18%  Similarity=0.165  Sum_probs=34.4

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      .++.||++.|.|- |.||+++|+.+...|++|+..+|..
T Consensus       141 ~~L~gktvGIiG~-G~IG~~vA~~~~~fgm~V~~~d~~~  178 (311)
T PRK08410        141 GEIKGKKWGIIGL-GTIGKRVAKIAQAFGAKVVYYSTSG  178 (311)
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHhhcCCEEEEECCCc
Confidence            5799999999987 8999999999999999999998753

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.51  E-value=0.073  Score=42.80  Aligned_cols=39  Identities=26%  Similarity=0.136  Sum_probs=35.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      .+++||.++|.|-|.-+|+-++.-|.++|+.|.+++.+.
T Consensus        58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~   96 (197)
T cd01079          58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDING   96 (197)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCc
Confidence            479999999999999999999999999999999997543

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=95.50  E-value=0.056  Score=46.48  Aligned_cols=79  Identities=22%  Similarity=0.313  Sum_probs=51.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+.+++|.|+++++|.++++.+...|++|+++.++.++.+.. +++     +.. .++  |..+...... +.+... ..
T Consensus       138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~-~~~--~~~~~~~~~~-~~~~~~-~~  206 (323)
T cd05282         138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEEL-KAL-----GAD-EVI--DSSPEDLAQR-VKEATG-GA  206 (323)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHH-Hhc-----CCC-EEe--cccchhHHHH-HHHHhc-CC
Confidence            578999999999999999999999999999988887654333 222     211 112  2233222222 222211 23


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|+++.+.|
T Consensus       207 ~~d~vl~~~g  216 (323)
T cd05282         207 GARLALDAVG  216 (323)
T ss_pred             CceEEEECCC
Confidence            5899998887

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=95.50  E-value=0.24  Score=44.51  Aligned_cols=80  Identities=16%  Similarity=0.214  Sum_probs=47.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .+.+++| +|.|+||..+++.+...|++++++ +++.++++. .+++     +..  .  +|....+++...+.++.. .
T Consensus       185 ~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~-a~~~-----Ga~--~--v~~~~~~~~~~~v~~~~~-~  252 (393)
T TIGR02819       185 PGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQ-ARSF-----GCE--T--VDLSKDATLPEQIEQILG-E  252 (393)
T ss_pred             CCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHH-HHHc-----CCe--E--EecCCcccHHHHHHHHcC-C
Confidence            5789999 556999999988888899985554 455433322 2222     332  1  233322223333333322 1


Q ss_pred             CCeeEEEEccCCC
Q 025275          107 RPLNILINNAGIM  119 (255)
Q Consensus       107 g~id~lv~~ag~~  119 (255)
                      ..+|++|.++|..
T Consensus       253 ~g~Dvvid~~G~~  265 (393)
T TIGR02819       253 PEVDCAVDCVGFE  265 (393)
T ss_pred             CCCcEEEECCCCc
Confidence            3589999999964

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN02928 oxidoreductase family protein

Probab=95.50  E-value=0.099  Score=46.21  Aligned_cols=38  Identities=29%  Similarity=0.316  Sum_probs=34.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      .++.||++.|.|- |.||+++|+.|...|++|+..+|+.
T Consensus       155 ~~l~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~~  192 (347)
T PLN02928        155 DTLFGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRSW  192 (347)
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCC
Confidence            5689999999997 8999999999999999999998874

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.49  E-value=0.042  Score=47.00  Aligned_cols=42  Identities=29%  Similarity=0.354  Sum_probs=36.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA   65 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~   65 (255)
                      ..++.||.++|.|.|.-+|+-++.-|.++|++|.++.+....
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~  194 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRD  194 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCC
Confidence            467899999999999999999999999999999887654433

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=95.49  E-value=0.032  Score=45.27  Aligned_cols=74  Identities=19%  Similarity=0.142  Sum_probs=47.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-HHHHHHHHHhhC---------CCCceEEEEeCCCCHHHHHHHHH
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-GKDVREAIVKEI---------PSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-~~~~~~~~~~~~---------~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      +....||+|.||.+++++|++.|++|++.+|+.++ .....+.+....         ....+.++-+-   .+.+..+++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP---~~a~~~v~~   78 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVP---FEAIPDVLA   78 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEecc---HHHHHhHHH
Confidence            35567889999999999999999999999666554 444444442221         02334444433   345666777


Q ss_pred             HHhcCCC
Q 025275          101 EYNSQGR  107 (255)
Q Consensus       101 ~~~~~~g  107 (255)
                      ++....+
T Consensus        79 ~l~~~~~   85 (211)
T COG2085          79 ELRDALG   85 (211)
T ss_pred             HHHHHhC
Confidence            7766554

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=95.48  E-value=0.12  Score=44.97  Aligned_cols=83  Identities=19%  Similarity=0.274  Sum_probs=52.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCH--HHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL--ASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~--~si~~~~~~~~~~  105 (255)
                      .+.+++|.|+++++|.++++.+...|++|+++.++.+..++..+.+...  +.. .++.  -.+.  .+....+......
T Consensus       146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~--g~~-~~~~--~~~~~~~~~~~~i~~~~~~  220 (341)
T cd08290         146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKAL--GAD-HVLT--EEELRSLLATELLKSAPGG  220 (341)
T ss_pred             CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhc--CCC-EEEe--CcccccccHHHHHHHHcCC
Confidence            5789999999999999999999999999888887764322333333222  222 1221  1111  0233333333222


Q ss_pred             CCCeeEEEEccC
Q 025275          106 GRPLNILINNAG  117 (255)
Q Consensus       106 ~g~id~lv~~ag  117 (255)
                        .+|+++.+.|
T Consensus       221 --~~d~vld~~g  230 (341)
T cd08290         221 --RPKLALNCVG  230 (341)
T ss_pred             --CceEEEECcC
Confidence              5899999887

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=95.42  E-value=0.12  Score=45.83  Aligned_cols=78  Identities=15%  Similarity=0.226  Sum_probs=51.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCH-HHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL-ASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~si~~~~~~~~~~  105 (255)
                      .|.+++|.|+ |++|...++.+...|+ +|++++++.++.+.+ +++     +.. .++  |..+. +++.+.+.++...
T Consensus       187 ~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~-~~~-----Ga~-~~i--~~~~~~~~~~~~v~~~~~~  256 (369)
T cd08301         187 KGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA-KKF-----GVT-EFV--NPKDHDKPVQEVIAEMTGG  256 (369)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc-----CCc-eEE--cccccchhHHHHHHHHhCC
Confidence            5789999985 8999998888888998 799998887654433 222     221 122  33321 2454555554332


Q ss_pred             CCCeeEEEEccC
Q 025275          106 GRPLNILINNAG  117 (255)
Q Consensus       106 ~g~id~lv~~ag  117 (255)
                        .+|+++.+.|
T Consensus       257 --~~d~vid~~G  266 (369)
T cd08301         257 --GVDYSFECTG  266 (369)
T ss_pred             --CCCEEEECCC
Confidence              6999999987

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.40  E-value=0.043  Score=47.22  Aligned_cols=40  Identities=33%  Similarity=0.375  Sum_probs=36.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEE-ecc
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV-RNM   63 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~-r~~   63 (255)
                      ..+++||.++|.|-++-+|+.+|..|+++|+.|.++. |+.
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~  193 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR  193 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC
Confidence            4578999999999999999999999999999999995 553

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=95.38  E-value=0.15  Score=43.90  Aligned_cols=80  Identities=14%  Similarity=0.245  Sum_probs=50.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+.+++|.|+++++|..+++.+...|+.++++.++.++.+.+ .++     +.. .++  |..+.+.....+.+... ..
T Consensus       140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~-~~~--~~~~~~~~~~~~~~~~~-~~  209 (334)
T PTZ00354        140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC-KKL-----AAI-ILI--RYPDEEGFAPKVKKLTG-EK  209 (334)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCc-EEE--ecCChhHHHHHHHHHhC-CC
Confidence            478999999999999999999999999988888776554333 221     221 122  22222212222332221 13


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .+|+++++.|
T Consensus       210 ~~d~~i~~~~  219 (334)
T PTZ00354        210 GVNLVLDCVG  219 (334)
T ss_pred             CceEEEECCc
Confidence            5899998876

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=95.38  E-value=0.13  Score=45.95  Aligned_cols=41  Identities=20%  Similarity=0.339  Sum_probs=34.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKD   68 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~   68 (255)
                      .+.+++|+|++|++|.+++..+...|++++++.++.++.+.
T Consensus       193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~  233 (393)
T cd08246         193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEY  233 (393)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence            47899999999999999998888899998888877665443

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.37  E-value=0.015  Score=41.94  Aligned_cols=38  Identities=24%  Similarity=0.397  Sum_probs=32.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      ++++|+.+||.|| |.+|..=++.|++.|++|.+++...
T Consensus         3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             E--TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence            5789999999999 8999999999999999999998875

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.33  E-value=0.056  Score=46.17  Aligned_cols=42  Identities=38%  Similarity=0.485  Sum_probs=37.4

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA   65 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~   65 (255)
                      ..+++||.++|.|-|.-+|+-++.-|.++|++|.++.+....
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~  195 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKN  195 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCC
Confidence            457899999999999999999999999999999999766543

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=95.31  E-value=0.068  Score=44.00  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=30.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      ...+.||.|.+|+.|++++...||.|+-.+|+..
T Consensus         4 k~~vfgg~gflg~~ic~~a~~sgy~vvsvsrsga   37 (283)
T KOG4288|consen    4 KLIVFGGNGFLGKRICQEAVTSGYQVVSVSRSGA   37 (283)
T ss_pred             cceeecccccchhhhhHHHHhcCceEEEeccccC
Confidence            4678999999999999999999999999988754

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.31  E-value=0.1  Score=45.09  Aligned_cols=75  Identities=12%  Similarity=0.167  Sum_probs=51.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHH-cCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCC-CHHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLAL-RGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS-SLASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~si~~~~~~~~~~  105 (255)
                      .|+++.|+|++| +| +++-++++ .|.+|++++++..+-++..+.+.+.       ++ +|.+ |++.++++.+..   
T Consensus       181 pG~~vgI~GlGG-LG-h~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd-------~f-v~~~~d~d~~~~~~~~~---  247 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LG-HMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD-------VF-VDSTEDPDIMKAIMKTT---  247 (360)
T ss_pred             CCcEEEEecCcc-cc-hHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc-------ee-EEecCCHHHHHHHHHhh---
Confidence            699999999998 99 55555555 6999999999987767766665332       22 3666 777777776643   


Q ss_pred             CCCeeEEEEc
Q 025275          106 GRPLNILINN  115 (255)
Q Consensus       106 ~g~id~lv~~  115 (255)
                      .+.+|.+.|.
T Consensus       248 dg~~~~v~~~  257 (360)
T KOG0023|consen  248 DGGIDTVSNL  257 (360)
T ss_pred             cCcceeeeec
Confidence            2344555444

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=95.23  E-value=0.12  Score=46.02  Aligned_cols=75  Identities=13%  Similarity=0.260  Sum_probs=48.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.+++|.|+ |++|...++.....|++|++++++.++..+..+++     +.. .++  |..+.+.+..    .   .+
T Consensus       178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~l-----Ga~-~~i--~~~~~~~v~~----~---~~  241 (375)
T PLN02178        178 SGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRL-----GAD-SFL--VTTDSQKMKE----A---VG  241 (375)
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhC-----CCc-EEE--cCcCHHHHHH----h---hC
Confidence            5789999986 89999998888889999999887765433333332     221 122  3333222222    1   13


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      .+|+++.++|.
T Consensus       242 ~~D~vid~~G~  252 (375)
T PLN02178        242 TMDFIIDTVSA  252 (375)
T ss_pred             CCcEEEECCCc
Confidence            58999998873

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=95.21  E-value=0.12  Score=43.94  Aligned_cols=84  Identities=18%  Similarity=0.268  Sum_probs=64.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +|.+++--||++++|+++.+-....|.+-|-+.|+.+..+++.++++..  +....+-+-.+.+.     -+......++
T Consensus       160 ~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~l--GA~~ViTeeel~~~-----~~~k~~~~~~  232 (354)
T KOG0025|consen  160 KGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSL--GATEVITEEELRDR-----KMKKFKGDNP  232 (354)
T ss_pred             CCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHc--CCceEecHHHhcch-----hhhhhhccCC
Confidence            6889999999999999999888889999888899999999999999886  44434433333332     2232233567


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++-..+||.|.
T Consensus       233 ~prLalNcVGG  243 (354)
T KOG0025|consen  233 RPRLALNCVGG  243 (354)
T ss_pred             CceEEEeccCc
Confidence            88999999984

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.21  E-value=0.1  Score=45.99  Aligned_cols=34  Identities=38%  Similarity=0.450  Sum_probs=30.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN   62 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~   62 (255)
                      .|++++|+|+ |++|...++-+...|++|++++|+
T Consensus       172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~  205 (355)
T cd08230         172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRR  205 (355)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Confidence            5789999986 999999988888889999999984

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=95.19  E-value=0.18  Score=43.94  Aligned_cols=75  Identities=20%  Similarity=0.404  Sum_probs=48.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.+++|+|++|++|.++++.....|++|+.+.++ ++ .+..+++     +.. ..  .|..+.+..+.+.    . .+
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~-~~~~~~~-----g~~-~~--~~~~~~~~~~~l~----~-~~  226 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DA-IPLVKSL-----GAD-DV--IDYNNEDFEEELT----E-RG  226 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-ch-HHHHHHh-----CCc-eE--EECCChhHHHHHH----h-cC
Confidence            38999999999999999999999999998887754 22 2222222     221 12  2334433333222    1 24


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .+|+++.+.|
T Consensus       227 ~vd~vi~~~g  236 (350)
T cd08248         227 KFDVILDTVG  236 (350)
T ss_pred             CCCEEEECCC
Confidence            6999999887

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=95.17  E-value=0.12  Score=44.76  Aligned_cols=42  Identities=33%  Similarity=0.458  Sum_probs=36.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV   69 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~   69 (255)
                      .+.+++|.|+++.+|.++++.+...|+.|+.+.++.++.+..
T Consensus       162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~  203 (334)
T PRK13771        162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIV  203 (334)
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            478999999999999999999999999999998887665443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=95.16  E-value=0.18  Score=36.13  Aligned_cols=76  Identities=18%  Similarity=0.189  Sum_probs=55.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHH--cCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLAL--RGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~--~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++++|-.|++.|   .++..|++  .|++|+.++.+++.++...+...+.....++.++..|+ ...         ...
T Consensus         1 p~~~vLDlGcG~G---~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~---------~~~   67 (112)
T PF12847_consen    1 PGGRVLDLGCGTG---RLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFD---------PDF   67 (112)
T ss_dssp             TTCEEEEETTTTS---HHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGG---------TTT
T ss_pred             CCCEEEEEcCcCC---HHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccC---------ccc
Confidence            3678899998887   55666666  78899999999988877777775544467999999998 110         111


Q ss_pred             CCCeeEEEEcc
Q 025275          106 GRPLNILINNA  116 (255)
Q Consensus       106 ~g~id~lv~~a  116 (255)
                      .+++|+++...
T Consensus        68 ~~~~D~v~~~~   78 (112)
T PF12847_consen   68 LEPFDLVICSG   78 (112)
T ss_dssp             SSCEEEEEECS
T ss_pred             CCCCCEEEECC
Confidence            23589998777

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	255
3rd5_A	291	Crystal Structure Of A Putative Uncharacterized Pro		3e-26
3u5t_A	267	The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr		8e-09
3rku_A	287	Substrate Fingerprint And The Structure Of Nadp+ De		1e-08
3sj7_A	252	Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) F		3e-08
3f9i_A	249	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		7e-08
3tfo_A	264	Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Car		9e-08
3osu_A	246	Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Pro		1e-07
2gdz_A	267	Crystal Structure Of 15-Hydroxyprostaglandin Dehydr		2e-07
2c07_A	285	Oxoacyl-Acp Reductase Of Plasmodium Falciparum Leng		3e-07
1k2w_A	256	Crystal Structure Of Sorbitol Dehydrogenase From R.		3e-07
1xhl_A	297	Crystal Structure Of Putative Tropinone Reductase-I		5e-07
3nug_A	247	Crystal Structure Of Wild Type Tetrameric Pyridoxal		6e-07
3pk0_A	262	Crystal Structure Of Short-Chain DehydrogenaseREDUC		8e-07
2rhr_B	277	P94l Actinorhodin Ketordeuctase Mutant, With Nadph		1e-06
3lyl_A	247	Structure Of 3-Oxoacyl-Acylcarrier Protein Reductas		1e-06
3csd_B	281	Actinorhodin Polyketide Ketoreductase Mutant P94l B		1e-06
2ew8_A	249	Crystal Structure Of The (s)-specific 1-phenylethan		1e-06
4e3z_A	272	Crystal Structure Of A Oxidoreductase From Rhizobiu		2e-06
4dc0_A	281	Crystal Structure Of F189w Actinorhodin Polyketide		3e-06
2cf2_E	226	Architecture Of Mammalian Fatty Acid Synthase Lengt		3e-06
2rh4_A	277	Actinorhodin Ketoreductase, Actkr, With Nadph And I		3e-06
4dc1_A	281	Crystal Structure Of Y202f Actinorhodin Polyketide		4e-06
1w4z_A	281	Structure Of Actinorhodin Polyketide (Actiii) Reduc		4e-06
1x7g_A	261	Actinorhodin Polyketide Ketoreductase, Act Kr, With		4e-06
4dbz_A	281	Crystal Structure Of V151l Actinorhodin Polyketide		4e-06
2hrb_A	274	Crystal Structure Of Human Carbonyl Reductase 3, Co		4e-06
3ndr_A	247	Crystal Structure Of Tetrameric Pyridoxal 4-Dehydro		5e-06
3uf0_A	273	Crystal Structure Of A Putative Nad(P) Dependent Gl		6e-06
2uvd_A	246	The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier		6e-06
3sju_A	279	Hedamycin Polyketide Ketoreductase Bound To Nadph L		7e-06
2b4q_A	276	Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex		7e-06
1i01_A	244	Crystal Structure Of Beta-Ketoacyl [acyl Carrier Pr		7e-06
1q7c_A	244	The Structure Of Betaketoacyl-[acp] Reductase Y151f		8e-06
3tzh_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		1e-05
1xg5_A	279	Structure Of Human Putative Dehydrogenase Mgc4172 I		1e-05
4g81_D	255	Crystal Structure Of A Hexonate Dehydrogenase Ortho		1e-05
1wmb_A	260	Crystal Structure Of Nad Dependent D-3-Hydroxybutyl		2e-05
1wma_A	276	Crystal Structure Of Human Cbr1 In Complex With Hyd		2e-05
3tzc_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		2e-05
2pfg_A	276	Crystal Structure Of Human Cbr1 In Complex With Big		3e-05
3rsh_A	251	Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reduc		3e-05
2pnf_A	248	Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-		3e-05
3v2g_A	271	Crystal Structure Of A DehydrogenaseREDUCTASE FROM		3e-05
1uzl_A	247	Maba From Mycobacterium Tuberculosis Length = 247		4e-05
3o26_A	311	The Structure Of Salutaridine Reductase From Papave		4e-05
1n5d_A	288	Crystal Structure Of Porcine Testicular Carbonyl Re		4e-05
1spx_A	278	Crystal Structure Of Glucose Dehydrogenase Of Caeno		4e-05
2fwm_X	250	Crystal Structure Of E. Coli Enta, A 2,3-Dihydrodih		4e-05
1uzm_A	247	Maba From Mycobacterium Tuberculosis Length = 247		5e-05
3nyw_A	250	Crystal Structure Of A Betaketoacyl-[acp] Reductase		5e-05
2ztm_A	260	T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase L		6e-05
2ntn_A	267	Crystal Structure Of Maba-c60v/g139a/s144l Length =		7e-05
2ztu_A	260	T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase C		8e-05
3lf1_A	265	Apo Structure Of The Short Chain Oxidoreductase Q9h		9e-05
4dml_A	269	3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Syn		1e-04
1hxh_A	253	Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID D		1e-04
1yo6_A	250	Crystal Structure Of The Putative Carbonyl Reductas		1e-04
2q2q_A	255	Structure Of D-3-Hydroxybutyrate Dehydrogenase From		1e-04
4ibo_A	271	Crystal Structure Of A Putative Gluconate Dehydroge		1e-04
3icc_A	255	Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Car		1e-04
1cyd_A	244	Carbonyl Reductase Complexed With Nadph And 2-Propa		2e-04
3ai3_A	263	The Crystal Structure Of L-Sorbose Reductase From G		2e-04
2hq1_A	247	Crystal Structure Of Orf 1438 A Putative GlucoseRIB		2e-04
3ai1_A	263	The Crystal Structure Of L-Sorbose Reductase From G		2e-04
3m1l_A	432	Crystal Strucutre Of A C-Terminal Trunacted Mutant		2e-04
3tzk_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		2e-04
3lls_A	475	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		2e-04
4fw8_A	454	Crystal Structure Of Fabg4 Complexed With Coenzyme		2e-04
3v1t_C	462	Crystal Structure Of A Putative Ketoacyl Reductase		2e-04
3rkr_A	262	Crystal Structure Of A Metagenomic Short-Chain Oxid		2e-04
3q6i_A	446	Crystal Structure Of Fabg4 And Coenzyme Binary Comp		2e-04
3u09_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		3e-04
3r1i_A	276	Crystal Structure Of A Short-Chain Type Dehydrogena		3e-04
4iqg_C	271	Crystal Structure Of Bpro0239 Oxidoreductase From P		3e-04
1ae1_A	273	Tropinone Reductase-I Complex With Nadp Length = 27		3e-04
4eso_A	255	Crystal Structure Of A Putative Oxidoreductase Prot		4e-04
3vc7_A	254	Crystal Structure Of A Putative Oxidoreductase From		4e-04
3ioy_A	319	Structure Of Putative Short-Chain Dehydrogenase (Sa		4e-04
2yz7_A	260	X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase F		4e-04
1pr9_A	244	Human L-Xylulose Reductase Holoenzyme Length = 244		4e-04
3qiv_A	253	Crystal Structure Of A Putative Short-Chain Dehydro		4e-04
1ipe_A	259	Tropinone Reductase-Ii Complexed With Nadph Length		5e-04
2ae2_A	260	Tropinone Reductase-Ii Complexed With Nadp+ And Pse		5e-04
3grp_A	266	2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl-		5e-04
1vl8_A	267	Crystal Structure Of Gluconate 5-dehydrogenase (tm0		5e-04
3ftp_A	270	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		5e-04
3o38_A	266	Crystal Structure Of A Short Chain Dehydrogenase Fr		6e-04
3d3w_A	244	Structure Of L-Xylulose Reductase With Bound Coenzy		6e-04
4hp8_A	247	Crystal Structure Of A Putative 2-Deoxy-D-Gluconate		7e-04

>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Paratuberculosis Length = 291

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/218 (38%), Positives = 113/218 (51%), Gaps = 22/218 (10%)
Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           T ++TGA+SG+G  TAR LA RG  VIMAVR+   G    EA  + + + +V+  ELD+ 
Sbjct: 18  TVVITGANSGLGAVTARELARRGATVIMAVRDTRKG----EAAARTM-AGQVEVRELDLQ 72
Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXD 150
            L+SVR+FA   +      ++LINNAGIMA P+ L+ D  E Q  TN             
Sbjct: 73  DLSSVRRFADGVSGA----DVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLP 128
Query: 151 TMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES-AYNSFGAYGQSKLANILHA 209
            +           R+V VSS AH   +   I  + +N  S  Y+ + AY QSKLAN+L  
Sbjct: 129 RLTD---------RVVTVSSMAH---WPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFT 176
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGD 247
            EL + L   G  + A + HPG   TNL   +G   GD
Sbjct: 177 SELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGD 214

>pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Sinorhizobium Meliloti Length = 267

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 29/210 (13%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM--ELDV 89
           AIVTGAS GIG   A  LA  G  V++   N A      E +  +I +A   A+  + DV
Sbjct: 30  AIVTGASRGIGAAIAARLASDGFTVVI---NYAGKAAAAEEVAGKIEAAGGKALTAQADV 86
Query: 90  SSLASVRK-FASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXX 148
           S  A+VR+ FA+   + G  +++L+NNAGI   P     +  +  F              
Sbjct: 87  SDPAAVRRLFATAEEAFGG-VDVLVNNAGI--XPLTTIAETGDAVF---DRVIAVNLKGT 140
Query: 149 XDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
            +T+++ AQ+    GRI+N S+      +                S+G Y  +K      
Sbjct: 141 FNTLREAAQRLRVGGRIINXSTSQVGLLHP---------------SYGIYAAAKAGVEAX 185
Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLF 238
              L+K L+  G +IT N++ PG   T+LF
Sbjct: 186 THVLSKELR--GRDITVNAVAPGPTATDLF 213

>pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 11/156 (7%)
Query: 31  TAIVTGASSGIGTETA--RVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           T ++TGAS+GIG  TA   + A  G + +I+A R +   +++++ I +E P+AKV   +L
Sbjct: 35  TVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQL 94
Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAG-IMASPFM--LSKDNIELQFATNXXXXXXX 144
           D++    ++ F      + + ++IL+NNAG  + S  +  ++ ++I+  F TN       
Sbjct: 95  DITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINI 154
Query: 145 XXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
                        ++   G IVN+ S A R AY  G
Sbjct: 155 TQAVLPIF-----QAKNSGDIVNLGSIAGRDAYPTG 185

>pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From Staphylococcus Aureus Complex With Nadph Length = 252

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 25/209 (11%)
Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD--AMELD 88
           +A+VTGAS GIG   A  LA  G +V +   N A  K+  EA+V+EI +  VD  A++ +
Sbjct: 12  SALVTGASRGIGRSIALQLAEEGYNVAV---NYAGSKEKAEAVVEEIKAKGVDSFAIQAN 68
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXX 148
           V+    V+    E  SQ   L++L+NNAGI     ++     E     +           
Sbjct: 69  VADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQ 128
Query: 149 XDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
             T +   Q+S   G I+N+SS               + +    N    Y  +K   I  
Sbjct: 129 KATPQMLRQRS---GAIINLSS-----------VVGAVGNPGQAN----YVATKAGVIGL 170
Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNL 237
            K  A+ L   G  IT N++ PG IV+++
Sbjct: 171 TKSAARELASRG--ITVNAVAPGFIVSDM 197

>pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase Rickettsia Prowazekii Length = 249

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 32/156 (20%)
Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
           ID TG T+++TGASSGIG+  AR+L   G  VI++  N        E  +K + +A  D 
Sbjct: 10  IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSN--------EEKLKSLGNALKDN 61
Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPF---MLSKD-------NIELQF 134
             ++V +LA+ ++  S   S+   L+IL+ NAGI +      M  +D       N++  F
Sbjct: 62  YTIEVCNLAN-KEECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANF 120
Query: 135 ATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSS 170
             N            + +KK  QK  R GRI+N+SS
Sbjct: 121 ILN-----------REAIKKMIQK--RYGRIINISS 143

>pdb|3TFO|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From Sinorhizobium Meliloti Length = 264

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 34/210 (16%)
Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAME--LDVS 90
           ++TGAS GIG   AR L + G  +++  R  A      EAI  EI  A   A+   LDV+
Sbjct: 8   LITGASGGIGEGIARELGVAGAKILLGARRQAR----IEAIATEIRDAGGTALAQVLDVT 63
Query: 91  SLASVRKFA-SEYNSQGRPLNILINNAGIMA-SPFMLSK-DNIELQFATNXXXXXXXXXX 147
              SV  FA +  ++ GR +++L+NNAG+M  SP    K D  E     N          
Sbjct: 64  DRHSVAAFAQAAVDTWGR-IDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGA 122
Query: 148 XXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
               M     ++ R G+I+N+ S               I   S   +   Y  +K A   
Sbjct: 123 VLPIM-----EAQRSGQIINIGS---------------IGALSVVPTAAVYCATKFA--- 159
Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVTNL 237
             + ++  L+++  NI    ++PG + + L
Sbjct: 160 -VRAISDGLRQESTNIRVTCVNPGVVESEL 188

>pdb|3OSU|A Chain A, Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Protein Reductase, Fabg, From Staphylococcus Aureus Length = 246

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 35/213 (16%)
Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD--AMELD 88
           +A+VTGAS GIG   A  LA  G +V +   N A  K+  EA+V+EI +  VD  A++ +
Sbjct: 6   SALVTGASRGIGRSIALQLAEEGYNVAV---NYAGSKEKAEAVVEEIKAKGVDSFAIQAN 62
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXX 148
           V+    V+    E  SQ   L++L+NNAGI     +      E     +           
Sbjct: 63  VADADEVKAXIKEVVSQFGSLDVLVNNAGITRDNLLXRXKEQEWDDVIDTNLKGVFNCIQ 122
Query: 149 XDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ-----SKL 203
             T +   Q+S   G I+N+S                    S   + G  GQ     +K 
Sbjct: 123 KATPQXLRQRS---GAIINLS--------------------SVVGAVGNPGQANYVATKA 159
Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTN 236
             I   K  A+ L   G  IT N++ PG IV++
Sbjct: 160 GVIGLTKSAARELASRG--ITVNAVAPGFIVSD 190

>pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase Type1, Complexed With Nad+ Length = 267

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A+VTGA+ GIG   A  L L+G  V +   N+ AG   + A+ ++    K   ++ D
Sbjct: 7   GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCD 66
Query: 89  VSSLASVRK-FASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXX 147
           V+    +R  F    +  GR L+IL+NNAG+       ++ N E     N          
Sbjct: 67  VADQQQLRDTFRKVVDHFGR-LDILVNNAGVN------NEKNWEKTLQINLVSVISGTYL 119
Query: 148 XXDTMKKTAQKSSREGRIVNVSSEA 172
             D M K  Q     G I+N+SS A
Sbjct: 120 GLDYMSK--QNGGEGGIIINMSSLA 142

>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum Length = 285

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 30/215 (13%)
Query: 27  GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAME 86
           G    A+VTGA  GIG E A++LA    HVI   R   +     +++V EI S   ++  
Sbjct: 42  GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSC----DSVVDEIKSFGYESSG 97
Query: 87  L--DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNXXXXX 142
              DVS    + +  ++  ++ + ++IL+NNAGI      L   N E +    TN     
Sbjct: 98  YAGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLF 157
Query: 143 XXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
                    M      ++R GRI+N+SS               I   +       Y  SK
Sbjct: 158 YITQPISKRM-----INNRYGRIINISS---------------IVGLTGNVGQANYSSSK 197
Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
              I   K LAK L     NIT N++ PG I +++
Sbjct: 198 AGVIGFTKSLAKELASR--NITVNAIAPGFISSDM 230

>pdb|1K2W|A Chain A, Crystal Structure Of Sorbitol Dehydrogenase From R. Sphaeroides Length = 256

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 28/207 (13%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G TA++TG++ GIG   A      G  V +A  N+ A +    A   EI  A   A+ LD
Sbjct: 5   GKTALITGSARGIGRAFAEAYVREGARVAIADINLEAAR----ATAAEIGPAAC-AIALD 59
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNXXXXXXXXX 146
           V+  AS+ +  +E   +   ++IL+NNA +  +A    +++++ +  FA N         
Sbjct: 60  VTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQ 119
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                M        R G+I+N++S+A R       R + +         G Y  +K A I
Sbjct: 120 AVARAMI----AGGRGGKIINMASQAGR-------RGEAL--------VGVYCATKAAVI 160
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSI 233
              +    +L   G+N+  N++ PG +
Sbjct: 161 SLTQSAGLNLIRHGINV--NAIAPGVV 185

>pdb|1XHL|A Chain A, Crystal Structure Of Putative Tropinone Reductase-Ii From Caenorhabditis Elegans With Cofactor And Substrate Length = 297

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 27/221 (12%)
Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE-IPSAKVDAME 86
           +G + I+TG+S+GIG   A + A  G  V +  RN    ++ ++ I+K  +P+ K++A+ 
Sbjct: 25  SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 84
Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDN-IEL---QFATNXXXXX 142
            DV+  +      +   ++   ++IL+NNAG   +    + D  +EL    F  N     
Sbjct: 85  ADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI 144
Query: 143 XXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
                  + + KT      +G IVNVSS               +    A++ +  Y  +K
Sbjct: 145 EMTQKTKEHLIKT------KGEIVNVSS--------------IVAGPQAHSGYPYYACAK 184
Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI 243
            A   + +  A  L + GV +  NS+ PG++ T      G+
Sbjct: 185 AALDQYTRCTAIDLIQHGVRV--NSVSPGAVATGFMGAMGL 223

>pdb|3NUG|A Chain A, Crystal Structure Of Wild Type Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 34/210 (16%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G TA+VTGA+ GIG   A  LA  G  VI++  N    K    +I K     K  A+  D
Sbjct: 6   GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGK-----KARAIAAD 60
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ-----FATNXXXXXX 143
           +S   SV+   +E  +    ++IL+NNA I+  PF ++ D+++L         N      
Sbjct: 61  ISDPGSVKALFAEIQALTGGIDILVNNASIV--PF-VAWDDVDLDHWRKIIDVNLTGTFI 117
Query: 144 XXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                 D M+     + + GR+++++S    FA +               +  AY  +K 
Sbjct: 118 VTRAGTDQMR----AAGKAGRVISIASNTF-FAGTP--------------NMAAYVAAKG 158
Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSI 233
             I   + LA  L +   NITAN++ PG I
Sbjct: 159 GVIGFTRALATELGK--YNITANAVTPGLI 186

>pdb|3PK0|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE SDR FROM Mycobacterium Smegmatis Length = 262

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 32/223 (14%)
Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM 85
           D  G + +VTG + GIG   A V A  G +V +A R+ A   D   A + ++ S KV  +
Sbjct: 7   DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTAD-IDACVADLDQLGSGKVIGV 65
Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPF-MLSKDNIELQFATNXXXXXX 143
           + DVS  A     A     +   ++++  NAG+   +P   ++ + +   FA N      
Sbjct: 66  QTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFY 125
Query: 144 XXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                 D +      +S  GR+V  SS                   + Y  +  YG +K 
Sbjct: 126 AVQACLDAL-----IASGSGRVVLTSSITGPI--------------TGYPGWSHYGATKA 166
Query: 204 ANI----LHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG 242
           A +      A ELA H       IT N++ PG+I+T     NG
Sbjct: 167 AQLGFMRTAAIELAPH------KITVNAIMPGNIMTEGLLENG 203

>pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And Inhibitor Emodin Length = 277

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 24/208 (11%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV--DAMELDV 89
           A+VTGA+SGIG E AR L   G+ V +  R    G++     +KE+  A V  D    DV
Sbjct: 25  ALVTGATSGIGLEIARRLGKEGLRVFVCAR----GEEGLRTTLKELREAGVEADGRTCDV 80
Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXX 149
            S+  +    +    +  P+++L+NNAG +         + EL                 
Sbjct: 81  RSVPEIEALVAAVVERYGPVDVLVNNAGRLGGGATAELAD-ELWLDVVETNLTGVFRVTK 139
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             +K         GRIVN++S   +    +G+                Y  SK   +   
Sbjct: 140 QVLKAGGMLERGTGRIVNIASTGGK----QGVVHAA-----------PYSASKHGVVGFT 184
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNL 237
           K L   L   G  IT N++ PG + T +
Sbjct: 185 KALGLELARTG--ITVNAVCPGFVETPM 210

>pdb|3LYL|A Chain A, Structure Of 3-Oxoacyl-Acylcarrier Protein Reductase, Fabg From Francisella Tularensis Length = 247

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 89/210 (42%), Gaps = 32/210 (15%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           A+VTGAS GIG E A  LA +G  V+    + A+ +   E   KE    K   + L++S 
Sbjct: 8   ALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKF-ENSXKE-KGFKARGLVLNISD 65
Query: 92  LASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDT 151
           + S++ F +E  ++   ++IL+NNAGI            E Q   N            + 
Sbjct: 66  IESIQNFFAEIKAENLAIDILVNNAGITRDNLXXRXSEDEWQSVIN-TNLSSIFRXSKEC 124
Query: 152 MKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQS-----KLANI 206
           ++   +K  R GRI+++                     S   S G  GQ+     K   I
Sbjct: 125 VRGXXKK--RWGRIISIG--------------------SVVGSAGNPGQTNYCAAKAGVI 162
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTN 236
             +K LA  +     NIT N + PG I T+
Sbjct: 163 GFSKSLAYEVASR--NITVNVVAPGFIATD 190

>pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To Nadph And The Inhibitor Emodin Length = 281

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 24/208 (11%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV--DAMELDV 89
           A+VTGA+SGIG E AR L   G+ V +  R    G++     +KE+  A V  D    DV
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCAR----GEEGLRTTLKELREAGVEADGRTCDV 84
Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXX 149
            S+  +    +    +  P+++L+NNAG +         + EL                 
Sbjct: 85  RSVPEIEALVAAVVERYGPVDVLVNNAGRLGGGATAELAD-ELWLDVVETNLTGVFRVTK 143
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             +K         GRIVN++S   +    +G+                Y  SK   +   
Sbjct: 144 QVLKAGGMLERGTGRIVNIASTGGK----QGVVHAA-----------PYSASKHGVVGFT 188
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNL 237
           K L   L   G  IT N++ PG + T +
Sbjct: 189 KALGLELARTG--ITVNAVCPGFVETPM 214

>pdb|2EW8|A Chain A, Crystal Structure Of The (s)-specific 1-phenylethanol Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1 Length = 249

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 28/206 (13%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           A++TG ++GIG   A   A+ G  +  A+ ++    +  EA ++ +   +V  ++ DVS 
Sbjct: 10  AVITGGANGIGRAIAERFAVEGADI--AIADLVPAPEA-EAAIRNL-GRRVLTVKCDVSQ 65
Query: 92  LASVRKFASEYNSQGRPLNILINNAGIMAS-PF-MLSKDNIELQFATNXXXXXXXXXXXX 149
              V  F  +  S     +IL+NNAGI    PF  L+ +  +  F  N            
Sbjct: 66  PGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFV 125
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             MK+        GRI+N++S  +           KI   + Y S      +K ANI   
Sbjct: 126 PGMKRNGW-----GRIINLTSTTYWL---------KIEAYTHYIS------TKAANIGFT 165
Query: 210 KELAKHLKEDGVNITANSLHPGSIVT 235
           + LA  L +DG  IT N++ P  + T
Sbjct: 166 RALASDLGKDG--ITVNAIAPSLVRT 189

>pdb|4E3Z|A Chain A, Crystal Structure Of A Oxidoreductase From Rhizobium Etli Cfn 42 Length = 272

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 22/214 (10%)
Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL--DVS 90
           +VTG S GIG    R+ A +G  V +   N AA ++  +A+V  I  +  +A+ +  DV 
Sbjct: 30  LVTGGSRGIGAAVCRLAARQGWRVGV---NYAANREAADAVVAAITESGGEAVAIPGDVG 86
Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIE-LQFATNXXXXXXXXXXXX 149
           + A +    S  + Q   L+ L+NNAGI+  P  + + ++E ++                
Sbjct: 87  NAADIAAXFSAVDRQFGRLDGLVNNAGIVDYPQRVDEXSVERIERXLRVNVTGSILCAAE 146
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
              + +   S + G IVNVSS A     +                +  Y  SK A     
Sbjct: 147 AVRRXSRLYSGQGGAIVNVSSXAAILGSA--------------TQYVDYAASKAAIDTFT 192
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI 243
             LA+ +  +G+ +  N++ PG I T+L    G+
Sbjct: 193 IGLAREVAAEGIRV--NAVRPGIIETDLHASGGL 224

>pdb|4DC0|A Chain A, Crystal Structure Of F189w Actinorhodin Polyketide Ketoreductase With Nadph Length = 281

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 82/208 (39%), Gaps = 24/208 (11%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV--DAMELDV 89
           A+VTGA+SGIG E AR L   G+ V +  R    G++     +KE+  A V  D    DV
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCAR----GEEGLRTTLKELREAGVEADGRTCDV 84
Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXX 149
            S+  +    +    +  P+++L+NNAG           + EL                 
Sbjct: 85  RSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELAD-ELWLDVVETNLTGVFRVTK 143
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             +K         GRIVN++S   +    +G+                Y  SK   +   
Sbjct: 144 QVLKAGGMLERGTGRIVNIASTGGK----QGVVHAA-----------PYSASKHGVVGFT 188
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNL 237
           K L   L   G  IT N++ PG + T +
Sbjct: 189 KALGLELARTG--ITVNAVCPGWVETPM 214

>pdb|2CF2|E Chain E, Architecture Of Mammalian Fatty Acid Synthase Length = 226

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 88/218 (40%), Gaps = 38/218 (17%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A+VTGAS GIG   A  LA RG  VI      A  ++  +AI  +   A    + L+
Sbjct: 5   GKIALVTGASRGIGRAIAETLAARGAKVI----GTATSENGAQAI-SDYLGANGKGLMLN 59
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNXXXXXXXXX 146
           V+  AS+     +  ++   ++IL+NNAGI     ++   + E      TN         
Sbjct: 60  VTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSK 119
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                M K      R GRI+ +  +A+                        Y  +K   I
Sbjct: 120 AVMRAMMK-----KRHGRIITIGGQAN------------------------YAAAKAGLI 150
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGIL 244
             +K LA+ +   G  IT N + PG I T+  +  GIL
Sbjct: 151 GFSKSLAREVASRG--ITVNVVAPGFIETSDDQRAGIL 186

>pdb|2RH4|A Chain A, Actinorhodin Ketoreductase, Actkr, With Nadph And Inhibitor Emodin Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 82/208 (39%), Gaps = 24/208 (11%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV--DAMELDV 89
           A+VTGA+SGIG E AR L   G+ V +  R    G++     +KE+  A V  D    DV
Sbjct: 25  ALVTGATSGIGLEIARRLGKEGLRVFVCAR----GEEGLRTTLKELREAGVEADGRTCDV 80
Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXX 149
            S+  +    +    +  P+++L+NNAG           + EL                 
Sbjct: 81  RSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELAD-ELWLDVVETNLTGVFRVTK 139
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             +K         GRIVN++S   +    +G+                Y  SK   +   
Sbjct: 140 QVLKAGGMLERGTGRIVNIASTGGK----QGVVHAA-----------PYSASKHGVVGFT 184
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNL 237
           K L   L   G  IT N++ PG + T +
Sbjct: 185 KALGLELARTG--ITVNAVCPGFVETPM 210

>pdb|4DC1|A Chain A, Crystal Structure Of Y202f Actinorhodin Polyketide Ketoreductase With Nadph Length = 281

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 82/208 (39%), Gaps = 24/208 (11%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV--DAMELDV 89
           A+VTGA+SGIG E AR L   G+ V +  R    G++     +KE+  A V  D    DV
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCAR----GEEGLRTTLKELREAGVEADGRTCDV 84
Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXX 149
            S+  +    +    +  P+++L+NNAG           + EL                 
Sbjct: 85  RSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELAD-ELWLDVVETNLTGVFRVTK 143
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             +K         GRIVN++S   +    +G+                Y  SK   +   
Sbjct: 144 QVLKAGGMLERGTGRIVNIASTGGK----QGVVHAA-----------PYSASKHGVVGFT 188
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNL 237
           K L   L   G  IT N++ PG + T +
Sbjct: 189 KALGLELARTG--ITVNAVCPGFVETPM 214

>pdb|1W4Z|A Chain A, Structure Of Actinorhodin Polyketide (Actiii) Reductase Length = 281

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 82/208 (39%), Gaps = 24/208 (11%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV--DAMELDV 89
           A+VTGA+SGIG E AR L   G+ V +  R    G++     +KE+  A V  D    DV
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCAR----GEEGLRTTLKELREAGVEADGRTCDV 84
Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXX 149
            S+  +    +    +  P+++L+NNAG           + EL                 
Sbjct: 85  RSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELAD-ELWLDVVETNLTGVFRVTK 143
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             +K         GRIVN++S   +    +G+                Y  SK   +   
Sbjct: 144 QVLKAGGMLERGTGRIVNIASTGGK----QGVVHAA-----------PYSASKHGVVGFT 188
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNL 237
           K L   L   G  IT N++ PG + T +
Sbjct: 189 KALGLELARTG--ITVNAVCPGFVETPM 214

>pdb|1X7G|A Chain A, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp Bound Length = 261

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 82/208 (39%), Gaps = 24/208 (11%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV--DAMELDV 89
           A+VTGA+SGIG E AR L   G+ V +  R    G++     +KE+  A V  D    DV
Sbjct: 9   ALVTGATSGIGLEIARRLGKEGLRVFVCAR----GEEGLRTTLKELREAGVEADGRTCDV 64
Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXX 149
            S+  +    +    +  P+++L+NNAG           + EL                 
Sbjct: 65  RSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELAD-ELWLDVVETNLTGVFRVTK 123
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             +K         GRIVN++S   +    +G+                Y  SK   +   
Sbjct: 124 QVLKAGGMLERGTGRIVNIASTGGK----QGVVHAA-----------PYSASKHGVVGFT 168
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNL 237
           K L   L   G  IT N++ PG + T +
Sbjct: 169 KALGLELARTG--ITVNAVCPGFVETPM 194

>pdb|4DBZ|A Chain A, Crystal Structure Of V151l Actinorhodin Polyketide Ketoreductase With Nadph Length = 281

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 79/208 (37%), Gaps = 24/208 (11%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV--DAMELDV 89
           A+VTGA+SGIG E AR L   G+ V +  R    G++     +KE+  A V  D    DV
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCAR----GEEGLRTTLKELREAGVEADGRTCDV 84
Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXX 149
            S+  +    +    +  P+++L+NNAG           + EL                 
Sbjct: 85  RSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELAD-ELWLDVVETNLTGVFRVTK 143
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
             +K         GRIVN++S                  +        Y  SK   +   
Sbjct: 144 QVLKAGGMLERGTGRIVNIAS---------------TGGKQGLVHAAPYSASKHGVVGFT 188
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNL 237
           K L   L   G  IT N++ PG + T +
Sbjct: 189 KALGLELARTG--ITVNAVCPGFVETPM 214

>pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed With Nadp+ Length = 274

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 93/241 (38%), Gaps = 46/241 (19%)
Query: 31  TAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV 89
            A+VTGA+ GIG   AR L  +    V++  R++A G+   + +  E  S +    +LD+
Sbjct: 4   VALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQAEGLSPRF--HQLDI 61
Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIM-----ASPFMLSKDNIELQFATNXXXXXXX 144
             L S+R        +   LN+L+NNA +        PF +     E+   TN       
Sbjct: 62  DDLQSIRALRDFLRKEYGGLNVLVNNAAVAFKSDDPMPFDIKA---EMTLKTNFFATRNM 118
Query: 145 XXXXXDTMKKTAQKSSREGRIVNVSS----------------EAHRFAYSEGIRFDKIND 188
                  MK         GR+VN+SS                  H    +EG   D +  
Sbjct: 119 CNELLPIMKP-------HGRVVNISSLQCLRAFENCSEDLQERFHSETLTEGDLVDLMKK 171
Query: 189 --ESAYNSF--------GAYGQSKLANILHAKELAKHL--KEDGVNITANSLHPGSIVTN 236
             E   N            YG SKL   + ++ LA+ L  K     I  N+  PG + T+
Sbjct: 172 FVEDTKNEVHEREGWPNSPYGVSKLGVTVLSRILARRLDEKRKADRILVNACCPGPVKTD 231
Query: 237 L 237
           +
Sbjct: 232 M 232

>pdb|3NDR|A Chain A, Crystal Structure Of Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 34/210 (16%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G TA+VTGA+ GIG   A  LA  G  VI++  N    K    +I K     K  A+  D
Sbjct: 6   GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGK-----KARAIAAD 60
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ-----FATNXXXXXX 143
           +S   SV+   +E  +    ++IL+NNA I+  PF+ + D+++L         N      
Sbjct: 61  ISDPGSVKALFAEIQALTGGIDILVNNASIV--PFV-AWDDVDLDHWRKIIDVNLTGTFI 117
Query: 144 XXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                 D  +     + + GR+++++S    FA +               +  AY  +K 
Sbjct: 118 VTRAGTDQXR----AAGKAGRVISIASNTF-FAGTP--------------NXAAYVAAKG 158
Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSI 233
             I   + LA  L +   NITAN++ PG I
Sbjct: 159 GVIGFTRALATELGK--YNITANAVTPGLI 186

>pdb|3UF0|A Chain A, Crystal Structure Of A Putative Nad(P) Dependent Gluconate 5- Dehydrogenase From Beutenbergia Cavernae(Efi Target Efi-502044) With Bound Nadp (Low Occupancy) Length = 273

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 86/207 (41%), Gaps = 24/207 (11%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G TA+VTGA SGIG   A   A  G HV+   R     K+V + I     SA  +A+  D
Sbjct: 31  GRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGV-KEVADEIADGGGSA--EAVVAD 87
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXX 148
           ++ L      A E  +  R +++L+NNAGI+A       + + L                
Sbjct: 88  LADLEGAANVAEELAAT-RRVDVLVNNAGIIARA---PAEEVSLGRWREVLTVNLDAAWV 143
Query: 149 XDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
                 TA  +   GRIV ++S     ++  G             +  AY  SK A +  
Sbjct: 144 LSRSFGTAMLAHGSGRIVTIAS---MLSFQGG------------RNVAAYAASKHAVVGL 188
Query: 209 AKELAKHLKEDGVNITANSLHPGSIVT 235
            + LA      GV +  N+L PG +VT
Sbjct: 189 TRALASEWAGRGVGV--NALAPGYVVT 213

>pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis (Ba3989) Length = 246

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 29/213 (13%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL- 87
           G  A+VTGAS GIG   A  LA +G +V++   N A  +     +V EI     DA+ + 
Sbjct: 4   GKVALVTGASRGIGRAIAIDLAKQGANVVV---NYAGNEQKANEVVDEIKKLGSDAIAVR 60
Query: 88  -DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNXXXXXXX 144
            DV++   V     +       ++IL+NNAG+     +  + ++  +    TN       
Sbjct: 61  ADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLC 120
Query: 145 XXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
                  M +      R GRIVN++S         G+  +           G  G +K +
Sbjct: 121 TKAVSRFMMR-----QRHGRIVNIASVV-------GVTGNPGQANYVAAKAGVIGLTKTS 168
Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
               AKELA        NIT N++ PG I T++
Sbjct: 169 ----AKELASR------NITVNAIAPGFIATDM 191

>pdb|3SJU|A Chain A, Hedamycin Polyketide Ketoreductase Bound To Nadph Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 24/209 (11%)
Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELD 88
           TA VTG SSGIG   AR LA RG+ V    R+    K+V  A V  + +A   VD    D
Sbjct: 26  TAFVTGVSSGIGLAVARTLAARGIAVYGCARDA---KNV-SAAVDGLRAAGHDVDGSSCD 81
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXX 148
           V+S   V    +    +  P+ IL+N+AG          D+  L                
Sbjct: 82  VTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDD-ALWADVLDTNLTGVFRVT 140
Query: 149 XDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
            + ++    + +  GRIVN++S   +    +G+ +              Y  SK   +  
Sbjct: 141 REVLRAGGMREAGWGRIVNIASTGGK----QGVMYAA-----------PYTASKHGVVGF 185
Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNL 237
            K +   L + G  IT N++ PG + T +
Sbjct: 186 TKSVGFELAKTG--ITVNAVCPGYVETPM 212

>pdb|2B4Q|A Chain A, Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex Length = 276

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 86/214 (40%), Gaps = 22/214 (10%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A+VTG S GIG   A+ L   G  V +  R+  A  D    +          A+  D
Sbjct: 29  GRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY---GDCQAIPAD 85
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKD--NIELQFATNXXXXXXXXX 146
           +SS A  R+ A         L+IL+NNAG      + S      E     N         
Sbjct: 86  LSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQ 145
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                ++++A  +    R++N+ S A       GI       E AY    AYG SK A  
Sbjct: 146 QLLPLLRRSA-SAENPARVINIGSVA-------GI---SAMGEQAY----AYGPSKAALH 190
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY 240
             ++ LAK L  + +N+  N + PG   + + R+
Sbjct: 191 QLSRMLAKELVGEHINV--NVIAPGRFPSRMTRH 222

>pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein] Reductase From E. Coli. Length = 244

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 86/213 (40%), Gaps = 29/213 (13%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A+VTGAS GIG   A  LA RG  VI      A  ++  +AI  +   A    + L+
Sbjct: 5   GKIALVTGASRGIGRAIAETLAARGAKVI----GTATSENGAQAI-SDYLGANGKGLMLN 59
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNXXXXXXXXX 146
           V+  AS+     +  ++   ++IL+NNAGI     ++   + E      TN         
Sbjct: 60  VTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSK 119
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                M K      R GRI+ + S                N   A      Y  +K   I
Sbjct: 120 AVMRAMMK-----KRHGRIITIGSVVGTMG----------NGGQAN-----YAAAKAGLI 159
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             +K LA+ +   G  IT N + PG I T++ R
Sbjct: 160 GFSKSLAREVASRG--ITVNVVAPGFIETDMTR 190

>pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant In Complex With Nadph Fragment Length = 244

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 87/218 (39%), Gaps = 39/218 (17%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A+VTGAS GIG   A  LA RG  VI      A  ++  +AI  +   A    + L+
Sbjct: 5   GKIALVTGASRGIGRAIAETLAARGAKVI----GTATSENGAQAI-SDYLGANGKGLMLN 59
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNXXXXXXXXX 146
           V+  AS+     +  ++   ++IL+NNAGI     ++   + E      TN         
Sbjct: 60  VTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSK 119
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN- 205
                M K      R GRI+ +                     S   + G  GQ+  A  
Sbjct: 120 AVMRAMMK-----KRHGRIITIG--------------------SVVGTMGNGGQANFAAA 154
Query: 206 ----ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
               I  +K LA+ +   G  IT N + PG I T++ R
Sbjct: 155 KAGLIGFSKSLAREVASRG--ITVNVVAPGFIETDMTR 190

>pdb|3TZH|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(F187a) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 86/216 (39%), Gaps = 35/216 (16%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD---AM 85
           G  A+VTGAS GIG   A +LA RG  VI        G    E+  + I     D    M
Sbjct: 12  GKVALVTGASRGIGKAIAELLAERGAKVI--------GTATSESGAQAISDYLGDNGKGM 63
Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNXXXXXX 143
            L+V++  S+         +   ++IL+NNAGI     ++     E      TN      
Sbjct: 64  ALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFR 123
Query: 144 XXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                   M K      R+GRI+NV S               + +    N    Y  +K 
Sbjct: 124 LSKAVLRGMMK-----KRQGRIINVGS-----------VVGTMGNAGQAN----YAAAKA 163
Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             I   K +A+ +   GV  T N++ PG+I T++ +
Sbjct: 164 GVIGFTKSMAREVASRGV--TVNTVAPGAIETDMTK 197

>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In Complex With Nadp Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 82/209 (39%), Gaps = 20/209 (9%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           A+VTGAS GIG   AR L  +G+ V+   R +   +++            +     D+S+
Sbjct: 35  ALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN 94
Query: 92  LASVRKFASEYNSQGRPLNILINNAGIMASPFML--SKDNIELQFATNXXXXXXXXXXXX 149
              +    S   SQ   ++I INNAG+     +L  S    +  F  N            
Sbjct: 95  EEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAY 154
Query: 150 DTMKKTAQKSSREGRIVNVSS-EAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
            +MK   +++  +G I+N++S   HR        F              Y  +K A    
Sbjct: 155 QSMK---ERNVDDGHIININSMSGHRVLPLSVTHF--------------YSATKYAVTAL 197
Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNL 237
            + L + L+E   +I A  + PG + T  
Sbjct: 198 TEGLRQELREAQTHIRATCISPGVVETQF 226

>pdb|4G81|D Chain D, Crystal Structure Of A Hexonate Dehydrogenase Ortholog (Target Efi- 506402 From Salmonella Enterica, Unliganded Structure Length = 255

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 45/229 (19%)
Query: 21  VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE---- 76
           +T   D TG TA+VTG++ G+G   A  LA  G  VI+         D+R  ++ E    
Sbjct: 1   MTALFDLTGKTALVTGSARGLGFAYAEGLAAAGARVIL--------NDIRATLLAESVDT 52
Query: 77  IPSAKVDA--MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIEL 132
           +     DA  +  DV+   ++    S+ +++G  ++ILINNAGI     M  L  +N + 
Sbjct: 53  LTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQK 112
Query: 133 QFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAY 192
              TN              M   A+ S   G+I+N+ S               +  ++A 
Sbjct: 113 VIDTNLTSAFLVSRSAAKRM--IARNSG--GKIINIGS---------------LTSQAAR 153
Query: 193 NSFGAY----GQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            +   Y    G  K+     A E A+       NI  N++ PG I+T++
Sbjct: 154 PTVAPYTAAKGGIKMLTCSMAAEWAQF------NIQTNAIGPGYILTDM 196

>pdb|1WMB|A Chain A, Crystal Structure Of Nad Dependent D-3-Hydroxybutylate Dehydrogenase Length = 260

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 30/216 (13%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIM-AVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           G  A+VTG++SGIG   A  LA +G  +++    + A  + VR  +  +    KV     
Sbjct: 4   GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ-HGVKVLYDGA 62
Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNXXXXXXXX 145
           D+S   +VR        Q   ++IL+NNAGI  +  +     +  +   A N        
Sbjct: 63  DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGT 122
Query: 146 XXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKL 203
                 MKK        GRI+N++S AH    S         ++SAY +   G  G +K+
Sbjct: 123 AAALPHMKKQG-----FGRIINIAS-AHGLVASA--------NKSAYVAAKHGVVGFTKV 168
Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                       L+  G  ITAN++ PG + T L  
Sbjct: 169 ----------TALETAGQGITANAICPGWVRTPLVE 194

>pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 50/242 (20%)
Query: 32  AIVTGASSGIGTETARVLA-LRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           A+VTG + GIG    R L  L    V++  R++  G+   + +  E  S +    +LD+ 
Sbjct: 7   ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH--QLDID 64
Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIM-----ASPFMLSKDNIELQFATNXXXXXXXX 145
            L S+R        +   L++L+NNAGI       +PF +     E+   TN        
Sbjct: 65  DLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHI---QAEVTMKTNFFGTRDVC 121
Query: 146 XXXXDTMKKTAQKSSREGRIVNVSS-------EAHRFAYSEGIRFDKINDES---AYNSF 195
                 +K        +GR+VNVSS       ++      +  R + I +E      N F
Sbjct: 122 TELLPLIKP-------QGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKF 174
Query: 196 ----------------GAYGQSKLA----NILHAKELAKHLKEDGVNITANSLHPGSIVT 235
                            AYG +K+     + +HA++L++  K D   I  N+  PG + T
Sbjct: 175 VEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGD--KILLNACCPGWVRT 232
Query: 236 NL 237
           ++
Sbjct: 233 DM 234

>pdb|3TZC|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(Y155f) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 85/221 (38%), Gaps = 45/221 (20%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD---AM 85
           G  A+VTGAS GIG   A +LA RG  VI        G    E+  + I     D    M
Sbjct: 12  GKVALVTGASRGIGKAIAELLAERGAKVI--------GTATSESGAQAISDYLGDNGKGM 63
Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNXXXXXX 143
            L+V++  S+         +   ++IL+NNAGI     ++     E      TN      
Sbjct: 64  ALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFR 123
Query: 144 XXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                   M K      R+GRI+NV                     S   + G  GQ+  
Sbjct: 124 LSKAVLRGMMK-----KRQGRIINVG--------------------SVVGTMGNAGQANF 158
Query: 204 AN-----ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           A      I   K +A+ +   GV  T N++ PG I T++ +
Sbjct: 159 AAAKAGVIGFTKSMAREVASRGV--TVNTVAPGFIETDMTK 197

>pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2 Length = 276

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 50/242 (20%)
Query: 32  AIVTGASSGIGTETARVLA-LRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           A+VTG + GIG    R L  L    V++  R++  G+   + +  E  S +    +LD+ 
Sbjct: 7   ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH--QLDID 64
Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIM-----ASPFMLSKDNIELQFATNXXXXXXXX 145
            L S+R        +   L++L+NNAGI       +PF +     E+   TN        
Sbjct: 65  DLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHI---QAEVTMKTNFFGTRDVX 121
Query: 146 XXXXDTMKKTAQKSSREGRIVNVSS-------EAHRFAYSEGIRFDKINDES---AYNSF 195
                 +K        +GR+VNVSS       ++      +  R + I +E      N F
Sbjct: 122 TELLPLIKP-------QGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKF 174
Query: 196 ----------------GAYGQSKLA----NILHAKELAKHLKEDGVNITANSLHPGSIVT 235
                            AYG +K+     + +HA++L++  K D   I  N+  PG + T
Sbjct: 175 VEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGD--KILLNACCPGWVRT 232
Query: 236 NL 237
           ++
Sbjct: 233 DM 234

>pdb|3RSH|A Chain A, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase (Fabg) From Vibrio Cholerae O1 Complexed With Nadp+ (Space Group P62) Length = 251

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 85/216 (39%), Gaps = 35/216 (16%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD---AM 85
           G  A+VTGAS GIG   A +LA RG  VI        G    E+  + I     D    M
Sbjct: 12  GKVALVTGASRGIGKAIAELLAERGAKVI--------GTATSESGAQAISDYLGDNGKGM 63
Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNXXXXXX 143
            L+V++  S+         +   ++IL+NNAGI     ++     E      TN      
Sbjct: 64  ALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFR 123
Query: 144 XXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                   M K      R+GRI+NV S               + +    N    Y  +K 
Sbjct: 124 LSKAVLRGMMK-----KRQGRIINVGS-----------VVGTMGNAGQAN----YAAAKA 163
Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             I   K +A+ +   GV  T N++ PG I T++ +
Sbjct: 164 GVIGFTKSMAREVASRGV--TVNTVAPGFIETDMTK 197

>pdb|2PNF|A Chain A, Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-carrier Protein) Reductase Length = 248

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 87/209 (41%), Gaps = 21/209 (10%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  ++VTG++ GIG   A  LA  G  VI+   +    K V E I  +    K   +E++
Sbjct: 7   GKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY-GVKAHGVEMN 65
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXX 148
           + S  S+ K   E  +    ++IL+NNAGI      L    ++ +               
Sbjct: 66  LLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQ 125
Query: 149 XDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
               K   Q   R GRIVN+SS    F  + G    ++N          Y  +K   I  
Sbjct: 126 NSLRKMIKQ---RWGRIVNISSVVG-FTGNVG----QVN----------YSTTKAGLIGF 167
Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNL 237
            K LAK L     N+  N++ PG I T++
Sbjct: 168 TKSLAKELAPR--NVLVNAVAPGFIETDM 194

>pdb|3V2G|A Chain A, Crystal Structure Of A DehydrogenaseREDUCTASE FROM SINORHIZOBIUM Meliloti 1021 Length = 271

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 83/210 (39%), Gaps = 26/210 (12%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAME 86
           G TA VTG S GIG   A+ LAL G  V +   N A   +  +A+V EI  A  +  A+ 
Sbjct: 31  GKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAA---ERAQAVVSEIEQAGGRAVAIR 87
Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXX 146
            D     ++ +   E       L+IL+N+AGI  S  +      E   A           
Sbjct: 88  ADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLE-----ETTVADFDEVXAVNFR 142
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                ++  ++     GRI+ + S         GI                Y  SK A  
Sbjct: 143 APFVAIRSASRHLGDGGRIITIGSNLAELVPWPGISL--------------YSASKAALA 188
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTN 236
              K LA+ L   G  IT N +HPGS  T+
Sbjct: 189 GLTKGLARDLGPRG--ITVNIVHPGSTDTD 216

>pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 35/210 (16%)
Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           + +VTG + GIG   A+ LA  G  V +  R   A K +               +E DV+
Sbjct: 17  SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF-------------GVECDVT 63
Query: 91  SLASV-RKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXX 149
              +V R F +    QG P+ +L++NAG+ A  F++     + +   N            
Sbjct: 64  DSDAVDRAFTAVEEHQG-PVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAF----- 117
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
               + AQ++SR            R  +   I    ++      +   Y  SK   I  A
Sbjct: 118 ----RVAQRASR---------SMQRNKFGRMIFIGSVSGSWGIGNQANYAASKAGVIGMA 164
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           + +A+ L +   N+TAN + PG I T++ R
Sbjct: 165 RSIARELSK--ANVTANVVAPGYIDTDMTR 192

>pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver Somniferum Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+VTG + GIG E  + L+  G+ V++  R++  G +  E + K      V   +LDV+
Sbjct: 14  CAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKL-KNSNHENVVFHQLDVT 72
Query: 91  -SLASVRKFASEYNSQGRPLNILINNAGI 118
             +A++   A    +    L+IL+NNAG+
Sbjct: 73  DPIATMSSLADFIKTHFGKLDILVNNAGV 101

>pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase 20beta-Hydroxysteroid Dehydrogenase Length = 288

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 32  AIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM--ELD 88
           A+VTGA+ GIG    R L  +    V++  R++A G    +A VK++ +  +     +LD
Sbjct: 7   ALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARG----QAAVKQLQAEGLSPRFHQLD 62
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIM-----ASPFMLSKDNIELQFATNXXXXXX 143
           +  L S+R        +   L++L+NNA I       +PF +     EL   TN      
Sbjct: 63  IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQA---ELTMKTNFMGTRN 119
Query: 144 XXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR 182
                   +K        +GR+VNVSS       +EG+R
Sbjct: 120 VCTELLPLIKP-------QGRVVNVSS-------TEGVR 144

>pdb|1SPX|A Chain A, Crystal Structure Of Glucose Dehydrogenase Of Caenorhabditis Elegans In The Apo-Form Length = 278

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 25/209 (11%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE-IPSAKVDAMELDVS 90
           AI+TG+S+GIG  TA + A  G  V +  R+    ++ R+ I+   +    V+++  DV+
Sbjct: 9   AIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT 68
Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSK----DNIELQFATNXXXXXXXXX 146
           + A   +  S    +   L+IL+NNAG  A P   SK     +IE   AT          
Sbjct: 69  TDAGQDEILSTTLGKFGKLDILVNNAG-AAIPDSQSKTGTAQSIESYDATLNLNLRSVIA 127
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
               T K     SS +G IVN+SS A       G+         A   F  Y  +K A  
Sbjct: 128 L---TKKAVPHLSSTKGEIVNISSIA------SGLH--------ATPDFPYYSIAKAAID 170
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVT 235
            + +  A  L + G+ +  NS+ PG + T
Sbjct: 171 QYTRNTAIDLIQHGIRV--NSISPGLVAT 197

>pdb|2FWM|X Chain X, Crystal Structure Of E. Coli Enta, A 2,3-Dihydrodihydroxy Benzoate Dehydrogenase Length = 250

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 89/217 (41%), Gaps = 36/217 (16%)
Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
           +D +G    VTGA  GIG  TA      G  V         G D  +A  +E      + 
Sbjct: 3   MDFSGKNVWVTGAGKGIGYATALAFVEAGAKV--------TGFD--QAFTQEQYPFATEV 52
Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNXXXXX 142
           M  DV+  A V +      ++   L+ L+N AGI  M +   LSK++ +  FA N     
Sbjct: 53  M--DVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAF 110
Query: 143 XXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
                  +  ++      R G IV V+S+A   A++  I               AYG SK
Sbjct: 111 NLFQQTMNQFRR-----QRGGAIVTVASDA---AHTPRI------------GMSAYGASK 150
Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            A  L +  L+  L+  G  +  N + PGS  T++ R
Sbjct: 151 AA--LKSLALSVGLELAGSGVRCNVVSPGSTDTDMQR 185

>pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 35/210 (16%)
Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           + +VTG + GIG   A+ LA  G  V +  R   A K +               +E+DV+
Sbjct: 17  SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF-------------GVEVDVT 63
Query: 91  SLASV-RKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXX 149
              +V R F +    QG P+ +L++NAG+ A  F++     + +   N            
Sbjct: 64  DSDAVDRAFTAVEEHQG-PVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAF----- 117
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
               + AQ++SR            R  +   I    ++      +   Y  SK   I  A
Sbjct: 118 ----RVAQRASR---------SMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMA 164
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           + +A+ L +   N+TAN + PG I T++ R
Sbjct: 165 RSIARELSK--ANVTANVVAPGYIDTDMTR 192

>pdb|3NYW|A Chain A, Crystal Structure Of A Betaketoacyl-[acp] Reductase (Fabg) From Bacteroides Thetaiotaomicron Length = 250

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 36/219 (16%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIV---KEIPSAKVDAMELD 88
           AI+TGAS GIG   A  LA  G  V++  R+    + V + I    K +    V  + LD
Sbjct: 10  AIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIXRSNKHVQEPIV--LPLD 67
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNA-----GIMASPFMLSKDNIELQFATNXXXXXX 143
           ++          + + +   ++IL+N A     G ++ P     DN       N      
Sbjct: 68  ITDCTKADTEIKDIHQKYGAVDILVNAAAXFXDGSLSEPV----DNFRKIXEINVIAQYG 123
Query: 144 XXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                 +       K  + G I NV+S A ++ +++G               G YG +K 
Sbjct: 124 ILKTVTEIX-----KVQKNGYIFNVASRAAKYGFADG---------------GIYGSTKF 163
Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG 242
           A +  A+ L + L   G+ +T  +L PG + T+  +  G
Sbjct: 164 ALLGLAESLYRELAPLGIRVT--TLCPGWVNTDXAKKAG 200

>pdb|2ZTM|A Chain A, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase Length = 260

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 30/216 (13%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIM-AVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           G  A+VTG++SGIG   A  LA +G  +++    + A  + VR  +  +    KV     
Sbjct: 4   GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ-HGVKVLYDGA 62
Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNXXXXXXXX 145
           D+S   +VR        Q   ++IL+NNAGI  +  +     +  +   A N        
Sbjct: 63  DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGT 122
Query: 146 XXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKL 203
                 MKK        GRI+N++S AH    S         ++SAY +   G  G +K+
Sbjct: 123 AAALPHMKKQG-----FGRIINIAS-AHGLVASA--------NKSAYVAAKHGVVGFTKV 168
Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                       L+  G  ITAN++ PG + + L  
Sbjct: 169 ----------TALETAGQGITANAICPGWVRSPLVE 194

>pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l Length = 267

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 47/216 (21%)
Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           + +VTG + GIG   A+ LA  G  V +  R   A K +               +E+DV+
Sbjct: 37  SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF-------------GVEVDVT 83
Query: 91  SLASV-RKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXX 149
              +V R F +    QG P+ +L++NAG+ A  F++     + +   N            
Sbjct: 84  DSDAVDRAFTAVEEHQG-PVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAF----- 137
Query: 150 DTMKKTAQKSSRE------GRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
               + AQ++SR       GR++ ++S +  +          I +++ Y +      SK 
Sbjct: 138 ----RVAQRASRSMQRNKFGRMIFIASVSGLWG---------IGNQANYAA------SKA 178
Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             I  A+ +A+ L +   N+TAN + PG I T++ R
Sbjct: 179 GVIGMARSIARELSK--ANVTANVVAPGYIDTDMTR 212

>pdb|2ZTU|A Chain A, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase Complexed With Nad+ Length = 260

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 30/210 (14%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIM-AVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           G  A+VTG++SGIG   A  LA +G  +++    + A  + VR  +  +    KV     
Sbjct: 4   GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ-HGVKVLYDGA 62
Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNXXXXXXXX 145
           D+S   +VR        Q   ++IL+NNAGI  +  +     +  +   A N        
Sbjct: 63  DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGT 122
Query: 146 XXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKL 203
                 MKK        GRI+N++S AH    S         ++SAY +   G  G +K+
Sbjct: 123 AAALPHMKKQG-----FGRIINIAS-AHGLVASA--------NKSAYVAAKHGVVGFTKV 168
Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSI 233
                       L+  G  ITAN++ PG +
Sbjct: 169 ----------TALETAGQGITANAICPGWV 188

>pdb|3LF1|A Chain A, Apo Structure Of The Short Chain Oxidoreductase Q9hya2 From Pseudomonas Aeruginosa Pao1 Containing An Atypical Catalytic Center Length = 265

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 40/87 (45%)
Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+VTG SSGIG  T  +L   G  V    R+    +    A+ +  P A++ A   DV 
Sbjct: 10  VAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVL 69
Query: 91  SLASVRKFASEYNSQGRPLNILINNAG 117
               VR FA          +IL+NNAG
Sbjct: 70  DALQVRAFAEACERTLGCASILVNNAG 96

>pdb|4DML|A Chain A, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Synechococcus Elongatus Pcc 7942 Length = 269

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 85/209 (40%), Gaps = 27/209 (12%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
           A+VTGAS GIG   A  LA  G  V +   + +AG              +  A++ DVS 
Sbjct: 31  ALVTGASRGIGRAIALELAAAGAKVAVNYAS-SAGAADEVVAAIAAAGGEAFAVKADVSQ 89
Query: 92  LASVRK-FASEYNSQGRPLNILINNAGIMASPFML--SKDNIELQFATNXXXXXXXXXXX 148
            + V   FA+     GR L++L+NNAGI     +L   +D+ +     N           
Sbjct: 90  ESEVEALFAAVIERWGR-LDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAA 148
Query: 149 XDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
              M K      R GRI+N++S               +  E        Y  +K   I  
Sbjct: 149 AKIMLK-----QRSGRIINIAS---------------VVGEMGNPGQANYSAAKAGVIGL 188
Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNL 237
            K +AK L   G  IT N++ PG I T++
Sbjct: 189 TKTVAKELASRG--ITVNAVAPGFIATDM 215

>pdb|1HXH|A Chain A, Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID Dehydrogenase Length = 253

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 83/219 (37%), Gaps = 40/219 (18%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV------REAIVKEIPSAKV 82
           G  A+VTG +SG+G E  ++L   G  V  +  N AAG+ +      R   V+       
Sbjct: 6   GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRH------ 59
Query: 83  DAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSK--DNIELQFATNXXX 140
                DVSS A      +    +   LN+L+NNAGI+    M +   ++       N   
Sbjct: 60  -----DVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTES 114
Query: 141 XXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ 200
                      MK+T       G I+N++S +      +               +  Y  
Sbjct: 115 VFIGCQQGIAAMKETG------GSIINMASVSSWLPIEQ---------------YAGYSA 153
Query: 201 SKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           SK A     +  A   ++ G  I  NS+HP  I T + +
Sbjct: 154 SKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQ 192

>pdb|1YO6|A Chain A, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans Length = 250

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 98/229 (42%), Gaps = 32/229 (13%)
Query: 31  TAIVTGASSGIGTETARVLA----LRGVHVIMAVRNMAAGKDVREAI-VKEIPSAKVDAM 85
           + +VTGA+ GIG    + L     +R  H+I      A  +DV +A  +K I  ++V  +
Sbjct: 5   SVVVTGANRGIGLGLVQQLVKDKNIR--HII------ATARDVEKATELKSIKDSRVHVL 56
Query: 86  ELDVSSLASVRKFASEYN----SQGRPLNILINNAGIMASPFMLSKDN---IELQFATNX 138
            L V+   S+  F S+      S G  L++LINNAG++ S    ++ N   I  Q   N 
Sbjct: 57  PLTVTCDKSLDTFVSKVGEIVGSDG--LSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNT 114
Query: 139 XXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE---SAYNSF 195
                        +K  A K S +   V   S A     S G+    I D    SA    
Sbjct: 115 TSVVLLTQKLLPLLKNAASKESGDQLSV---SRAAVITISSGL--GSITDNTSGSAQFPV 169
Query: 196 GAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGIL 244
            AY  SK A  +  + LA  LK+D  N+   +  PG + TNL   N  L
Sbjct: 170 LAYRMSKAAINMFGRTLAVDLKDD--NVLVVNFCPGWVQTNLGGKNAAL 216

>pdb|2Q2Q|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Putida Length = 255

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAME-- 86
           G TA+VTG++SGIG   A+VLA  G ++++       G       + EI    V A+   
Sbjct: 4   GKTALVTGSTSGIGLGIAQVLARAGANIVL------NGFGDPAPALAEIARHGVKAVHHP 57
Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXX 146
            D+S +A +    +    +   ++IL+NNAGI     +   +   L+             
Sbjct: 58  ADLSDVAQIEALFALAEREFGGVDILVNNAGIQ---HVAPVEQFPLESWDKIIALNLSAV 114
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKLA 204
                +     ++   GRI+N++S  H    S G        ++AY +   G  G +K+ 
Sbjct: 115 FHGTRLALPGMRARNWGRIINIAS-VHGLVGSTG--------KAAYVAAKHGVVGLTKVV 165
Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +  A            N+T N++ PG ++T L +
Sbjct: 166 GLETATS----------NVTCNAICPGWVLTPLVQ 190

>pdb|4IBO|A Chain A, Crystal Structure Of A Putative Gluconate Dehydrogenase From Agrobacterium Tumefaciens (Target Efi-506446) Length = 271

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA--IVKEIPSAKVD 83
           D  G TA+VTG+S G+G   A  LA+ G  +++       G D       V+E  +   D
Sbjct: 23  DLGGRTALVTGSSRGLGRAMAEGLAVAGARILI------NGTDPSRVAQTVQEFRNVGHD 76
Query: 84  --AMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXX 141
             A+  DV+S + + +  +  + QG  ++IL+NNAGI        K  IEL+ A      
Sbjct: 77  AEAVAFDVTSESEIIEAFARLDEQGIDVDILVNNAGI-----QFRKPMIELETADWQRVI 131
Query: 142 XXXXXXXXDTMKKTAQK--SSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
                      ++ A++      G+IVN+ S               +  E A  +   Y 
Sbjct: 132 DTNLTSAFMIGREAAKRMIPRGYGKIVNIGS---------------LTSELARATVAPYT 176
Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            +K    +  + +A    + G  I AN++ PG ++T++
Sbjct: 177 VAKGGIKMLTRAMAAEWAQYG--IQANAIGPGYMLTDM 212

>pdb|3ICC|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis At 1.87 A Resolution Length = 255

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 89/216 (41%), Gaps = 33/216 (15%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL- 87
           G  A+VTGAS GIG   A+ LA  G  V +   N    K+  E  V EI S    A  + 
Sbjct: 7   GKVALVTGASRGIGRAIAKRLANDGALVAIHYGNR---KEEAEETVYEIQSNGGSAFSIG 63
Query: 88  -DVSSLASVRKFASEYNS--QGR----PLNILINNAGIMASPFMLSKDNIELQFATNXXX 140
            ++ SL  V    S  ++  Q R      +ILINNAGI    F+  ++  E  F      
Sbjct: 64  ANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFI--EETTEQFFDRXVSV 121
Query: 141 XXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ 200
                      +++   +     RI+N+SS A R +  +               F AY  
Sbjct: 122 NAKAPFF---IIQQALSRLRDNSRIINISSAATRISLPD---------------FIAYSX 163
Query: 201 SKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN 236
           +K A       LAK L   G  IT N++ PG + T+
Sbjct: 164 TKGAINTXTFTLAKQLGARG--ITVNAILPGFVKTD 197

>pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol Length = 244

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 47/219 (21%)
Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +GL A+VTGA  GIG +T + L   G  V+   R      D+  ++ KE P   ++ + +
Sbjct: 6   SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT---NSDL-VSLAKECPG--IEPVCV 59
Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAG-IMASPFM-LSKDNIELQFATNXXXXXXXX 145
           D+    +  K          P+++L+NNA  ++  PF+ ++K+  +  F+ N        
Sbjct: 60  DLGDWDATEKALGGIG----PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLR------ 109
Query: 146 XXXXDTMKKTAQKSSRE-------GRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAY 198
                ++ + +Q  +R+       G IVNVSS      +   I                Y
Sbjct: 110 -----SVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLI---------------TY 149
Query: 199 GQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
             +K A  +  K +A  L    + +  NS++P  ++T++
Sbjct: 150 SSTKGAMTMLTKAMAMELGPHKIRV--NSVNPTVVLTDM 186

>pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Length = 263

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 23/209 (11%)
Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +G  A++TG+SSGIG   A   A  G H+++  R +    +   ++ KE    +V  + +
Sbjct: 6   SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSL-KEKFGVRVLEVAV 64
Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXX 147
           DV++   V        S     +IL+NNAG  ++  ++   + + QF             
Sbjct: 65  DVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLA 124
Query: 148 XXDTMKKTAQKSSREGRIV-NVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                     ++   G I+ N S  A +  + E I                Y  +K A +
Sbjct: 125 RGLV---PGMRARGGGAIIHNASICAVQPLWYEPI----------------YNVTKAALM 165
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVT 235
           + +K LA  + +D  NI  N ++PG I+T
Sbjct: 166 MFSKTLATEVIKD--NIRVNCINPGLILT 192

>pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL Dehydrogenase From Clostridium Thermocellum Length = 247

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM--E 86
           G TAIVTG+S G+G   A  L   G ++++   N +      +A  +E  +A ++ +  +
Sbjct: 5   GKTAIVTGSSRGLGKAIAWKLGNMGANIVL---NGSPASTSLDATAEEFKAAGINVVVAK 61
Query: 87  LDVSSLASVRKFA-SEYNSQGRPLNILINNAGIMASPFML--SKDNIELQFATNXXXXXX 143
            DV +   V     +  ++ GR ++IL+NNAGI     ML  S+ + +    TN      
Sbjct: 62  GDVKNPEDVENMVKTAMDAFGR-IDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYL 120
Query: 144 XXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                   M K  QKS   G+I+N++S A       GI    I +    N    Y  SK 
Sbjct: 121 CTKAVSKIMLK--QKS---GKIINITSIA-------GI----IGNAGQAN----YAASKA 160
Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
             I   K +AK     G  I  N++ PG I T++
Sbjct: 161 GLIGFTKSIAKEFAAKG--IYCNAVAPGIIKTDM 192

>pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Reveals The Structure Bases Of Its Catalytic Mechanism And High Substrate Selectivity Length = 263

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 23/209 (11%)
Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +G  A++TG+SSGIG   A   A  G H+++  R +    +   ++ KE    +V  + +
Sbjct: 6   SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSL-KEKFGVRVLEVAV 64
Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXX 147
           DV++   V        S     +IL+NNAG  ++  ++   + + QF             
Sbjct: 65  DVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELHVMAAVRLA 124
Query: 148 XXDTMKKTAQKSSREGRIV-NVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                     ++   G I+ N S  A +  + E I                Y  +K A +
Sbjct: 125 RGLV---PGMRARGGGAIIHNASICAVQPLWYEPI----------------YNVTKAALM 165
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVT 235
           + +K LA  + +D  NI  N ++PG I+T
Sbjct: 166 MFSKTLATEVIKD--NIRVNCINPGLILT 192

>pdb|3M1L|A Chain A, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A Putative Ketoacyl Reductase (Fabg4) From Mycobacterium Tuberculosis H37rv At 2.5 Angstrom Resolution Length = 432

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  AIVTGA+ GIG   A V A  G HV+ A+   +A +++ E   K        A+ LD
Sbjct: 197 GKVAIVTGAARGIGATIAEVFARDGAHVV-AIDVESAAENLAETASK----VGGTALWLD 251
Query: 89  VSSLASVRKFASEY-NSQGRPLNILINNAGIMASPFMLSKDN 129
           V++  +V K +    +  G   +IL+NNAGI     + + D+
Sbjct: 252 VTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDD 293

>pdb|3TZK|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92a) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 84/216 (38%), Gaps = 35/216 (16%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD---AM 85
           G  A+VTGAS GIG   A +LA RG  VI        G    E+  + I     D    M
Sbjct: 12  GKVALVTGASRGIGKAIAELLAERGAKVI--------GTATSESGAQAISDYLGDNGKGM 63
Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNXXXXXX 143
            L+V++  S+         +   ++IL+NNA I     ++     E      TN      
Sbjct: 64  ALNVTNPESIEAVLKAITDEFGGVDILVNNAAITRDNLLMRMKEEEWSDIMETNLTSIFR 123
Query: 144 XXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                   M K      R+GRI+NV S               + +    N    Y  +K 
Sbjct: 124 LSKAVLRGMMK-----KRQGRIINVGS-----------VVGTMGNAGQAN----YAAAKA 163
Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             I   K +A+ +   GV  T N++ PG I T++ +
Sbjct: 164 GVIGFTKSMAREVASRGV--TVNTVAPGFIETDMTK 197

>pdb|3LLS|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Mycobacterium Tuberculosis Length = 475

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  AIVTGA+ GIG   A V A  G HV+ A+   +A +++ E   K        A+ LD
Sbjct: 234 GKVAIVTGAARGIGATIAEVFARDGAHVV-AIDVESAAENLAETASK----VGGTALWLD 288
Query: 89  VSSLASVRKFASEY-NSQGRPLNILINNAGIMASPFMLSKDN 129
           V++  +V K +    +  G   +IL+NNAGI     + + D+
Sbjct: 289 VTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDD 330

>pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh Length = 454

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  AIVTGA+ GIG   A V A  G HV+ A+   +A +++ E   K        A+ LD
Sbjct: 213 GKVAIVTGAARGIGATIAEVFARDGAHVV-AIDVESAAENLAETASK----VGGTALWLD 267
Query: 89  VSSLASVRKFASEY-NSQGRPLNILINNAGIMASPFMLSKDN 129
           V++  +V K +    +  G   +IL+NNAGI     + + D+
Sbjct: 268 VTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDD 309

>pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4) From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom Resolution Length = 462

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  AIVTGA+ GIG   A V A  G HV+ A+   +A +++ E   K        A+ LD
Sbjct: 221 GKVAIVTGAARGIGATIAEVFARDGAHVV-AIDVESAAENLAETASK----VGGTALWLD 275
Query: 89  VSSLASVRKFASEY-NSQGRPLNILINNAGIMASPFMLSKDN 129
           V++  +V K +    +  G   +IL+NNAGI     + + D+
Sbjct: 276 VTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDD 317

>pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain Oxidoreductase (Sdr) In Complex With Nadp Length = 262

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 10/159 (6%)
Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +G  A+VTGAS GIG   AR L   G  V++  R++   + V   IV      + ++   
Sbjct: 28  SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA--GGEAESHAC 85
Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKD-NIELQFATNXXXXXXX 144
           D+S   ++  FA+   +     ++L+NNAG+     P    K    +   A N       
Sbjct: 86  DLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLL 145
Query: 145 XXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF 183
                  M      +++ G I+N+SS A +   ++G  +
Sbjct: 146 LRAFAPAM-----IAAKRGHIINISSLAGKNPVADGAAY 179

>pdb|3Q6I|A Chain A, Crystal Structure Of Fabg4 And Coenzyme Binary Complex Length = 446

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  AIVTGA+ GIG   A V A  G HV+ A+   +A +++ E   K        A+ LD
Sbjct: 205 GKVAIVTGAARGIGATIAEVFARDGAHVV-AIDVESAAENLAETASK----VGGTALWLD 259
Query: 89  VSSLASVRKFASEY-NSQGRPLNILINNAGIMASPFMLSKDN 129
           V++  +V K +    +  G   +IL+NNAGI     + + D+
Sbjct: 260 VTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDD 301

>pdb|3U09|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92d) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 84/216 (38%), Gaps = 35/216 (16%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD---AM 85
           G  A+VTGAS GIG   A +LA RG  VI        G    E+  + I     D    M
Sbjct: 12  GKVALVTGASRGIGKAIAELLAERGAKVI--------GTATSESGAQAISDYLGDNGKGM 63
Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNXXXXXX 143
            L+V++  S+         +   ++IL+NNA I     ++     E      TN      
Sbjct: 64  ALNVTNPESIEAVLKAITDEFGGVDILVNNADITRDNLLMRMKEEEWSDIMETNLTSIFR 123
Query: 144 XXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                   M K      R+GRI+NV S               + +    N    Y  +K 
Sbjct: 124 LSKAVLRGMMK-----KRQGRIINVGS-----------VVGTMGNAGQAN----YAAAKA 163
Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             I   K +A+ +   GV  T N++ PG I T++ +
Sbjct: 164 GVIGFTKSMAREVASRGV--TVNTVAPGFIETDMTK 197

>pdb|3R1I|A Chain A, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 89/247 (36%), Gaps = 58/247 (23%)
Query: 17  TAEEVTQG---------IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGK 67
           T E  TQG          D +G  A++TGAS+GIG + A   A  G  V +A R+     
Sbjct: 11  TLEAQTQGPGSMSVLDLFDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARH----S 66
Query: 68  DVREAIVKEIPSAKVDAMEL--DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML 125
           D  + +  EI      A+ +  DV+    VR    +   +   ++I + NAGI++   ML
Sbjct: 67  DALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAML 126
Query: 126 SKDNIELQFA--TNXXXXXXXXXXXXDTMKKTA------QKSSREGRIVNVSSEAHRFAY 177
                E Q    TN              M            +S  G I+N+  +   +  
Sbjct: 127 DMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCT 186
Query: 178 SEGIRFDKINDESAYNSFGAYGQSKLANILH-----AKELAKHLKEDGVNITANSLHPGS 232
           S+                        A ++H     A ELA H       I  NS+ PG 
Sbjct: 187 SK------------------------AAVVHLTKAMAVELAPH------QIRVNSVSPGY 216
Query: 233 IVTNLFR 239
           I T L  
Sbjct: 217 IRTELVE 223

>pdb|4IQG|C Chain C, Crystal Structure Of Bpro0239 Oxidoreductase From Polaromonas Sp. Js666 In Nadp Bound Form Length = 271

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 22/214 (10%)
Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELDVS 90
           ++TG S GIG  +A + A +G  V +   N A+     + +V++I  A  +  A++ DV+
Sbjct: 29  LITGGSRGIGAASALLAARQGYAVAV---NYASNSAAADEVVRQIREAGGQALAVQADVA 85
Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIE-LQFATNXXXXXXXXXXXX 149
               V       ++Q   L+ L+NNAG++     +    +E LQ                
Sbjct: 86  KEREVLAXFETVDAQLGRLSALVNNAGVVDQTTRVDGITLERLQRXFEINVFGSFLCARE 145
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
              + + +     G IVNVSS A R   S G   D    + A ++F              
Sbjct: 146 AVKRXSTRYGGSGGSIVNVSSAAARLG-SPGQYVDYAAAKGAIDTF-------------T 191
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI 243
             LAK +  +G+ +  N++ PG I T++    G+
Sbjct: 192 LGLAKEVATEGIRV--NAVRPGIIETDIHASGGL 223

>pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp Length = 273

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 89/220 (40%), Gaps = 43/220 (19%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G TA+VTG S GIG      LA  G  V    RN    K++ E +  EI   K   +E  
Sbjct: 21  GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE---KELDECL--EIWREKGLNVEGS 75
Query: 89  VSSLAS-------VRKFASEYNSQGRPLNILINNAGIM----ASPFMLSKDNIELQFATN 137
           V  L S       ++  A  ++ +   LNIL+NNAG++    A  F     NI +   TN
Sbjct: 76  VCDLLSRTERDKLMQTVAHVFDGK---LNILVNNAGVVIHKEAKDFTEKDYNIIM--GTN 130
Query: 138 XXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGA 197
                         +     K+S+ G ++ +SS               I   SA  S   
Sbjct: 131 FEAAYHLSQIAYPLL-----KASQNGNVIFLSS---------------IAGFSALPSVSL 170
Query: 198 YGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           Y  SK A     K LA    +D  NI  NS+ PG I+T L
Sbjct: 171 YSASKGAINQMTKSLACEWAKD--NIRVNSVAPGVILTPL 208

>pdb|4ESO|A Chain A, Crystal Structure Of A Putative Oxidoreductase Protein From Sinorhizobium Meliloti 1021 In Complex With Nadp Length = 255

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 82/209 (39%), Gaps = 31/209 (14%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  AIV G + G G  T R L   G  V++  RN +    +RE         +V A+  D
Sbjct: 8   GKKAIVIGGTHGXGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSD 62
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPF-MLSKDNIELQFATNXXXXXXXXX 146
           ++ L  +    +        +++L  NAG+    PF  +S+ + + QFA N         
Sbjct: 63  IADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFF--- 119
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
               T+++        G IV  SS               + DE  +     Y  SK A +
Sbjct: 120 ----TVQRLTPLIREGGSIVFTSS---------------VADEGGHPGXSVYSASKAALV 160
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVT 235
             A  LA  L   G+ +  NS+ PG I T
Sbjct: 161 SFASVLAAELLPRGIRV--NSVSPGFIDT 187

>pdb|3VC7|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Sinorhizobium Meliloti 1021 Length = 254

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 82/209 (39%), Gaps = 31/209 (14%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  AIV G + G G  T R L   G  V++  RN +    +RE         +V A+  D
Sbjct: 7   GKKAIVIGGTHGXGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSD 61
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPF-MLSKDNIELQFATNXXXXXXXXX 146
           ++ L  +    +        +++L  NAG+    PF  +S+ + + QFA N         
Sbjct: 62  IADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFF--- 118
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
               T+++        G IV  SS               + DE  +     Y  SK A +
Sbjct: 119 ----TVQRLTPLIREGGSIVFTSS---------------VADEGGHPGXSVYSASKAALV 159
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVT 235
             A  LA  L   G+ +  NS+ PG I T
Sbjct: 160 SFASVLAAELLPRGIRV--NSVSPGFIDT 186

>pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase (Saro_0793) From Novosphingobium Aromaticivorans Length = 319

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDA 84
           D  G TA VTG ++G+G    R L  +G  V +A +R  +  K +   +  E    +V  
Sbjct: 5   DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKAL-ATLEAEGSGPEVMG 63
Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGI 118
           ++LDV+S    +  A E  ++  P++IL NNAG+
Sbjct: 64  VQLDVASREGFKMAADEVEARFGPVSILCNNAGV 97

>pdb|2YZ7|A Chain A, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Length = 260

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 90/217 (41%), Gaps = 32/217 (14%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV-RE-AIVKEIPSAKVDAME 86
           G  A+VTG++SGIG   A  LA  G  V+  +      +D+ RE + ++     K   + 
Sbjct: 4   GKKAVVTGSTSGIGLAMATELAKAGADVV--INGFGQPEDIERERSTLESKFGVKAYYLN 61
Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPF-MLSKDNIELQFATNXXXXXXX 144
            D+S   + R F ++       L+IL+NNAGI   +P      D      A N       
Sbjct: 62  ADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHG 121
Query: 145 XXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSK 202
                  M+K        GRI+N++S AH    S         ++SAY +   G  G +K
Sbjct: 122 TAAALPIMQKQGW-----GRIINIAS-AHGLVASV--------NKSAYVAAKHGVVGLTK 167
Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           +            L+  G  IT N++ PG + T L  
Sbjct: 168 V----------TALENAGKGITCNAICPGWVRTPLVE 194

>pdb|1PR9|A Chain A, Human L-Xylulose Reductase Holoenzyme Length = 244

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 33/211 (15%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G   +VTGA  GIG  T + L   G  V+   R  A   D+ +++V+E P   ++ + +D
Sbjct: 7   GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA---DL-DSLVRECPG--IEPVCVD 60
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNXXXXXXXXX 146
           +    +  +      S G P+++L+NNA + +  PF+ ++K+  +  F  N         
Sbjct: 61  LGDWEATER---ALGSVG-PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVN----LRAVI 112
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                + +        G IVNVSS+  + A         + + S Y S    G   +   
Sbjct: 113 QVSQIVARGLIARGVPGAIVNVSSQCSQRA---------VTNHSVYCS--TKGALDMLTK 161
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           + A EL  H       I  N+++P  ++T++
Sbjct: 162 VMALELGPH------KIRVNAVNPTVVMTSM 186

>pdb|3QIV|A Chain A, Crystal Structure Of A Putative Short-Chain Dehydrogenase Or 3- Oxoacyl-[acyl-Carrier-Protein] Reductase From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 28/210 (13%)
Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL 92
           IVTG+  GIG   A  LA  G  V++A  N  A + V + IV +  +A   ++ +DVS  
Sbjct: 13  IVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAI--SVAVDVSDP 70
Query: 93  ASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNXXXXXXXXXXXX 149
            S +  A    ++   ++ L+NNA I   M   F+L+ D  E                  
Sbjct: 71  ESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDP-EYYKKFMSVNLDGALWCTR 129
Query: 150 DTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHA 209
              KK  ++    G IVN SS A                   Y+++  YG +K+      
Sbjct: 130 AVYKKMTKRGG--GAIVNQSSTAAWL----------------YSNY--YGLAKVGINGLT 169
Query: 210 KELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           ++L++ L   G NI  N++ PG I T   R
Sbjct: 170 QQLSRELG--GRNIRINAIAPGPIDTEANR 197

>pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph Length = 259

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 25/211 (11%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA-KVDAMEL 87
           G TA+VTG S GIG      LA  G  V    RN    K++ + + +      KV+A   
Sbjct: 8   GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ---KELNDCLTQWRSKGFKVEASVC 64
Query: 88  DVSSLASVRKFASEY-NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXX 146
           D+SS +  ++  +   N     LNIL+NNAGI+   +  +KD     ++           
Sbjct: 65  DLSSRSERQELMNTVANHFHGKLNILVNNAGIVI--YKEAKDYTVEDYSL-IMSINFEAA 121
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                +     K+S  G +V +SS +   A    + ++ +           YG +K A  
Sbjct: 122 YHLSVLAHPFLKASERGNVVFISSVSGALA----VPYEAV-----------YGATKGAMD 166
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
              + LA    +D  NI  N + PG I T+L
Sbjct: 167 QLTRCLAFEWAKD--NIRVNGVGPGVIATSL 195

>pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And Pseudotropine Length = 260

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 25/211 (11%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA-KVDAMEL 87
           G TA+VTG S GIG      LA  G  V    RN    K++ + + +      KV+A   
Sbjct: 9   GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ---KELNDCLTQWRSKGFKVEASVC 65
Query: 88  DVSSLASVRKFASEY-NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXX 146
           D+SS +  ++  +   N     LNIL+NNAGI+   +  +KD     ++           
Sbjct: 66  DLSSRSERQELMNTVANHFHGKLNILVNNAGIVI--YKEAKDYTVEDYSL-IMSINFEAA 122
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                +     K+S  G +V +SS +   A    + ++ +           YG +K A  
Sbjct: 123 YHLSVLAHPFLKASERGNVVFISSVSGALA----VPYEAV-----------YGATKGAMD 167
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
              + LA    +D  NI  N + PG I T+L
Sbjct: 168 QLTRCLAFEWAKD--NIRVNGVGPGVIATSL 196

>pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Bartonella Henselae Length = 266

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 90/226 (39%), Gaps = 39/226 (17%)
Query: 17  TAEEVTQG----IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA 72
           T E  TQG       TG  A+VTGA+ GIG   AR    +G  V +           RE 
Sbjct: 11  TLEAQTQGPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGL--------HGTRED 62
Query: 73  IVKEIPS---AKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDN 129
            +KEI +     V     ++S   S+++ A     +   ++IL+NNAGI      +   +
Sbjct: 63  KLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQD 122
Query: 130 IELQ--FATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN 187
            +     A N             +M +      R GRI+N++S         G+    + 
Sbjct: 123 QDWDDVLAVNLTAASTLTRELIHSMMR-----RRYGRIINITSIV-------GV----VG 166
Query: 188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSI 233
           +    N    Y  +K   I  +K LA+ +     NIT N + PG I
Sbjct: 167 NPGQTN----YCAAKAGLIGFSKALAQEIASR--NITVNCIAPGFI 206

>pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
            D  G  A+VTG S G+G   A+ LA  G  V++A RN+    +  + + ++    +  A
Sbjct: 17  FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMA 75
Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGI 118
              DVS+   V+K       +   L+ ++N AGI
Sbjct: 76  FRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI 109

>pdb|3FTP|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Burkholderia Pseudomallei At 2.05 A Resolution Length = 270

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 91/221 (41%), Gaps = 48/221 (21%)
Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMA-----------AGKDVREAIVKEIPSA 80
           AIVTGAS GIG   A  LA RG  VI      A           AG + R A++    + 
Sbjct: 31  AIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDAT 90
Query: 81  KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNX 138
            VDA+   V S  ++++F +        LN+L+NNAGI        +  D  +    TN 
Sbjct: 91  AVDAL---VES--TLKEFGA--------LNVLVNNAGITQDQLAMRMKDDEWDAVIDTNL 137
Query: 139 XXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAY 198
                        M K     +R GRIVN++S     A + G    ++N          Y
Sbjct: 138 KAVFRLSRAVLRPMMK-----ARGGRIVNITSVVGS-AGNPG----QVN----------Y 177
Query: 199 GQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             +K       + LA+ +   G  IT N + PG I T++ +
Sbjct: 178 AAAKAGVAGMTRALAREIGSRG--ITVNCVAPGFIDTDMTK 216

>pdb|3O38|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Mycobacterium Smegmatis Length = 266

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 10/116 (8%)
Query: 8   GPSGFSASSTAEEVTQGIDGTGL----TAIVTGAS-SGIGTETARVLALRGVHVIMAVRN 62
           GP   + S   +E    IDG GL      +VT A+ +GIG+ TAR   L G  V+++  +
Sbjct: 1   GPGSMNLSEAPKE----IDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYH 56
Query: 63  MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI 118
                + R+ +  ++   +V+A+  DV+S  +V    ++   +   L++L+NNAG+
Sbjct: 57  ERRLGETRDQLA-DLGLGRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGL 111

>pdb|3D3W|A Chain A, Structure Of L-Xylulose Reductase With Bound Coenzyme, Phosphate And Hydroxide Length = 244

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 33/211 (15%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G   +VTGA  GIG  T + L   G  V+   R  A   D+ +++V+E P   ++ + +D
Sbjct: 7   GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA---DL-DSLVRECPG--IEPVCVD 60
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNXXXXXXXXX 146
           +    +  +      S G P+++L+NNA + +  PF+ ++K+  +  F  N         
Sbjct: 61  LGDWEATER---ALGSVG-PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVN----LRAVI 112
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                + +        G IVNVSS+  + A         + + S Y S    G   +   
Sbjct: 113 QVSQIVARGLIARGVPGAIVNVSSQXSQRA---------VTNHSVYCS--TKGALDMLTK 161
Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           + A EL  H       I  N+++P  ++T++
Sbjct: 162 VMALELGPH------KIRVNAVNPTVVMTSM 186

>pdb|4HP8|A Chain A, Crystal Structure Of A Putative 2-Deoxy-D-Gluconate 3-Dehydrogenase From Agrobacterium Tumefaciens (Target Efi-506435) With Bound Nadp Length = 247

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 87/212 (41%), Gaps = 36/212 (16%)
Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G  A+VTGA++G+G   A  LA  G  V+ A R   A  +  + I K+       A+ +D
Sbjct: 9   GRKALVTGANTGLGQAIAVGLAAAGAEVVCAARR--APDETLDIIAKD--GGNASALLID 64
Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNXXXXXXXXX 146
            +   + +     +   G   +IL+NNAGI+  A     S    EL +            
Sbjct: 65  FADPLAAK---DSFTDAG--FDILVNNAGIIRRADSVEFS----ELDWDEVMDVNLKALF 115
Query: 147 XXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKLA 204
                  K      R G++VN++S     ++  GIR        +Y +   G  G +KL 
Sbjct: 116 FTTQAFAKELLAKGRSGKVVNIAS---LLSFQGGIRV------PSYTAAKHGVAGLTKL- 165
Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTN 236
                  LA      G+N+  N++ PG I TN
Sbjct: 166 -------LANEWAAKGINV--NAIAPGYIETN 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	1e-108
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	5e-76
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	2e-57
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	8e-37
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	2e-36
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	2e-34
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	4e-34
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	7e-34
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	7e-34
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	9e-34
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	2e-33
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	4e-33
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	1e-32
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	4e-32
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	7e-32
1spx_A	278	Short-chain reductase family member (5L265); paral	8e-32
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	1e-31
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	1e-31
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	2e-31
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	2e-31
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	4e-31
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	4e-31
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	6e-31
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	6e-31
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	8e-31
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	1e-30
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	2e-30
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	3e-30
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	3e-30
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	4e-30
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	6e-30
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	6e-30
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	7e-30
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	8e-30
1xkq_A	280	Short-chain reductase family member (5D234); parra	9e-30
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	1e-29
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	1e-29
1xhl_A	297	Short-chain dehydrogenase/reductase family member	2e-29
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	2e-29
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	3e-29
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	3e-29
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	3e-29
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	4e-29
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	4e-29
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	5e-29
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	6e-29
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	8e-29
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	1e-28
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	1e-28
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	1e-28
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	1e-28
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	2e-28
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	2e-28
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	2e-28
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	2e-28
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	2e-28
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	3e-28
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	3e-28
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	3e-28
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	3e-28
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	4e-28
1xq1_A	266	Putative tropinone reducatse; structural genomics,	4e-28
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	5e-28
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	5e-28
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	5e-28
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	6e-28
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	7e-28
4dqx_A	277	Probable oxidoreductase protein; structural genomi	7e-28
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	8e-28
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	9e-28
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	9e-28
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	1e-27
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	1e-27
4e4y_A	244	Short chain dehydrogenase family protein; structur	2e-27
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	3e-27
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	3e-27
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	3e-27
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	4e-27
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	4e-27
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	4e-27
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	4e-27
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	5e-27
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	5e-27
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	5e-27
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	7e-27
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	8e-27
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	1e-26
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	1e-26
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	2e-26
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	2e-26
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	3e-26
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	3e-26
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	3e-26
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	3e-26
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	4e-26
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	5e-26
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	6e-26
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	6e-26
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	7e-26
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	1e-25
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	1e-25
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	1e-25
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	1e-25
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	2e-25
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	4e-25
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	4e-25
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	7e-25
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	7e-25
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	8e-25
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	8e-25
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	1e-24
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	1e-24
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	2e-24
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	2e-24
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	3e-24
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	3e-24
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	3e-24
3rih_A	293	Short chain dehydrogenase or reductase; structural	3e-24
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	5e-24
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	6e-24
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	7e-24
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	1e-23
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	1e-23
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	1e-23
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	2e-23
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	3e-23
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	3e-23
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	3e-23
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	4e-23
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	6e-23
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	6e-23
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	8e-23
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	9e-23
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	9e-23
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	9e-23
3imf_A	257	Short chain dehydrogenase; structural genomics, in	1e-22
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	2e-22
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	2e-22
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	2e-22
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	2e-22
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	4e-22
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	5e-22
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	5e-22
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	5e-22
3cxt_A	291	Dehydrogenase with different specificities; rossma	7e-22
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	1e-21
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	1e-21
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	1e-21
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	2e-21
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	2e-21
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	3e-21
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	3e-21
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	3e-21
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	3e-21
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	3e-21
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	4e-21
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	6e-21
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	8e-21
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	1e-20
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	1e-20
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	1e-20
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	1e-20
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	1e-20
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	2e-20
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	2e-20
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	2e-20
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	3e-20
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	4e-20
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	6e-20
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	6e-20
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	8e-20
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	9e-20
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	1e-19
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	1e-19
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	2e-13
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	1e-19
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	3e-19
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	3e-19
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	6e-19
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	9e-19
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	3e-18
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	3e-18
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	3e-18
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	4e-18
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	5e-18
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	6e-17
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	6e-17
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	1e-11
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	1e-06
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	2e-05
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	4e-04

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291

 Score =  314 bits (807), Expect = e-108
 Identities = 94/240 (39%), Positives = 126/240 (52%), Gaps = 25/240 (10%)

Query: 11  GFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVR 70
           G     TA ++         T ++TGA+SG+G  TAR LA RG  VIMAVR+   G+   
Sbjct: 1   GSMTGWTAADLP---SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAA 57

Query: 71  EAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI 130
             +     + +V+  ELD+  L+SVR+FA   +      ++LINNAGIMA P+ L+ D  
Sbjct: 58  RTM-----AGQVEVRELDLQDLSSVRRFADGVSG----ADVLINNAGIMAVPYALTVDGF 108

Query: 131 ELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES 190
           E Q  TNHLGHF LT+LLL  +           R+V VSS AH       I  + +N  S
Sbjct: 109 ESQIGTNHLGHFALTNLLLPRLT---------DRVVTVSSMAHWPG---RINLEDLNWRS 156

Query: 191 -AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDFF 249
             Y+ + AY QSKLAN+L   EL + L   G  + A + HPG   TNL   +G   GD  
Sbjct: 157 RRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDAL 216

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276

 Score =  230 bits (589), Expect = 5e-76
 Identities = 57/245 (23%), Positives = 91/245 (37%), Gaps = 40/245 (16%)

Query: 31  TAIVTGASSGIGTETARVLA-LRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV 89
            A+VTG + GIG    R L  L    V++  R++  G+   + +  E         +LD+
Sbjct: 6   VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDI 63

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSK--DNIELQFATNHLGHFLLTHL 147
             L S+R        +   L++L+NNAGI       +      E+   TN  G   +   
Sbjct: 64  DDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTE 123

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYS-------EGIRFDKINDE----------- 189
           LL  +K         GR+VNVSS     A         +  R + I +E           
Sbjct: 124 LLPLIKPQ-------GRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVE 176

Query: 190 --------SAYNSFGAYGQSKLANILHAKELAKHLKED--GVNITANSLHPGSIVTNLFR 239
                          AYG +K+   + ++  A+ L E   G  I  N+  PG + T++  
Sbjct: 177 DTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG 236

Query: 240 YNGIL 244
                
Sbjct: 237 PKATK 241

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311

 Score =  184 bits (469), Expect = 2e-57
 Identities = 52/278 (18%), Positives = 91/278 (32%), Gaps = 71/278 (25%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
               A+VTG + GIG E  + L+  G+ V++  R++  G +  E + K      V   +L
Sbjct: 11  KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKL-KNSNHENVVFHQL 69

Query: 88  DVSS-LASVRKFASEYNSQGRPLNILINNAGIMA-------------------------- 120
           DV+  +A++   A    +    L+IL+NNAG+                            
Sbjct: 70  DVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIY 129

Query: 121 ------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR 174
                      + +  E     N+ G   +T +L+  ++ +        RIVNVSS    
Sbjct: 130 EKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDS-----PRIVNVSSSTGS 184

Query: 175 FA----------------------------YSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                                           +  + + I      +   AY  SK    
Sbjct: 185 LKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLN 244

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGIL 244
            + + LA  +         N + PG + T +    G  
Sbjct: 245 AYTRVLANKIP----KFQVNCVCPGLVKTEMNYGIGNY 278

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250

 Score =  129 bits (326), Expect = 8e-37
 Identities = 60/228 (26%), Positives = 93/228 (40%), Gaps = 30/228 (13%)

Query: 31  TAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           + +VTGA+ GIG    + L       H+I   R++    +     +K I  ++V  + L 
Sbjct: 5   SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE-----LKSIKDSRVHVLPLT 59

Query: 89  VSSLASVRKFASEYNSQ--GRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFL 143
           V+   S+  F S+         L++LINNAG++    +    ++  I  Q   N     L
Sbjct: 60  VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVL 119

Query: 144 LTHLLLDTMKKTAQK------SSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGA 197
           LT  LL  +K  A K      S     ++ +SS       +           SA     A
Sbjct: 120 LTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTS--------GSAQFPVLA 171

Query: 198 YGQSKLA-NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGIL 244
           Y  SK A N+   + LA  LK+D   +   +  PG + TNL   N  L
Sbjct: 172 YRMSKAAINMF-GRTLAVDLKDDN--VLVVNFCPGWVQTNLGGKNAAL 216

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272

 Score =  128 bits (325), Expect = 2e-36
 Identities = 59/216 (27%), Positives = 84/216 (38%), Gaps = 27/216 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           TG   ++TGA  GIG  TA   A     +++   N    ++           AKV    +
Sbjct: 30  TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVV 87

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLT 145
           D S+   +   A +  ++   ++IL+NNAG++  S         IE  F  N L HF  T
Sbjct: 88  DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTT 147

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKL 203
              L  M K     +  G IV V+S A   +         +    AY S  F A G    
Sbjct: 148 KAFLPAMTK-----NNHGHIVTVASAAGHVS---------VPFLLAYCSSKFAAVG---F 190

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
              L   ELA  L+  GV  T   L P  + T   +
Sbjct: 191 HKTLTD-ELA-ALQITGVKTTC--LCPNFVNTGFIK 222

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250

 Score =  123 bits (310), Expect = 2e-34
 Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 24/209 (11%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE-IPSAKVDAMELDV 89
            AI+TGAS GIG   A  LA  G  V++  R+    + V + I++      +   + LD+
Sbjct: 9   LAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDI 68

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFMLSKDNIELQFATNHLGHFLLTHLL 148
           +          + + +   ++IL+N A +          DN       N +  + +   +
Sbjct: 69  TDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTV 128

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
            + MK   QK+   G I NV+S A ++ +++G               G YG +K A +  
Sbjct: 129 TEIMKV--QKN---GYIFNVASRAAKYGFADG---------------GIYGSTKFALLGL 168

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNL 237
           A+ L + L   G  I   +L PG + T++
Sbjct: 169 AESLYRELAPLG--IRVTTLCPGWVNTDM 195

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235

 Score =  121 bits (307), Expect = 4e-34
 Identities = 39/214 (18%), Positives = 70/214 (32%), Gaps = 30/214 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +    IVTGA SG+G      L  RG  V M  R         +     +    V  +  
Sbjct: 2   SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRL----QQQELLLG-NAVIGIVA 56

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLT 145
           D++    V    +     G    ++++ AG     P    + + I     +N +   L+ 
Sbjct: 57  DLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVA 116

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              +  + +      R G + NV S A +   +               +   Y  SK   
Sbjct: 117 QQTVRLIGE------RGGVLANVLSSAAQVGKA---------------NESLYCASKWGM 155

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
               + L   LK+    +   +L+P  I +  + 
Sbjct: 156 RGFLESLRAELKDSP--LRLVNLYPSGIRSEFWD 187

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259

 Score =  122 bits (307), Expect = 7e-34
 Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 34/224 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLA---LRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
                ++TGAS G G   A  LA     G  ++++ R+ +  + ++E +  + P  KV  
Sbjct: 5   GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVL 64

Query: 85  MELDVSSLASVRKFASEYNSQGRP----LNILINNAGIMASPFMLSKDNIELQ-----FA 135
              D+ + A V++  S      RP      +LINNA  +        +  +L      +A
Sbjct: 65  AAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWA 124

Query: 136 TNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF 195
            N      LT   L+  + +         +VN+SS          ++         Y  +
Sbjct: 125 LNLTSMLCLTSGTLNAFQDSP---GLSKTVVNISSLC-------ALQ--------PYKGW 166

Query: 196 GAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           G Y   K A  +  + LA     +  ++   S  PG +  ++ +
Sbjct: 167 GLYCAGKAARDMLYQVLAA----EEPSVRVLSYAPGPLDNDMQQ 206

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267

 Score =  122 bits (308), Expect = 7e-34
 Identities = 49/229 (21%), Positives = 84/229 (36%), Gaps = 33/229 (14%)

Query: 31  TAIVTGASSGIGTETARVLAL---RGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           + ++TG + G+G    + L        H+    RN    K++ +        + +  +E+
Sbjct: 23  SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN---HSNIHILEI 79

Query: 88  DVSSLASVRKFASEYNSQ--GRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHF 142
           D+ +  +  K  ++       + LN+L NNAGI    A    +    +     TN +   
Sbjct: 80  DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI 139

Query: 143 LLTHLLLDTMKKTAQK------SSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG 196
           +L    L  +KK A+             I+N+SS                   +      
Sbjct: 140 MLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ------------GNTDGGMY 187

Query: 197 AYGQSKLA-NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGIL 244
           AY  SK A N    K L+  L      I   SLHPG + T++   +  L
Sbjct: 188 AYRTSKSALNAA-TKSLSVDLYPQR--IMCVSLHPGWVKTDMGGSSAPL 233

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263

 Score =  121 bits (307), Expect = 9e-34
 Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 25/210 (11%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +G  A++TG+SSGIG   A   A  G H+++  R +    +   ++ ++    +V  + +
Sbjct: 6   SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG-VRVLEVAV 64

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLT 145
           DV++   V        S     +IL+NNAG       M  + +  +  +    +    L 
Sbjct: 65  DVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLA 124

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             L+  M+         G I++ +S                           Y  +K A 
Sbjct: 125 RGLVPGMRA-----RGGGAIIHNASICAVQPLWYEP---------------IYNVTKAAL 164

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           ++ +K LA  + +D   I  N ++PG I+T
Sbjct: 165 MMFSKTLATEVIKDN--IRVNCINPGLILT 192

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267

 Score =  121 bits (305), Expect = 2e-33
 Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 28/210 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G TA+VTG+++GIG   A  L   G +V++  R      +  + I  + P A +  +  
Sbjct: 9   KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVA 68

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLT 145
           D+ +    +    +Y      ++ILINN GI     +  +  ++    F  N +    LT
Sbjct: 69  DLGTEQGCQDVIEKYPK----VDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLT 124

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L  M +      +EGR++ ++SEA        I     + E A      Y  +K   
Sbjct: 125 RSYLKKMIE-----RKEGRVIFIASEA-------AIM---PSQEMA-----HYSATKTMQ 164

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           +  ++ LA+        +T N++ PGS +T
Sbjct: 165 LSLSRSLAELTTGTN--VTVNTIMPGSTLT 192

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260

 Score =  119 bits (302), Expect = 4e-33
 Identities = 44/212 (20%), Positives = 77/212 (36%), Gaps = 29/212 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VT  SSG+G  +A  LA  G  +++  RN    +     I   +  A+VD +  
Sbjct: 6   QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAG 65

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLT 145
           D+     + +   +    G   +IL+ + G      FM L  ++ +  +         + 
Sbjct: 66  DIREPGDIDRLFEKARDLGGA-DILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVG 124

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF--GAYGQSKL 203
               + M +        GR+V + S           +     D +  N       G  + 
Sbjct: 125 RRAAEQMVE-----KGWGRMVYIGSVTLL----RPWQ-----DLALSNIMRLPVIGVVRT 170

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
                A ELA H       +T N++ P  I+T
Sbjct: 171 L----ALELAPH------GVTVNAVLPSLILT 192

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235

 Score =  118 bits (298), Expect = 1e-32
 Identities = 50/213 (23%), Positives = 84/213 (39%), Gaps = 34/213 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA---KVDAMEL 87
            A++TGAS GIG   AR LA  G  + +  R+     D  E I  E+      +V    L
Sbjct: 4   VAVITGASRGIGEAIARALARDGYALALGARS----VDRLEKIAHELMQEQGVEVFYHHL 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLT 145
           DVS   SV +F+ +   +   +++++ NAG+        LS++        N LG +   
Sbjct: 60  DVSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTL 119

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              LD++K+     +    +V  S  + R                     G Y  +K A 
Sbjct: 120 KAFLDSLKR-----TGGLALVTTSDVSAR----------------LIPYGGGYVSTKWA- 157

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLF 238
              A  L +  + +  ++    L PG++ T   
Sbjct: 158 -ARA--LVRTFQIENPDVRFFELRPGAVDTYFG 187

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319

 Score =  118 bits (298), Expect = 4e-32
 Identities = 49/215 (22%), Positives = 86/215 (40%), Gaps = 20/215 (9%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G TA VTG ++G+G    R L  +G  V +A     +       +  E    +V  ++L
Sbjct: 7   AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQL 66

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLT 145
           DV+S    +  A E  ++  P++IL NNAG+     +   S D+ +     N  G     
Sbjct: 67  DVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGV 126

Query: 146 HLLLDTMKKTAQKSS-REGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
              +  M +  +    + G +VN +S A                  A  S G Y  +K A
Sbjct: 127 TTFVPRMVERVKAGEQKGGHVVNTASMA-------AFL--------AAGSPGIYNTTKFA 171

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
               ++ L   L +  + ++   L PG + + ++ 
Sbjct: 172 VRGLSESLHYSLLKYEIGVSV--LCPGLVKSYIYA 204

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301

 Score =  117 bits (296), Expect = 7e-32
 Identities = 48/222 (21%), Positives = 87/222 (39%), Gaps = 25/222 (11%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTG +SGIG  TA   A RG  ++++  +  A +     +  +        +  
Sbjct: 30  DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ--GFDAHGVVC 87

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLT 145
           DV  L  + + A E       ++++ +NAGI+ +  +  ++ D+       +  G     
Sbjct: 88  DVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAV 147

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L  +     +    G I   +S A       G+              G YG +K   
Sbjct: 148 EAFLPRLL----EQGTGGHIAFTASFA-------GL--------VPNAGLGTYGVAKYGV 188

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGD 247
           +  A+ LA+ +K +G  I  + L P  + T L   +  +RG 
Sbjct: 189 VGLAETLAREVKPNG--IGVSVLCPMVVETKLVSNSERIRGA 228

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278

 Score =  117 bits (295), Expect = 8e-32
 Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 31/220 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE-IPSAKVDAME 86
               AI+TG+S+GIG  TA + A  G  V +  R+    ++ R+ I+   +    V+++ 
Sbjct: 5   AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 64

Query: 87  LDVSSLASVRKFASEYNSQ-GRPLNILINNAGIMASP------FMLSKDNIELQFATNHL 139
            DV++ A   +  S    + G+ L+IL+NNAG              S ++ +     N  
Sbjct: 65  ADVTTDAGQDEILSTTLGKFGK-LDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLR 123

Query: 140 GHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
               LT   +  +  T       G IVN+SS A       G+         A   F  Y 
Sbjct: 124 SVIALTKKAVPHLSSTK------GEIVNISSIA------SGLH--------ATPDFPYYS 163

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +K A   + +  A  L + G  I  NS+ PG + T    
Sbjct: 164 IAKAAIDQYTRNTAIDLIQHG--IRVNSISPGLVATGFGS 201

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253

 Score =  116 bits (292), Expect = 1e-31
 Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 28/211 (13%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+VTG +SG+G E  ++L   G  V  +  N AAG    + +  E+   +   +  DVS
Sbjct: 8   VALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAG----QQLAAEL-GERSMFVRHDVS 62

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTHLL 148
           S A      +    +   LN+L+NNAGI           ++       N    F+     
Sbjct: 63  SEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQG 122

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           +  MK+        G I+N++S +                      +  Y  SK A    
Sbjct: 123 IAAMKE------TGGSIINMASVS-------SWL--------PIEQYAGYSASKAAVSAL 161

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +  A   ++ G  I  NS+HP  I T + +
Sbjct: 162 TRAAALSCRKQGYAIRVNSIHPDGIYTPMMQ 192

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265

 Score =  116 bits (293), Expect = 1e-31
 Identities = 48/221 (21%), Positives = 74/221 (33%), Gaps = 46/221 (20%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +   A+VTG SSGIG  T  +L   G  V    R+    +    A+ +  P A++ A   
Sbjct: 7   SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVC 66

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           DV     VR FA          +IL+NNAG    S F   + +    +            
Sbjct: 67  DVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPV 126

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSS------EAHRFAYSEGIRFDKINDESAYNSFGAYG 199
              L  ++        +  IV V+S      E H  A             SA        
Sbjct: 127 RAFLPQLES-----RADAAIVCVNSLLASQPEPHMVAT------------SA-------- 161

Query: 200 QSKLANILH-----AKELAKHLKEDGVNITANSLHPGSIVT 235
            ++ A + +     A E A         +  N +  G + +
Sbjct: 162 -AR-AGVKNLVRSMAFEFAPK------GVRVNGILIGLVES 194

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247

 Score =  115 bits (290), Expect = 2e-31
 Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 27/215 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE-IPSAKVDAME 86
            G   +VTGA+ GIG   AR  A  G  V++  R  A+  +V + I     P   + A+ 
Sbjct: 13  KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALN 72

Query: 87  LDVSSLASVRKFASEYNSQ-GRPLNILINNAGIM--ASPFM-LSKDNIELQFATNHLGHF 142
           L+ ++    R+ A+    + GR L+ L++NA I+   +P   L  ++       N    F
Sbjct: 73  LENATAQQYRELAARVEHEFGR-LDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATF 131

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
           +LT  LL  +K+     S +  I   SS   R                A   +GAYG SK
Sbjct: 132 MLTRALLPLLKR-----SEDASIAFTSSSVGRKG-------------RAN--WGAYGVSK 171

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            A     + LA  L+     + ANS++PG+  T +
Sbjct: 172 FATEGLMQTLADELEGVT-AVRANSINPGATRTGM 205

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251

 Score =  115 bits (290), Expect = 2e-31
 Identities = 54/212 (25%), Positives = 76/212 (35%), Gaps = 26/212 (12%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-PSAKVDAMELDV 89
            AI+TG + GIG   A      G  V++  R+   G    E   K +    ++   + D 
Sbjct: 8   VAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVG----EKAAKSVGTPDQIQFFQHDS 63

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTHL 147
           S      K          P++ L+NNAGI    S    +        A N  G F  T L
Sbjct: 64  SDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRL 123

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
            +  MK           I+N+SS         G             S GAY  SK A  +
Sbjct: 124 GIQRMKNKGLG----ASIINMSSIE-------GFV--------GDPSLGAYNASKGAVRI 164

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +K  A        ++  N++HPG I T L  
Sbjct: 165 MSKSAALDCALKDYDVRVNTVHPGYIKTPLVD 196

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264

 Score =  114 bits (289), Expect = 4e-31
 Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 34/221 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELD 88
             ++TGAS GIG   AR L + G  +++  R     +   EAI  EI  A     A  LD
Sbjct: 6   VILITGASGGIGEGIARELGVAGAKILLGARR----QARIEAIATEIRDAGGTALAQVLD 61

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLTH 146
           V+   SV  FA         +++L+NNAG+M  SP   +  D  E     N  G      
Sbjct: 62  VTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIG 121

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
            +L  M+  AQ+S   G+I+N+ S                           Y  +K A  
Sbjct: 122 AVLPIME--AQRS---GQIINIGSIGALSVVPTA---------------AVYCATKFA-- 159

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGD 247
              + ++  L+++  NI    ++PG + + L     I   +
Sbjct: 160 --VRAISDGLRQESTNIRVTCVNPGVVESELA--GTITHEE 196

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245

 Score =  114 bits (288), Expect = 4e-31
 Identities = 34/214 (15%), Positives = 70/214 (32%), Gaps = 34/214 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
               A+VTGA+ G+G E  + L+   +   +         +   A+ +      V+ +E 
Sbjct: 4   KKKIAVVTGATGGMGIEIVKDLSRDHIVYALGRN-----PEHLAALAEIE---GVEPIES 55

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLT 145
           D+           +  +    ++ L++ A +   +     S          N +    L+
Sbjct: 56  DIVKEVLEEGGVDKLKNLDH-VDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELS 114

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             LL  ++         G ++ ++S A    +                    Y  SK A 
Sbjct: 115 RQLLPALRA------ASGCVIYINSGAGNGPHPGN---------------TIYAASKHAL 153

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
              A    K    +G  I  +++ PG   T + +
Sbjct: 154 RGLADAFRKEEANNG--IRVSTVSPGPTNTPMLQ 185

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286

 Score =  115 bits (289), Expect = 6e-31
 Identities = 53/216 (24%), Positives = 80/216 (37%), Gaps = 28/216 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   IVTGAS GIG E A  LA  G HV++  R+    + V      E+ +A    +  
Sbjct: 27  QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHC-LELGAASAHYIAG 85

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLT 145
            +  +    +F ++       L++LI N               ++      N L + +LT
Sbjct: 86  TMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLT 145

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L  +K+        G IV VSS A + AY            +AY++      SK A 
Sbjct: 146 VAALPMLKQ------SNGSIVVVSSLAGKVAYPMV---------AAYSA------SKFA- 183

Query: 206 ILHA--KELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            L      + K      VN++      G I T    
Sbjct: 184 -LDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAM 218

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252

 Score =  114 bits (287), Expect = 6e-31
 Identities = 43/216 (19%), Positives = 73/216 (33%), Gaps = 30/216 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
              T  V GA   IG E A+  A  G  V    RN          +V EI +A  ++ A 
Sbjct: 6   RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKL----APLVAEIEAAGGRIVAR 61

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFL 143
            LD  +   V  F +  ++   PL + I N G     P +  +       +       F+
Sbjct: 62  SLDARNEDEVTAFLNAADAHA-PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFV 120

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                   M         +G+I    + A        +R          + F A+  +K 
Sbjct: 121 SGRESARLMLA-----HGQGKIFFTGATA-------SLR--------GGSGFAAFASAKF 160

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                A+ +A+ L    +++ A+ +    + T   R
Sbjct: 161 GLRAVAQSMARELMPKNIHV-AHLIIDSGVDTAWVR 195

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267

 Score =  114 bits (287), Expect = 8e-31
 Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 29/215 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTGA+ GIG   A  L L+G  V +   N+ AG   + A+ ++    K   ++ 
Sbjct: 6   NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQC 65

Query: 88  DVSSLASVRK-FASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTH 146
           DV+    +R  F    +  GR L+IL+NNAG+       ++ N E     N +     T+
Sbjct: 66  DVADQQQLRDTFRKVVDHFGR-LDILVNNAGVN------NEKNWEKTLQINLVSVISGTY 118

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKLA 204
           L LD M K  Q     G I+N+SS A       G+    +  +  Y +   G  G ++ A
Sbjct: 119 LGLDYMSK--QNGGEGGIIINMSSLA-------GLM--PVAQQPVYCASKHGIVGFTRSA 167

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +  A  L          +  N++ PG + T +  
Sbjct: 168 AL--AANLMNS------GVRLNAICPGFVNTAILE 194

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254

 Score =  113 bits (286), Expect = 1e-30
 Identities = 53/211 (25%), Positives = 79/211 (37%), Gaps = 29/211 (13%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           T I+TG + G+G E AR     G  V++A      G     A  +E+         LDV+
Sbjct: 7   TVIITGGARGLGAEAARQAVAAGARVVLADVLDEEG----AATARELG-DAARYQHLDVT 61

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTHLL 148
                ++  +    +   ++ L+NNAGI         S +        N  G F+    +
Sbjct: 62  IEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTV 121

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           +  MK      +  G IVN+SS A       G+               +YG SK      
Sbjct: 122 IPAMKD-----AGGGSIVNISSAA-------GLM--------GLALTSSYGASKWGVRGL 161

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           +K  A  L  D   I  NS+HPG   T +  
Sbjct: 162 SKLAAVELGTDR--IRVNSVHPGMTYTPMTA 190

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252

 Score =  112 bits (284), Expect = 2e-30
 Identities = 53/212 (25%), Positives = 82/212 (38%), Gaps = 29/212 (13%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-PSAKVDAMELDV 89
             +VTGAS GIG E A   A  G  VI+  RN    + V   I +E     +   ++L  
Sbjct: 14  IILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLT 73

Query: 90  SSLASVRKFASEYNSQ-GRPLNILINNAGIM--ASPF-MLSKDNIELQFATNHLGHFLLT 145
            +  + ++ A        R L+ +++NAG++    P    +    +     N    F+LT
Sbjct: 74  CTSENCQQLAQRIAVNYPR-LDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLT 132

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             LL  + K     S  G +V  SS   R                A    GAY  SK A 
Sbjct: 133 QALLPLLLK-----SDAGSLVFTSSSVGRQG-------------RANW--GAYAASKFAT 172

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
               + LA   ++    +  N ++PG   T +
Sbjct: 173 EGMMQVLADEYQQ---RLRVNCINPGGTRTAM 201

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266

 Score =  112 bits (283), Expect = 3e-30
 Identities = 54/237 (22%), Positives = 94/237 (39%), Gaps = 36/237 (15%)

Query: 8   GPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGK 67
           GP   S ++T +     +   G  A++TGA+ GIG + AR  A  G  ++++ R+++   
Sbjct: 1   GPG--SMTTTDDRYAGVLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELD 58

Query: 68  DVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-L 125
             R A+ ++     V  + +D++   +  + A         L++L+NNAGI    P +  
Sbjct: 59  AARRALGEQFG-TDVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDT 117

Query: 126 SKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK 185
                +   A N     LL   +   M          G I+ V+S               
Sbjct: 118 DPQLFDATIAVNLRAPALLASAVGKAMVAA----GEGGAIITVAS--------------- 158

Query: 186 INDESAYNSFGAYGQSKLANILH-----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
               +      AY  SK A ++      A+EL  H       I ANS+ P  ++T +
Sbjct: 159 AAALAPLPDHYAYCTSK-AGLVMATKVLARELGPH------GIRANSVCPTVVLTEM 208

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254

 Score =  112 bits (282), Expect = 3e-30
 Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 33/215 (15%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           G   +VTG S GIG     VL          V  +A  +   + + ++    +   +  D
Sbjct: 2   GKVILVTGVSRGIGKSIVDVLFSLDKDT--VVYGVARSEAPLKKLKEKYGD-RFFYVVGD 58

Query: 89  VSSLASVRKFASEYNSQ-GRPLNILINNAGIMA--SPFM-LSKDNIELQFATNHLGHFLL 144
           ++  + +++  +      G+ ++ L+ NAG++        +  +  +  +  N      L
Sbjct: 59  ITEDSVLKQLVNAAVKGHGK-IDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSL 117

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
             + L  +KK        G +V VSS+A                   ++S+GAYG SK A
Sbjct: 118 VGIALPELKK------TNGNVVFVSSDA-------CNM--------YFSSWGAYGSSK-A 155

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            + H    A  L  +   + A ++ PG + T++  
Sbjct: 156 ALNH---FAMTLANEERQVKAIAVAPGIVDTDMQV 187

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230

 Score =  111 bits (280), Expect = 4e-30
 Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 33/210 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
             ++TGASSG+G E A++    G    +  R+    +     +   + S  V     D++
Sbjct: 3   LIVITGASSGLGAELAKLYDAEGKATYLTGRS----ESKLSTVTNCL-SNNVGYRARDLA 57

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLTHLL 148
           S   V +   + +S     + ++++AG            + I+     N      +   L
Sbjct: 58  SHQEVEQLFEQLDSI---PSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLREL 114

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           +   K       +   +V + S A +   ++                  Y   K A    
Sbjct: 115 VKRYKD------QPVNVVMIMSTAAQQPKAQE---------------STYCAVKWAVKGL 153

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLF 238
            + +   LK   + I A  ++PG + T  +
Sbjct: 154 IESVRLELKGKPMKIIA--VYPGGMATEFW 181

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234

 Score =  111 bits (279), Expect = 6e-30
 Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 30/210 (14%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
             ++TGAS GIG  TAR+L  +G  V +  R+    +   +A+  E+  A    +  DV 
Sbjct: 7   AVLITGASRGIGEATARLLHAKGYRVGLMARD----EKRLQALAAELEGAL--PLPGDVR 60

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLTHLL 148
                 +  +        L+ L+NNAG+    P   L+ +   L   TN  G FL     
Sbjct: 61  EEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHA 120

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           +  +    +     G IVNV S A +  +  G                AY  SK   +  
Sbjct: 121 VPALL--RRGG---GTIVNVGSLAGKNPFKGG---------------AAYNASKFGLLGL 160

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLF 238
           A      L+E  V +   ++ PGS+ T   
Sbjct: 161 AGAAMLDLREANVRVV--NVLPGSVDTGFA 188

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255

 Score =  111 bits (280), Expect = 6e-30
 Identities = 59/218 (27%), Positives = 85/218 (38%), Gaps = 31/218 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  AIV G + G+G  T R L   G  V++  RN +    +RE         +V A+  
Sbjct: 7   QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRS 61

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           D++ L  +    +        +++L  NAG+    PF  +S+ + + QFA N  G F   
Sbjct: 62  DIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTV 121

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             L   ++         G IV  SS               + DE  +     Y  SK A 
Sbjct: 122 QRLTPLIR-------EGGSIVFTSS---------------VADEGGHPGMSVYSASKAAL 159

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI 243
           +  A  LA  L   G  I  NS+ PG I T      GI
Sbjct: 160 VSFASVLAAELLPRG--IRVNSVSPGFIDTPTKGVAGI 195

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260

 Score =  111 bits (280), Expect = 7e-30
 Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 29/209 (13%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+V+G + G+G    R +   G  V+        G    +A+  E+       + LDV+
Sbjct: 9   VALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEG----KAMAAELA-DAARYVHLDVT 63

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTHLL 148
             A  +       +    L++L+NNAGI  + +    +    +     N  G FL    +
Sbjct: 64  QPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAV 123

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           +  MK+     +  G I+N+SS         G+            +   Y  +K A    
Sbjct: 124 VKPMKE-----AGRGSIINISSIE-------GLA--------GTVACHGYTATKFAVRGL 163

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNL 237
            K  A  L   G  I  NS+HPG + T +
Sbjct: 164 TKSTALELGPSG--IRVNSIHPGLVKTPM 190

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254

 Score =  111 bits (279), Expect = 8e-30
 Identities = 55/213 (25%), Positives = 79/213 (37%), Gaps = 27/213 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           T    I   A  GIG +T+R L  R +   + +  +     + E      P   +     
Sbjct: 4   TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELK-AINPKVNITFHTY 62

Query: 88  DVS-SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTH 146
           DV+  +A  +K   +   Q + ++ILIN AGI+          IE   A N  G    T 
Sbjct: 63  DVTVPVAESKKLLKKIFDQLKTVDILINGAGIL------DDHQIERTIAINFTGLVNTTT 116

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
            +LD   K  +K    G I N+ S         G          A +    Y  SK A +
Sbjct: 117 AILDFWDK--RKGGPGGIIANICSVT-------GFN--------AIHQVPVYSASKAAVV 159

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                LAK     G  +TA S++PG   T L  
Sbjct: 160 SFTNSLAKLAPITG--VTAYSINPGITRTPLVH 190

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280

 Score =  111 bits (281), Expect = 9e-30
 Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 31/220 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE-IPSAKVDAME 86
           +  T I+TG+S+GIG  TA + A  G +V +  R+    ++ R+ I+K  +   +V+++ 
Sbjct: 5   SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 64

Query: 87  LDVSSLASVRKFASEYNSQ-GRPLNILINNAGI-MASPFMLSKDNIELQ-----FATNHL 139
            DV++     +  +    Q G+ +++L+NNAG  +   F  +  +  +         N  
Sbjct: 65  ADVTTEDGQDQIINSTLKQFGK-IDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQ 123

Query: 140 GHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
               +T  +   +  +       G IVNVSS         G +        A   F  Y 
Sbjct: 124 AVIEMTKKVKPHLVASK------GEIVNVSSIVA------GPQ--------AQPDFLYYA 163

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +K A   + +  A  L + G  I  NS+ PG + T    
Sbjct: 164 IAKAALDQYTRSTAIDLAKFG--IRVNSVSPGMVETGFTN 201

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255

 Score =  110 bits (278), Expect = 1e-29
 Identities = 59/222 (26%), Positives = 87/222 (39%), Gaps = 39/222 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
            G  A+VTGAS GIG   A+ LA  G  V +   +    K+  E  V EI S      ++
Sbjct: 6   KGKVALVTGASRGIGRAIAKRLANDGALVAI---HYGNRKEEAEETVYEIQSNGGSAFSI 62

Query: 86  ELDVSSLASVRKFASE-------YNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFAT 136
             ++ SL  V    S             +  +ILINNAGI   +     ++   +   + 
Sbjct: 63  GANLESLHGVEALYSSLDNELQNRTGSTK-FDILINNAGIGPGAFIEETTEQFFDRMVSV 121

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG 196
           N    F +    L  ++          RI+N+SS A R +                  F 
Sbjct: 122 NAKAPFFIIQQALSRLR-------DNSRIINISSAATRISLP---------------DFI 159

Query: 197 AYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF 238
           AY  +K A       LAK L   G  IT N++ PG + T++ 
Sbjct: 160 AYSMTKGAINTMTFTLAKQLGARG--ITVNAILPGFVKTDMN 199

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270

 Score =  111 bits (279), Expect = 1e-29
 Identities = 54/213 (25%), Positives = 82/213 (38%), Gaps = 34/213 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
             +VTG   GIG    R     G  V++  ++ + G     A+ +E+P A    +  DV+
Sbjct: 11  VVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGG----RALEQELPGAV--FILCDVT 64

Query: 91  SLASVRKFASEYNSQ-GRPLNILINNAGIMASPFML---SKDNIELQFATNHLGHFLLTH 146
               V+   SE   + GR L+ ++NNAG    P      S          N LG + LT 
Sbjct: 65  QEDDVKTLVSETIRRFGR-LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTK 123

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
           L L  ++K+       G ++N+SS         G                 Y  +K A  
Sbjct: 124 LALPYLRKSQ------GNVINISSLV-------GAI--------GQAQAVPYVATKGAVT 162

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
              K LA      G  +  N + PG+I T L+ 
Sbjct: 163 AMTKALALDESPYG--VRVNCISPGNIWTPLWE 193

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297

 Score =  111 bits (280), Expect = 2e-29
 Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 29/218 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE-IPSAKVDAME 86
           +G + I+TG+S+GIG   A + A  G  V +  RN    ++ ++ I+K  +P+ K++A+ 
Sbjct: 25  SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 84

Query: 87  LDVSSLASVRKFASEYNSQ-GRPLNILINNAGIMASPFML----SKDNIELQFATNHLGH 141
            DV+  +      +   ++ G+ ++IL+NNAG   +          +  +  F  N    
Sbjct: 85  ADVTEASGQDDIINTTLAKFGK-IDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAV 143

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQS 201
             +T    + + KT       G IVNVSS         G +        A++ +  Y  +
Sbjct: 144 IEMTQKTKEHLIKTK------GEIVNVSSIV------AGPQ--------AHSGYPYYACA 183

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           K A   + +  A  L + G  +  NS+ PG++ T    
Sbjct: 184 KAALDQYTRCTAIDLIQHG--VRVNSVSPGAVATGFMG 219

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247

 Score =  109 bits (276), Expect = 2e-29
 Identities = 60/218 (27%), Positives = 88/218 (40%), Gaps = 43/218 (19%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELD 88
            A++TGASSGIG  TAR LA  G  V +A R      +   A+  E+ +A  KV  +ELD
Sbjct: 9   VALITGASSGIGEATARALAAEGAAVAIAARR----VEKLRALGDELTAAGAKVHVLELD 64

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLTH 146
           V+    V    +        L+IL+NNAGIM   P       +      TN LG   +T 
Sbjct: 65  VADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTR 124

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
             L  + +       +G +V +SS A R                       Y  +K    
Sbjct: 125 AALPHLLR------SKGTVVQMSSIAGRVNVRNA---------------AVYQATKFG-- 161

Query: 207 LHA------KELAKHLKEDGVNITANSLHPGSIVTNLF 238
           ++A      +E+ +     GV +    + PG+  T L 
Sbjct: 162 VNAFSETLRQEVTER----GVRVV--VIEPGTTDTELR 193

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255

 Score =  109 bits (276), Expect = 3e-29
 Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 37/219 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  AI+TGA +GIG E A   A  G  V+++  N  A   V + I +     +  A   
Sbjct: 10  DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRC 67

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGI-MASPFMLSKDNIELQFATNHLGHFLLT 145
           D++S   +   A    S+ G+ ++IL+NNAG     PF +   +    +  N    F L+
Sbjct: 68  DITSEQELSALADFAISKLGK-VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLS 126

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
            L+   M+K     +  G I+ ++S A                     +  +Y  SK A 
Sbjct: 127 QLVAPEMEK-----NGGGVILTITSMA-------AEN--------KNINMTSYASSK-AA 165

Query: 206 ILH-----AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             H     A +L +       NI  N + PG+I+T+  +
Sbjct: 166 ASHLVRNMAFDLGEK------NIRVNGIAPGAILTDALK 198

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274

 Score =  109 bits (276), Expect = 3e-29
 Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 32/239 (13%)

Query: 8   GPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGK 67
            PS    SS   + ++ + G    A+ TGA  GIG   A  L  RG  V++   N  +  
Sbjct: 2   APSADITSSGPSDASKPLAGK--VALTTGAGRGIGRGIAIELGRRGASVVV---NYGSSS 56

Query: 68  DVREAIVKEIPSA--KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM 124
              E +V E+     +  A++ D+S  + V     +  S    L+ +++N+G+      +
Sbjct: 57  KAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDEL 116

Query: 125 -LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF 183
            ++++  +  F  N  G F +    L   +       R GRI+  SS A           
Sbjct: 117 EVTQELFDKVFNLNTRGQFFVAQQGLKHCR-------RGGRIILTSSIAAVMTGIPN--- 166

Query: 184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG 242
                         Y  SK A     +  A         +T N + PG + T++F  N 
Sbjct: 167 -----------HALYAGSKAAVEGFCRAFAVDCG--AKGVTVNCIAPGGVKTDMFDENS 212

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246

 Score =  109 bits (275), Expect = 3e-29
 Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 34/214 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   I+T A+ GIG   A   A  G  VI    N +  +++ +          +    L
Sbjct: 5   DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYP-------GIQTRVL 57

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML--SKDNIELQFATNHLGHFLLT 145
           DV+    + +FA+E     R L++L N AG +    +L   + + +     N    +L+ 
Sbjct: 58  DVTKKKQIDQFANEV---ER-LDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMI 113

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L  M    QKS   G I+N+SS A                    N    Y  +K A 
Sbjct: 114 KAFLPKMLA--QKS---GNIINMSSVASSVK-------------GVVNRC-VYSTTKAAV 154

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           I   K +A    + G  I  N + PG++ T   +
Sbjct: 155 IGLTKSVAADFIQQG--IRCNCVCPGTVDTPSLQ 186

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273

 Score =  109 bits (276), Expect = 4e-29
 Identities = 58/217 (26%), Positives = 81/217 (37%), Gaps = 35/217 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G TA+VTG S GIG      LA  G  V    RN     +  E   ++     V+    
Sbjct: 20  KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVC 77

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLL 144
           D+ S     K            LNIL+NNAG+ +       ++ +  +   TN    + L
Sbjct: 78  DLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHL 137

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           + +    +K      S+ G ++ +SS               I   SA  S   Y  SK A
Sbjct: 138 SQIAYPLLKA-----SQNGNVIFLSS---------------IAGFSALPSVSLYSASKGA 177

Query: 205 NIL----HAKELAKHLKEDGVNITANSLHPGSIVTNL 237
                   A E AK       NI  NS+ PG I+T L
Sbjct: 178 INQMTKSLACEWAKD------NIRVNSVAPGVILTPL 208

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264

 Score =  109 bits (275), Expect = 4e-29
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 40/221 (18%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           T    +++G    +GT  AR  A +G  +++A R +   +DV + +       +  ++  
Sbjct: 10  TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT--GRRALSVGT 67

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGIM--ASPFM-LSKDNIELQFATNHLGHFL 143
           D++  A V     E     GR ++++INNA  +    PF   + +++         G   
Sbjct: 68  DITDDAQVAHLVDETMKAYGR-VDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALR 126

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
           L       +++       +G +VNV+S                    +   +GAY  +K 
Sbjct: 127 LIQGFTPALEE------SKGAVVNVNSMV-------VRH--------SQAKYGAYKMAK- 164

Query: 204 ANILH-----AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           + +L      A EL +        I  NS+ PG I     +
Sbjct: 165 SALLAMSQTLATELGEK------GIRVNSVLPGYIWGGTLK 199

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244

 Score =  108 bits (273), Expect = 5e-29
 Identities = 48/217 (22%), Positives = 90/217 (41%), Gaps = 43/217 (19%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +GL A+VTGA  GIG +T + L   G  V+   R  +    + +          ++ + +
Sbjct: 6   SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCV 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLT 145
           D+    +  K          P+++L+NNA ++   PF+ ++K+  +  F+ N    F ++
Sbjct: 60  DLGDWDATEKALGGIG----PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVS 115

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
            ++   M    +     G IVNVSS               +     + +   Y  +K A 
Sbjct: 116 QMVARDMIN--RGVP--GSIVNVSS---------------MVAHVTFPNLITYSSTKGA- 155

Query: 206 ILH-----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
           +       A EL  H       I  NS++P  ++T++
Sbjct: 156 MTMLTKAMAMELGPH------KIRVNSVNPTVVLTDM 186

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273

 Score =  109 bits (275), Expect = 6e-29
 Identities = 45/211 (21%), Positives = 76/211 (36%), Gaps = 31/211 (14%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A++TGA+SGIG   A+     G  V +  R         +A + EI       ++ D +
Sbjct: 31  IAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVL----DAAIAEIG-GGAVGIQADSA 85

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLTHLL 148
           +LA + +   +  ++   +++L  NAG     P   ++++  +  F  N  G        
Sbjct: 86  NLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKA 145

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           L  +        R   +V   S                   +   +F  Y  SK A    
Sbjct: 146 LPLLA-------RGSSVVLTGS---------------TAGSTGTPAFSVYAASKAALRSF 183

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           A+     LK+ G  I  N+L PG   T    
Sbjct: 184 ARNWILDLKDRG--IRINTLSPGPTETTGLV 212

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251

 Score =  108 bits (272), Expect = 8e-29
 Identities = 30/228 (13%), Positives = 62/228 (27%), Gaps = 39/228 (17%)

Query: 15  SSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIV 74
              +  +           +V G S  +G E  +    +  + I          D      
Sbjct: 8   HHHSSGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH----- 62

Query: 75  KEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFM-LSKDNIE 131
                    +  +  S    ++    + NS+   ++  +  AG     +        +++
Sbjct: 63  ---------SFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVK 113

Query: 132 LQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESA 191
                N    F   H+    + +        G  V   + A        +          
Sbjct: 114 GMIDMNLYSAFASAHIGAKLLNQG-------GLFVLTGASA-------ALN--------R 151

Query: 192 YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +   AYG +K A     K+LA          T+  + P ++ T   R
Sbjct: 152 TSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNR 199

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250

 Score =  107 bits (271), Expect = 1e-28
 Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            AIVTGASSG G   A     RG  V     +    ++            KV  +  DV+
Sbjct: 4   VAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYA-DKVLRVRADVA 62

Query: 91  SLASVRKFASEYNSQ-GRPLNILINNAGIM----ASPFM-LSKDNIELQFATNHLGHFLL 144
               V    +    Q G  +++L+NNAGI     A        +  +   A N  G FL 
Sbjct: 63  DEGDVNAAIAATMEQFGA-IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLG 121

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
              +L  M          G IVN++S A        +         A+    AY  SK A
Sbjct: 122 CRAVLPHMLL-----QGAGVIVNIASVA-------SLV--------AFPGRSAYTTSKGA 161

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +   K +A      G  I  N++ PG I T + +
Sbjct: 162 VLQLTKSVAVDYAGSG--IRCNAVCPGMIETPMTQ 194

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248

 Score =  108 bits (271), Expect = 1e-28
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 13/154 (8%)

Query: 30  LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV 89
           +  +VTGA++G G    R    +G  VI   R     ++  + +  E+    +   +LDV
Sbjct: 1   MIVLVTGATAGFGECITRRFIQQGHKVIATGRR----QERLQELKDEL-GDNLYIAQLDV 55

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFM-LSKDNIELQFATNHLGHFLLTH 146
            + A++ +  +   ++   ++IL+NNAG+     P    S ++ E    TN+ G   +T 
Sbjct: 56  RNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTR 115

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
            +L  M +        G I+N+ S A  + Y+ G
Sbjct: 116 AVLPGMVE-----RNHGHIINIGSTAGSWPYAGG 144

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262

 Score =  108 bits (272), Expect = 1e-28
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 31/230 (13%)

Query: 13  SASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA 72
           S+    ++       +G  A+VTGAS GIG   AR L   G  V++  R++        A
Sbjct: 13  SSGHIDDDDKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKL----RA 68

Query: 73  IVKEIPSA--KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFM-LSK 127
           + +EI +A  + ++   D+S   ++  FA+   +     ++L+NNAG+     P   +  
Sbjct: 69  VEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKP 128

Query: 128 DNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN 187
              +   A N    +LL       M     K    G I+N+SS A       G       
Sbjct: 129 AEWDALIAVNLKAPYLLLRAFAPAMIA--AKR---GHIINISSLA-------GK---NPV 173

Query: 188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            + A     AY  SK          A+ L++    +  + + PGS+ T  
Sbjct: 174 ADGA-----AYTASKWGLNGLMTSAAEELRQH--QVRVSLVAPGSVRTEF 216

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244

 Score =  107 bits (270), Expect = 1e-28
 Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 43/217 (19%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   +VTGA  GIG  T + L   G  V+   R  A    +            ++ + +
Sbjct: 6   AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCV 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLT 145
           D+    +  +          P+++L+NNA +    PF+ ++K+  +  F  N      ++
Sbjct: 60  DLGDWEATERALGSVG----PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVS 115

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
            ++   +          G IVNVSS                  + A  +   Y  +K A 
Sbjct: 116 QIVARGLI----ARGVPGAIVNVSS---------------QCSQRAVTNHSVYCSTKGA- 155

Query: 206 ILH-----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
           +       A EL  H       I  N+++P  ++T++
Sbjct: 156 LDMLTKVMALELGPH------KIRVNAVNPTVVMTSM 186

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261

 Score =  107 bits (271), Expect = 2e-28
 Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 28/213 (13%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A++TGA SG G   A+  A  G  V++  R+ A      E +  EI      A+  D+S
Sbjct: 11  VALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGA----ERVAGEIG-DAALAVAADIS 65

Query: 91  SLASVRKFASEYNSQ-GRPLNILINNAGIMASP---FMLSKDNIELQFATNHLGHFLLTH 146
             A V        S+ G+ ++IL+NNAGI   P    ++  +  +     N  G +L+T 
Sbjct: 66  KEADVDAAVEAALSKFGK-VDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTS 124

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
            L+   K+      +E  I+NV+S           R           +   Y  +K   +
Sbjct: 125 KLIPHFKE-NGAKGQECVILNVASTG-------AGR--------PRPNLAWYNATKGWVV 168

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
              K LA  L      I   +L+P +  T L  
Sbjct: 169 SVTKALAIELAPAK--IRVVALNPVAGETPLLT 199

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279

 Score =  108 bits (271), Expect = 2e-28
 Identities = 50/221 (22%), Positives = 84/221 (38%), Gaps = 24/221 (10%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+VTGAS GIG   AR L  +G+ V+   R +   +++            +     D+S
Sbjct: 34  LALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS 93

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLTHLL 148
           +   +    S   SQ   ++I INNAG+      +  S    +  F  N L   + T   
Sbjct: 94  NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREA 153

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
             +MK+        G I+N++S +                    +    Y  +K A  + 
Sbjct: 154 YQSMKERNVDD---GHIININSMSGHRVL-------------PLSVTHFYSATKYA--VT 195

Query: 209 A--KELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGD 247
           A  + L + L+E   +I A  + PG + T       +   D
Sbjct: 196 ALTEGLRQELREAQTHIRATCISPGVVETQFA--FKLHDKD 234

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272

 Score =  108 bits (271), Expect = 2e-28
 Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 28/215 (13%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELD 88
             +VTG S GIG    R+ A +G  V +   N AA ++  +A+V  I  +  +  A+  D
Sbjct: 28  VVLVTGGSRGIGAAVCRLAARQGWRVGV---NYAANREAADAVVAAITESGGEAVAIPGD 84

Query: 89  VSSLASVRK-FASEYNSQGRPLNILINNAGIM--ASPFM-LSKDNIELQFATNHLGHFLL 144
           V + A +   F++     GR L+ L+NNAGI+        +S + IE     N  G  L 
Sbjct: 85  VGNAADIAAMFSAVDRQFGR-LDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILC 143

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
               +  M +    S + G IVNVSS A                  +   +  Y  SK A
Sbjct: 144 AAEAVRRMSR--LYSGQGGAIVNVSSMAAILG--------------SATQYVDYAASKAA 187

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                  LA+ +  +G  I  N++ PG I T+L  
Sbjct: 188 IDTFTIGLAREVAAEG--IRVNAVRPGIIETDLHA 220

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267

 Score =  107 bits (270), Expect = 2e-28
 Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 27/213 (12%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
             ++TG  SG+G  TA  LA  G  + +   +    +  + A+++  P A+V     DVS
Sbjct: 15  VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVS 74

Query: 91  SLASVRKFASEYNSQ-GRPLNILINNAGIM--ASPFM-LSKDNIELQFATNHLGHFLLTH 146
             A V  + +    + GR ++   NNAGI    +P    +    +   + N  G FL   
Sbjct: 75  DEAQVEAYVTATTERFGR-IDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLE 133

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
            +L  M++  Q S   G +VN +S         GIR           +   Y  +K   +
Sbjct: 134 KVLKIMRE--QGS---GMVVNTASVG-------GIR--------GIGNQSGYAAAKHGVV 173

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
              +  A      G  I  N++ PG+I T +  
Sbjct: 174 GLTRNSAVEYGRYG--IRINAIAPGAIWTPMVE 204

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256

 Score =  107 bits (269), Expect = 2e-28
 Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 29/209 (13%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+VTGA  GIG   A  L   G  V +A  N A  K V   I +        A+++DVS
Sbjct: 4   VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVS 61

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLTHLL 148
               V     +        ++++NNAG+  ++P   ++ + ++  +  N  G        
Sbjct: 62  DRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAA 121

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKLANI 206
           ++  KK  +     G+I+N  S+A      E          + Y+S  F   G ++ A  
Sbjct: 122 VEAFKK--EG--HGGKIINACSQAGHVGNPE---------LAVYSSSKFAVRGLTQTA-- 166

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVT 235
             A++LA         IT N   PG + T
Sbjct: 167 --ARDLAPL------GITVNGYCPGIVKT 187

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283

 Score =  107 bits (270), Expect = 3e-28
 Identities = 64/218 (29%), Positives = 91/218 (41%), Gaps = 31/218 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
               A++TGA SGIG  TA  LA  GV V    R     ++V + IV      +  A+E 
Sbjct: 27  PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA--GGQAIALEA 84

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGIM--ASPFM-LSKDNIELQFATNHLGHFL 143
           DVS    +R    +   + G  L+I++ NAGI    +P   L     +   A N  G FL
Sbjct: 85  DVSDELQMRNAVRDLVLKFGH-LDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFL 143

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQS 201
             HL +  +K+  +     G IV VSS         G R       +AY +         
Sbjct: 144 TLHLTVPYLKQ--RGG---GAIVVVSSIN-------GTRTFTTPGATAYTATKAAQVAIV 191

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           +      A EL KH      +I  N++ PG+I TN+  
Sbjct: 192 QQL----ALELGKH------HIRVNAVCPGAIETNISD 219

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244

 Score =  106 bits (268), Expect = 3e-28
 Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 37/219 (16%)

Query: 31  TAIVTGASSGIGTETARVLALRGVH-------VIMAVRNMAAGKDVREAIVKEIPSA--K 81
             ++TGA  GIG   A   A    H       ++++ R  A      E I  E  +    
Sbjct: 4   ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADL----EKISLECRAEGAL 59

Query: 82  VDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHL 139
            D +  D+S +A VR+  +    +   ++ L+NNAG+        L++++ +    TN  
Sbjct: 60  TDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLK 119

Query: 140 GHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
           G F LT  L   M++  Q S   G I  ++S A   A+                    Y 
Sbjct: 120 GTFFLTQALFALMER--QHS---GHIFFITSVAATKAFRHS---------------SIYC 159

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF 238
            SK       + +  + ++   N+    + PG++ T ++
Sbjct: 160 MSKFGQRGLVETMRLYARKC--NVRITDVQPGAVYTPMW 196

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207

 Score =  105 bits (265), Expect = 3e-28
 Identities = 38/215 (17%), Positives = 77/215 (35%), Gaps = 41/215 (19%)

Query: 30  LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV 89
           +  ++TGA+ G+G   AR  AL+G  ++++ R   A  ++   +          A+  D+
Sbjct: 1   MRVLITGATGGLGGAFAR--ALKGHDLLLSGRRAGALAELAREV-------GARALPADL 51

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLTHL 147
           +     +    E    G  L++L++  G    +      +D +E   A +     L    
Sbjct: 52  ADELEAKALLEEA---GP-LDLLVHAVGKAGRASVREAGRDLVEEMLAAH----LLTAAF 103

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
           +L   +       +  R V   +                        F AY  +K A   
Sbjct: 104 VLKHARF-----QKGARAVFFGAYP-------RYV--------QVPGFAAYAAAKGALEA 143

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG 242
           + +   K L  +GV++    +   ++ T L+   G
Sbjct: 144 YLEAARKELLREGVHLVL--VRLPAVATGLWAPLG 176

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283

 Score =  107 bits (270), Expect = 3e-28
 Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 32/243 (13%)

Query: 5   SRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA 64
           ++        +       Q     G  A+VTGA  GIG E A  L  RG  VI+   N A
Sbjct: 5   TQPRGESKYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIV---NYA 61

Query: 65  AGKDVREAIVKEIPSAKVDAMEL--DVSSLASVRK-FASEYNSQGRPLNILINNAGIMA- 120
              +  E +V  I     DA  +  +V  +  + + F       G+ L+I+ +N+G+++ 
Sbjct: 62  NSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK-LDIVCSNSGVVSF 120

Query: 121 SPFM-LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE 179
                ++ +  +  F  N  G F +       ++         GR++ + S   +     
Sbjct: 121 GHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLE-------IGGRLILMGSITGQAKAVP 173

Query: 180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                             Y  SK A    A+ +A  +      IT N + PG I T+++ 
Sbjct: 174 K--------------HAVYSGSKGAIETFARCMAIDMA--DKKITVNVVAPGGIKTDMYH 217

Query: 240 YNG 242
              
Sbjct: 218 AVC 220

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281

 Score =  107 bits (269), Expect = 4e-28
 Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 28/214 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
              TA++TG++SGIG   AR LA  G ++++               V  + S  V     
Sbjct: 24  MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPA 83

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           D++  + +    +    +    +IL+NNAG+           +  +   A N    F   
Sbjct: 84  DMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTI 143

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKL 203
              +  MKK        GRI+N++S AH    S          +SAY +   G  G +K 
Sbjct: 144 RGAIPPMKK-----KGWGRIINIAS-AHGLVASPF--------KSAYVAAKHGIMGLTKT 189

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
                A E+A+        +T NS+ PG ++T L
Sbjct: 190 V----ALEVAES------GVTVNSICPGYVLTPL 213

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266

 Score =  106 bits (268), Expect = 4e-28
 Identities = 51/213 (23%), Positives = 76/213 (35%), Gaps = 27/213 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
              T +VTG + GIG       A  G  +    RN     +      K+    +V     
Sbjct: 13  KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVC 70

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLL 144
           D S      K     +S  G  L+ILINN G   + P +  + ++     +TN    + L
Sbjct: 71  DASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHL 130

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           + L    +K      S  G I+ +SS               I    + +    Y  +K A
Sbjct: 131 SQLAHPLLKA-----SGCGNIIFMSS---------------IAGVVSASVGSIYSATKGA 170

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
               A+ LA     D   I AN++ P  I T L
Sbjct: 171 LNQLARNLACEWASD--GIRANAVAPAVIATPL 201

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259

 Score =  106 bits (268), Expect = 5e-28
 Identities = 45/212 (21%), Positives = 84/212 (39%), Gaps = 32/212 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G +A++TG++ GIG   A      G  V +A  ++   +     I          A+++
Sbjct: 7   EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-----GPAAYAVQM 61

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           DV+   S+    +        L+IL+NNA +   +P + +++++ E  FA N  G     
Sbjct: 62  DVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTL 121

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKL 203
                 M        R G+I+N++S+A R   +           + Y +        ++ 
Sbjct: 122 QAAARQMI----AQGRGGKIINMASQAGRRGEA---------LVAIYCATKAAVISLTQS 168

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           A      +L KH       I  N++ PG +  
Sbjct: 169 A----GLDLIKH------RINVNAIAPGVVDG 190

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260

 Score =  106 bits (267), Expect = 5e-28
 Identities = 49/216 (22%), Positives = 80/216 (37%), Gaps = 29/216 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
               A+VT ++ GIG   AR LA  G HV+++ R           +  E     V     
Sbjct: 13  ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE--GLSVTGTVC 70

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGI--MASPFM-LSKDNIELQFATNHLGHFL 143
            V       +  +   +  G  ++IL++NA +       +  +++  +     N     L
Sbjct: 71  HVGKAEDRERLVAMAVNLHGG-VDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVL 129

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
           +T  ++  M+K        G ++ VSS               +     + + G Y  SK 
Sbjct: 130 MTKAVVPEMEK-----RGGGSVLIVSS---------------VGAYHPFPNLGPYNVSKT 169

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           A +   K LA  L     NI  N L PG I TN  +
Sbjct: 170 ALLGLTKNLAVELAPR--NIRVNCLAPGLIKTNFSQ 203

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256

 Score =  106 bits (267), Expect = 5e-28
 Identities = 55/218 (25%), Positives = 81/218 (37%), Gaps = 43/218 (19%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
               AIVTGA++GIG   A   A  G  V++            EA+   I  A  K   +
Sbjct: 11  NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGA----EAVAAAIRQAGGKAIGL 66

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFMLSKDNIELQFATNHLGHFLL 144
           E +V+              Q   + +L+NNAG     PF +   + E  F  N    F L
Sbjct: 67  ECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRL 126

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG--AYGQSK 202
           + L    M+K     +  G I+N+SS A                     +    +YG SK
Sbjct: 127 SQLAAPHMQK-----AGGGAILNISSMA-----------------GENTNVRMASYGSSK 164

Query: 203 LANILH-----AKELAKHLKEDGVNITANSLHPGSIVT 235
            A + H     A ++          I  N++ PG+I T
Sbjct: 165 -AAVNHLTRNIAFDVGPM------GIRVNAIAPGAIKT 195

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272

 Score =  106 bits (268), Expect = 6e-28
 Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 12/156 (7%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-PSAKVDAMEL 87
             T  +TGA+SG G   AR  A  G  +++  R     ++  +A+  E+    +V  + L
Sbjct: 21  SSTLFITGATSGFGEACARRFAEAGWSLVLTGRR----EERLQALAGELSAKTRVLPLTL 76

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFM-LSKDNIELQFATNHLGHFLL 144
           DV   A++         +   L  LINNAG+     P      D+ +    TN  G    
Sbjct: 77  DVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYS 136

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
           T LLL  +            IVN+ S A ++ Y   
Sbjct: 137 TRLLLPRLI----AHGAGASIVNLGSVAGKWPYPGS 168

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258

 Score =  106 bits (266), Expect = 7e-28
 Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 28/215 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
            G   ++TG+S GIG  TAR+ A  G  V +  R   A     +  +  + +        
Sbjct: 6   KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPAN---IDETIASMRADGGDAAFF 62

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA--SPFM-LSKDNIELQFATNHLGHF 142
             D+++  + ++   E+ ++   +++LINNAG +    P   +     +     N     
Sbjct: 63  AADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVV 122

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG--AYGQ 200
           + T   L  +   A+ S +   +++  S A       G               G   YG 
Sbjct: 123 MTTKFALPHLAAAAKASGQTSAVISTGSIA-------GHT---------GGGPGAGLYGA 166

Query: 201 SKLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           +K       K       +DG  +  N + PG++ T
Sbjct: 167 AKAFLHNVHKNWVDFHTKDG--VRFNIVSPGTVDT 199

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277

 Score =  106 bits (267), Expect = 7e-28
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 31/215 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
                IVTG  SGIG  TA + A  G +V++A  N  A       +  EI  +K   + +
Sbjct: 26  NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAA----VRVANEIG-SKAFGVRV 80

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLL 144
           DVSS         +  ++ GR +++L+NNAG     +   + ++  +   + N  G FL 
Sbjct: 81  DVSSAKDAESMVEKTTAKWGR-VDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLC 139

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           +  ++  M++     +  G I+N +S                    A     AY  SK A
Sbjct: 140 SKYVIPVMRR-----NGGGSIINTTSYT-------ATS--------AIADRTAYVASKGA 179

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                + +A    ++G  I  N++ PG+I +  F 
Sbjct: 180 ISSLTRAMAMDHAKEG--IRVNAVAPGTIDSPYFT 212

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260

 Score =  106 bits (266), Expect = 8e-28
 Identities = 63/215 (29%), Positives = 92/215 (42%), Gaps = 30/215 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAME 86
            G  A+VTG++SGIG   A  LA +G  +++    + A  + VR  +  +    KV    
Sbjct: 3   KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDG 61

Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLL 144
            D+S   +VR        Q   ++IL+NNAGI   +       +  +   A N    F  
Sbjct: 62  ADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHG 121

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSK 202
           T   L  MKK        GRI+N++S AH    S          +SAY +   G  G +K
Sbjct: 122 TAAALPHMKK-----QGFGRIINIAS-AHGLVASAN--------KSAYVAAKHGVVGFTK 167

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           +     A E A         ITAN++ PG + T L
Sbjct: 168 VT----ALETAGQ------GITANAICPGWVRTPL 192

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254

 Score =  106 bits (266), Expect = 9e-28
 Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 33/215 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELD 88
             IVTGA SGIG   A+  AL    V+               IV+E+     +V  ++ D
Sbjct: 9   VVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRL----NQIVQELRGMGKEVLGVKAD 64

Query: 89  VSSLASVRKFASEYNSQ-GRPLNILINNAGIM--ASPFM-LSKDNIELQFATNHLGHFLL 144
           VS    V +F         R +++L NNAGIM   +P   +S +  E   A N    F  
Sbjct: 65  VSKKKDVEEFVRRTFETYSR-IDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYS 123

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           +  ++  M K       +G IVN +S A       GIR           +   Y  +K  
Sbjct: 124 SRAVIPIMLK-----QGKGVIVNTASIA-------GIR--------GGFAGAPYTVAKHG 163

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            I   + +A H  + G  I A ++ PG++ TN+  
Sbjct: 164 LIGLTRSIAAHYGDQG--IRAVAVLPGTVKTNIGL 196

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267

 Score =  106 bits (266), Expect = 9e-28
 Identities = 62/226 (27%), Positives = 92/226 (40%), Gaps = 31/226 (13%)

Query: 17  TAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE 76
           T     Q +  T   AIVTGAS GIG   A  LA  G  V++   N A      E +  +
Sbjct: 15  TENLYFQSMMETNKVAIVTGASRGIGAAIAARLASDGFTVVI---NYAGKAAAAEEVAGK 71

Query: 77  IPSA--KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIEL 132
           I +A  K    + DVS  A+VR+  +        +++L+NNAGIM  +          + 
Sbjct: 72  IEAAGGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDR 131

Query: 133 QFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAY 192
             A N  G F         ++         GRI+N+S+      +               
Sbjct: 132 VIAVNLKGTFNTLREAAQRLR-------VGGRIINMSTSQVGLLHP-------------- 170

Query: 193 NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF 238
            S+G Y  +K         L+K L+  G +IT N++ PG   T+LF
Sbjct: 171 -SYGIYAAAKAGVEAMTHVLSKELR--GRDITVNAVAPGPTATDLF 213

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260

 Score =  105 bits (265), Expect = 1e-27
 Identities = 59/219 (26%), Positives = 85/219 (38%), Gaps = 39/219 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G TA+VTG S GIG      LA  G  V    RN     D       +    KV+A   
Sbjct: 8   EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVC 65

Query: 88  DVSSLASVRKFASEYNSQGR-PLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLL 144
           D+SS +  ++  +   +     LNIL+NNAGI +       + ++  L  + N    + L
Sbjct: 66  DLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHL 125

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           + L    +K      S  G +V +SS               ++   A      YG +K A
Sbjct: 126 SVLAHPFLKA-----SERGNVVFISS---------------VSGALAVPYEAVYGATKGA 165

Query: 205 ------NILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
                  +  A E AK       NI  N + PG I T+L
Sbjct: 166 MDQLTRCL--AFEWAKD------NIRVNGVGPGVIATSL 196

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287

 Score =  106 bits (266), Expect = 1e-27
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 13/171 (7%)

Query: 16  STAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRG---VHVIMAVRNMAAGKDVREA 72
           S   +  + +     T ++TGAS+GIG  TA          + +I+A R +   +++++ 
Sbjct: 22  SQGRKAAERLAKK--TVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKT 79

Query: 73  IVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFM-LSKDN 129
           I +E P+AKV   +LD++    ++ F      + + ++IL+NNAG    +     ++ ++
Sbjct: 80  IDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATED 139

Query: 130 IELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG 180
           I+  F TN      +T  +L   +         G IVN+ S A R AY  G
Sbjct: 140 IQDVFDTNVTALINITQAVLPIFQA-----KNSGDIVNLGSIAGRDAYPTG 185

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244

 Score =  104 bits (262), Expect = 2e-27
 Identities = 38/214 (17%), Positives = 68/214 (31%), Gaps = 39/214 (18%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
                +VTG S GIG     +L     H ++ +    +                +  ++ 
Sbjct: 3   AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSA-----------ENLKFIKA 51

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLT 145
           D++    +              + +  NAGI+       +  ++I+     N        
Sbjct: 52  DLTKQQDITNVLDI-IKNVS-FDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFI 109

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             L + +K           IV   S+                   A  +  AY  SK A 
Sbjct: 110 KGLENNLKV-------GASIVFNGSDQ-------CFI--------AKPNSFAYTLSKGAI 147

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
               K LA  L +    I  N++ PG++ T+L+R
Sbjct: 148 AQMTKSLALDLAKYQ--IRVNTVCPGTVDTDLYR 179

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281

 Score =  105 bits (264), Expect = 3e-27
 Identities = 46/222 (20%), Positives = 75/222 (33%), Gaps = 38/222 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA-KVDAME 86
              T +VTG  SGIG   A  L   G  V++  RN        + +     +   +    
Sbjct: 10  QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEP 69

Query: 87  LDVSSLASVRKFASEYNSQ-GRPLNILINNAGIM--ASPFM-LSKDNIELQFATNHLGHF 142
            D+++     +      +  GR L+ +++ AG      P   +  +        N  G  
Sbjct: 70  TDITNEDETARAVDAVTAWHGR-LHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTM 128

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
            +       M +        G  V +SS               I   + +  FGAYG +K
Sbjct: 129 YVLKHAAREMVR-----GGGGSFVGISS---------------IAASNTHRWFGAYGVTK 168

Query: 203 LANILH-----AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            + + H     A EL          +  NS+ PG I T+L  
Sbjct: 169 -SAVDHLMQLAADELGAS------WVRVNSIRPGLIRTDLVA 203

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270

 Score =  104 bits (263), Expect = 3e-27
 Identities = 51/220 (23%), Positives = 84/220 (38%), Gaps = 32/220 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTG+  GIG   A  L   G  V++   N A      E +V EI +   DA+ +
Sbjct: 17  DGKVALVTGSGRGIGAAVAVHLGRLGAKVVV---NYANSTKDAEKVVSEIKALGSDAIAI 73

Query: 88  --DVSSLASVRK-FASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHF 142
             D+  +  + K F       G  L+I ++N+G+++      ++++  +  F+ N  G F
Sbjct: 74  KADIRQVPEIVKLFDQAVAHFGH-LDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQF 132

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
            +       +          GRIV  SS   +                       Y  SK
Sbjct: 133 FVAREAYRHLT-------EGGRIVLTSSNTSKDFSVPK--------------HSLYSGSK 171

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG 242
            A     +  +K        IT N++ PG  VT++F    
Sbjct: 172 GAVDSFVRIFSKDCG--DKKITVNAVAPGGTVTDMFHEVS 209

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266

 Score =  104 bits (262), Expect = 3e-27
 Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 46/234 (19%)

Query: 13  SASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA 72
           ++ +  +++ +G        ++TGASSGIG   AR  +  G  +++  R        R  
Sbjct: 2   ASMTGGQQMGRGSMKK--LVVITGASSGIGEAIARRFSEEGHPLLLLAR--------RVE 51

Query: 73  IVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNI 130
            +K +        ++DV+   +     +       P + ++NNAG+M          +  
Sbjct: 52  RLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEW 111

Query: 131 ELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES 190
           +  F  N LG       +L  MK  A+     G I+N+SS A +  + +           
Sbjct: 112 QRMFDVNVLGLLNGMQAVLAPMK--ARNC---GTIINISSIAGKKTFPDH---------- 156

Query: 191 AYNSFGAYGQSKLANILHA------KELAKHLKEDGVNITANSLHPGSIVTNLF 238
                 AY  +K A  +HA      +E+A       V +   ++ P ++ T L 
Sbjct: 157 -----AAYCGTKFA--VHAISENVREEVAAS----NVRVM--TIAPSAVKTELL 197

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280

 Score =  104 bits (263), Expect = 4e-27
 Identities = 52/216 (24%), Positives = 72/216 (33%), Gaps = 34/216 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            AIVTGASSGIG   A + A  G  V++  RN  A  ++ + I       +  A+  DV 
Sbjct: 10  IAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG--GGEAAALAGDVG 67

Query: 91  SLASVRKF----ASEYNSQGRPLNILINNAGIMASPFML---SKDNIELQFATNHLGHFL 143
             A            +   G  L+   NNAG + +   +   S +       TN    FL
Sbjct: 68  DEALHEALVELAVRRF---GG-LDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFL 123

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                +  +          G +   SS     A               +     Y  SK 
Sbjct: 124 AAKYQVPAIAA-----LGGGSLTFTSSFVGHTA--------------GFAGVAPYAASKA 164

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             I   + LA  L   G  I  N+L PG   T    
Sbjct: 165 GLIGLVQALAVELGARG--IRVNALLPGGTDTPANF 198

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281

 Score =  104 bits (262), Expect = 4e-27
 Identities = 45/220 (20%), Positives = 77/220 (35%), Gaps = 38/220 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           TG  A++TG +SG+G          G  V +  ++    +++  A            +  
Sbjct: 4   TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVVG 58

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGIMASP---FMLSKDNIELQF----ATNHL 139
           DV SL   ++ A    +  G+ ++ LI NAGI         L +D I+  F      N  
Sbjct: 59  DVRSLQDQKRAAERCLAAFGK-IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVK 117

Query: 140 GHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
           G+       L  +          G +V   S A       G                 Y 
Sbjct: 118 GYIHAVKACLPALVS------SRGSVVFTISNA-------GFY--------PNGGGPLYT 156

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +K A +   +++A  L     ++  N + PG + T+L  
Sbjct: 157 ATKHAVVGLVRQMAFELAP---HVRVNGVAPGGMNTDLRG 193

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271

 Score =  104 bits (262), Expect = 4e-27
 Identities = 57/219 (26%), Positives = 83/219 (37%), Gaps = 30/219 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
            G TA VTG S GIG   A+ LAL G  V +         +  +A+V EI  A  +  A+
Sbjct: 30  AGKTAFVTGGSRGIGAAIAKRLALEGAAVAL---TYVNAAERAQAVVSEIEQAGGRAVAI 86

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFL 143
             D     ++ +   E       L+IL+N+AGI   +P    +  + +   A N    F+
Sbjct: 87  RADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFV 146

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                   +          GRI+ + S         G                 Y  SK 
Sbjct: 147 AIRSASRHLG-------DGGRIITIGSNLAELVPWPG--------------ISLYSASKA 185

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG 242
           A     K LA+ L      IT N +HPGS  T++   +G
Sbjct: 186 ALAGLTKGLARDLG--PRGITVNIVHPGSTDTDMNPADG 222

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285

 Score =  104 bits (262), Expect = 4e-27
 Identities = 44/216 (20%), Positives = 80/216 (37%), Gaps = 30/216 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAI---VKEIPSA--KV 82
            G T  ++G S GIG   A+ +A  G +V +  ++      +   I    KEI  A  + 
Sbjct: 8   RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQA 67

Query: 83  DAMELDVSSLASVRKFASEYNSQ-GRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHL 139
             +  D+    +V    ++   Q G  ++I +NNA  +       +     +L       
Sbjct: 68  LPIVGDIRDGDAVAAAVAKTVEQFGG-IDICVNNASAINLGSIEEVPLKRFDLMNGIQVR 126

Query: 140 GHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYG 199
           G + ++   +  MK           I+ +S                I  E  +     Y 
Sbjct: 127 GTYAVSQSCIPHMKG-----RDNPHILTLSP--------------PIRLEPKWLRPTPYM 167

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
            +K    L A  +A+ L++ G  I +N+L P + V 
Sbjct: 168 MAKYGMTLCALGIAEELRDAG--IASNTLWPRTTVA 201

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258

 Score =  104 bits (261), Expect = 5e-27
 Identities = 48/221 (21%), Positives = 81/221 (36%), Gaps = 39/221 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
               A+VTG+S G+G   A  LA  G ++++   N A  K       +EI     KV  +
Sbjct: 3   QNKCALVTGSSRGVGKAAAIRLAENGYNIVI---NYARSKKAALETAEEIEKLGVKVLVV 59

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFL 143
           + +V   A +++   + +     L++ +NNA      P M L + + +     N      
Sbjct: 60  KANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLF 119

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS-FGAYGQSK 202
                   M+K     +  G IV++SS                     Y   +   G SK
Sbjct: 120 CAQEAAKLMEK-----NGGGHIVSISSLG----------------SIRYLENYTTVGVSK 158

Query: 203 LANIL----HAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            A        A EL+         I  N++  G+I T+  +
Sbjct: 159 AALEALTRYLAVELSPK------QIIVNAVSGGAIDTDALK 193

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260

 Score =  104 bits (261), Expect = 5e-27
 Identities = 57/218 (26%), Positives = 85/218 (38%), Gaps = 35/218 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
               AIVTG +  IG      LA  G  VI+A  + A      E +  E     V ++ +
Sbjct: 12  DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRME--GHDVSSVVM 69

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML---SKDNIELQFATNHLGHFLL 144
           DV++  SV+      + Q   ++IL+  AGI  S       +      Q   N  G F  
Sbjct: 70  DVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRS 129

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
              +   M +  QK    G IV + S +       G+  ++   ++AYN+      SK A
Sbjct: 130 CQAVGRIMLE--QKQ---GVIVAIGSMS-------GLIVNRPQQQAAYNA------SK-A 170

Query: 205 NILH-----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
            +       A E A H       I AN++ P  I T L
Sbjct: 171 GVHQYIRSLAAEWAPH------GIRANAVAPTYIETTL 202

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346

 Score =  105 bits (264), Expect = 5e-27
 Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 28/215 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAI---VKEIPSA--KV 82
            G T  +TGAS GIG   A   A  G ++++A +       +   I    +EI +   K 
Sbjct: 44  AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKA 103

Query: 83  DAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLG 140
               +DV     +     +   +   ++IL+NNA  ++ +  +      ++L    N  G
Sbjct: 104 LPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRG 163

Query: 141 HFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ 200
            +L +   +  +KK     S+   I+N+S           + F             AY  
Sbjct: 164 TYLASKACIPYLKK-----SKVAHILNISPP----LNLNPVWF---------KQHCAYTI 205

Query: 201 SKLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           +K    ++   +A+  K     I  N+L P + + 
Sbjct: 206 AKYGMSMYVLGMAEEFKG---EIAVNALWPKTAIH 237

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258

 Score =  103 bits (259), Expect = 7e-27
 Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 35/213 (16%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELD 88
            A+VTG + GIG   +  LA  G  +  AV ++   ++     +K I +A  K   + LD
Sbjct: 4   VAMVTGGAQGIGRGISEKLAADGFDI--AVADLPQQEEQAAETIKLIEAADQKAVFVGLD 61

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLTH 146
           V+  A+      E   +    ++L+NNAGI    P + +++++++  ++ N    F    
Sbjct: 62  VTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQ 121

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                  +       +G+I+N +S A        I+         +    AY  +K A  
Sbjct: 122 AASRKFDE--LG--VKGKIINAASIA-------AIQ--------GFPILSAYSTTKFAVR 162

Query: 207 L----HAKELAKHLKEDGVNITANSLHPGSIVT 235
                 A+ELA          T N+  PG + T
Sbjct: 163 GLTQAAAQELAPK------GHTVNAYAPGIVGT 189

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277

 Score =  103 bits (260), Expect = 8e-27
 Identities = 62/215 (28%), Positives = 90/215 (41%), Gaps = 31/215 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  AIVTGA +GIG   AR LA  G HV+ A  +  A     +A   +I      A  +
Sbjct: 28  AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAA----DAAATKIG-CGAAACRV 82

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLL 144
           DVS    +        +  G  ++ L+ NAG+  +AS    + ++ +   A N  G +L 
Sbjct: 83  DVSDEQQIIAMVDACVAAFGG-VDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLC 141

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T      M +        G IVN+SS A       G          A    GAYG SK  
Sbjct: 142 TKHAAPRMIE-----RGGGAIVNLSSLA-------GQV--------AVGGTGAYGMSKAG 181

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            I  ++  A  L+  G  I +N+L P  + T + +
Sbjct: 182 IIQLSRITAAELRSSG--IRSNTLLPAFVDTPMQQ 214

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261

 Score =  103 bits (259), Expect = 1e-26
 Identities = 48/217 (22%), Positives = 86/217 (39%), Gaps = 38/217 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM-- 85
            G   ++TG+S+G+G   A   A     V++  R+         ++++EI     +A+  
Sbjct: 6   EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEA---NSVLEEIKKVGGEAIAV 62

Query: 86  ELDVSSLASVRK-FASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHF 142
           + DV+  + V     S     G+ L+++INNAG+        +S  +      TN  G F
Sbjct: 63  KGDVTVESDVINLVQSAIKEFGK-LDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAF 121

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
           L +   +    +        G ++N+SS               ++++  +  F  Y  SK
Sbjct: 122 LGSREAIKYFVE--NDIK--GTVINMSS---------------VHEKIPWPLFVHYAASK 162

Query: 203 LANIL----HAKELAKHLKEDGVNITANSLHPGSIVT 235
               L     A E A         I  N++ PG+I T
Sbjct: 163 GGMKLMTETLALEYAPK------GIRVNNIGPGAINT 193

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262

 Score =  103 bits (258), Expect = 1e-26
 Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 33/218 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   +VTGA   IG  TA  LA  G  + +   N  A +    ++ ++    +  +   
Sbjct: 6   NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVC 63

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGIM--ASPFM-LSKDNIELQFATNHLGHFL 143
           DV+S  +V           G+ ++ L NNAG     +P      D+       N  G F 
Sbjct: 64  DVTSEEAVIGTVDSVVRDFGK-IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFH 122

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQS 201
           +   +   M    Q     GRIVN +S A       G++     + +AY +        +
Sbjct: 123 VLKAVSRQMIT--QNY---GRIVNTASMA-------GVK--GPPNMAAYGTSKGAIIALT 168

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           + A    A +LA +      NI  N++ PG +      
Sbjct: 169 ETA----ALDLAPY------NIRVNAISPGYMGPGFMW 196

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272

 Score =  103 bits (258), Expect = 2e-26
 Identities = 55/216 (25%), Positives = 79/216 (36%), Gaps = 30/216 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
               AIVTGA SG+G   A  LA  G  V +A R + A     +    EI       +  
Sbjct: 27  GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDAL----QETAAEIG-DDALCVPT 81

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGIMASPFML---SKDNIELQFATNHLGHFL 143
           DV+   SVR   +    + GR +++L NNAG  A    +   +    +    TN  G FL
Sbjct: 82  DVTDPDSVRALFTATVEKFGR-VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFL 140

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
            T      MK    +  R GRI+N  S               I+  S       Y  +K 
Sbjct: 141 CTQEAFRVMKA---QEPRGGRIINNGS---------------ISATSPRPYSAPYTATKH 182

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           A     K  +   +     I    +  G+  T + +
Sbjct: 183 AITGLTKSTSLDGRVHD--IACGQIDIGNADTPMAQ 216

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276

 Score =  102 bits (257), Expect = 2e-26
 Identities = 59/217 (27%), Positives = 82/217 (37%), Gaps = 32/217 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTG S GIG   A+ L   G  V +  R+  A  D    +          A+  
Sbjct: 28  AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY---GDCQAIPA 84

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLT 145
           D+SS A  R+ A         L+IL+NNAG    +          E     N    F   
Sbjct: 85  DLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCI 144

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             LL  ++++A       R++N+ S A       GI       E AY    AYG SK A 
Sbjct: 145 QQLLPLLRRSASA-ENPARVINIGSVA-------GIS---AMGEQAY----AYGPSK-AA 188

Query: 206 ILH-----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
           +       AKEL         +I  N + PG   + +
Sbjct: 189 LHQLSRMLAKELVGE------HINVNVIAPGRFPSRM 219

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253

 Score =  101 bits (255), Expect = 3e-26
 Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 44/223 (19%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
                IVTG+  GIG   A  LA  G  V++A  N  A     EA+ K+I +      ++
Sbjct: 8   ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAA----EAVAKQIVADGGTAISV 63

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMAS----PFM-LSKDNIELQFATNHLG 140
            +DVS   S +  A    ++   ++ L+NNA I         + +  +  +   + N  G
Sbjct: 64  AVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDG 123

Query: 141 HFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ 200
               T  +   M K  +     G IVN SS A                   Y++   YG 
Sbjct: 124 ALWCTRAVYKKMTK--RGG---GAIVNQSSTA-------AWL---------YSN--YYGL 160

Query: 201 SKLANIL----HAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           +K+         ++EL         NI  N++ PG I T   R
Sbjct: 161 AKVGINGLTQQLSRELGGR------NIRINAIAPGPIDTEANR 197

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255

 Score =  101 bits (255), Expect = 3e-26
 Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 36/216 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
            G TA+VTG++SGIG   A+VLA  G ++++      A        + EI     K    
Sbjct: 3   KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPA------PALAEIARHGVKAVHH 56

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFL 143
             D+S +A +    +    +   ++IL+NNAGI   +P      ++ +   A N    F 
Sbjct: 57  PADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFH 116

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQS 201
            T L L  M+         GRI+N++S  H    S G        ++AY +   G  G +
Sbjct: 117 GTRLALPGMRA-----RNWGRIINIAS-VHGLVGSTG--------KAAYVAAKHGVVGLT 162

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           K+       E A        N+T N++ PG ++T L
Sbjct: 163 KVV----GLETATS------NVTCNAICPGWVLTPL 188

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281

 Score =  102 bits (256), Expect = 3e-26
 Identities = 51/221 (23%), Positives = 80/221 (36%), Gaps = 36/221 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTG  +G+G   A+ L+  G  V++  R           I        V A+  
Sbjct: 32  EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVC 90

Query: 88  DVSSLASVRK-FASEYNSQGRPLNILINNAGIM--ASPFM-LSKDNIELQFATNHLGHFL 143
           DV     V   FA+      R L++L+NNAG      P   ++ +      A N  G FL
Sbjct: 91  DVGDPDQVAALFAAVRAEFAR-LDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFL 149

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
            T      MK    ++ R GRI+N  S               I+ ++   +   Y  +K 
Sbjct: 150 CTQHAFRMMKA---QTPRGGRIINNGS---------------ISAQTPRPNSAPYTATK- 190

Query: 204 ANILH-----AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             I       A +   H      +I    +  G+  T++  
Sbjct: 191 HAITGLTKSTALDGRMH------DIACGQIDIGNAATDMTA 225

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260

 Score =  101 bits (255), Expect = 3e-26
 Identities = 50/224 (22%), Positives = 81/224 (36%), Gaps = 39/224 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   +VTGAS GIG   A  L   G  V +  R++   + V +         +   +  
Sbjct: 4   NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL--GGQCVPVVC 61

Query: 88  DVSSLASVRKFASE--YNSQGRPLNILINNAGIMASPFMLSKDNIELQ---------FAT 136
           D S  + VR    +     QGR L++L+NNA       + +++    +            
Sbjct: 62  DSSQESEVRSLFEQVDREQQGR-LDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNV 120

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG 196
              GH+  +      M       + +G IV +SS          ++            F 
Sbjct: 121 GLRGHYFCSVYGARLMVP-----AGQGLIVVISSPG-------SLQ----------YMFN 158

Query: 197 A-YGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             YG  K A    A + A  L+  G  ++  SL PG + T L +
Sbjct: 159 VPYGVGKAACDKLAADCAHELRRHG--VSCVSLWPGIVQTELLK 200

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271

 Score =  101 bits (255), Expect = 4e-26
 Identities = 53/214 (24%), Positives = 80/214 (37%), Gaps = 33/214 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            AI+TGA  GIG ET+RVLA  G  V++A            ++             +D++
Sbjct: 13  VAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-----GRGAVHHVVDLT 67

Query: 91  SLASVRKFASEYNSQ-GRPLNILINNAGIMASPFML----SKDNIELQFATNHLGHFLLT 145
           +  SVR          GR L+I+ NNA       ML    + D  +  F  N  G  L+ 
Sbjct: 68  NEVSVRALIDFTIDTFGR-LDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMC 126

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              +  +       +  G IVN+SS                    AY+   AY  +K A 
Sbjct: 127 KYAIPRLIS-----AGGGAIVNISSAT-------AHA--------AYDMSTAYACTKAAI 166

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
               + +A      G  +  N++ PG + T    
Sbjct: 167 ETLTRYVATQYGRHG--VRCNAIAPGLVRTPRLE 198

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276

 Score =  101 bits (255), Expect = 5e-26
 Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 33/217 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +G  A++TGAS+GIG + A   A  G  V +A R+  A + V + I       K   +  
Sbjct: 31  SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV--GGKALPIRC 88

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           DV+    VR    +   +   ++I + NAGI      + +  +  +    TN  G FL  
Sbjct: 89  DVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTA 148

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
                 M    Q     G I+  +S +       G   +     S Y +      SK A 
Sbjct: 149 QAAARAMVD--QG--LGGTIITTASMS-------GHIINIPQQVSHYCT------SK-AA 190

Query: 206 ILH-----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
           ++H     A ELA H       I  NS+ PG I T L
Sbjct: 191 VVHLTKAMAVELAPH------QIRVNSVSPGYIRTEL 221

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274

 Score =  101 bits (254), Expect = 6e-26
 Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 27/215 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAI---VKEIPSA--KV 82
           +G T  +TGAS GIG   A   A  G +V +A ++  A   +   I      + +A  + 
Sbjct: 5   SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQG 64

Query: 83  DAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLG 140
            A++ D+     VR   +        ++IL+NNA  +     +       +L    N  G
Sbjct: 65  LALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARG 124

Query: 141 HFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ 200
            F+     L  + +     +    I+ ++                  + + + +   Y  
Sbjct: 125 SFVCAQACLPHLLQ-----APNPHILTLAPPP-------------SLNPAWWGAHTGYTL 166

Query: 201 SKLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           +K+   L    LA      G  +  N+L P +++ 
Sbjct: 167 AKMGMSLVTLGLAAEFGPQG--VAINALWPRTVIA 199

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269

 Score =  101 bits (254), Expect = 6e-26
 Identities = 48/212 (22%), Positives = 81/212 (38%), Gaps = 39/212 (18%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            AIVTG SSGIG      L   G  V+    +  +  +V             D  ++DV+
Sbjct: 16  VAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNV------------SDHFKIDVT 63

Query: 91  SLASVRKFASEYNSQ-GRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTHL 147
           +   V++   +   + GR ++IL+NNAGI   +   +   +        N  G +L+   
Sbjct: 64  NEEEVKEAVEKTTKKYGR-IDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKY 122

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
            +  M          G I+N++S                    A  +  AY  SK A + 
Sbjct: 123 TIPVMLA-----IGHGSIINIASVQ-------SYA--------ATKNAAAYVTSKHALLG 162

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             + +A         I  N++ PG+I+T +  
Sbjct: 163 LTRSVAIDY---APKIRCNAVCPGTIMTPMVI 191

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256

 Score =  101 bits (253), Expect = 7e-26
 Identities = 48/215 (22%), Positives = 71/215 (33%), Gaps = 34/215 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   +VTG + GIG   A+  A  G  V +        +                  ++
Sbjct: 5   AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEA--------IGGAFFQV 56

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLL 144
           D+       +F  E     GR +++L+NNA I    S   +           N      L
Sbjct: 57  DLEDERERVRFVEEAAYALGR-VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHL 115

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           + L    M+K        G IVNV+S         G+         A     AY  SK  
Sbjct: 116 SALAAREMRK-----VGGGAIVNVASVQ-------GLF--------AEQENAAYNASKGG 155

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +   + LA  L      I  N++ PG+I T    
Sbjct: 156 LVNLTRSLALDLAPLR--IRVNAVAPGAIATEAVL 188

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255

 Score =  100 bits (252), Expect = 1e-25
 Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 35/217 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           TG TA+VTG++ G+G   A  LA  G  VI+         +  + + ++        +  
Sbjct: 8   TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK--GYDAHGVAF 65

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           DV+   ++    S+ +++G  ++ILINNAGI    P + L  +N +    TN    FL++
Sbjct: 66  DVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVS 125

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
                 M    + S   G+I+N+ S               +  ++A  +   Y  +K   
Sbjct: 126 RSAAKRMIA--RNSG--GKIINIGS---------------LTSQAARPTVAPYTAAK-GG 165

Query: 206 ILH-----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
           I       A E A+       NI  N++ PG I+T++
Sbjct: 166 IKMLTCSMAAEWAQF------NIQTNAIGPGYILTDM 196

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260

 Score =  100 bits (252), Expect = 1e-25
 Identities = 39/210 (18%), Positives = 66/210 (31%), Gaps = 31/210 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +    ++TGAS  +G   A  L   G  VI++ R          A V E+  A   A+  
Sbjct: 26  SSAPILITGASQRVGLHCALRLLEHGHRVIISYRT-------EHASVTELRQAGAVALYG 78

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFMLSKDNIELQFATNHLGHFLLTH 146
           D S    +  F     +Q   L  +++NA   +A       DN    F+ + L  +L+  
Sbjct: 79  DFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINL 138

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
                +       S    IV++S                       +   AY  +K    
Sbjct: 139 HCEPLLTA-----SEVADIVHISD---------------DVTRKGSSKHIAYCATKAGLE 178

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTN 236
                 A         +  N + P  ++  
Sbjct: 179 SLTLSFAARF---APLVKVNGIAPALLMFQ 205

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259

 Score =  100 bits (252), Expect = 1e-25
 Identities = 51/216 (23%), Positives = 75/216 (34%), Gaps = 32/216 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
           T  T +V GA   IG   A   A  G +V++         +     V EI        A+
Sbjct: 7   TNRTIVVAGAGRDIGRACAIRFAQEGANVVL---TYNGAAEGAATAVAEIEKLGRSALAI 63

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA--SPFM-LSKDNIELQFATNHLGHF 142
           + D+++ A V    S    +   ++ L++ AG +        + +         N    F
Sbjct: 64  KADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLF 123

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
           L     L  M K        G IV  SS+A R     G                AY  SK
Sbjct: 124 LTAKTALPKMAKG-------GAIVTFSSQAGRDGGGPG--------------ALAYATSK 162

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF 238
            A +   + LAK +   G  I  N++ PG I T   
Sbjct: 163 GAVMTFTRGLAKEV---GPKIRVNAVCPGMISTTFH 195

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264

 Score =  100 bits (251), Expect = 1e-25
 Identities = 52/215 (24%), Positives = 76/215 (35%), Gaps = 40/215 (18%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
                IVTGAS GIG   A      G  VI    +                 AK D +E 
Sbjct: 7   RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGE-------------AKYDHIEC 53

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLL 144
           DV++   V+        + G  +++L+NNAGI        +S          N  G++  
Sbjct: 54  DVTNPDQVKASIDHIFKEYGS-ISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYA 112

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           +   +  M +     SR+  IVN+SS                       +  AY  SK A
Sbjct: 113 SKFAIPYMIR-----SRDPSIVNISSVQ-------ASI--------ITKNASAYVTSKHA 152

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            I   K +A         +  N++ P +I T L R
Sbjct: 153 VIGLTKSIALDY---APLLRCNAVCPATIDTPLVR 184

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263

 Score =   99 bits (250), Expect = 2e-25
 Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 32/212 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +G  AIVTG S GIG   AR L   G  V +A  ++ A + V   +          A+E+
Sbjct: 11  SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL-----ENGGFAVEV 65

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           DV+  ASV     +        ++L  NAG+    P + ++ +  +  F  N  G FL  
Sbjct: 66  DVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLAN 125

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKL 203
            +           +   G IVN +S A +               + Y++  F  +G ++ 
Sbjct: 126 QIACRHFLA--SNTK--GVIVNTASLAAKVGAPL---------LAHYSASKFAVFGWTQA 172

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
                A+E+A        NI  N + PG + T
Sbjct: 173 L----AREMAPK------NIRVNCVCPGFVKT 194

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266

 Score = 99.2 bits (248), Expect = 4e-25
 Identities = 45/214 (21%), Positives = 72/214 (33%), Gaps = 37/214 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTGA+ GIG      L   G  V +A R +A               A    +  
Sbjct: 27  EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGI-------------AADLHLPG 73

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMAS-PFM-LSKDNIELQFATNHLGHFLLT 145
           D+   A          +    L+I++NNAG+++       +  +  L    N    F + 
Sbjct: 74  DLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRIC 133

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              +  M       +  G IVNV+S         G+R               Y  +K A 
Sbjct: 134 RAAIPLMAA-----AGGGAIVNVASCW-------GLR--------PGPGHALYCLTKAAL 173

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
               + +       G  I  N++ P  + T + R
Sbjct: 174 ASLTQCMGMDHAPQG--IRINAVCPNEVNTPMLR 205

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254

 Score = 98.7 bits (247), Expect = 4e-25
 Identities = 53/217 (24%), Positives = 82/217 (37%), Gaps = 37/217 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A VTGA SGIG E  R  A  G  +I+  R  AA     +   +E+ +A    +  
Sbjct: 10  DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAAL----DRAAQELGAAVAARIVA 65

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           DV+   ++   A+E  +    ++IL+N+AGI      +           A N  G F  +
Sbjct: 66  DVTDAEAMTAAAAEAEAVAP-VSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWAS 124

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
                 M          G IVN+ S +       G   ++    S+Y +      SK   
Sbjct: 125 RAFGRAMVA-----RGAGAIVNLGSMS-------GTIVNRPQFASSYMA------SK-GA 165

Query: 206 ILH-----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
           +       A E A         +  N+L PG + T +
Sbjct: 166 VHQLTRALAAEWAGR------GVRVNALAPGYVATEM 196

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276

 Score = 98.9 bits (247), Expect = 7e-25
 Identities = 42/233 (18%), Positives = 76/233 (32%), Gaps = 50/233 (21%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA---KVDA 84
               A++TG +  IG   A  L  +G  V++   +    +   + +V E+ +A       
Sbjct: 10  ECPAAVITGGARRIGHSIAVRLHQQGFRVVV---HYRHSEGAAQRLVAELNAARAGSAVL 66

Query: 85  MELDVSSLASVRK-----FASEYNSQGRPLNILINNAGIMA-SPFMLSKDNIEL------ 132
            + D+S  +S+           + + GR  ++L+NNA     +P +   D          
Sbjct: 67  CKGDLSLSSSLLDCCEDIIDCSFRAFGR-CDVLVNNASAYYPTPLLPGDDTNGAADAKPI 125

Query: 133 ------QFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI 186
                  F +N +    L         +     SR   +VN+                  
Sbjct: 126 DAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCD---------------A 170

Query: 187 NDESAYNSFGAYGQSKLANIL----HAKELAKHLKEDGVNITANSLHPGSIVT 235
             +     F  Y  +K A        A ELA        +I  N++ PG  + 
Sbjct: 171 MTDLPLPGFCVYTMAKHALGGLTRAAALELAPR------HIRVNAVAPGLSLL 217

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249

 Score = 97.9 bits (245), Expect = 7e-25
 Identities = 52/221 (23%), Positives = 80/221 (36%), Gaps = 50/221 (22%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
               A++TG ++GIG   A   A+ G  + +A    A            I +   +V  +
Sbjct: 6   KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA------PEAEAAIRNLGRRVLTV 59

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFL 143
           + DVS    V  F  +  S     +IL+NNAGI    PF  L+ +  +  F  N    FL
Sbjct: 60  KCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFL 119

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ--- 200
           +    +  MK+        GRI+N++S                                 
Sbjct: 120 MAKAFVPGMKR--NGW---GRIINLTSTT-------YWL-------------KIEAYTHY 154

Query: 201 --SKLANIL----HAKELAKHLKEDGVNITANSLHPGSIVT 235
             +K ANI      A +L K        IT N++ P  + T
Sbjct: 155 ISTKAANIGFTRALASDLGKD------GITVNAIAPSLVRT 189

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327

 Score = 99.4 bits (248), Expect = 8e-25
 Identities = 52/228 (22%), Positives = 87/228 (38%), Gaps = 41/228 (17%)

Query: 31  TAIVTGASSGIGTETARVLA---LRGVHVIMAVRNMAAGKDVRE-AIVKEIPSAKVDAME 86
             ++TG SSGIG   A  LA    +   V   +R++     + E A     P   ++ ++
Sbjct: 4   VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQ 63

Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPF-MLSKDNIELQFATNHLGHFLL 144
           LDV    SV        ++GR +++L+ NAG+ +  P   L +D +      N +G   +
Sbjct: 64  LDVRDSKSVAAARERV-TEGR-VDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRM 121

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
               L  MK+  + S   GR++   S                     +N    Y  SK  
Sbjct: 122 LQAFLPDMKR--RGS---GRVLVTGSVGGLMGL-------------PFN--DVYCASK-- 159

Query: 205 NILHAKE-----LAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGD 247
               A E     LA  L   GV+++   +  G + T  F    +   +
Sbjct: 160 ---FALEGLCESLAVLLLPFGVHLSL--IECGPVHTA-FMEKVLGSPE 201

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262

 Score = 98.0 bits (245), Expect = 8e-25
 Identities = 38/217 (17%), Positives = 75/217 (34%), Gaps = 33/217 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAME 86
                ++ G    +G  TA+  AL  V++   +  + A   D    +  E+         
Sbjct: 10  KNKVIVIAGGIKNLGALTAKTFALESVNL--VLHYHQAKDSDTANKLKDELEDQGAKVAL 67

Query: 87  L--DVSSLASVRK-FASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGH 141
              D+S+   V K F       G+ ++I IN  G +   P +  S+   +     N+   
Sbjct: 68  YQSDLSNEEEVAKLFDFAEKEFGK-VDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVA 126

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQS 201
           +         M          G I+ +++ +   AY+                +  Y  +
Sbjct: 127 YFFIKQAAKHMNP-------NGHIITIAT-SLLAAYTGF--------------YSTYAGN 164

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF 238
           K     + +  +K L      I+ N++ PG + T+ F
Sbjct: 165 KAPVEHYTRAASKELM--KQQISVNAIAPGPMDTSFF 199

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303

 Score = 98.9 bits (247), Expect = 1e-24
 Identities = 46/218 (21%), Positives = 75/218 (34%), Gaps = 38/218 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA---KVDA 84
            G  AIVTG ++GIG    + L   G +V++A R +   K   + +   +P     +V  
Sbjct: 17  QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 76

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHF 142
           ++ ++ +   V             +N L+NN G    SP   +S         TN  G F
Sbjct: 77  IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF 136

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
            +   +  +  K        G IVN+           G                  G ++
Sbjct: 137 YMCKAVYSSWMK-----EHGGSIVNIIV-----PTKAGFPL-----------AVHSGAAR 175

Query: 203 LANILH-----AKELAKHLKEDGVNITANSLHPGSIVT 235
            A + +     A E A         I  N + PG I +
Sbjct: 176 -AGVYNLTKSLALEWACS------GIRINCVAPGVIYS 206

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280

 Score = 98.0 bits (245), Expect = 1e-24
 Identities = 45/218 (20%), Positives = 76/218 (34%), Gaps = 36/218 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
               AIVTG   GIG   AR LA  G  + +         +    ++ E+     +V  +
Sbjct: 28  ARPVAIVTGGRRGIGLGIARALAASGFDIAI---TGIGDAEGVAPVIAELSGLGARVIFL 84

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMAS---PFM-LSKDNIELQFATNHLGH 141
             D++ L+S +       ++   ++ L+NNAGI +     F+ L  +N +     N  G 
Sbjct: 85  RADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGT 144

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQS 201
              T  +L  M      +     I+N++S               ++          Y  S
Sbjct: 145 VFFTQAVLKAMLA--SDARASRSIINITS---------------VSAVMTSPERLDYCMS 187

Query: 202 KLANI----LHAKELAKHLKEDGVNITANSLHPGSIVT 235
           K          A  LA+        I    + PG I +
Sbjct: 188 KAGLAAFSQGLALRLAET------GIAVFEVRPGIIRS 219

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257

 Score = 97.4 bits (243), Expect = 2e-24
 Identities = 40/223 (17%), Positives = 81/223 (36%), Gaps = 45/223 (20%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
             +++G ++GIG  T +VL   G  ++          D+R+A            +  D+S
Sbjct: 3   IIVISGCATGIGAATRKVLEAAGHQIVGI--------DIRDA-----------EVIADLS 43

Query: 91  SLASVRKFASEYNSQ-GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLL 149
           +    ++  ++  ++  + ++ L+  AG+           +    + N+ G   L    L
Sbjct: 44  TAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQT-----KVLGNVVSVNYFGATELMDAFL 98

Query: 150 DTMKKTAQKSSREGRIVNVSSEA-------HRFAYSEGIRFDKINDESAYNSFG------ 196
             +KK       +   V +SS A                  ++    +     G      
Sbjct: 99  PALKK-----GHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNL 153

Query: 197 AYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           AY  SK A  +  ++ A    E G  +  N++ PG+  T L +
Sbjct: 154 AYAGSKNALTVAVRKRAAAWGEAG--VRLNTIAPGATETPLLQ 194

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324

 Score = 98.3 bits (245), Expect = 2e-24
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 36/217 (16%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA---KVDAMEL 87
             ++TGASSG G  TA  LA  G  V  ++R++          +          +  +EL
Sbjct: 7   IILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLEL 66

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLT 145
           DV S  SV +   +   +   +++LI+NAG M        + +     +  N L    + 
Sbjct: 67  DVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVN 126

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L  M++  QK    G ++ +SS +        +                Y  +K   
Sbjct: 127 RAALPHMRR--QKH---GLLIWISSSSSAGGTPPYL--------------APYFAAK--- 164

Query: 206 ILHAKE-----LAKHLKEDGVNITANSLHPGSIVTNL 237
              A +      A+ L   G+  +   + PG+  +  
Sbjct: 165 --AAMDAIAVQYARELSRWGIETSI--IVPGAFTSGT 197

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262

 Score = 96.9 bits (242), Expect = 3e-24
 Identities = 56/220 (25%), Positives = 84/220 (38%), Gaps = 44/220 (20%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G + +VTG + GIG   A V A  G +V +A R+ A        + +     KV  ++ 
Sbjct: 9   QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGS-GKVIGVQT 67

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           DVS  A     A     +   ++++  NAG+   +P   ++ + +   FA N  G F   
Sbjct: 68  DVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAV 127

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ----- 200
              LD +       S  GR+V  SS                         G  G      
Sbjct: 128 QACLDALIA-----SGSGRVVLTSSITGPIT-------------------GYPGWSHYGA 163

Query: 201 SKLANIL-----HAKELAKHLKEDGVNITANSLHPGSIVT 235
           +K A  L      A ELA H       IT N++ PG+I+T
Sbjct: 164 TK-AAQLGFMRTAAIELAPH------KITVNAIMPGNIMT 196

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281

 Score = 97.0 bits (242), Expect = 3e-24
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 51/243 (20%)

Query: 17  TAEEVTQG-------IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV 69
           T E  TQG           G +AIV+G + G+G  T R L   G+ V++A      G   
Sbjct: 11  TLEAQTQGPGSMVTIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKG--- 67

Query: 70  REAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDN 129
            +A+  E+   + + +  +V+S  SV       N  GR    ++ + G   +  ++ +D 
Sbjct: 68  -KALADEL-GNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDG 125

Query: 130 IEL---QF----ATNHLGHFLLTHLLLDTMKKTAQKSSRE-GRIVNVSSEAHRFAYSEGI 181
                  F         G + +  L+  ++     + + E G +V  +S     A  EG 
Sbjct: 126 SPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTAS----IAGYEG- 180

Query: 182 RFDKINDESAYNSFG--AYGQSKLANILH-----AKELAKHLKEDGVNITANSLHPGSIV 234
                         G  AY  +K A ++      A++L+         I  N++ PG++ 
Sbjct: 181 ------------QIGQTAYAAAK-AGVIGLTIAAARDLSSA------GIRVNTIAPGTMK 221

Query: 235 TNL 237
           T +
Sbjct: 222 TPI 224

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278

 Score = 96.8 bits (242), Expect = 3e-24
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 38/218 (17%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-PSAKVDAMELDV 89
            AI+TG + GIG  TA++    G  V++A      G    + +   I     +  +  DV
Sbjct: 18  VAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHG----QKVCNNIGSPDVISFVHCDV 73

Query: 90  SSLASVRKF----ASEYNSQGRPLNILINNAGIMASPFM----LSKDNIELQFATNHLGH 141
           +    VR       +++   G+ L+I+  N G++++          ++ +     N  G 
Sbjct: 74  TKDEDVRNLVDTTIAKH---GK-LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGA 129

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQS 201
           FL+       M       +++G IV  +S +                 +       Y  +
Sbjct: 130 FLVAKHAARVMIP-----AKKGSIVFTASIS-------SFT-------AGEGVSHVYTAT 170

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           K A +     L   L E G+ +  N + P  + + L  
Sbjct: 171 KHAVLGLTTSLCTELGEYGIRV--NCVSPYIVASPLLT 206

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293

 Score = 97.3 bits (243), Expect = 3e-24
 Identities = 56/243 (23%), Positives = 86/243 (35%), Gaps = 46/243 (18%)

Query: 7   KGPSGFSASSTAEEVTQGI--DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA 64
           +GP       +AE   + +  D +  + +VTG + GIG   A V A  G +V +A R+  
Sbjct: 17  QGPGSMLVVESAEPAERKVMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPR 76

Query: 65  AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM 124
               V   +  E+ +  V  + LDVS   S    A         L+++  NAGI     +
Sbjct: 77  ELSSVTAEL-GELGAGNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARL 135

Query: 125 L--SKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR 182
              + + +      N  G        L  +       S  GR++  SS            
Sbjct: 136 DTMTPEQLSEVLDVNVKGTVYTVQACLAPLTA-----SGRGRVILTSSITGPVT------ 184

Query: 183 FDKINDESAYNSFGAYGQ-----SKLANILH-----AKELAKHLKEDGVNITANSLHPGS 232
                        G  G      SK A  L      A ELA         +T N++ PG+
Sbjct: 185 -------------GYPGWSHYGASK-AAQLGFMRTAAIELAPR------GVTVNAILPGN 224

Query: 233 IVT 235
           I+T
Sbjct: 225 ILT 227

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264

 Score = 96.1 bits (240), Expect = 5e-24
 Identities = 57/233 (24%), Positives = 86/233 (36%), Gaps = 63/233 (27%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAI-----VKEIPSAKV 82
               A+VTGA SGIG   +  LA  G  V     + AA ++    +      +  P    
Sbjct: 6   RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNH 65

Query: 83  DAMELDVSSLASVRKFASEYNSQ-GRPLNILINNAGIMASPFMLSKDNI-----ELQF-- 134
            A + DVS   + R    +  +   RP +++++ AGI       ++D       E  +  
Sbjct: 66  AAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGI-------TQDEFLLHMSEDDWDK 118

Query: 135 --ATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAY 192
             A N  G FL+T      +     +    G I+N+SS         G            
Sbjct: 119 VIAVNLKGTFLVTQAAAQALVSNGCR----GSIINISSIV-------GKV---------- 157

Query: 193 NSFGAYGQ-----SKLANIL-----HAKELAKHLKEDGVNITANSLHPGSIVT 235
              G  GQ     SK A ++      A+EL +H       I  NS+ PG I T
Sbjct: 158 ---GNVGQTNYAASK-AGVIGLTQTAARELGRH------GIRCNSVLPGFIAT 200

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250

 Score = 95.7 bits (239), Expect = 6e-24
 Identities = 53/217 (24%), Positives = 76/217 (35%), Gaps = 50/217 (23%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +G    VTGA  GIG  TA      G  V    +                         +
Sbjct: 6   SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE------------QYPFATEVM 53

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLT 145
           DV+  A V +      ++   L+ L+N AGI+       LSK++ +  FA N  G F L 
Sbjct: 54  DVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLF 113

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG--AYGQSKL 203
              ++  ++      R G IV V+S+A                 +     G  AYG SK 
Sbjct: 114 QQTMNQFRR-----QRGGAIVTVASDA-----------------AHTPRIGMSAYGASK- 150

Query: 204 ANILH-----AKELAKHLKEDGVNITANSLHPGSIVT 235
           A +         ELA         +  N + PGS  T
Sbjct: 151 AALKSLALSVGLELAGS------GVRCNVVSPGSTDT 181

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260

 Score = 95.7 bits (239), Expect = 7e-24
 Identities = 40/212 (18%), Positives = 78/212 (36%), Gaps = 37/212 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
                ++TGAS GIG    R    R   V+   R++    D             +  +  
Sbjct: 27  QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD-----------PDIHTVAG 75

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           D+S   +  +   E   +   ++ L+NNAG+ +A PF+ +++++ +     N  G F +T
Sbjct: 76  DISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHIT 135

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKL 203
                 M K        G IV++++           +       +  +    G    ++ 
Sbjct: 136 QRAAAEMLKQ-----GSGHIVSITTSL-------VDQPMVGMPSALASLTKGGLNAVTRS 183

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
                A E ++        +  N++ PG I T
Sbjct: 184 L----AMEFSRS------GVRVNAVSPGVIKT 205

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279

 Score = 95.4 bits (238), Expect = 1e-23
 Identities = 56/227 (24%), Positives = 77/227 (33%), Gaps = 58/227 (25%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
              TA VTG SSGIG   AR LA RG+ V    R+        + +        VD    
Sbjct: 23  RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA--GHDVDGSSC 80

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQF---------ATNH 138
           DV+S   V    +    +  P+ IL+N+AG        +                  TN 
Sbjct: 81  DVTSTDEVHAAVAAAVERFGPIGILVNSAGR-------NGGGETADLDDALWADVLDTNL 133

Query: 139 LGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAY 198
            G F +T  +L             GRIVN++S         G +             G  
Sbjct: 134 TGVFRVTREVLRAGGMREAGW---GRIVNIASTG-------GKQ-------------GVM 170

Query: 199 GQ-----SKLANIL-----HAKELAKHLKEDGVNITANSLHPGSIVT 235
                  SK   ++        ELAK        IT N++ PG + T
Sbjct: 171 YAAPYTASK-HGVVGFTKSVGFELAKT------GITVNAVCPGYVET 210

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277

 Score = 95.4 bits (238), Expect = 1e-23
 Identities = 44/215 (20%), Positives = 73/215 (33%), Gaps = 35/215 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
               A +TG  SGIG   A +    G H ++A R++         +       +   + +
Sbjct: 26  RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG-RRCLPLSM 84

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           DV +  +V     +   +   ++ILIN A      P   LS +  +     +  G F ++
Sbjct: 85  DVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVS 144

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
            +L +   +        G IVN+++                    A       G +K A 
Sbjct: 145 RVLYEKFFR-----DHGGVIVNITATLGNRG-------------QALQV--HAGSAK-AA 183

Query: 206 ILH-----AKELAKHLKEDGVNITANSLHPGSIVT 235
           +       A E          NI  NSL PG I  
Sbjct: 184 VDAMTRHLAVEWGPQ------NIRVNSLAPGPISG 212

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287

 Score = 95.4 bits (238), Expect = 1e-23
 Identities = 44/219 (20%), Positives = 70/219 (31%), Gaps = 25/219 (11%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMA--------VRNMAAGKDVREAIVKEIPS 79
                +VTG + G G   A  LA  G  +I+              A     E    E+  
Sbjct: 9   QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEK 68

Query: 80  A--KVDAMELDVSSLASVRKFASEYNSQ-GRPLNILINNAGIMASPFMLSKDNIELQFAT 136
              K    E+DV   A+V +  +   ++ G+ L++++ NAGI      L        F  
Sbjct: 69  TGRKAYTAEVDVRDRAAVSRELANAVAEFGK-LDVVVANAGICPLGAHLPVQAFADAFDV 127

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG 196
           + +G     H  L  +            I+   S A                        
Sbjct: 128 DFVGVINTVHAALPYLTSG-------ASIITTGSVAGL----IAAAQPPGAGGPQGPGGA 176

Query: 197 AYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
            Y  +K     +  +LA  L      I AN +HP ++ T
Sbjct: 177 GYSYAKQLVDSYTLQLAAQLAPQS--IRANVIHPTNVNT 213

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263

 Score = 94.1 bits (235), Expect = 3e-23
 Identities = 49/219 (22%), Positives = 78/219 (35%), Gaps = 50/219 (22%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +G T +VTGA+SGIG     + A  G  ++   R      +   A+      A+  A+  
Sbjct: 5   SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVA 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           DVS   +V    +E   +   L+ + + AG+  ++    L  +  E     N  G FL+ 
Sbjct: 60  DVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVA 119

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ----- 200
               + ++         G +V   S A                       GA+G      
Sbjct: 120 RKAGEVLE-------EGGSLVLTGSVAG---------------------LGAFGLAHYAA 151

Query: 201 SKLANIL----HAKELAKHLKEDGVNITANSLHPGSIVT 235
            KL  +      A ELA+        +  N L PG I T
Sbjct: 152 GKLGVVGLARTLALELARK------GVRVNVLLPGLIQT 184

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236

 Score = 93.1 bits (232), Expect = 3e-23
 Identities = 30/215 (13%), Positives = 56/215 (26%), Gaps = 35/215 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +    IV G    +G+         G  V+    +     D    +              
Sbjct: 2   SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILV----------DGNK 51

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLL 144
           + +         +  + QG  ++ +   AG  A   +       N +L    +     + 
Sbjct: 52  NWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIA 111

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
             L    +K         G +    + A   A                 S   YG +K A
Sbjct: 112 AKLATTHLKPG-------GLLQLTGAAA---AM------------GPTPSMIGYGMAKAA 149

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                  LA        N    ++ P ++ T + R
Sbjct: 150 VHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNR 184

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277

 Score = 94.2 bits (235), Expect = 3e-23
 Identities = 55/244 (22%), Positives = 87/244 (35%), Gaps = 62/244 (25%)

Query: 13  SASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA 72
            +S      +         A+VTGA+SGIG E AR L   G+ V +  R           
Sbjct: 6   HSSGLVPRGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGL----RT 61

Query: 73  IVKEIPSA--KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI 130
            +KE+  A  + D    DV S+  +    +    +  P+++L+NNAG             
Sbjct: 62  TLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGR-------PGGGA 114

Query: 131 -----ELQF----ATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI 181
                +  +     TN  G F +T  +L       + +   GRIVN++S         G 
Sbjct: 115 TAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT---GRIVNIASTG-------GK 164

Query: 182 RFDKINDESAYNSFGAYGQ-----SKLANIL-----HAKELAKHLKEDGVNITANSLHPG 231
           +             G         SK   ++        ELA+        IT N++ PG
Sbjct: 165 Q-------------GVVHAAPYSASK-HGVVGFTKALGLELART------GITVNAVCPG 204

Query: 232 SIVT 235
            + T
Sbjct: 205 FVET 208

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249

 Score = 93.4 bits (233), Expect = 4e-23
 Identities = 47/212 (22%), Positives = 71/212 (33%), Gaps = 45/212 (21%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
                +V  AS GIG   A VL+  G  V +  RN    K      V             
Sbjct: 18  RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVV------------ 65

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
                  +RK       + + ++IL+ NAG   A  F  L+ ++ +    +  L    + 
Sbjct: 66  -----CDLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIV 120

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF--GAYGQSKL 203
              L  MK+        GRIV ++S +             I +    NS      G  K 
Sbjct: 121 RNYLPAMKE-----KGWGRIVAITSFSVI----SP-----IENLYTSNSARMALTGFLKT 166

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
                + E+A +       IT N + PG   T
Sbjct: 167 L----SFEVAPY------GITVNCVAPGWTET 188

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244

 Score = 93.0 bits (232), Expect = 6e-23
 Identities = 32/230 (13%), Positives = 67/230 (29%), Gaps = 51/230 (22%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM-ELDV 89
            A+VT A    G      L   G  V+    + A      E    E  +    A+ E   
Sbjct: 3   IALVTHARHFAGPAAVEALTQDGYTVVCHDASFADA---AERQRFESENPGTIALAEQKP 59

Query: 90  SSL--ASVRKFASEYNSQGRPLNILINNAGI----MASPFM-LSKDNIELQFATNHLGHF 142
             L  A+++            ++ +++N  I       P    S+ +I   F    +   
Sbjct: 60  ERLVDATLQHG-------EA-IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPI 111

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
           LL    +  ++      +    ++ ++S   +               +       YG ++
Sbjct: 112 LLLQSAIAPLRA-----AGGASVIFITSSVGKKP----------LAYNP-----LYGPAR 151

Query: 203 LANILH-----AKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGD 247
            A  +      AK L++        I   ++ P       +        +
Sbjct: 152 -AATVALVESAAKTLSRD------GILLYAIGPNFFNNPTYFPTSDWENN 194

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265

 Score = 93.0 bits (232), Expect = 6e-23
 Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 27/217 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
              T IVTG + GIG    R +A  G +V +  R+ A   +V E + KE    K  A + 
Sbjct: 13  VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQC 71

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           DVS+   V K   + ++   P++ LI NAG+ +  P   L+ ++    +  N  G F   
Sbjct: 72  DVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTC 131

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             +     +      ++G IV  SS + +      +       +  YNS      SK A 
Sbjct: 132 RAVAKLWLQKQ----QKGSIVVTSSMSSQIINQSSLNGSLT--QVFYNS------SK-AA 178

Query: 206 ILH-----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
             +     A E A         I  N+L PG + T+ 
Sbjct: 179 CSNLVKGLAAEWASA------GIRVNALSPGYVNTDQ 209

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256

 Score = 92.6 bits (231), Expect = 8e-23
 Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 63/229 (27%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
           +   A VTG   GIGT   + L   G  V+            R   +++  +      A 
Sbjct: 12  SQRIAYVTGGMGGIGTSICQRLHKDGFRVVA---GCGPNSPRRVKWLEDQKALGFDFYAS 68

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----AT 136
           E +V    S ++   +  ++   +++L+NNAGI       ++D +        +     T
Sbjct: 69  EGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGI-------TRDVVFRKMTREDWQAVIDT 121

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG 196
           N    F +T  ++D M +        GRI+N+SS               +N +      G
Sbjct: 122 NLTSLFNVTKQVIDGMVE-----RGWGRIINISS---------------VNGQK-----G 156

Query: 197 AYGQ-----SKLANIL-----HAKELAKHLKEDGVNITANSLHPGSIVT 235
            +GQ     +K A I       A+E+A         +T N++ PG I T
Sbjct: 157 QFGQTNYSTAK-AGIHGFTMSLAQEVATK------GVTVNTVSPGYIGT 198

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302

 Score = 93.4 bits (233), Expect = 9e-23
 Identities = 49/215 (22%), Positives = 77/215 (35%), Gaps = 34/215 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A +TG  +G+G     +L+  G   ++A R M   K   E I  +    KV A++ 
Sbjct: 25  QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-NKVHAIQC 83

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           DV     V+   SE        NI+INNA     SP   LS +  +        G   +T
Sbjct: 84  DVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVT 143

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             +   + K AQK       +++++                   S +        +K A 
Sbjct: 144 LEIGKQLIK-AQKG---AAFLSITTIYAETG-------------SGF--VVPSASAK-AG 183

Query: 206 ILH-----AKELAKHLKEDGVNITANSLHPGSIVT 235
           +       A E  K+       +  N + PG I T
Sbjct: 184 VEAMSKSLAAEWGKY------GMRFNVIQPGPIKT 212

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454

 Score = 95.4 bits (238), Expect = 9e-23
 Identities = 63/223 (28%), Positives = 91/223 (40%), Gaps = 54/223 (24%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTGA+ GIG   A V A  G  V+    + AA     E + +        A+ L
Sbjct: 212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-----EDLKRVADKVGGTALTL 266

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGIMASPFMLSKDNI-----ELQF----ATN 137
           DV++  +V K  +      G  ++IL+NNAGI       ++D +     E ++    A N
Sbjct: 267 DVTADDAVDKITAHVTEHHGGKVDILVNNAGI-------TRDKLLANMDEKRWDAVIAVN 319

Query: 138 HLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGA 197
            L    LT  L+             GR++ +SS A       GI              G 
Sbjct: 320 LLAPQRLTEGLVGNGTI-----GEGGRVIGLSSMA-------GIA-------------GN 354

Query: 198 YGQ-----SKLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
            GQ     +K   I  A+ LA  L + G  IT N++ PG I T
Sbjct: 355 RGQTNYATTKAGMIGLAEALAPVLADKG--ITINAVAPGFIET 395

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266

 Score = 92.6 bits (231), Expect = 9e-23
 Identities = 48/241 (19%), Positives = 91/241 (37%), Gaps = 45/241 (18%)

Query: 8   GPSGFSASSTAEEVTQGIDGTGLTAIVTGAS-SGIGTETARVLALRGVHVIMAVRNMAAG 66
           GP   + S   +E+       G   +VT A+ +GIG+ TAR   L G  V+++  +    
Sbjct: 1   GPGSMNLSEAPKEIDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRL 60

Query: 67  KDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ-GRPLNILINNAGI-MASPFM 124
            + R+ +  ++   +V+A+  DV+S  +V    ++   + GR L++L+NNAG+   +P +
Sbjct: 61  GETRDQL-ADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGR-LDVLVNNAGLGGQTPVV 118

Query: 125 -LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF 183
            ++ +  +             T   L   +         G IVN +S         G R 
Sbjct: 119 DMTDEEWDRVLNVTLTSVMRATRAALRYFR----GVDHGGVIVNNASVL-------GWR- 166

Query: 184 DKINDESAYNSFGAYGQ-----SKLANIL----HAKELAKHLKEDGVNITANSLHPGSIV 234
                         + Q     +K   +      A E  +        +  N++ P    
Sbjct: 167 ------------AQHSQSHYAAAKAGVMALTRCSAIEAVEF------GVRINAVSPSIAR 208

Query: 235 T 235
            
Sbjct: 209 H 209

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257

 Score = 92.2 bits (230), Expect = 1e-22
 Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 24/210 (11%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
                I+TG SSG+G   A   A  G  V++  R     ++ +  I +     ++  +++
Sbjct: 5   KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF--PGQILTVQM 62

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           DV +   ++K   + + +   ++ILINNA      P   LS +           G F  +
Sbjct: 63  DVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCS 122

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             +         +   +G I+N+ +     A                        +K   
Sbjct: 123 QAIGKYWI----EKGIKGNIINMVATYAWDA-------------GPG--VIHSAAAKAGV 163

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           +   K LA         I  N++ PG I  
Sbjct: 164 LAMTKTLAVEWGRK-YGIRVNAIAPGPIER 192

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257

 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 57/224 (25%), Positives = 86/224 (38%), Gaps = 43/224 (19%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
                IVTGASSG+G    R+LA  G  V+       AG    E    E+  A V     
Sbjct: 6   KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAG----EEPAAEL-GAAVRFRNA 60

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKD---NIELQFA----TNHLG 140
           DV++ A      +    +   ++ L+N AG      +L +     ++  FA     N +G
Sbjct: 61  DVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALD-SFARTVAVNLIG 119

Query: 141 HFLLTHLLLDTMKKTAQKSSRE-GRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG--A 197
            F +  L  + M +    +  E G IVN +S A   A+ +G               G  A
Sbjct: 120 TFNMIRLAAEVMSQGEPDADGERGVIVNTASIA---AF-DG-------------QIGQAA 162

Query: 198 YGQSKLA----NILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           Y  SK       +  A+ELA+        I   ++ PG   T +
Sbjct: 163 YAASKGGVAALTLPAARELARF------GIRVVTIAPGIFDTPM 200

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273

 Score = 92.2 bits (230), Expect = 2e-22
 Identities = 58/226 (25%), Positives = 85/226 (37%), Gaps = 39/226 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G TA+VTGA SGIG   A   A  G HV+   R     K+V + I         +A+  
Sbjct: 30  AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADG--GGSAEAVVA 86

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           D++ L      A E  +  R +++L+NNAGI   +P   +S          N    ++L+
Sbjct: 87  DLADLEGAANVAEELAATRR-VDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLS 145

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK--L 203
                 M          GRIV ++S               +       +  AY  SK  +
Sbjct: 146 RSFGTAMLA-----HGSGRIVTIAS---------------MLSFQGGRNVAAYAASKHAV 185

Query: 204 ANI--LHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGD 247
             +    A E A         +  N+L PG +VT        LR D
Sbjct: 186 VGLTRALASEWAGR------GVGVNALAPGYVVTAN---TAALRAD 222

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299

 Score = 92.7 bits (231), Expect = 2e-22
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 48/228 (21%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMA--------VRNMAAGKDVREAIVKEIPS 79
            G  A +TGA+ G G   A  LA  G  +I          V+   +  D     V+++ +
Sbjct: 27  EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA 86

Query: 80  A--KVDAMELDVSSLASVRKFASEYNSQ-GRPLNILINNAGIMASPFMLSKDNIELQF-- 134
              ++ A ++DV    +++    +  +Q GR L+I++ NA + +    L++ + +  +  
Sbjct: 87  LGRRIIASQVDVRDFDAMQAAVDDGVTQLGR-LDIVLANAALASEGTRLNRMDPK-TWRD 144

Query: 135 --ATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAY 192
               N  G ++   + +  +    ++    G IV  SS         G+R          
Sbjct: 145 MIDVNLNGAWITARVAIPHIMA-GKRG---GSIVFTSSIG-------GLR--------GA 185

Query: 193 NSFGAYGQSK-----LANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
            + G Y  SK     L   + A EL         NI  N + P S+ T
Sbjct: 186 ENIGNYIASKHGLHGLMRTM-ALELGPR------NIRVNIVCPSSVAT 226

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241

 Score = 91.2 bits (227), Expect = 2e-22
 Identities = 26/215 (12%), Positives = 65/215 (30%), Gaps = 35/215 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
                +V G    +G+   +    R   V          ++   +++ ++  +  +  + 
Sbjct: 6   EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVV--ENEEASASVIVKMTDSFTEQADQ 63

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLL 144
             + +  +             ++ ++  AG  A   +       N +L +  +     + 
Sbjct: 64  VTAEVGKLLGDQ--------KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTIS 115

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           +HL    +K+        G +    ++A        I                YG +K A
Sbjct: 116 SHLATKHLKEG-------GLLTLAGAKAALDGTPGMI---------------GYGMAKGA 153

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                + LA           A ++ P ++ T + R
Sbjct: 154 VHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNR 188

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247

 Score = 90.6 bits (226), Expect = 4e-22
 Identities = 55/227 (24%), Positives = 86/227 (37%), Gaps = 62/227 (27%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G TA+VTGA+ GIG   A  LA  G  VI++  N    K    +I       K  A+  
Sbjct: 5   AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIAA 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----ATNH 138
           D+S   SV+   +E  +    ++IL+NNA I                    +      N 
Sbjct: 60  DISDPGSVKALFAEIQALTGGIDILVNNASI-------VPFVAWDDVDLDHWRKIIDVNL 112

Query: 139 LGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAY 198
            G F++T    D M+     + + GR+++++S                         G  
Sbjct: 113 TGTFIVTRAGTDQMR----AAGKAGRVISIASNT-------FFA-------------GTP 148

Query: 199 GQ-----SKLANIL-----HAKELAKHLKEDGVNITANSLHPGSIVT 235
                  +K   ++      A EL K+      NITAN++ PG I +
Sbjct: 149 NMAAYVAAK-GGVIGFTRALATELGKY------NITANAVTPGLIES 188

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267

 Score = 91.0 bits (227), Expect = 5e-22
 Identities = 48/217 (22%), Positives = 79/217 (36%), Gaps = 34/217 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTG S G+G   A+ LA  G  V++A RN+    +  + + ++    +  A   
Sbjct: 20  RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRC 78

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGHFLLT 145
           DVS+   V+K       +   L+ ++N AGI    P      D        N  G + + 
Sbjct: 79  DVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVC 138

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
                 +++     S    I+N+ S        E              +  AY  SK   
Sbjct: 139 REAFSLLRE-----SDNPSIINIGS----LTVEEV----------TMPNISAYAASK-GG 178

Query: 206 ILH-----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
           +       AKE  ++       I  N + PG   T +
Sbjct: 179 VASLTKALAKEWGRY------GIRVNVIAPGWYRTKM 209

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269

 Score = 91.1 bits (227), Expect = 5e-22
 Identities = 54/229 (23%), Positives = 84/229 (36%), Gaps = 63/229 (27%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
               A VTG   G+G   +R L   G+ V +   + +   D     +     A     A 
Sbjct: 24  AKRVAFVTGGMGGLGAAISRRLHDAGMAVAV---SHSERNDHVSTWLMHERDAGRDFKAY 80

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----AT 136
            +DV+   S  + A +  +    +++LINNAGI       ++D       +  +     T
Sbjct: 81  AVDVADFESCERCAEKVLADFGKVDVLINNAGI-------TRDATFMKMTKGDWDAVMRT 133

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG 196
           +    F +T   +  M +      R GRIVN+ S               +N        G
Sbjct: 134 DLDAMFNVTKQFIAGMVE-----RRFGRIVNIGS---------------VNGSR-----G 168

Query: 197 AYGQ-----SKLANIL-----HAKELAKHLKEDGVNITANSLHPGSIVT 235
           A+GQ     +K A I       A E AK        IT N++ PG + T
Sbjct: 169 AFGQANYASAK-AGIHGFTKTLALETAKR------GITVNTVSPGYLAT 210

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277

 Score = 91.1 bits (227), Expect = 5e-22
 Identities = 54/227 (23%), Positives = 86/227 (37%), Gaps = 46/227 (20%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVI---------MAVRNMAAGKDVREAIVKEIP 78
            G  A +TGA+ G G   A  +A  G  +I           V    A  D     V+ + 
Sbjct: 10  EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVE 69

Query: 79  SA--KVDAMELDVSSLASVRKFASEYNSQ-GRPLNILINNAGIMA-SPFM-LSKDNIELQ 133
           +A  ++ A  +D      +RK   +  +  GR L+I++ NAG+ A   +  ++ ++    
Sbjct: 70  AANRRIVAAVVDTRDFDRLRKVVDDGVAALGR-LDIIVANAGVAAPQAWDDITPEDFRDV 128

Query: 134 FATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYN 193
              N  G +         + +      R G I+ +SS A       G++           
Sbjct: 129 MDINVTGTWNTVMAGAPRIIEGG----RGGSIILISSAA-------GMK--------MQP 169

Query: 194 SFGAYGQSK-----LANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
               Y  SK     LA    A EL KH      +I  NS+HPG + T
Sbjct: 170 FMIHYTASKHAVTGLARAF-AAELGKH------SIRVNSVHPGPVNT 209

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245

 Score = 89.5 bits (223), Expect = 1e-21
 Identities = 47/227 (20%), Positives = 79/227 (34%), Gaps = 66/227 (29%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
                ++TGA+ GIG  T  + A  G  ++         ++  EA+           + +
Sbjct: 4   KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVM 56

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----ATNH 138
           DV+  ASV +  +E  +    L+ +++ AGI       ++DN         +      N 
Sbjct: 57  DVADPASVERGFAEALAHLGRLDGVVHYAGI-------TRDNFHWKMPLEDWELVLRVNL 109

Query: 139 LGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAY 198
            G FL+     + M++        G IV  +S  +                      G  
Sbjct: 110 TGSFLVAKAASEAMRE-----KNPGSIVLTASRVY---------------------LGNL 143

Query: 199 GQ-----SKLANIL-----HAKELAKHLKEDGVNITANSLHPGSIVT 235
           GQ     S  A ++      A EL +        I  N+L PG I T
Sbjct: 144 GQANYAASM-AGVVGLTRTLALELGRW------GIRVNTLAPGFIET 183

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280

 Score = 89.9 bits (224), Expect = 1e-21
 Identities = 57/227 (25%), Positives = 89/227 (39%), Gaps = 46/227 (20%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVI---------MAVRNMAAGKDVREAIVKEIP 78
            G  A +TGA+ G G   A  LA  G  +I          +V    A  +  +   + + 
Sbjct: 14  QGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVE 73

Query: 79  SA--KVDAMELDVSSLASVRKFASEYNSQ-GRPLNILINNAGIMA-SPFM-LSKDNIELQ 133
               K     LDV   A++R+  ++   Q GR L++++ NAG+++      L+ +  +  
Sbjct: 74  DQGRKALTRVLDVRDDAALRELVADGMEQFGR-LDVVVANAGVLSWGRVWELTDEQWDTV 132

Query: 134 FATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYN 193
              N  G +      +  M +        G IV VSS A       G++        A  
Sbjct: 133 IGVNLTGTWRTLRATVPAMIEAG----NGGSIVVVSSSA-------GLK--------ATP 173

Query: 194 SFGAYGQSK-----LANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
             G Y  SK     L N L A EL ++       I  NS+HP S+ T
Sbjct: 174 GNGHYSASKHGLTALTNTL-AIELGEY------GIRVNSIHPYSVET 213

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279

 Score = 89.9 bits (224), Expect = 1e-21
 Identities = 45/219 (20%), Positives = 78/219 (35%), Gaps = 37/219 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A VTG+S GIG   A   A  G  V +   +  A +                A + 
Sbjct: 33  KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY--GVHSKAYKC 90

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFMLSKDNIEL---QFATNHLGHFL 143
           ++S   SV +  S+       +++ + NAG+       +  DN +      + +  G + 
Sbjct: 91  NISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYY 150

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
            +H +    KK        G ++  SS +       G   +    ++ YN+      +K 
Sbjct: 151 CSHNIGKIFKK--NGK---GSLIITSSIS-------GKIVNIPQLQAPYNT------AK- 191

Query: 204 ANILH-----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
           A   H     A E A            N++ PG I T++
Sbjct: 192 AACTHLAKSLAIEWAPF-------ARVNTISPGYIDTDI 223

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265

 Score = 89.6 bits (223), Expect = 2e-21
 Identities = 54/225 (24%), Positives = 85/225 (37%), Gaps = 45/225 (20%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           GL A++TG +SG+G  TA  L  +G   ++     + G    EA  K++          D
Sbjct: 12  GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG----EAQAKKL-GNNCVFAPAD 66

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFMLSKDNIEL---QF----ATNHLG 140
           V+S   V+   +    +   +++ +N AGI +AS     K         F      N +G
Sbjct: 67  VTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMG 126

Query: 141 HFLLTHLLLDTMKKTAQKSSRE-GRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG--A 197
            F +  L+   M +       + G I+N +S     A  EG               G  A
Sbjct: 127 TFNVIRLVAGEMGQNEPDQGGQRGVIINTAS----VAAFEG-------------QVGQAA 169

Query: 198 YGQSKLANILH-----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
           Y  SK   I+      A++LA         I   ++ PG   T L
Sbjct: 170 YSASK-GGIVGMTLPIARDLAPI------GIRVMTIAPGLFGTPL 207

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270

 Score = 89.5 bits (223), Expect = 2e-21
 Identities = 49/176 (27%), Positives = 69/176 (39%), Gaps = 27/176 (15%)

Query: 6   RKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA 65
                G   + T    +         AIVTGAS GIG   A  LA RG  VI      A 
Sbjct: 5   HHHHMGTLEAQTQGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAG 64

Query: 66  GKDVREAIVKEIPSA--KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPF 123
                E I      A  +     L+V+   +V         +   LN+L+NNAGI     
Sbjct: 65  A----EGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNAGI----- 115

Query: 124 MLSKDNI-----ELQF----ATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
             ++D +     + ++     TN    F L+  +L  M K     +R GRIVN++S
Sbjct: 116 --TQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMK-----ARGGRIVNITS 164

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269

 Score = 88.8 bits (221), Expect = 3e-21
 Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 26/177 (14%)

Query: 5   SRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA 64
           S       S           +  T   A+VTGAS GIG   A  LA  G  V +   N A
Sbjct: 4   SHHHHHHSSGLVPRGSHMTALPLTDRIALVTGASRGIGRAIALELAAAGAKVAV---NYA 60

Query: 65  AGKDVREAIVKEIPSA--KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASP 122
           +     + +V  I +A  +  A++ DVS  + V    +    +   L++L+NNAGI    
Sbjct: 61  SSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGI---- 116

Query: 123 FMLSKDNI-----ELQF----ATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
              ++D +        +      N  G FL +      M K      R GRI+N++S
Sbjct: 117 ---TRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLK-----QRSGRIINIAS 165

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278

 Score = 89.2 bits (222), Expect = 3e-21
 Identities = 57/224 (25%), Positives = 81/224 (36%), Gaps = 41/224 (18%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMA--------VRNMAAGKDVREAIVKEIPS 79
           TG  A +TGA+ G G   A  LA  G  +I          V    A  +   A VK +  
Sbjct: 12  TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVED 71

Query: 80  A--KVDAMELDVSSLASVRKFASEYNSQ-GRPLNILINNAGIMASPFMLSKDNIELQFAT 136
              ++ A + DV    S+         + GR L+I++ NAGI  +P     D        
Sbjct: 72  IGSRIVARQADVRDRESLSAALQAGLDELGR-LDIVVANAGI--APMSAGDDGWHDVIDV 128

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG 196
           N  G +    + + T+ K        G IV +SS A       G+        SA     
Sbjct: 129 NLTGVYHTIKVAIPTLVKQG----TGGSIVLISSSA-------GLA----GVGSADPGSV 173

Query: 197 AYGQSK-----LANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
            Y  +K     L  +  A  LA         I  NS+HP  + T
Sbjct: 174 GYVAAKHGVVGLMRVY-ANLLAGQ------MIRVNSIHPSGVET 210

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285

 Score = 89.2 bits (222), Expect = 3e-21
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 27/154 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
               A+VTGA  GIG E A++LA    HVI   R   +     +++V EI S   +    
Sbjct: 43  ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSC----DSVVDEIKSFGYESSGY 98

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----AT 136
             DVS    + +  ++  ++ + ++IL+NNAGI       ++DN+       ++     T
Sbjct: 99  AGDVSKKEEISEVINKILTEHKNVDILVNNAGI-------TRDNLFLRMKNDEWEDVLRT 151

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
           N    F +T  +   M       +R GRI+N+SS
Sbjct: 152 NLNSLFYITQPISKRMIN-----NRYGRIINISS 180

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247

 Score = 88.3 bits (220), Expect = 3e-21
 Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 26/154 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
            G TAIVTG+S G+G   A  L   G ++++   N +      +A  +E  +A   V   
Sbjct: 4   KGKTAIVTGSSRGLGKAIAWKLGNMGANIVL---NGSPASTSLDATAEEFKAAGINVVVA 60

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----AT 136
           + DV +   V             ++IL+NNAGI       ++D +     E  +     T
Sbjct: 61  KGDVKNPEDVENMVKTAMDAFGRIDILVNNAGI-------TRDTLMLKMSEKDWDDVLNT 113

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
           N    +L T  +   M K      + G+I+N++S
Sbjct: 114 NLKSAYLCTKAVSKIMLK-----QKSGKIINITS 142

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247

 Score = 88.3 bits (220), Expect = 3e-21
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 23/155 (14%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
           +      A+VTGAS GIG E A  LA +G  V+    + A+ +    ++ ++    K   
Sbjct: 1   MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK--GFKARG 58

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ---------FA 135
           + L++S + S++ F +E  ++   ++IL+NNAGI       ++DN+ ++           
Sbjct: 59  LVLNISDIESIQNFFAEIKAENLAIDILVNNAGI-------TRDNLMMRMSEDEWQSVIN 111

Query: 136 TNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
           TN    F ++   +  M K      R GRI+++ S
Sbjct: 112 TNLSSIFRMSKECVRGMMK-----KRWGRIISIGS 141

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286

 Score = 88.8 bits (221), Expect = 4e-21
 Identities = 52/241 (21%), Positives = 80/241 (33%), Gaps = 50/241 (20%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMA------------VRNMAAGKDVREAIVK 75
            G  A VTGA+ G G   A  LA  G  +I                  A+  +       
Sbjct: 10  EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETAD 69

Query: 76  EIPSA--KVDAMELDVSSLASVRKFASEYNSQ-GRPLNILINNAGI--MASPFM-LSKDN 129
            +     ++   E+DV    +++        Q GR L+I++ NAGI          S+++
Sbjct: 70  LVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGR-LDIIVANAGIGNGGDTLDKTSEED 128

Query: 130 IELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE 189
                  N  G +      +  M        R G I+  SS         G++       
Sbjct: 129 WTEMIDINLAGVWKTVKAGVPHMIAGG----RGGSIILTSSVG-------GLK------- 170

Query: 190 SAYNSFGAYGQSK-----LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGIL 244
            AY   G Y  +K     L       EL +H       I  NS+HP  + T +    G  
Sbjct: 171 -AYPHTGHYVAAKHGVVGLMRAF-GVELGQH------MIRVNSVHPTHVKTPMLHNEGTF 222

Query: 245 R 245
           +
Sbjct: 223 K 223

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248

 Score = 87.5 bits (218), Expect = 6e-21
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 26/152 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTGAS GIG   A +LA RG  VI    + +  + + + +           M L
Sbjct: 8   EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL-----GDNGKGMAL 62

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----ATNH 138
           +V++  S+         +   ++IL+NNAGI       ++DN+     E ++     TN 
Sbjct: 63  NVTNPESIEAVLKAITDEFGGVDILVNNAGI-------TRDNLLMRMKEEEWSDIMETNL 115

Query: 139 LGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
              F L+  +L  M K      R+GRI+NV S
Sbjct: 116 TSIFRLSKAVLRGMMK-----KRQGRIINVGS 142

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288

 Score = 87.7 bits (218), Expect = 8e-21
 Identities = 52/250 (20%), Positives = 81/250 (32%), Gaps = 44/250 (17%)

Query: 8   GPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHV-IMAVRNMAAG 66
           G S      ++  V +G       A+VTGA+  IG   A  L   G  V I    +  A 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAA 61

Query: 67  KDVREAIVKEIPSAKVDAMELDVSS----LASVRKFASEYNSQGRPLNILINNAGI---- 118
             + + + KE         + D+++     AS  +  +         ++L+NNA      
Sbjct: 62  VSLADELNKERS-NTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPT 120

Query: 119 ----MASPFMLSKDNIELQF----ATNHLGHFLLTHLLLDTMKKTAQK-SSREGRIVNVS 169
                      +   +E Q      TN +  FLLT       K T    +S    IVN+ 
Sbjct: 121 PLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLC 180

Query: 170 SEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL----HAKELAKHLKEDGVNITA 225
                              +    +F  Y   K A +      A ELA +       I  
Sbjct: 181 D---------------AMVDQPCMAFSLYNMGKHALVGLTQSAALELAPY------GIRV 219

Query: 226 NSLHPGSIVT 235
           N + PG  + 
Sbjct: 220 NGVAPGVSLL 229

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281

 Score = 87.7 bits (218), Expect = 1e-20
 Identities = 57/216 (26%), Positives = 86/216 (39%), Gaps = 41/216 (18%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
             +VTGASSG G   A      G  VI   R   A  D+  A        + +A+ LDV+
Sbjct: 7   VWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY-----PDRAEAISLDVT 61

Query: 91  SLASVRK-FASEYNSQGRPLNILINNAG-IMASPF-MLSKDNIELQFATNHLGHFLLTHL 147
               +    A      GR +++L+NNAG      F   ++  +   F  +  G   LT  
Sbjct: 62  DGERIDVVAADVLARYGR-VDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRA 120

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
           LL  M+   + S   G +VN+SS   + +++                F AY  +K     
Sbjct: 121 LLPQMR--ERGS---GSVVNISSFGGQLSFA---------------GFSAYSATK----- 155

Query: 208 HAKE-----LAKHLKEDGVNITANSLHPGSIVTNLF 238
            A E     LA  +   G+ +    + PG+  TNLF
Sbjct: 156 AALEQLSEGLADEVAPFGIKVLI--VEPGAFRTNLF 189

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246

 Score = 86.8 bits (216), Expect = 1e-20
 Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 26/154 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
              +A+VTGAS GIG   A  LA  G +V +   N A  K+  EA+V+EI +      A+
Sbjct: 3   MTKSALVTGASRGIGRSIALQLAEEGYNVAV---NYAGSKEKAEAVVEEIKAKGVDSFAI 59

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----AT 136
           + +V+    V+    E  SQ   L++L+NNAGI       ++DN+     E ++     T
Sbjct: 60  QANVADADEVKAMIKEVVSQFGSLDVLVNNAGI-------TRDNLLMRMKEQEWDDVIDT 112

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
           N  G F         M +      R G I+N+SS
Sbjct: 113 NLKGVFNCIQKATPQMLR-----QRSGAIINLSS 141

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246

 Score = 86.8 bits (216), Expect = 1e-20
 Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 26/154 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
            G  A+VTGAS GIG   A  LA +G +V++   N A  +     +V EI        A+
Sbjct: 3   KGKVALVTGASRGIGRAIAIDLAKQGANVVV---NYAGNEQKANEVVDEIKKLGSDAIAV 59

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----AT 136
             DV++   V     +       ++IL+NNAG+       +KDN+     E ++     T
Sbjct: 60  RADVANAEDVTNMVKQTVDVFGQVDILVNNAGV-------TKDNLLMRMKEEEWDTVINT 112

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
           N  G FL T  +   M +      R GRIVN++S
Sbjct: 113 NLKGVFLCTKAVSRFMMR-----QRHGRIVNIAS 141

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254

 Score = 86.8 bits (216), Expect = 1e-20
 Identities = 39/210 (18%), Positives = 69/210 (32%), Gaps = 37/210 (17%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           TAIVT      G  +A  L+  G  V           D       E+ +      +L   
Sbjct: 3   TAIVTNVKHFGGMGSALRLSEAGHTVACH--------DESFKQKDELEAFAETYPQLKPM 54

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIM--ASPFM-LSKDNIELQFATNHLGHFLLTHL 147
           S     +      S    +++L++N        P    + ++         +  F L + 
Sbjct: 55  SEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNA 114

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS--FGAYGQSKLAN 205
           +   MKK      + G I+ ++S A  F   +          S Y S   GA   +    
Sbjct: 115 VASQMKK-----RKSGHIIFITS-ATPFGPWKE--------LSTYTSARAGACTLANAL- 159

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVT 235
              +KEL ++      NI   ++ P  + +
Sbjct: 160 ---SKELGEY------NIPVFAIGPNYLHS 180

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264

 Score = 86.8 bits (216), Expect = 1e-20
 Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 59/229 (25%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
               A++T  + G+G +    L  +G  V +      +     E + +       ++  +
Sbjct: 6   FVRHALITAGTKGLGKQVTEKLLAKGYSVTV---TYHSDTTAMETMKETYKDVEERLQFV 62

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----AT 136
           + DV+    + K   E  S    ++ LINNAG       + +        E ++      
Sbjct: 63  QADVTKKEDLHKIVEEAMSHFGKIDFLINNAG-----PYVFERKKLVDYEEDEWNEMIQG 117

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG 196
           N    F L  L++  M+K        GRI+N                     + A ++ G
Sbjct: 118 NLTAVFHLLKLVVPVMRK-----QNFGRIINYGF------------------QGADSAPG 154

Query: 197 AYGQ-----SKLANIL-----HAKELAKHLKEDGVNITANSLHPGSIVT 235
              +     +K   ++      A E A++       ITAN + PG I+ 
Sbjct: 155 WIYRSAFAAAK-VGLVSLTKTVAYEEAEY------GITANMVCPGDIIG 196

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 31/221 (14%), Positives = 72/221 (32%), Gaps = 51/221 (23%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
             +  ++ GAS  +G+     L  +   VI A R+                      + +
Sbjct: 2   NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRH-------------------SGDVTV 41

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLT 145
           D++++ S++K   +    G+ ++ +++  G    SP   L+ +   +  ++   G   L 
Sbjct: 42  DITNIDSIKKMYEQV---GK-VDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLV 97

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
            L +D++         +G     +         + I               +   +  A 
Sbjct: 98  LLGIDSLND-------KGSFTLTTGIMME----DPIVQ-----------GASAAMANGAV 135

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRG 246
              AK  A  +      I  N++ P  +  +  +      G
Sbjct: 136 TAFAKSAAIEMPR---GIRINTVSPNVLEESWDKLEPFFEG 173

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248

 Score = 86.0 bits (214), Expect = 2e-20
 Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 22/152 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  ++VTG++ GIG   A  LA  G  VI+   +    K V E I  +    K   +E+
Sbjct: 6   QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY-GVKAHGVEM 64

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----ATNH 138
           ++ S  S+ K   E  +    ++IL+NNAGI       ++D +      L +      N 
Sbjct: 65  NLLSEESINKAFEEIYNLVDGIDILVNNAGI-------TRDKLFLRMSLLDWEEVLKVNL 117

Query: 139 LGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
            G FL+T   L  M K      R GRIVN+SS
Sbjct: 118 TGTFLVTQNSLRKMIK-----QRWGRIVNISS 144

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267

 Score = 86.4 bits (215), Expect = 2e-20
 Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 39/221 (17%)

Query: 28  TGLTAIVTGAS--SGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDA 84
            G   +VTGAS   G+G E AR  A  G  V +         ++  + + K     K  A
Sbjct: 19  KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYG-IKAKA 77

Query: 85  MELDVSSLASVRKFASEYNSQ-GRPLNILINNAGI-MASPFM-LSKDNIELQFATNHLGH 141
            +  V S  S  K   +  +  G+ ++  I NAG    S  +  S +        +  G 
Sbjct: 78  YKCQVDSYESCEKLVKDVVADFGQ-IDAFIANAGATADSGILDGSVEAWNHVVQVDLNGT 136

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQS 201
           F     +    K+  + +   G +V  +S +       G   +   ++++YN       +
Sbjct: 137 FHCAKAVGHHFKE--RGT---GSLVITASMS-------GHIANFPQEQTSYNV------A 178

Query: 202 KLANILH-----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
           K A  +H     A E              NS+ PG I T L
Sbjct: 179 K-AGCIHMARSLANEWRDF-------ARVNSISPGYIDTGL 211

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244

 Score = 85.6 bits (213), Expect = 3e-20
 Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 26/151 (17%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELD 88
             +VTGAS GIG   A  L   G  V++   N A      E + K+I +   +      D
Sbjct: 3   VVVVTGASRGIGKAIALSLGKAGCKVLV---NYARSAKAAEEVSKQIEAYGGQAITFGGD 59

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----ATNHL 139
           VS  A V             +++++NNAGI       ++D +     + Q+      N  
Sbjct: 60  VSKEADVEAMMKTAIDAWGTIDVVVNNAGI-------TRDTLLIRMKKSQWDEVIDLNLT 112

Query: 140 GHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
           G FL T      M K      R+GRI+N++S
Sbjct: 113 GVFLCTQAATKIMMK-----KRKGRIINIAS 138

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249

 Score = 85.2 bits (212), Expect = 4e-20
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 30/155 (19%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
           ID TG T+++TGASSGIG+  AR+L   G  VI++  N    K +  A+           
Sbjct: 10  IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTI 64

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ---------FA 135
              ++++        S+ ++    L+IL+ NAGI       + D + ++           
Sbjct: 65  EVCNLANKEECSNLISKTSN----LDILVCNAGI-------TSDTLAIRMKDQDFDKVID 113

Query: 136 TNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
            N   +F+L    +  M +      R GRI+N+SS
Sbjct: 114 INLKANFILNREAIKKMIQ-----KRYGRIINISS 143

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317

 Score = 86.2 bits (214), Expect = 6e-20
 Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 45/226 (19%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVI--------MAVRNMAAGKDVREAIVKEIPS 79
            G  A +TGA+ G G   A  LA  G  ++          +       +  +  V+ +  
Sbjct: 45  QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEE 104

Query: 80  A--KVDAMELDVSSLASVRKFASEYNSQ-GRPLNILINNAGI--MASPFMLSKDNIELQF 134
              ++ A + DV  LAS++    E  ++ G  ++IL++N GI        L+        
Sbjct: 105 QGRRIIARQADVRDLASLQAVVDEALAEFGH-IDILVSNVGISNQGEVVSLTDQQWSDIL 163

Query: 135 ATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS 194
            TN +G +     +L +M +      + G ++ VSS         G+R            
Sbjct: 164 QTNLIGAWHACRAVLPSMIERG----QGGSVIFVSSTV-------GLR--------GAPG 204

Query: 195 FGAYGQSK-----LANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
              Y  SK     L   L A E+ +H      NI  NS++PG++ T
Sbjct: 205 QSHYAASKHGVQGLMLSL-ANEVGRH------NIRVNSVNPGAVNT 243

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266

 Score = 85.3 bits (212), Expect = 6e-20
 Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 26/155 (16%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
              TG  A+VTGA+ GIG   AR    +G  V +        K++   +        V  
Sbjct: 23  FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFV 77

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ---------FA 135
              ++S   S+++ A     +   ++IL+NNAGI       ++D + ++          A
Sbjct: 78  FSANLSDRKSIKQLAEVAEREMEGIDILVNNAGI-------TRDGLFVRMQDQDWDDVLA 130

Query: 136 TNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
            N      LT  L+ +M +      R GRI+N++S
Sbjct: 131 VNLTAASTLTRELIHSMMR-----RRYGRIINITS 160

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245

 Score = 84.5 bits (210), Expect = 8e-20
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 27/152 (17%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM---EL 87
            A++TGAS GIG   A  LA  G  + +   +    ++  E + +E        +     
Sbjct: 3   KALITGASRGIGRAIALRLAEDGFALAI---HYGQNREKAEEVAEEARRRGSPLVAVLGA 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----ATNH 138
           ++    +      +       L+ L+NNAGI       ++D +     +  +      N 
Sbjct: 60  NLLEAEAATALVHQAAEVLGGLDTLVNNAGI-------TRDTLLVRMKDEDWEAVLEANL 112

Query: 139 LGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
              F  T   +  M K     +R GRIVN++S
Sbjct: 113 SAVFRTTREAVKLMMK-----ARFGRIVNITS 139

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294

 Score = 85.3 bits (212), Expect = 9e-20
 Identities = 48/216 (22%), Positives = 74/216 (34%), Gaps = 33/216 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMA--VRNMAAGKDVREAIVKEIPSAKVDAM 85
               A+VTG  SGIG   A   A  G  V +          + V+  I +     K   +
Sbjct: 48  KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC--GRKAVLL 105

Query: 86  ELDVSSLASVRKFASEYNSQ-GRPLNILINNAGI--MASPFM-LSKDNIELQFATNHLGH 141
             D+S  +  R    +     G  L+IL   AG          L+ +  +  FA N    
Sbjct: 106 PGDLSDESFARSLVHKAREALGG-LDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFAL 164

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQS 201
           F +T   +  +        +   I+  SS          +                Y  +
Sbjct: 165 FWITQEAIPLLP-------KGASIITTSSIQAYQPSPHLL---------------DYAAT 202

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           K A + +++ LAK + E G  I  N + PG I T L
Sbjct: 203 KAAILNYSRGLAKQVAEKG--IRVNIVAPGPIWTAL 236

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319

 Score = 85.5 bits (212), Expect = 1e-19
 Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 46/225 (20%)

Query: 22  TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVI-----MAVRNMAAGKDVREAIVKE 76
              +   G   +VTGA  G+G   A   A RG  V+        + +  G    + +V+E
Sbjct: 2   ASPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEE 61

Query: 77  IPSAKVDAMELDVSSLASVRK-FASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQ 133
           I      A+  +  S+ +  K   +  ++ GR +++++NNAGI+   S   +S ++ ++ 
Sbjct: 62  IRRRGGKAV-ANYDSVEAGEKLVKTALDTFGR-IDVVVNNAGILRDRSFSRISDEDWDII 119

Query: 134 FATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYN 193
              +  G F +T    D MKK  Q     GRI+  +S +       GI          Y 
Sbjct: 120 QRVHLRGSFQVTRAAWDHMKK--QNY---GRIIMTASAS-------GI----------YG 157

Query: 194 SFG--AYGQSK-----LANILHAKELAKHLKEDGVNITANSLHPG 231
           +FG   Y  +K     LAN L   E  K+      NI  N++ P 
Sbjct: 158 NFGQANYSAAKLGLLGLANTL-VIEGRKN------NIHCNTIAPN 195

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604

 Score = 86.7 bits (215), Expect = 1e-19
 Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 48/223 (21%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVI-----MAVRNMAAGKDVREAIVKEIPS 79
           +D      I+TGA  G+G   +   A  G  V+      A+          + +V EI  
Sbjct: 4   VDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVK 63

Query: 80  AKVDAM--ELDVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFA 135
               A+    +V     + + A +  + G  ++++INNAGI+  AS   +++ + +L   
Sbjct: 64  NGGVAVADYNNVLDGDKIVETAVK--NFGT-VHVIINNAGILRDASMKKMTEKDYKLVID 120

Query: 136 TNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF 195
            +  G F +T       +K  QK    GRIVN SS A       G+          Y +F
Sbjct: 121 VHLNGAFAVTKAAWPYFQK--QKY---GRIVNTSSPA-------GL----------YGNF 158

Query: 196 G--AYGQSK-----LANILHAKELAKHLKEDGVNITANSLHPG 231
           G   Y  +K      A  L AKE AK+      NI AN++ P 
Sbjct: 159 GQANYASAKSALLGFAETL-AKEGAKY------NIKANAIAPL 194

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 54/218 (24%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
                ++TGA +G+G E A+  A  G  V+  V +           V EI +A  +A   
Sbjct: 321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVV--VNDFKDATKT----VDEIKAAGGEA--- 371

Query: 88  DVSSLASVRKFASEYNSQ-----GRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLG 140
                  V K +           G  ++IL+NNAGI+   S   +SK   +     + +G
Sbjct: 372 -WPDQHDVAKDSEAIIKNVIDKYGT-IDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIG 429

Query: 141 HFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG--AY 198
            F L+ L      +  ++    GRI+N++S +       GI          Y +FG   Y
Sbjct: 430 TFNLSRLAWPYFVE--KQF---GRIINITSTS-------GI----------YGNFGQANY 467

Query: 199 GQSK-----LANILHAKELAKHLKEDGVNITANSLHPG 231
             SK     L+  + A E AK+      NI  N + P 
Sbjct: 468 SSSKAGILGLSKTM-AIEGAKN------NIKVNIVAPH 498

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281

 Score = 84.5 bits (210), Expect = 1e-19
 Identities = 55/226 (24%), Positives = 81/226 (35%), Gaps = 46/226 (20%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVI--------MAVRNMAAGKDVREAIVKEIPS 79
            G TA++TG + G+G   A  LA  G  +           V    A  D     V  +  
Sbjct: 9   EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEK 68

Query: 80  A--KVDAMELDVSSLASVRKFASEYNSQ-GRPLNILINNAGIMA-SPFM-LSKDNIELQF 134
              +  + ++DV   A++  F +E     G  ++I I NAGI   +    +     +   
Sbjct: 69  TGRRCISAKVDVKDRAALESFVAEAEDTLGG-IDIAITNAGISTIALLPEVESAQWDEVI 127

Query: 135 ATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS 194
            TN  G F     +   M K        GRIV VSS         G          A  +
Sbjct: 128 GTNLTGTFNTIAAVAPGMIK-----RNYGRIVTVSSML-------GHS--------ANFA 167

Query: 195 FGAYGQSK-----LANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
             +Y  SK     L     A +L  +       IT N++ PG+I T
Sbjct: 168 QASYVSSKWGVIGLTKCA-AHDLVGY------GITVNAVAPGNIET 206

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257

 Score = 83.4 bits (207), Expect = 3e-19
 Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 49/225 (21%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVR-EAIVKEIPSAKVDAMEL 87
              A+VTG +SG+G  T + L   G  V++         D+R E +V ++   +      
Sbjct: 9   DAVAVVTGGASGLGLATTKRLLDAGAQVVVL--------DIRGEDVVADL-GDRARFAAA 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI--ELQFA----TNHLGH 141
           DV+  A+V        + G  L I++N AG   +  +LS+D +     F      N +G 
Sbjct: 60  DVTDEAAVASALDLAETMG-TLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGS 118

Query: 142 FLLTHLLLDTMKKTAQKSSRE---GRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG-- 196
           F +  L  + + KT          G I+N +S A   A+ +G               G  
Sbjct: 119 FNVLRLAAERIAKTEPVGPNAEERGVIINTASVA---AF-DG-------------QIGQA 161

Query: 197 AYGQSKLA----NILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           AY  SK       +  A++LA H       I   ++ PG   T L
Sbjct: 162 AYSASKGGVVGMTLPIARDLASH------RIRVMTIAPGLFDTPL 200

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255

 Score = 83.0 bits (206), Expect = 3e-19
 Identities = 38/214 (17%), Positives = 61/214 (28%), Gaps = 29/214 (13%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGK-DVREAIVKEIPSAKVDAMELDV 89
              +TG++SGIG     +LA  G  VI   R  A  + D+     +E   A V      V
Sbjct: 3   VIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGV 62

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIM----ASPFMLSKDNIELQFATNHLGHFLLT 145
                         +    L + +N  G+          LS+           +      
Sbjct: 63  LDGLVCCAGVGVTAANSG-LVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPG 121

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L  ++         G        A +                   +  AY  SK A 
Sbjct: 122 AAELPMVEA-----MLAGDEARAIELAEQQG----------------QTHLAYAGSKYAV 160

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
              A+         G  +  N + PG++ T L +
Sbjct: 161 TCLARRNVVDWAGRG--VRLNVVAPGAVETPLLQ 192

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291

 Score = 82.8 bits (205), Expect = 6e-19
 Identities = 39/250 (15%), Positives = 73/250 (29%), Gaps = 67/250 (26%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA---KVDA 84
           T   A+VTGA+  +G   A  L   G  V +   +         A+   + +        
Sbjct: 8   TVPVALVTGAAKRLGRSIAEGLHAEGYAVCL---HYHRSAAEANALSATLNARRPNSAIT 64

Query: 85  MELDVSSLASVRKFASEYNSQGR-----------------PLNILINNAGIMA-SPFMLS 126
           ++ D+S++A+     ++ ++                      ++L+NNA     +P + +
Sbjct: 65  VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 124

Query: 127 KD---------------NIELQFATNHLGHFLLTHLLLDTMKKTAQKS-SREGRIVNVSS 170
            +                    F +N +  + L       +  T  K       I+N+  
Sbjct: 125 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 184

Query: 171 EAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI-----LHAKELAKHLKEDGVNITA 225
                                   +  Y  +K A         A ELA         I  
Sbjct: 185 ---------------AMTNQPLLGYTIYTMAKGALEGLTRSA-ALELAPL------QIRV 222

Query: 226 NSLHPGSIVT 235
           N + PG  V 
Sbjct: 223 NGVGPGLSVL 232

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322

 Score = 82.8 bits (205), Expect = 9e-19
 Identities = 52/223 (23%), Positives = 85/223 (38%), Gaps = 44/223 (19%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVI---MAVRNMAAGKDVREA---IVKEIPSAK 81
            G   IVTGA  GIG   A   A  G  V+   + V    +      A   +V EI +A 
Sbjct: 26  DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG 85

Query: 82  VDAM--ELDVSSLASVRK-FASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFAT 136
            +A+    +V+          +   + G  L++L+NNAGI+        S++  +   A 
Sbjct: 86  GEAVADGSNVADWDQAAGLIQTAVETFGG-LDVLVNNAGIVRDRMIANTSEEEFDAVIAV 144

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSS-REGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF 195
           +  GHF          +  ++     +GRI+N SS A       G+            S 
Sbjct: 145 HLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGA-------GL----------QGSV 187

Query: 196 G--AYGQSK-----LANILHAKELAKHLKEDGVNITANSLHPG 231
           G   Y  +K     L  +  A E+ ++       +T N++ P 
Sbjct: 188 GQGNYSAAKAGIATLTLVG-AAEMGRY------GVTVNAIAPS 223

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247

 Score = 80.3 bits (199), Expect = 3e-18
 Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 61/222 (27%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
              + +VTG + GIG   A+ LA  G  V +  R   A                +  +E+
Sbjct: 14  VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP-------------KGLFGVEV 60

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----ATNH 138
           DV+   +V +  +       P+ +L++NAG+       S D       E +F      N 
Sbjct: 61  DVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL-------SADAFLMRMTEEKFEKVINANL 113

Query: 139 LGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAY 198
            G F +      +M++     ++ GR++ + S +       G+              G  
Sbjct: 114 TGAFRVAQRASRSMQR-----NKFGRMIFIGSVS-------GLW-------------GIG 148

Query: 199 GQ-----SKLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
            Q     SK   I  A+ +A+ L     N+TAN + PG I T
Sbjct: 149 NQANYAASKAGVIGMARSIAREL--SKANVTANVVAPGYIDT 188

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239

 Score = 79.8 bits (198), Expect = 3e-18
 Identities = 45/214 (21%), Positives = 69/214 (32%), Gaps = 43/214 (20%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+VTG S GIG   A  L  RG  V +A RN         A+           +  D+ 
Sbjct: 4   KALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAV----------PLPTDLE 53

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMA-SPFM-LSKDNIELQFATNHLGHFLLTHLL 148
                +            L++L++ A +    P + LS +        +    FLL    
Sbjct: 54  K-DDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAA 112

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
              M +     +  GR++ + S                    AY +      +K   +L 
Sbjct: 113 APHMAE-----AGWGRVLFIGSVT-------TFTAGGPVPIPAYTT------AK-TALLG 153

Query: 209 -----AKELAKHLKEDGVNITANSLHPGSIVTNL 237
                AKE A+        I  N L PG + T  
Sbjct: 154 LTRALAKEWARL------GIRVNLLCPGYVETEF 181

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328

 Score = 81.3 bits (201), Expect = 3e-18
 Identities = 39/250 (15%), Positives = 73/250 (29%), Gaps = 67/250 (26%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA---KVDA 84
           T   A+VTGA+  +G   A  L   G  V +   +         A+   + +        
Sbjct: 45  TVPVALVTGAAKRLGRSIAEGLHAEGYAVCL---HYHRSAAEANALSATLNARRPNSAIT 101

Query: 85  MELDVSSLASVRKFASEYNSQGR-----------------PLNILINNAGIMA-SPFMLS 126
           ++ D+S++A+     ++ ++                      ++L+NNA     +P + +
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 161

Query: 127 KD---------------NIELQFATNHLGHFLLTHLLLDTMKKTAQKS-SREGRIVNVSS 170
            +                    F +N +  + L       +  T  K       I+N+  
Sbjct: 162 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 221

Query: 171 EAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI-----LHAKELAKHLKEDGVNITA 225
                                   +  Y  +K A         A ELA         I  
Sbjct: 222 ---------------AMTNQPLLGYTIYTMAKGALEGLTRSA-ALELAPL------QIRV 259

Query: 226 NSLHPGSIVT 235
           N + PG  V 
Sbjct: 260 NGVGPGLSVL 269

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253

 Score = 79.9 bits (198), Expect = 4e-18
 Identities = 53/222 (23%), Positives = 82/222 (36%), Gaps = 61/222 (27%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
              + +VTG + GIG   AR  A  G  V +  R+                     A++ 
Sbjct: 20  MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP-------------EGFLAVKC 66

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNI-----ELQF----ATNH 138
           D++    V +   E      P+ +LI NAG+       +KD +     E  F     TN 
Sbjct: 67  DITDTEQVEQAYKEIEETHGPVEVLIANAGV-------TKDQLLMRMSEEDFTSVVETNL 119

Query: 139 LGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAY 198
            G F +       M +     +++GR+V +SS         G+              G+ 
Sbjct: 120 TGTFRVVKRANRAMLR-----AKKGRVVLISSVV-------GLL-------------GSA 154

Query: 199 GQ-----SKLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           GQ     SK   +  A+ LA+ L     NIT N + PG + T
Sbjct: 155 GQANYAASKAGLVGFARSLAREL--GSRNITFNVVAPGFVDT 194

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242

 Score = 79.6 bits (197), Expect = 5e-18
 Identities = 51/216 (23%), Positives = 82/216 (37%), Gaps = 43/216 (19%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           +A+VTG +SG+G   A  L  RG  V++                       +  +E DV+
Sbjct: 4   SALVTGGASGLGRAAALALKARGYRVVVLDLRREGE--------------DLIYVEGDVT 49

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSK------DNIELQFATNHLGHFLL 144
               VR+  +    +  PL  +++ AG+  +  +L K      ++       N LG F +
Sbjct: 50  REEDVRRAVARAQEEA-PLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNV 108

Query: 145 THLLLDTMKKTAQKSSRE-GRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG--AYGQS 201
             L    M++    +  + G IVN +S A   A+ EG               G  AY  S
Sbjct: 109 LRLAAWAMRENPPDAEGQRGVIVNTASVA---AF-EG-------------QIGQAAYAAS 151

Query: 202 KLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           K   +      A+ L   G  I   ++ PG   T L
Sbjct: 152 KGGVVALTLPAARELAGWG--IRVVTVAPGLFDTPL 185

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} Length = 613

 Score = 79.1 bits (195), Expect = 6e-17
 Identities = 64/223 (28%), Positives = 95/223 (42%), Gaps = 48/223 (21%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIM-----AVRNMAAGKDVREAIVKEIPS 79
           +   G  A+VTGA +G+G E A + A RG  V++           A +   + +V EI  
Sbjct: 15  LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRK 74

Query: 80  AKVDAM--ELDVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFA 135
           A  +A+     V   A V + A +  + GR ++IL+NNAGI+   S    S+ +  L   
Sbjct: 75  AGGEAVADYNSVIDGAKVIETAIK--AFGR-VDILVNNAGILRDRSLVKTSEQDWNLVND 131

Query: 136 TNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF 195
            +  G F  T      MKK  Q     GRI+  SS +       GI          Y +F
Sbjct: 132 VHLKGSFKCTQAAFPYMKK--QNY---GRIIMTSSNS-------GI----------YGNF 169

Query: 196 G--AYGQSK-----LANILHAKELAKHLKEDGVNITANSLHPG 231
           G   Y  +K     LAN + A E A++      N+  N + P 
Sbjct: 170 GQVNYTAAKMGLIGLANTV-AIEGARN------NVLCNVIVPT 205

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291

 Score = 77.2 bits (191), Expect = 6e-17
 Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 38/218 (17%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAME 86
            G   ++TG  SGIG   +   A  G ++ +A +       + ++ + KE    K   + 
Sbjct: 46  KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE--GVKCVLLP 103

Query: 87  LDVSSLASVRKFASEYNSQ-GRPLNILINNAGI--MASPFM-LSKDNIELQFATNHLGHF 142
            D+S     +    E   Q G  LNIL+NN            ++ + +E  F  N   +F
Sbjct: 104 GDLSDEQHCKDIVQETVRQLGS-LNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYF 162

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG---AYG 199
            +T   L  +K       +   I+N +S               I    AY        Y 
Sbjct: 163 HVTKAALSHLK-------QGDVIINTAS---------------IV---AYEGNETLIDYS 197

Query: 200 QSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
            +K A +   + L++ L + G  I  N + PG I T L
Sbjct: 198 ATKGAIVAFTRSLSQSLVQKG--IRVNGVAPGPIWTPL 233

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 16/127 (12%)

Query: 9   PSGFSASSTA----EEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA 64
            +G + ++ A         G    G  A+V   +  +G  +A +LA  G  V++  R + 
Sbjct: 95  SNGSNTTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD 154

Query: 65  AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM 124
             +   +++ K        A   + +  AS  +            + +           +
Sbjct: 155 KAQAAADSVNKRFKVNVTAA---ETADDASRAEAVKG-------AHFVFTAGA--IGLEL 202

Query: 125 LSKDNIE 131
           L +   +
Sbjct: 203 LPQAAWQ 209

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 29/218 (13%), Positives = 65/218 (29%), Gaps = 51/218 (23%)

Query: 26  DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM 85
            G  +   V GA+  +G   AR +   G  +++  R  +         ++ +   + +  
Sbjct: 10  PGAHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQ--------IQRLAYLEPECR 61

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGI-----MASPFMLSKDNIELQFATNHLG 140
             ++   A + +                   G+      A  +       + + A+    
Sbjct: 62  VAEMLDHAGLERAL----------------RGLDGVIFSAGYYPSRPRRWQEEVASALGQ 105

Query: 141 HFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF----G 196
               T+       +         RI+ V S     A     +    ++   Y+S      
Sbjct: 106 ----TNPFYAACLQARVP-----RILYVGSAY---AMPRHPQGLPGHEGLFYDSLPSGKS 153

Query: 197 AYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV 234
           +Y   K A      E A+    +G+ +      PG ++
Sbjct: 154 SYVLCKWA----LDEQAREQARNGLPVVI--GIPGMVL 185

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 18/171 (10%)

Query: 34  VTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLA 93
           + GA+  +G +  + L   G      V       DV +       S  VDA   D+S+  
Sbjct: 19  IIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLI-DVFQPEAPAGFSGAVDARAADLSAPG 77

Query: 94  SVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMK 153
              K            +++ + A I++     ++ + +  +  N  G    T  L D ++
Sbjct: 78  EAEKLVEA------RPDVIFHLAAIVSGE---AELDFDKGYRINLDG----TRYLFDAIR 124

Query: 154 KTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
               K   + R+V  SS A    +   +    I DE       +YG  K  
Sbjct: 125 IANGKDGYKPRVVFTSSIA---VFGAPLP-YPIPDEFHTTPLTSYGTQKAI 171

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 30/173 (17%), Positives = 68/173 (39%), Gaps = 31/173 (17%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL 92
           +VTG+S  IGTE    LA +     +   ++                  +  + LDVS+ 
Sbjct: 3   LVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT-----------GGIKFITLDVSNR 51

Query: 93  ASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTM 152
             + +   +Y+     ++ + + AGI+++     + +  L +  N  G    T+ +L+  
Sbjct: 52  DEIDRAVEKYS-----IDAIFHLAGILSAK---GEKDPALAYKVNMNG----TYNILEAA 99

Query: 153 KKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
           K+   +     ++V  S+      +      +K+   +       +G +K+A 
Sbjct: 100 KQHRVE-----KVVIPSTIG---VFGPETPKNKVPSITITRPRTMFGVTKIAA 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	100.0
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	100.0
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	100.0
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	100.0
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	100.0
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	100.0
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	100.0
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	100.0
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	100.0
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	100.0
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	100.0
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	100.0
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	100.0
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	100.0
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	100.0
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	100.0
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	100.0
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	100.0
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	100.0
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	100.0
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	100.0
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	100.0
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	100.0
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	100.0
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	100.0
3rih_A	293	Short chain dehydrogenase or reductase; structural	100.0
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	100.0
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	100.0
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	100.0
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	100.0
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	100.0
4dqx_A	277	Probable oxidoreductase protein; structural genomi	100.0
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	100.0
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	100.0
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	100.0
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	100.0
3imf_A	257	Short chain dehydrogenase; structural genomics, in	100.0
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	100.0
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	100.0
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	100.0
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	100.0
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	100.0
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	100.0
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	100.0
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	100.0
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	100.0
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	100.0
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	100.0
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	100.0
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	100.0
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	100.0
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	100.0
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	100.0
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	100.0
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	100.0
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	100.0
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	100.0
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	100.0
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	100.0
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	100.0
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	100.0
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	100.0
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	100.0
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	100.0
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	100.0
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	100.0
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	100.0
1xhl_A	297	Short-chain dehydrogenase/reductase family member	100.0
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	100.0
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	100.0
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	100.0
3cxt_A	291	Dehydrogenase with different specificities; rossma	100.0
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	100.0
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	100.0
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	100.0
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	100.0
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	100.0
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	100.0
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	100.0
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	100.0
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	100.0
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	100.0
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	100.0
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	100.0
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	100.0
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	100.0
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	100.0
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	100.0
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	100.0
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	100.0
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	100.0
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	100.0
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	100.0
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	100.0
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	100.0
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	100.0
1xkq_A	280	Short-chain reductase family member (5D234); parra	100.0
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	100.0
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	100.0
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	100.0
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	100.0
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	100.0
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	100.0
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	100.0
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	100.0
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	100.0
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	100.0
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	100.0
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	100.0
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	100.0
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	100.0
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	100.0
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	100.0
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	100.0
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	100.0
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	100.0
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	100.0
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
1spx_A	278	Short-chain reductase family member (5L265); paral	100.0
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	100.0
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	100.0
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	100.0
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	100.0
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	100.0
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	100.0
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	100.0
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	100.0
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	100.0
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	100.0
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	100.0
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	100.0
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	100.0
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	100.0
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	100.0
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	100.0
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	100.0
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	100.0
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	100.0
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	100.0
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	100.0
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	100.0
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	100.0
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	100.0
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	100.0
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	100.0
1xq1_A	266	Putative tropinone reducatse; structural genomics,	100.0
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	100.0
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	100.0
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	100.0
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	100.0
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	100.0
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	100.0
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	100.0
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	100.0
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	100.0
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	100.0
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	100.0
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	100.0
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	100.0
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	100.0
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	100.0
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	100.0
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	100.0
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	100.0
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	100.0
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	100.0
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	100.0
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	100.0
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	100.0
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	100.0
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	100.0
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	100.0
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	100.0
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	100.0
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	100.0
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	100.0
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	100.0
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	100.0
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	100.0
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	100.0
4e4y_A	244	Short chain dehydrogenase family protein; structur	100.0
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	100.0
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	100.0
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	100.0
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	100.0
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	100.0
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	100.0
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	100.0
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	100.0
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	100.0
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	100.0
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	100.0
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	100.0
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	100.0
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	100.0
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	100.0
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	100.0
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	100.0
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	100.0
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	100.0
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	100.0
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	100.0
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	100.0
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	100.0
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	100.0
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	100.0
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	100.0
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.97
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.97
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.97
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.96
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.96
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.96
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.96
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.95
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.95
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.95
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.94
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.94
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.93
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.93
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.91
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.91
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.91
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.91
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.91
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.91
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.9
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.89
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.89
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.89
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.89
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.89
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.89
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.89
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.89
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.88
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.88
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.88
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.88
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.88
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	99.88
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.88
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.88
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.88
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.87
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.87
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.87
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.87
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.87
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.87
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.86
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.86
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.86
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.86
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.86
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.86
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.86
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.86
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.86
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	99.85
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.85
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.85
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.85
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.85
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.85
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.84
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.84
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.84
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.84
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.84
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.84
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.83
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.83
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.82
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.82
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.82
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.82
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.82
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.81
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.81
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.8
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.8
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.8
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.79
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.79
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.78
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.78
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.78
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.77
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.76
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.76
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.76
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.74
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.73
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.72
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.7
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.68
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.68
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.68
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.64
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.63
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.62
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.61
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.61
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.56
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.55
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.55
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.55
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.55
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.41
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	99.31
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.31
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	99.09
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.95
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.87
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	98.87
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.84
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.65
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.65
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.65
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.64
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.58
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.55
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.55
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.52
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.49
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	98.45
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	98.42
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	98.42
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	98.41
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	98.4
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	98.38
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.37
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.37
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.35
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	98.33
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	98.33
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	98.31
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	98.3
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.3
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.29
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	98.28
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	98.24
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	98.2
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	98.16
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	98.14
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.1
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.09
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	98.09
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	98.08
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	98.07
3gms_A	340	Putative NADPH:quinone reductase; structural genom	98.07
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	98.05
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	98.04
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.03
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.0
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.95
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.95
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.94
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.91
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.91
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.89
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.88
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.87
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.82
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.79
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.79
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	97.77
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.76
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.73
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.73
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	97.72
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.7
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.68
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.66
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.65
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	97.62
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.6
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.58
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	97.54
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.54
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.53
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.52
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.49
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.49
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.48
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.46
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.42
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	97.42
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.41
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.39
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.35
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.34
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.34
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	97.28
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.25
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.25
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	97.24
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	97.24
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.21
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.2
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	97.14
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.13
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.13
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	97.11
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.09
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.09
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.09
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.07
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.07
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.06
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	97.06
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	97.01
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.99
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.98
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.98
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.97
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	96.97
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.97
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.96
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.96
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	96.96
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.94
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.94
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.91
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.91
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.89
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	96.89
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	96.85
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.84
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.83
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.82
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.8
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.76
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.76
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.72
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.7
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.68
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.64
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.63
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	96.63
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.61
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.6
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.6
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.6
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.59
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.58
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.58
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.58
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.52
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.5
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	96.5
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	96.48
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.48
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.46
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.46
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.44
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.43
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	96.43
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.4
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.39
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.38
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.38
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.37
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.36
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.34
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	96.34
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.34
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.33
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.32
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.31
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.27
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.27
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.26
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.25
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	96.24
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.22
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.16
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	96.16
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.15
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.14
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.12
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.12
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.09
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.09
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.09
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.08
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.06
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.01
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	95.97
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.95
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.95
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.91

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=100.00  E-value=2.1e-47  Score=319.66  Aligned_cols=195  Identities=26%  Similarity=0.253  Sum_probs=180.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++|+||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++.+.  +.++.++++|++|+++++++++++.+
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~~   80 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM--GKEVLGVKADVSKKKDVEEFVRRTFE   80 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999876  67899999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +||++|+||||||+..   ++.+++.++|++++++|+.|+|+++|+++|+|.+     ++.|+||++||..+..      
T Consensus        81 ~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~-----~~~G~IVnisS~~g~~------  149 (254)
T 4fn4_A           81 TYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLK-----QGKGVIVNTASIAGIR------  149 (254)
T ss_dssp             HHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTC------
T ss_pred             HcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCcEEEEEechhhcC------
Confidence            9999999999999753   4678999999999999999999999999999987     4579999999999877      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                               +.++..+|++||+|+.+|+|++|.|++++|  ||||+|+||+|+|++......
T Consensus       150 ---------~~~~~~~Y~asKaal~~ltr~lA~ela~~g--IrVN~V~PG~i~T~~~~~~~~  200 (254)
T 4fn4_A          150 ---------GGFAGAPYTVAKHGLIGLTRSIAAHYGDQG--IRAVAVLPGTVKTNIGLGSSK  200 (254)
T ss_dssp             ---------SSSSCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSSCTTSCSS
T ss_pred             ---------CCCCChHHHHHHHHHHHHHHHHHHHhhhhC--eEEEEEEeCCCCCcccccccC
Confidence                     555778999999999999999999999999  999999999999998765443

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=100.00  E-value=5.5e-47  Score=317.32  Aligned_cols=198  Identities=25%  Similarity=0.317  Sum_probs=182.1

Q ss_pred             cccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           21 VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        21 ~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      |..+++++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.+.  +.++.++++|++|+++++++++
T Consensus         1 Ms~~f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~--g~~~~~~~~Dv~~~~~v~~~~~   78 (255)
T 4g81_D            1 MTALFDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK--GYDAHGVAFDVTDELAIEAAFS   78 (255)
T ss_dssp             --CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHHHHHHHH
T ss_pred             CCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHH
Confidence            34567999999999999999999999999999999999999999999999999887  6689999999999999999999


Q ss_pred             HHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          101 EYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      ++.++||++|+||||||+..  ++.+++.++|++++++|+.|+|+++|+++|+|.++    .++|+||++||..+..   
T Consensus        79 ~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~----~~~G~IVnisS~~~~~---  151 (255)
T 4g81_D           79 KLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIAR----NSGGKIINIGSLTSQA---  151 (255)
T ss_dssp             HHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TCCEEEEEECCGGGTS---
T ss_pred             HHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc----cCCCEEEEEeehhhcC---
Confidence            99999999999999999774  56789999999999999999999999999999752    4579999999999876   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                  +.+....|++||+|+.+|+|++|.|++++|  ||||+|+||+|+|++.+..
T Consensus       152 ------------~~~~~~~Y~asKaal~~ltr~lA~ela~~g--IrVN~V~PG~i~T~~~~~~  200 (255)
T 4g81_D          152 ------------ARPTVAPYTAAKGGIKMLTCSMAAEWAQFN--IQTNAIGPGYILTDMNTAL  200 (255)
T ss_dssp             ------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCGGGHHH
T ss_pred             ------------CCCCchhHHHHHHHHHHHHHHHHHHhcccC--eEEEEEeeCCCCCchhhcc
Confidence                        556778999999999999999999999999  9999999999999998754

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=100.00  E-value=1.3e-44  Score=303.80  Aligned_cols=192  Identities=23%  Similarity=0.328  Sum_probs=173.0

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .++++||++|||||++|||+++|++|+++|++|++++|+.+..+ ..+++.+.  +.++.++++|++|+++++++++++.
T Consensus         2 ~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~-~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~v~~~~   78 (258)
T 4gkb_A            2 DLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGA-FLDALAQR--QPRATYLPVELQDDAQCRDAVAQTI   78 (258)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHH-HHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHH-HHHHHHhc--CCCEEEEEeecCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999988754 45566665  5688999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          104 SQGRPLNILINNAGIMA-SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~-~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++||++|+||||||+.. .+.+.+.++|++.+++|+.++|+++|+++|+|++      ++|+||++||..+..       
T Consensus        79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~------~~G~IVnisS~~~~~-------  145 (258)
T 4gkb_A           79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKA------TRGAIVNISSKTAVT-------  145 (258)
T ss_dssp             HHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------HTCEEEEECCTHHHH-------
T ss_pred             HHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh------cCCeEEEEeehhhcc-------
Confidence            99999999999999874 3567899999999999999999999999999975      258999999999887       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +.+....|++||+|+.+|+|++|.|++++|  ||||+|+||+|+|++++.+
T Consensus       146 --------~~~~~~~Y~asKaav~~ltr~lA~ela~~g--IrVN~V~PG~i~T~~~~~~  194 (258)
T 4gkb_A          146 --------GQGNTSGYCASKGAQLALTREWAVALREHG--VRVNAVIPAEVMTPLYRNW  194 (258)
T ss_dssp             --------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBCCSCC---
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHhcccC--eEEEEEecCCCCChhHhhh
Confidence                    556778999999999999999999999999  9999999999999998764

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=100.00  E-value=6.5e-45  Score=307.41  Aligned_cols=189  Identities=22%  Similarity=0.274  Sum_probs=169.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      -+++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++++|++|+++++++++++.+
T Consensus        25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~~~   99 (273)
T 4fgs_A           25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-----GGGAVGIQADSANLAELDRLYEKVKA   99 (273)
T ss_dssp             CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeEEEEecCCCHHHHHHHHHHHHH
Confidence            3589999999999999999999999999999999999999888877776     55789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      +||++|+||||||...  ++.+++.++|++.+++|+.|+|+++|+++|+|++       .|+||++||..+..       
T Consensus       100 ~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~-------~G~IInisS~~~~~-------  165 (273)
T 4fgs_A          100 EAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLAR-------GSSVVLTGSTAGST-------  165 (273)
T ss_dssp             HHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE-------EEEEEEECCGGGGS-------
T ss_pred             HcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhh-------CCeEEEEeehhhcc-------
Confidence            9999999999999763  5778999999999999999999999999999964       68999999999876       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                              +.+....|+++|+|+.+|+|++|.|++++|  ||||+|+||+|+|+++....
T Consensus       166 --------~~~~~~~Y~asKaav~~ltr~lA~Ela~~g--IrVN~V~PG~i~T~~~~~~~  215 (273)
T 4fgs_A          166 --------GTPAFSVYAASKAALRSFARNWILDLKDRG--IRINTLSPGPTETTGLVELA  215 (273)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSC--EEEEEEEECSBCC-------
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHhcccC--eEEEEEeeCCCCChhHHHhh
Confidence                    556778999999999999999999999999  99999999999999876653

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=100.00  E-value=2.9e-44  Score=298.47  Aligned_cols=192  Identities=25%  Similarity=0.318  Sum_probs=169.0

Q ss_pred             cccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           21 VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        21 ~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      |.+.++++||++|||||++|||+++|++|+++|++|++++|+.+  ++..+++.+.  +.++.++++|++|+++++.+++
T Consensus         1 M~n~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~~~   76 (247)
T 4hp8_A            1 MKNPFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKD--GGNASALLIDFADPLAAKDSFT   76 (247)
T ss_dssp             --CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHT--TCCEEEEECCTTSTTTTTTSST
T ss_pred             CcCCcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHh--CCcEEEEEccCCCHHHHHHHHH
Confidence            34557999999999999999999999999999999999999864  4566667665  6689999999999988876653


Q ss_pred             HHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          101 EYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                           +|++|+||||||+..  ++.+++.++|++++++|+.|+|+++|+++|+|.++    ++.|+||++||..+..   
T Consensus        77 -----~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~----g~~G~IVnisS~~~~~---  144 (247)
T 4hp8_A           77 -----DAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAK----GRSGKVVNIASLLSFQ---  144 (247)
T ss_dssp             -----TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TCCEEEEEECCGGGTS---
T ss_pred             -----hCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----CCCcEEEEEechhhCC---
Confidence                 589999999999874  56789999999999999999999999999999763    4579999999999876   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                  +.++...|++||+|+.+|+|++|.|++++|  ||||+|+||+|+|++.+...
T Consensus       145 ------------g~~~~~~Y~asKaav~~ltr~lA~Ela~~g--IrVNaV~PG~i~T~~~~~~~  194 (247)
T 4hp8_A          145 ------------GGIRVPSYTAAKHGVAGLTKLLANEWAAKG--INVNAIAPGYIETNNTEALR  194 (247)
T ss_dssp             ------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSGGGHHHH
T ss_pred             ------------CCCCChHHHHHHHHHHHHHHHHHHHHhhcC--eEEEEEeeCCCCCcchhhcc
Confidence                        556778999999999999999999999999  99999999999999987543

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=100.00  E-value=1.8e-43  Score=293.03  Aligned_cols=182  Identities=26%  Similarity=0.278  Sum_probs=160.8

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++||++|||||++|||+++|++|+++|++|++++|+.+.+++.        .+.++..+++|++|++++++++++    +
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~--------~~~~~~~~~~Dv~~~~~v~~~~~~----~   76 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP--------RHPRIRREELDITDSQRLQRLFEA----L   76 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC--------CCTTEEEEECCTTCHHHHHHHHHH----C
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh--------hcCCeEEEEecCCCHHHHHHHHHh----c
Confidence            5899999999999999999999999999999999998765321        145789999999999999888764    7


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      |++|+||||||+..+..+++.++|++++++|+.|+|+++|+++|+|++      ++|+||++||..+..           
T Consensus        77 g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~------~~G~IVnisS~~~~~-----------  139 (242)
T 4b79_A           77 PRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQ------RGGSILNIASMYSTF-----------  139 (242)
T ss_dssp             SCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHH------HCEEEEEECCGGGTS-----------
T ss_pred             CCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH------cCCeEEEEeeccccC-----------
Confidence            899999999999888888999999999999999999999999999976      369999999999877           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                          +.++...|++||+|+.+|+|++|.|++++|  ||||+|+||+|+|||.+....
T Consensus       140 ----~~~~~~~Y~asKaav~~ltr~lA~Ela~~g--IrVNaV~PG~i~T~m~~~~~~  190 (242)
T 4b79_A          140 ----GSADRPAYSASKGAIVQLTRSLACEYAAER--IRVNAIAPGWIDTPLGAGLKA  190 (242)
T ss_dssp             ----CCSSCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCC-----CC
T ss_pred             ----CCCCCHHHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEEeCCCCChhhhcccC
Confidence                556778999999999999999999999999  999999999999999876543

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=100.00  E-value=7.6e-43  Score=290.90  Aligned_cols=183  Identities=21%  Similarity=0.220  Sum_probs=163.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++|||||++|||+++|++|+++|++|++++|+.+.+++..+    .  ..++.++++|++|+++++++++++.++||+
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~----~--~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~   75 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK----E--RPNLFYFHGDVADPLTLKKFVEYAMEKLQR   75 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT----T--CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----h--cCCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5999999999999999999999999999999999776554433    3  457899999999999999999999999999


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|+||||||...  ++.+++.++|++++++|+.++|+++|+++|+|.+      ++|+||++||..+..           
T Consensus        76 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~------~~G~IInisS~~~~~-----------  138 (247)
T 3ged_A           76 IDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIK------NKGRIINIASTRAFQ-----------  138 (247)
T ss_dssp             CCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------TTCEEEEECCGGGTS-----------
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh------cCCcEEEEeeccccc-----------
Confidence            999999999774  4678899999999999999999999999999986      358999999999876           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                          +.+....|++||+|+.+|+|++|.|+++ |  ||||+|+||+|+|++.+..
T Consensus       139 ----~~~~~~~Y~asKaal~~ltk~lA~ela~-~--IrVN~I~PG~i~t~~~~~~  186 (247)
T 3ged_A          139 ----SEPDSEAYASAKGGIVALTHALAMSLGP-D--VLVNCIAPGWINVTEQQEF  186 (247)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHTT-T--SEEEEEEECSBCCCC---C
T ss_pred             ----CCCCCHHHHHHHHHHHHHHHHHHHHHCC-C--CEEEEEecCcCCCCCcHHH
Confidence                5567789999999999999999999986 7  9999999999999986543

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=100.00  E-value=1.1e-42  Score=292.75  Aligned_cols=184  Identities=20%  Similarity=0.233  Sum_probs=165.0

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..++++||++|||||++|||+++|++|+++|++|++++|+.++.            ..+..++++|++|+++++.+++++
T Consensus         5 dl~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~~   72 (261)
T 4h15_A            5 EFLNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG------------LPEELFVEADLTTKEGCAIVAEAT   72 (261)
T ss_dssp             CCCCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT------------SCTTTEEECCTTSHHHHHHHHHHH
T ss_pred             hccCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC------------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999986531            234568999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          103 NSQGRPLNILINNAGIMA----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      .+++|++|+||||||+..    ++.+.+.++|++.+++|+.++++++|+++|+|++     ++.|+||++||..+..   
T Consensus        73 ~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~-----~~~G~Iv~isS~~~~~---  144 (261)
T 4h15_A           73 RQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVA-----RGSGVVVHVTSIQRVL---  144 (261)
T ss_dssp             HHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS---
T ss_pred             HHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhh-----cCCceEEEEEehhhcc---
Confidence            999999999999999753    4567899999999999999999999999999987     4679999999998876   


Q ss_pred             cCccCCCCCcccCCC-CccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          179 EGIRFDKINDESAYN-SFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~-~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                  +.+ +...|++||+|+.+|+|+++.|++++|  ||||+|+||+|+|++...
T Consensus       145 ------------~~~~~~~~Y~asKaal~~lt~~lA~Ela~~g--IrVN~V~PG~i~T~~~~~  193 (261)
T 4h15_A          145 ------------PLPESTTAYAAAKAALSTYSKAMSKEVSPKG--VRVVRVSPGWIETEASVR  193 (261)
T ss_dssp             ------------CCTTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCCHHHHH
T ss_pred             ------------CCCCccHHHHHHHHHHHHHHHHHHHHhhhhC--eEEEEEeCCCcCCcchhh
Confidence                        332 467899999999999999999999999  999999999999998754

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=100.00  E-value=8.3e-42  Score=287.30  Aligned_cols=195  Identities=18%  Similarity=0.185  Sum_probs=175.1

Q ss_pred             CCCCCCcEEEEecCCC--chHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~--giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      +++++||++|||||+|  |||+++|++|+++|++|++++|+.+.++++.+.+.+. ++.++.++++|++|++++++++++
T Consensus         1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQL-NQPEAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGG-TCSSCEEEECCTTCHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCCcEEEEEccCCCHHHHHHHHHH
Confidence            5789999999999875  9999999999999999999999998888888777665 345789999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          102 YNSQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      +.+++|++|++|||||+..      +..+.+.++|...+++|+.+++.+++.+.+++++       +|+||++||..+..
T Consensus        80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~-------~G~IVnisS~~~~~  152 (256)
T 4fs3_A           80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPE-------GGSIVATTYLGGEF  152 (256)
T ss_dssp             HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTT-------CEEEEEEECGGGTS
T ss_pred             HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCEEEEEecccccc
Confidence            9999999999999999753      3356788999999999999999999999887643       79999999999876


Q ss_pred             ccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          176 AYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                                     +.+++..|++||+|+.+|+|+++.|++++|  ||||+|+||+++|++.+....
T Consensus       153 ---------------~~~~~~~Y~asKaal~~ltr~lA~Ela~~g--IrVN~V~PG~i~T~~~~~~~~  203 (256)
T 4fs3_A          153 ---------------AVQNYNVMGVAKASLEANVKYLALDLGPDN--IRVNAISAGPIRTLSAKGVGG  203 (256)
T ss_dssp             ---------------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCCCSGGGTTCTT
T ss_pred             ---------------CcccchhhHHHHHHHHHHHHHHHHHhCccC--eEEEEEecCCCCChhhhhccC
Confidence                           566788999999999999999999999999  999999999999999876543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=100.00  E-value=1.3e-40  Score=281.17  Aligned_cols=197  Identities=21%  Similarity=0.224  Sum_probs=180.0

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++....++.++.++.+|++|+++++.+++++
T Consensus         2 ~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   81 (265)
T 3lf2_A            2 KPYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEAC   81 (265)
T ss_dssp             -CCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CccCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999998887655656999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+.+|++|+||||||+..  ++.+.+.++|++.+++|+.++++++++++|+|.+     ++.|+||++||..+..     
T Consensus        82 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~-----  151 (265)
T 3lf2_A           82 ERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLES-----RADAAIVCVNSLLASQ-----  151 (265)
T ss_dssp             HHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----STTEEEEEEEEGGGTS-----
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCeEEEEECCcccCC-----
Confidence            999999999999999863  4567899999999999999999999999999986     5578999999998876     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                +.++...|+++|+|+++|+++++.|++++|  |+||+|+||+++|++.+..
T Consensus       152 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--i~vn~v~PG~v~t~~~~~~  200 (265)
T 3lf2_A          152 ----------PEPHMVATSAARAGVKNLVRSMAFEFAPKG--VRVNGILIGLVESGQWRRR  200 (265)
T ss_dssp             ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHHH
T ss_pred             ----------CCCCchhhHHHHHHHHHHHHHHHHHhcccC--eEEEEEEeCcCcCchhhhh
Confidence                      556778999999999999999999999998  9999999999999987653

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=100.00  E-value=2e-40  Score=277.51  Aligned_cols=194  Identities=28%  Similarity=0.386  Sum_probs=175.3

Q ss_pred             ccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ..++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.     .+..++++|++|++++++++++
T Consensus         2 ~~~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~   76 (248)
T 3op4_A            2 SQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG-----DNGKGMALNVTNPESIEAVLKA   76 (248)
T ss_dssp             CCTTCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----ccceEEEEeCCCHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999888877777663     3578899999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.+++|++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|+|.+     ++.|+||++||..+..    
T Consensus        77 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~-----~~~g~iv~isS~~~~~----  147 (248)
T 3op4_A           77 ITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMK-----KRQGRIINVGSVVGTM----  147 (248)
T ss_dssp             HHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCHHHHH----
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCCEEEEEcchhhcC----
Confidence            9999999999999999874  3467899999999999999999999999999987     4578999999999876    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                 +.++...|++||+|+++|+++++.|+.++|  |+||+|+||+++|++.+...
T Consensus       148 -----------~~~~~~~Y~asK~a~~~l~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~~~  197 (248)
T 3op4_A          148 -----------GNAGQANYAAAKAGVIGFTKSMAREVASRG--VTVNTVAPGFIETDMTKALN  197 (248)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBSSTTTTTSC
T ss_pred             -----------CCCCChHHHHHHHHHHHHHHHHHHHHHHhC--eEEEEEeeCCCCCchhhhcC
Confidence                       555778999999999999999999999998  99999999999999976543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=100.00  E-value=5.3e-40  Score=275.58  Aligned_cols=194  Identities=20%  Similarity=0.214  Sum_probs=166.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.+.  +.++.++++|++|+++++++++++.
T Consensus         2 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~   79 (252)
T 3h7a_A            2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA--GGRIVARSLDARNEDEVTAFLNAAD   79 (252)
T ss_dssp             ---CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECcCCCHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999998876  6689999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      ++ |++|+||||||...  ++.+.+.++|++.+++|+.|+++++++++|+|++     ++.|+||++||..+..      
T Consensus        80 ~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~------  147 (252)
T 3h7a_A           80 AH-APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLA-----HGQGKIFFTGATASLR------  147 (252)
T ss_dssp             HH-SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEEEEGGGTC------
T ss_pred             hh-CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEECCHHHcC------
Confidence            98 99999999999864  3557899999999999999999999999999987     3568999999999876      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEE-EEeeCCceecCcccccC
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITA-NSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~v-n~v~PG~v~t~~~~~~~  242 (255)
                               +.++...|++||+|+++|+++++.|++++|  |+| |+|+||+++|++.+...
T Consensus       148 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--i~v~n~v~PG~v~T~~~~~~~  198 (252)
T 3h7a_A          148 ---------GGSGFAAFASAKFGLRAVAQSMARELMPKN--IHVAHLIIDSGVDTAWVRERR  198 (252)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEEC------------
T ss_pred             ---------CCCCCccHHHHHHHHHHHHHHHHHHhhhcC--CEEEEEecCCccCChhhhccc
Confidence                     555778999999999999999999999998  999 99999999999987653

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=100.00  E-value=2.2e-40  Score=280.85  Aligned_cols=195  Identities=25%  Similarity=0.328  Sum_probs=178.4

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .+++++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++++|++|+++++++++++
T Consensus        20 ~~~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~   97 (271)
T 4ibo_A           20 IIFDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNV--GHDAEAVAFDVTSESEIIEAFARL   97 (271)
T ss_dssp             GGGCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999999999888775  568999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+++|++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|+|.+     ++.|+||++||..+..     
T Consensus        98 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~~~g~iV~isS~~~~~-----  167 (271)
T 4ibo_A           98 DEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIP-----RGYGKIVNIGSLTSEL-----  167 (271)
T ss_dssp             HHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS-----
T ss_pred             HHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEEccHHhCC-----
Confidence            999999999999999863  4567899999999999999999999999999987     3568999999998776     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                +.++...|+++|+++++|+++++.|++++|  |+||+|+||+++|++.+..
T Consensus       168 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~~  216 (271)
T 4ibo_A          168 ----------ARATVAPYTVAKGGIKMLTRAMAAEWAQYG--IQANAIGPGYMLTDMNQAL  216 (271)
T ss_dssp             ----------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSGGGHHH
T ss_pred             ----------CCCCchhHHHHHHHHHHHHHHHHHHHhhhC--eEEEEEEeccEeCcchhhc
Confidence                      555778999999999999999999999998  9999999999999987653

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=100.00  E-value=5.2e-40  Score=276.20  Aligned_cols=195  Identities=28%  Similarity=0.342  Sum_probs=178.1

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.+.  +.++.++++|++|+++++++++++
T Consensus         6 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~   83 (256)
T 3gaf_A            6 SPFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA--GGKAIGLECNVTDEQHREAVIKAA   83 (256)
T ss_dssp             CTTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999888888888765  568999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          103 NSQGRPLNILINNAGIMAS-PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      .+++|++|+||||||...+ ..+.+.++|++.+++|+.|+++++++++|+|++     .+.|+||++||..+..      
T Consensus        84 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~------  152 (256)
T 3gaf_A           84 LDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQK-----AGGGAILNISSMAGEN------  152 (256)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCEEEEEECCGGGTC------
T ss_pred             HHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEEcCHHHcC------
Confidence            9999999999999998743 237889999999999999999999999999987     5678999999999876      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++...|++||+++++|+++++.|++++|  |+||+|+||+++|++.+..
T Consensus       153 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~~  201 (256)
T 3gaf_A          153 ---------TNVRMASYGSSKAAVNHLTRNIAFDVGPMG--IRVNAIAPGAIKTDALATV  201 (256)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCCHHHHHH
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHHhhhC--cEEEEEEEccccCchhhhc
Confidence                     555778999999999999999999999998  9999999999999987643

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=100.00  E-value=2.5e-40  Score=280.12  Aligned_cols=207  Identities=29%  Similarity=0.333  Sum_probs=174.2

Q ss_pred             CCCCCCCcccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-ccchHHHHHHHHHhhCCCCceEEEEeC
Q 025275           10 SGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELD   88 (255)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~D   88 (255)
                      +...........+..+++++|++|||||++|||+++|++|+++|++|++++| +.+.+++..+++...  +.++.++++|
T Consensus         9 ~~~~~~~~~~~~m~~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D   86 (269)
T 4dmm_A            9 HHSSGLVPRGSHMTALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA--GGEAFAVKAD   86 (269)
T ss_dssp             ---------------CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             CCCCcCCCccccccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCcEEEEECC
Confidence            3334445556666778899999999999999999999999999999999998 555667777777665  5689999999


Q ss_pred             CCCHHHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEE
Q 025275           89 VSSLASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIV  166 (255)
Q Consensus        89 l~~~~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii  166 (255)
                      ++|+++++++++++.+++|++|+||||||...  +..+.+.++|++.+++|+.|+++++++++|+|.+     .+.|+||
T Consensus        87 ~~d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~~~g~iv  161 (269)
T 4dmm_A           87 VSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLK-----QRSGRII  161 (269)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCCEEE
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCcEEE
Confidence            99999999999999999999999999999874  3457889999999999999999999999999987     4578999


Q ss_pred             EecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          167 NVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       167 ~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      ++||..+..               +.++...|++||+|+++|+++++.|++++|  |+||+|+||+++|++...
T Consensus       162 ~isS~~~~~---------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~  218 (269)
T 4dmm_A          162 NIASVVGEM---------------GNPGQANYSAAKAGVIGLTKTVAKELASRG--ITVNAVAPGFIATDMTSE  218 (269)
T ss_dssp             EECCHHHHH---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCBTTSCSCH
T ss_pred             EECchhhcC---------------CCCCchhHHHHHHHHHHHHHHHHHHHhhhC--cEEEEEEECCCcCccccc
Confidence            999998876               455778999999999999999999999998  999999999999998764

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.6e-40  Score=276.35  Aligned_cols=198  Identities=25%  Similarity=0.375  Sum_probs=171.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCC-CceEEEEeCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPS-AKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.+..++ .++.++++|++|+++++++++++
T Consensus         2 ~~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   81 (250)
T 3nyw_A            2 SLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDI   81 (250)
T ss_dssp             ---CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999988776544 67899999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          103 NSQGRPLNILINNAGIMAS-PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      .+++|++|+||||||+... ..+.+.++|.+.+++|+.++++++++++|+|++     ++.|+||++||..+..      
T Consensus        82 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~------  150 (250)
T 3nyw_A           82 HQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKV-----QKNGYIFNVASRAAKY------  150 (250)
T ss_dssp             HHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECC-----------
T ss_pred             HHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCeEEEEEccHHhcC------
Confidence            9999999999999998632 236788999999999999999999999999987     3578999999998776      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                               +..+...|+++|+++++|+++++.++.++|  |+||+|+||+++|++.+....
T Consensus       151 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~~~~  201 (250)
T 3nyw_A          151 ---------GFADGGIYGSTKFALLGLAESLYRELAPLG--IRVTTLCPGWVNTDMAKKAGT  201 (250)
T ss_dssp             -----------CCTTHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESSBCSHHHHHTTC
T ss_pred             ---------CCCCCcchHHHHHHHHHHHHHHHHHhhhcC--cEEEEEecCcccCchhhhcCC
Confidence                     333568999999999999999999999988  999999999999999876544

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=100.00  E-value=6e-40  Score=276.73  Aligned_cols=196  Identities=28%  Similarity=0.341  Sum_probs=177.8

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.+.. ..++.++++|++|+++++++++++
T Consensus         4 ~m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~   82 (262)
T 3pk0_A            4 SMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRA   82 (262)
T ss_dssp             CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999988888887652 358999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc-ccccc
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR-FAYSE  179 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~-~~~~~  179 (255)
                      .+++|++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|+|++     ++.|+||++||..+. .    
T Consensus        83 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~-----~~~g~iv~isS~~~~~~----  153 (262)
T 3pk0_A           83 VEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIA-----SGSGRVVLTSSITGPIT----  153 (262)
T ss_dssp             HHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HSSCEEEEECCSBTTTB----
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEEechhhccC----
Confidence            999999999999999764  4567899999999999999999999999999987     456899999998875 3    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                 +.++...|++||+++++|+++++.|++++|  |+||+|+||+++|++....
T Consensus       154 -----------~~~~~~~Y~asK~a~~~l~~~la~e~~~~g--i~vn~v~PG~v~t~~~~~~  202 (262)
T 3pk0_A          154 -----------GYPGWSHYGATKAAQLGFMRTAAIELAPHK--ITVNAIMPGNIMTEGLLEN  202 (262)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBCCHHHHTT
T ss_pred             -----------CCCCChhhHHHHHHHHHHHHHHHHHHHhhC--cEEEEEEeCcCcCcccccc
Confidence                       455778999999999999999999999998  9999999999999987643

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=100.00  E-value=1.4e-39  Score=276.61  Aligned_cols=203  Identities=27%  Similarity=0.304  Sum_probs=179.0

Q ss_pred             ccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHH
Q 025275           18 AEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRK   97 (255)
Q Consensus        18 ~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~   97 (255)
                      +-..+..+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++++|++|++++++
T Consensus        21 ~m~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~   98 (276)
T 3r1i_A           21 SMSVLDLFDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV--GGKALPIRCDVTQPDQVRG   98 (276)
T ss_dssp             --CGGGGGCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCCCEEEECCTTCHHHHHH
T ss_pred             CcccccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHH
Confidence            33344567899999999999999999999999999999999999999999999888775  5689999999999999999


Q ss_pred             HHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275           98 FASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus        98 ~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      +++++.+++|++|+||||||...  +..+.+.++|++.+++|+.|+++++++++|+|.++    +.+|+||++||..+..
T Consensus        99 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~----~~~g~iv~isS~~~~~  174 (276)
T 3r1i_A           99 MLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQ----GLGGTIITTASMSGHI  174 (276)
T ss_dssp             HHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcEEEEECchHhcc
Confidence            99999999999999999999874  35578899999999999999999999999999873    3358999999998765


Q ss_pred             ccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          176 AYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      ..             ...+...|++||+++++|+++++.|++++|  |+||+|+||+|+|++.+..
T Consensus       175 ~~-------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--Irvn~v~PG~v~T~~~~~~  225 (276)
T 3r1i_A          175 IN-------------IPQQVSHYCTSKAAVVHLTKAMAVELAPHQ--IRVNSVSPGYIRTELVEPL  225 (276)
T ss_dssp             CC-------------CSSCCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCSTTTGGG
T ss_pred             cC-------------CCCCcchHHHHHHHHHHHHHHHHHHHhhcC--cEEEEEeeCCCcCCccccc
Confidence            21             112457899999999999999999999998  9999999999999998754

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=100.00  E-value=6.4e-40  Score=277.16  Aligned_cols=200  Identities=25%  Similarity=0.329  Sum_probs=179.7

Q ss_pred             ccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           20 EVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        20 ~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      ....++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.+.. +.++.++++|++|++++++++
T Consensus        11 ~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~   89 (266)
T 4egf_A           11 RYAGVLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELA   89 (266)
T ss_dssp             CBCGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHH
T ss_pred             hcccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHH
Confidence            3445678999999999999999999999999999999999999999888888887632 568999999999999999999


Q ss_pred             HHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          100 SEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      +++.+++|++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|+|.++    +..|+||++||..+..  
T Consensus        90 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----~~~g~iv~isS~~~~~--  163 (266)
T 4egf_A           90 RRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAA----GEGGAIITVASAAALA--  163 (266)
T ss_dssp             HHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TSCEEEEEECCGGGTS--
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc----CCCeEEEEEcchhhcc--
Confidence            999999999999999999874  34678899999999999999999999999999873    3368999999998776  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                   +.++...|+++|+|+++|+++++.|++++|  |+||+|+||+++|++.+..
T Consensus       164 -------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~~  212 (266)
T 4egf_A          164 -------------PLPDHYAYCTSKAGLVMATKVLARELGPHG--IRANSVCPTVVLTEMGQRV  212 (266)
T ss_dssp             -------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCBCSHHHHHH
T ss_pred             -------------CCCCChHHHHHHHHHHHHHHHHHHHHhhhC--eEEEEEEeCCCcCchhhhh
Confidence                         555778999999999999999999999998  9999999999999987643

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=100.00  E-value=1.6e-39  Score=276.64  Aligned_cols=194  Identities=28%  Similarity=0.279  Sum_probs=172.5

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec------------cchHHHHHHHHHhhCCCCceEEEEeCCC
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN------------MAAGKDVREAIVKEIPSAKVDAMELDVS   90 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   90 (255)
                      .+.++++|++|||||++|||+++|++|+++|++|++++|+            .+.+++..+.+...  +.++.++++|++
T Consensus         4 ~m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   81 (281)
T 3s55_A            4 SMADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT--GRRCISAKVDVK   81 (281)
T ss_dssp             --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTT
T ss_pred             cccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhc--CCeEEEEeCCCC
Confidence            3567899999999999999999999999999999999997            34555666666554  568999999999


Q ss_pred             CHHHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEe
Q 025275           91 SLASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNV  168 (255)
Q Consensus        91 ~~~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~v  168 (255)
                      |+++++++++++.+++|++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|+|.+     ++.|+||++
T Consensus        82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~i  156 (281)
T 3s55_A           82 DRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIK-----RNYGRIVTV  156 (281)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCCEEEEE
Confidence            999999999999999999999999999764  4567899999999999999999999999999987     357899999


Q ss_pred             cCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          169 SSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       169 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      ||..+..               +.++...|++||+|+++|+++++.|++++|  |+||+|+||+++|++.+.
T Consensus       157 sS~~~~~---------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~vn~v~PG~v~t~~~~~  211 (281)
T 3s55_A          157 SSMLGHS---------------ANFAQASYVSSKWGVIGLTKCAAHDLVGYG--ITVNAVAPGNIETPMTHN  211 (281)
T ss_dssp             CCGGGGS---------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEEECSBCSTTTSS
T ss_pred             CChhhcC---------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcC--cEEEEEecCcccCccccc
Confidence            9998876               555778999999999999999999999988  999999999999998753

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=100.00  E-value=2e-39  Score=276.00  Aligned_cols=195  Identities=27%  Similarity=0.295  Sum_probs=174.1

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-------------ccchHHHHHHHHHhhCCCCceEEEEeCC
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR-------------NMAAGKDVREAIVKEIPSAKVDAMELDV   89 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl   89 (255)
                      .+.+++||++|||||++|||+++|++|+++|++|++++|             +.+.+++..+++...  +.++.++++|+
T Consensus         9 ~~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv   86 (280)
T 3pgx_A            9 QAGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ--GRKALTRVLDV   86 (280)
T ss_dssp             --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT--TCCEEEEECCT
T ss_pred             cccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEEcCC
Confidence            456789999999999999999999999999999999998             556677777777655  66899999999


Q ss_pred             CCHHHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEE
Q 025275           90 SSLASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVN  167 (255)
Q Consensus        90 ~~~~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~  167 (255)
                      +|+++++++++++.+++|++|+||||||...  +..+.+.++|++++++|+.++++++++++|+|.++    +.+|+||+
T Consensus        87 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~----~~~g~iv~  162 (280)
T 3pgx_A           87 RDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEA----GNGGSIVV  162 (280)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----CSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc----CCCCEEEE
Confidence            9999999999999999999999999999874  45678999999999999999999999999999873    23789999


Q ss_pred             ecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          168 VSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       168 vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      +||..+..               +.++...|++||+++++|+++++.|++++|  |+||+|+||+++|++.+.
T Consensus       163 isS~~~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~vn~v~PG~v~t~~~~~  218 (280)
T 3pgx_A          163 VSSSAGLK---------------ATPGNGHYSASKHGLTALTNTLAIELGEYG--IRVNSIHPYSVETPMIEP  218 (280)
T ss_dssp             ECCGGGTS---------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSTTCCH
T ss_pred             Ecchhhcc---------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeeCcccCcccch
Confidence            99999876               555778999999999999999999999998  999999999999998764

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=100.00  E-value=3e-39  Score=277.46  Aligned_cols=195  Identities=20%  Similarity=0.195  Sum_probs=174.7

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec------------cchHHHHHHHHHhhCCCCceEEEEeCCC
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN------------MAAGKDVREAIVKEIPSAKVDAMELDVS   90 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   90 (255)
                      ++.++++|++|||||++|||+++|++|+++|++|++++|+            .+.+++..+++...  +.++.++++|++
T Consensus        22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   99 (299)
T 3t7c_A           22 MAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL--GRRIIASQVDVR   99 (299)
T ss_dssp             CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTT
T ss_pred             cccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc--CCceEEEECCCC
Confidence            4467899999999999999999999999999999999987            55667777777665  568999999999


Q ss_pred             CHHHHHHHHHHHhcCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEE
Q 025275           91 SLASVRKFASEYNSQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVN  167 (255)
Q Consensus        91 ~~~si~~~~~~~~~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~  167 (255)
                      |+++++++++++.+++|++|+||||||+..   +..+.+.++|++.+++|+.|+++++++++|+|.+.    ++.|+||+
T Consensus       100 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----~~~g~Iv~  175 (299)
T 3t7c_A          100 DFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAG----KRGGSIVF  175 (299)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT----TSCEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCcEEEE
Confidence            999999999999999999999999999764   25678999999999999999999999999998762    34689999


Q ss_pred             ecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          168 VSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       168 vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      +||..+..               +.++...|++||+|+++|+++++.|++++|  |+||+|+||+|+|++...
T Consensus       176 isS~~~~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~  231 (299)
T 3t7c_A          176 TSSIGGLR---------------GAENIGNYIASKHGLHGLMRTMALELGPRN--IRVNIVCPSSVATPMLLN  231 (299)
T ss_dssp             ECCGGGTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCBSSTTTSS
T ss_pred             ECChhhcc---------------CCCCcchHHHHHHHHHHHHHHHHHHhcccC--cEEEEEecCCccCccccc
Confidence            99999876               555778999999999999999999999998  999999999999998753

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.6e-39  Score=276.37  Aligned_cols=192  Identities=31%  Similarity=0.341  Sum_probs=172.3

Q ss_pred             ccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      +..+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++++|++|++++++++++
T Consensus        22 m~~~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~   96 (277)
T 3gvc_A           22 MNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-----GCGAAACRVDVSDEQQIIAMVDA   96 (277)
T ss_dssp             -----CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CSSCEEEECCTTCHHHHHHHHHH
T ss_pred             CCccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCcceEEEecCCCHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999988877777665     55789999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.+++|++|+||||||+..  ++.+.+.++|++.+++|+.|+++++++++|.|.+     ++.|+||++||..+..    
T Consensus        97 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-----~~~g~Iv~isS~~~~~----  167 (277)
T 3gvc_A           97 CVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIE-----RGGGAIVNLSSLAGQV----  167 (277)
T ss_dssp             HHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCEEEEEECCGGGTS----
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEEcchhhcc----
Confidence            9999999999999999863  4567899999999999999999999999999987     5678999999998776    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                 +.++...|+++|+++++|+++++.|++++|  |+||+|+||+++|++.+.
T Consensus       168 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~t~~~~~  215 (277)
T 3gvc_A          168 -----------AVGGTGAYGMSKAGIIQLSRITAAELRSSG--IRSNTLLPAFVDTPMQQT  215 (277)
T ss_dssp             -----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHH
T ss_pred             -----------CCCCchhHHHHHHHHHHHHHHHHHHhcccC--eEEEEEeeCCccCchHHH
Confidence                       555778999999999999999999999998  999999999999998765

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=100.00  E-value=1.1e-39  Score=276.40  Aligned_cols=195  Identities=29%  Similarity=0.332  Sum_probs=177.7

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +..++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.+.  +.++.++.+|++|+++++++++++
T Consensus        22 m~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~   99 (270)
T 3ftp_A           22 MDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA--GLEGRGAVLNVNDATAVDALVEST   99 (270)
T ss_dssp             -CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEEeCCCHHHHHHHHHHH
Confidence            345688999999999999999999999999999999999999888888888776  567899999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+++|++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+     .+.|+||++||..+..     
T Consensus       100 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~-----  169 (270)
T 3ftp_A          100 LKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMK-----ARGGRIVNITSVVGSA-----  169 (270)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCHHHHH-----
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCCEEEEECchhhCC-----
Confidence            999999999999999764  4567889999999999999999999999999987     4578999999999876     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                +.++...|++||+|+++|+++++.|++++|  |+||+|+||+++|++.+..
T Consensus       170 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~~  218 (270)
T 3ftp_A          170 ----------GNPGQVNYAAAKAGVAGMTRALAREIGSRG--ITVNCVAPGFIDTDMTKGL  218 (270)
T ss_dssp             ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSHHHHHS
T ss_pred             ----------CCCCchhHHHHHHHHHHHHHHHHHHHhhhC--eEEEEEEeCCCcCcchhhc
Confidence                      555778999999999999999999999998  9999999999999987654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.7e-39  Score=276.93  Aligned_cols=197  Identities=31%  Similarity=0.335  Sum_probs=174.1

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++++|++|+++++++++++
T Consensus        22 ~m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~   99 (283)
T 3v8b_A           22 SMMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA--GGQAIALEADVSDELQMRNAVRDL   99 (283)
T ss_dssp             -----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             hhcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999888888888654  568999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          103 NSQGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      .+++|++|+||||||+.   .+..+.+.++|++.+++|+.|+++++++++|+|++     ++.|+||++||..+....  
T Consensus       100 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-----~~~g~Iv~isS~~~~~~~--  172 (283)
T 3v8b_A          100 VLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQ-----RGGGAIVVVSSINGTRTF--  172 (283)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCSBTTTBC--
T ss_pred             HHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCceEEEEcChhhccCC--
Confidence            99999999999999975   35667899999999999999999999999999987     457899999998875411  


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                 +.++...|++||+|+++|+++++.|++++|  |+||+|+||+++|++.+..
T Consensus       173 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~~  221 (283)
T 3v8b_A          173 -----------TTPGATAYTATKAAQVAIVQQLALELGKHH--IRVNAVCPGAIETNISDNT  221 (283)
T ss_dssp             -----------CSTTCHHHHHHHHHHHHHHHHHHHHTTTTT--EEEEEEEECSBSSCTTCCT
T ss_pred             -----------CCCCchHHHHHHHHHHHHHHHHHHHhCccC--cEEEEEEeCCCcCCccccc
Confidence                       234678899999999999999999999988  9999999999999997654

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=100.00  E-value=1.5e-39  Score=278.58  Aligned_cols=202  Identities=26%  Similarity=0.310  Sum_probs=178.9

Q ss_pred             ccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHH
Q 025275           18 AEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRK   97 (255)
Q Consensus        18 ~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~   97 (255)
                      +.....++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.+.. ..++.++++|++|++++++
T Consensus        30 ~~~~~~m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~  108 (293)
T 3rih_A           30 PAERKVMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCAD  108 (293)
T ss_dssp             ----CCTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHH
T ss_pred             CcccccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHH
Confidence            334445678999999999999999999999999999999999999999999888886652 2589999999999999999


Q ss_pred             HHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc-
Q 025275           98 FASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR-  174 (255)
Q Consensus        98 ~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~-  174 (255)
                      +++++.+++|++|+||||||+..  ++.+.+.++|++.+++|+.|+++++++++|.|++     .+.|+||++||..+. 
T Consensus       109 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-----~~~g~iV~isS~~~~~  183 (293)
T 3rih_A          109 AARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTA-----SGRGRVILTSSITGPV  183 (293)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHH-----HSSCEEEEECCSBTTT
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCCEEEEEeChhhcc
Confidence            99999999999999999999874  4567899999999999999999999999999987     356899999998874 


Q ss_pred             cccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          175 FAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      .               +.++...|++||+++++|+++++.|++++|  |+||+|+||+|+|++.....
T Consensus       184 ~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~t~~~~~~~  234 (293)
T 3rih_A          184 T---------------GYPGWSHYGASKAAQLGFMRTAAIELAPRG--VTVNAILPGNILTEGLVDMG  234 (293)
T ss_dssp             B---------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBCCHHHHHTC
T ss_pred             C---------------CCCCCHHHHHHHHHHHHHHHHHHHHHhhhC--eEEEEEecCCCcCcchhhcc
Confidence            3               455778999999999999999999999998  99999999999999876543

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=100.00  E-value=3.5e-39  Score=275.20  Aligned_cols=194  Identities=23%  Similarity=0.223  Sum_probs=173.2

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec----------------cchHHHHHHHHHhhCCCCceEEEEe
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN----------------MAAGKDVREAIVKEIPSAKVDAMEL   87 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~----------------~~~~~~~~~~~~~~~~~~~~~~~~~   87 (255)
                      +.++++|++|||||++|||+++|++|+++|++|++++|+                .+.+++..+++...  +.++.++++
T Consensus         6 ~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   83 (286)
T 3uve_A            6 TGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEV   83 (286)
T ss_dssp             CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEEC
T ss_pred             CcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEc
Confidence            456899999999999999999999999999999999987                45566666666554  568999999


Q ss_pred             CCCCHHHHHHHHHHHhcCCCCeeEEEEccCCCCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCe
Q 025275           88 DVSSLASVRKFASEYNSQGRPLNILINNAGIMAS---PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGR  164 (255)
Q Consensus        88 Dl~~~~si~~~~~~~~~~~g~id~lv~~ag~~~~---~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~  164 (255)
                      |++|+++++++++++.+++|++|+||||||+...   ..+.+.++|++++++|+.++++++++++|+|.++    ++.|+
T Consensus        84 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~----~~~g~  159 (286)
T 3uve_A           84 DVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAG----GRGGS  159 (286)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TSCEE
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC----CCCcE
Confidence            9999999999999999999999999999997642   4568899999999999999999999999999873    33689


Q ss_pred             EEEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          165 IVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       165 ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      ||++||..+..               +.++...|++||+++++|+++++.|++++|  |+||+|+||+|+|++.+.
T Consensus       160 iv~isS~~~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~  218 (286)
T 3uve_A          160 IILTSSVGGLK---------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHM--IRVNSVHPTHVKTPMLHN  218 (286)
T ss_dssp             EEEECCGGGTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESSBSSTTTSS
T ss_pred             EEEECchhhcc---------------CCCCccHHHHHHHHHHHHHHHHHHHhcccC--eEEEEEecCcccCCcccc
Confidence            99999999876               555778999999999999999999999998  999999999999998764

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=100.00  E-value=2.5e-39  Score=275.54  Aligned_cols=197  Identities=21%  Similarity=0.185  Sum_probs=176.5

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      +.+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.+... +.++.++++|++|++++++++++
T Consensus         5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   84 (281)
T 3svt_A            5 MQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDA   84 (281)
T ss_dssp             ---CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999998888876522 23789999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          102 YNSQGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      +.+++|++|+||||||..   .+..+.+.++|++.+++|+.|+++++++++|+|.+     ++.|+||++||..+..   
T Consensus        85 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~---  156 (281)
T 3svt_A           85 VTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVR-----GGGGSFVGISSIAASN---  156 (281)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCEEEEEECCHHHHS---
T ss_pred             HHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEEeCHHHcC---
Confidence            999999999999999974   24567899999999999999999999999999987     5678999999998876   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                  +.++...|++||+++++|+++++.|++++|  |+||+|+||+++|++.+..
T Consensus       157 ------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~g--i~vn~v~PG~v~t~~~~~~  205 (281)
T 3svt_A          157 ------------THRWFGAYGVTKSAVDHLMQLAADELGASW--VRVNSIRPGLIRTDLVAAI  205 (281)
T ss_dssp             ------------CCTTCTHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSGGGHHH
T ss_pred             ------------CCCCChhHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEEeCcCcCcchhhc
Confidence                        455678999999999999999999999998  9999999999999987653

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.7e-39  Score=276.63  Aligned_cols=194  Identities=27%  Similarity=0.259  Sum_probs=175.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      +.++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++.+++++.
T Consensus         3 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~   80 (280)
T 3tox_A            3 MSRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG--GGEAAALAGDVGDEALHEALVELAV   80 (280)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT--TCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999888888888654  5689999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          104 SQGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      +++|++|+||||||+.   .+..+.+.++|++.+++|+.|+++++++++|+|.+     .+.|+||++||..+...    
T Consensus        81 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~~----  151 (280)
T 3tox_A           81 RRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAA-----LGGGSLTFTSSFVGHTA----  151 (280)
T ss_dssp             HHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCEEEEEECCSBTTTB----
T ss_pred             HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCCEEEEEcChhhCcC----
Confidence            9999999999999976   34567899999999999999999999999999987     56789999999887621    


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +.++...|++||+|+++|+++++.|++++|  |+||+|+||+|+|++...
T Consensus       152 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--Irvn~v~PG~v~T~~~~~  199 (280)
T 3tox_A          152 ----------GFAGVAPYAASKAGLIGLVQALAVELGARG--IRVNALLPGGTDTPANFA  199 (280)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTT--EEEEEEEECSBSSTTSGG
T ss_pred             ----------CCCCchhHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEEECCCCCchhhh
Confidence                      445678999999999999999999999988  999999999999998765

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=100.00  E-value=5e-39  Score=273.08  Aligned_cols=194  Identities=22%  Similarity=0.214  Sum_probs=172.9

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-------------ccchHHHHHHHHHhhCCCCceEEEEeCCC
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR-------------NMAAGKDVREAIVKEIPSAKVDAMELDVS   90 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   90 (255)
                      +.++++|++|||||++|||+++|++|+++|++|++++|             +.+.+++..+++...  +.++.++.+|++
T Consensus         6 ~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~   83 (277)
T 3tsc_A            6 AGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA--NRRIVAAVVDTR   83 (277)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTT
T ss_pred             ccccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCC
Confidence            35689999999999999999999999999999999998             455666666666654  568999999999


Q ss_pred             CHHHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEe
Q 025275           91 SLASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNV  168 (255)
Q Consensus        91 ~~~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~v  168 (255)
                      |+++++++++++.+++|++|+||||||+..  ++.+.+.++|++.+++|+.|+++++++++|+|.++    ++.|+||++
T Consensus        84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----~~~g~iv~i  159 (277)
T 3tsc_A           84 DFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEG----GRGGSIILI  159 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TSCEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc----CCCCEEEEE
Confidence            999999999999999999999999999874  34578999999999999999999999999999873    336899999


Q ss_pred             cCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          169 SSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       169 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      ||..+..               +.++...|++||+++++|+++++.|++++|  |+||+|+||+++|++.+.
T Consensus       160 sS~~~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~  214 (277)
T 3tsc_A          160 SSAAGMK---------------MQPFMIHYTASKHAVTGLARAFAAELGKHS--IRVNSVHPGPVNTPMGSG  214 (277)
T ss_dssp             CCGGGTS---------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESSBSSGGGSH
T ss_pred             ccHhhCC---------------CCCCchhhHHHHHHHHHHHHHHHHHhCccC--eEEEEEEeCCCcCCcccc
Confidence            9999876               555778999999999999999999999998  999999999999998654

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=100.00  E-value=2.3e-39  Score=270.89  Aligned_cols=192  Identities=29%  Similarity=0.362  Sum_probs=173.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .+++||++|||||++|||++++++|+++|++|++++|+.+.+++..+++     +.++.++++|++|+++++++++++.+
T Consensus         2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   76 (247)
T 3rwb_A            2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIAADISDPGSVKALFAEIQA   76 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999988877777665     55789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|+||||||...  +..+.+.++|++.+++|+.|+++++++++|+|+++    +..|+||++||..+..       
T Consensus        77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~----~~~g~iv~isS~~~~~-------  145 (247)
T 3rwb_A           77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAA----GKAGRVISIASNTFFA-------  145 (247)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TCCEEEEEECCTHHHH-------
T ss_pred             HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc----CCCcEEEEECchhhcc-------
Confidence            9999999999999864  34578999999999999999999999999999873    2368999999998876       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                              +.++...|+++|+|+++|+++++.|++++|  |+||+|+||+++|++.+...
T Consensus       146 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~vn~v~PG~v~t~~~~~~~  195 (247)
T 3rwb_A          146 --------GTPNMAAYVAAKGGVIGFTRALATELGKYN--ITANAVTPGLIESDGVKASP  195 (247)
T ss_dssp             --------TCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHTSG
T ss_pred             --------CCCCchhhHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeeCcCcCccccccC
Confidence                    555778999999999999999999999998  99999999999999876543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=100.00  E-value=3.3e-39  Score=274.40  Aligned_cols=194  Identities=27%  Similarity=0.357  Sum_probs=172.8

Q ss_pred             cccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHH
Q 025275           19 EEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        19 ~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      ..+...+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++++|++|+++++++
T Consensus        17 ~~~~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~   91 (277)
T 4dqx_A           17 NLYFQSMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-----GSKAFGVRVDVSSAKDAESM   91 (277)
T ss_dssp             -----CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHH
T ss_pred             ccccccCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHH
Confidence            3344667899999999999999999999999999999999999988877776664     55789999999999999999


Q ss_pred             HHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275           99 ASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      ++++.+++|++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|+|++     .+.|+||++||..+.. 
T Consensus        92 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~-  165 (277)
T 4dqx_A           92 VEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRR-----NGGGSIINTTSYTATS-  165 (277)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-----TTCEEEEEECCGGGTS-
T ss_pred             HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCcEEEEECchhhCc-
Confidence            9999999999999999999763  4567889999999999999999999999999986     4578999999998776 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                    +.++...|++||+|+++|+++++.|++++|  |+||+|+||+++|+++.
T Consensus       166 --------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--i~vn~v~PG~v~T~~~~  212 (277)
T 4dqx_A          166 --------------AIADRTAYVASKGAISSLTRAMAMDHAKEG--IRVNAVAPGTIDSPYFT  212 (277)
T ss_dssp             --------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHH
T ss_pred             --------------CCCCChhHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeeCcCcCchhh
Confidence                          555778999999999999999999999998  99999999999999843

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=100.00  E-value=3.4e-39  Score=272.33  Aligned_cols=192  Identities=23%  Similarity=0.298  Sum_probs=175.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ..+++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++++|++|+++++++++++.+
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (264)
T 3ucx_A            7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT--GRRALSVGTDITDDAQVAHLVDETMK   84 (264)
T ss_dssp             CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999988888776  66899999999999999999999999


Q ss_pred             CCCCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      ++|++|+||||||..   .+..+.+.++|++.+++|+.++++++++++|.|.++      +|+||++||..+..      
T Consensus        85 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~------~g~iv~isS~~~~~------  152 (264)
T 3ucx_A           85 AYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEES------KGAVVNVNSMVVRH------  152 (264)
T ss_dssp             HTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH------TCEEEEECCGGGGC------
T ss_pred             HcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc------CCEEEEECcchhcc------
Confidence            999999999999875   345678999999999999999999999999999862      48999999998776      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++...|++||+++++|+++++.|++++|  |+||+|+||+|+|++.+..
T Consensus       153 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~vn~v~PG~v~t~~~~~~  201 (264)
T 3ucx_A          153 ---------SQAKYGAYKMAKSALLAMSQTLATELGEKG--IRVNSVLPGYIWGGTLKSY  201 (264)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSCBSHHHHHH
T ss_pred             ---------CCCccHHHHHHHHHHHHHHHHHHHHhCccC--eEEEEEecCccccccHHHH
Confidence                     555778999999999999999999999988  9999999999999987643

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=100.00  E-value=3.8e-39  Score=273.92  Aligned_cols=197  Identities=21%  Similarity=0.207  Sum_probs=176.8

Q ss_pred             cccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHH
Q 025275           19 EEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        19 ~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      +.+.....++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.... +.++.++++|++|+++++++
T Consensus        17 ~~~~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~   95 (277)
T 4fc7_A           17 RHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAA   95 (277)
T ss_dssp             CCSBCTTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHH
Confidence            44445566899999999999999999999999999999999999988888888876543 55799999999999999999


Q ss_pred             HHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275           99 ASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      ++++.+++|++|+||||||...  +..+.+.++|++++++|+.++++++++++|.|.+     .+.|+||++||..+.. 
T Consensus        96 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~-  169 (277)
T 4fc7_A           96 VDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFR-----DHGGVIVNITATLGNR-  169 (277)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHH-----HHCEEEEEECCSHHHH-
T ss_pred             HHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCCEEEEECchhhCC-
Confidence            9999999999999999999763  4567899999999999999999999999999876     3468999999999876 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                                    +.++...|++||+|+++|+++++.|++++|  |+||+|+||+|+|++.
T Consensus       170 --------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--i~vn~v~PG~v~t~~~  215 (277)
T 4fc7_A          170 --------------GQALQVHAGSAKAAVDAMTRHLAVEWGPQN--IRVNSLAPGPISGTEG  215 (277)
T ss_dssp             --------------TCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBSSSHH
T ss_pred             --------------CCCCcHHHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEEECCEecchh
Confidence                          455778999999999999999999999998  9999999999999864

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=100.00  E-value=2.3e-39  Score=273.87  Aligned_cols=194  Identities=26%  Similarity=0.306  Sum_probs=168.5

Q ss_pred             ccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ..++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++++|++|++++++++++
T Consensus        20 ~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~   94 (266)
T 3grp_A           20 GSMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVFSANLSDRKSIKQLAEV   94 (266)
T ss_dssp             -CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHH
T ss_pred             cchhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEeecCCHHHHHHHHHH
Confidence            3457899999999999999999999999999999999999988877766554     55799999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.++++++|+||||||...  ++.+.+.++|++.+++|+.|+++++++++|.|.+     .+.|+||++||..+..    
T Consensus        95 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~~~g~Iv~isS~~~~~----  165 (266)
T 3grp_A           95 AEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMR-----RRYGRIINITSIVGVV----  165 (266)
T ss_dssp             HHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCC--------
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCcEEEEECCHHHcC----
Confidence            9999999999999999864  3567888999999999999999999999999987     4578999999998876    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                 +.++...|++||+|+++|+++++.|++++|  |+||+|+||+++|++.+...
T Consensus       166 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--I~vn~v~PG~v~t~~~~~~~  215 (266)
T 3grp_A          166 -----------GNPGQTNYCAAKAGLIGFSKALAQEIASRN--ITVNCIAPGFIKSAMTDKLN  215 (266)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSHHHHTCC
T ss_pred             -----------CCCCchhHHHHHHHHHHHHHHHHHHhhhhC--cEEEEEeeCcCCCchhhccC
Confidence                       445678999999999999999999999998  99999999999999877543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.1e-39  Score=272.71  Aligned_cols=190  Identities=25%  Similarity=0.305  Sum_probs=166.4

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++.+++++.+++
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA--GGTALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999999999999998888776  5689999999999999999999999999


Q ss_pred             CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          107 RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       107 g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      |++|+||||||+..  +..+.+.++|.+++++|+.|+++++++++|.|++     ++.|+||++||..+..         
T Consensus        80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-----~~~g~IV~isS~~~~~---------  145 (264)
T 3tfo_A           80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEA-----QRSGQIINIGSIGALS---------  145 (264)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTC---------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----CCCeEEEEEcCHHHcc---------
Confidence            99999999999874  4567899999999999999999999999999987     4578999999999876         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                            +.++...|++||+++++|+++++.++ + |  |+||+|+||+|+|++.+...
T Consensus       146 ------~~~~~~~Y~asKaal~~l~~~la~e~-~-g--Irvn~v~PG~v~T~~~~~~~  193 (264)
T 3tfo_A          146 ------VVPTAAVYCATKFAVRAISDGLRQES-T-N--IRVTCVNPGVVESELAGTIT  193 (264)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHC-S-S--EEEEEEEECCC---------
T ss_pred             ------cCCCChhHHHHHHHHHHHHHHHHHhC-C-C--CEEEEEecCCCcCccccccc
Confidence                  55577899999999999999999998 4 6  99999999999999976543

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=100.00  E-value=3.8e-39  Score=271.07  Aligned_cols=192  Identities=21%  Similarity=0.203  Sum_probs=172.6

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.+.  +.++.++++|++|+++++++++++.++
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF--PGQILTVQMDVRNTDDIQKMIEQIDEK   80 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS--TTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999888888887654  568999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  +..+.+.++|++.+++|+.++++++++++|+|.+.    +..|+||++||..+..        
T Consensus        81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~----~~~g~iv~isS~~~~~--------  148 (257)
T 3imf_A           81 FGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEK----GIKGNIINMVATYAWD--------  148 (257)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCCEEEEECCGGGGS--------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhh----CCCcEEEEECchhhcc--------
Confidence            999999999999763  45678999999999999999999999999999542    4578999999998776        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHh-hCCCcEEEEEeeCCceecCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLK-EDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~-~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                             +.++...|++||+|+++|+++++.|+. +.|  |+||+|+||+++|++...
T Consensus       149 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~~g--Irvn~v~PG~v~t~~~~~  197 (257)
T 3imf_A          149 -------AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYG--IRVNAIAPGPIERTGGAD  197 (257)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECCBSSCCCC-
T ss_pred             -------CCCCcHHHHHHHHHHHHHHHHHHHHhccccC--eEEEEEEECCCcCCcchh
Confidence                   455778999999999999999999997 667  999999999999997543

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=100.00  E-value=3.9e-39  Score=271.22  Aligned_cols=191  Identities=24%  Similarity=0.279  Sum_probs=174.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++|++|||||++|||++++++|+++|++|+++ +|+.+.+++..+++...  +.++.++++|++|+++++++++++.+++
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKL--GVKVLVVKANVGQPAKIKEMFQQIDETF   80 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            57999999999999999999999999999987 88888888888888765  5689999999999999999999999999


Q ss_pred             CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          107 RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       107 g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      |++|+||||||...  +..+.+.++|++.+++|+.|+++++++++|+|++     .+.|+||++||..+..         
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~-----~~~g~iv~isS~~~~~---------  146 (258)
T 3oid_A           81 GRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEK-----NGGGHIVSISSLGSIR---------  146 (258)
T ss_dssp             SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-----TTCEEEEEEEEGGGTS---------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEECchhhCC---------
Confidence            99999999999753  4567899999999999999999999999999987     5678999999998776         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                            +.++...|++||+++++|+++++.|++++|  |+||+|+||+++|++.+...
T Consensus       147 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~~~  196 (258)
T 3oid_A          147 ------YLENYTTVGVSKAALEALTRYLAVELSPKQ--IIVNAVSGGAIDTDALKHFP  196 (258)
T ss_dssp             ------BCTTCHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEEECCBCSGGGGGCT
T ss_pred             ------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcC--cEEEEEeeCCCcChhhhhcc
Confidence                  555778999999999999999999999988  99999999999999987654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=100.00  E-value=4.8e-39  Score=273.89  Aligned_cols=200  Identities=25%  Similarity=0.250  Sum_probs=169.3

Q ss_pred             cccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-ccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHH
Q 025275           19 EEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRK   97 (255)
Q Consensus        19 ~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~   97 (255)
                      .....+.++++|++|||||++|||+++|++|+++|++|++++| +.+.+++..+++.... +.++.++++|++|++++++
T Consensus        15 ~~n~~~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~   93 (281)
T 3v2h_A           15 TENLYFQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIAD   93 (281)
T ss_dssp             -------CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHH
T ss_pred             ccchhhhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHH
Confidence            3344567789999999999999999999999999999999999 5556677777776542 4579999999999999999


Q ss_pred             HHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275           98 FASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus        98 ~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      +++++.+++|++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+     ++.|+||++||..+..
T Consensus        94 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~  168 (281)
T 3v2h_A           94 MMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKK-----KGWGRIINIASAHGLV  168 (281)
T ss_dssp             HHHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS
T ss_pred             HHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCCEEEEECCccccc
Confidence            99999999999999999999864  3456899999999999999999999999999987     4568999999998876


Q ss_pred             ccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          176 AYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                     +.++...|++||+++++|+++++.|++++|  |+||+|+||+++|++.+..
T Consensus       169 ---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~t~~~~~~  217 (281)
T 3v2h_A          169 ---------------ASPFKSAYVAAKHGIMGLTKTVALEVAESG--VTVNSICPGYVLTPLVEKQ  217 (281)
T ss_dssp             ---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCC------
T ss_pred             ---------------CCCCchHHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEECCCCcCcchhhh
Confidence                           455778999999999999999999999998  9999999999999987653

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=100.00  E-value=4.6e-39  Score=271.20  Aligned_cols=202  Identities=24%  Similarity=0.306  Sum_probs=171.0

Q ss_pred             ccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHH
Q 025275           18 AEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRK   97 (255)
Q Consensus        18 ~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~   97 (255)
                      .....++.++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++.
T Consensus        18 ~~~~~~m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~   95 (262)
T 3rkr_A           18 DDDDKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA--GGEAESHACDLSHSDAIAA   95 (262)
T ss_dssp             -------CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHH
T ss_pred             CCCcchhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh--CCceeEEEecCCCHHHHHH
Confidence            33344566789999999999999999999999999999999999999998888888776  5689999999999999999


Q ss_pred             HHHHHhcCCCCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275           98 FASEYNSQGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus        98 ~~~~~~~~~g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      +++++.+.+|++|+||||||..   .+..+.+.++|.+.+++|+.|+++++++++|+|.+     .+.|+||++||..+.
T Consensus        96 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~  170 (262)
T 3rkr_A           96 FATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIA-----AKRGHIINISSLAGK  170 (262)
T ss_dssp             HHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCCEEEEECSSCSS
T ss_pred             HHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----CCCceEEEEechhhc
Confidence            9999999999999999999973   24566889999999999999999999999999987     567899999999877


Q ss_pred             cccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          175 FAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                      .               +.++...|+++|+++++|+++++.++.+.|  |++|+|+||+++|++......
T Consensus       171 ~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~~~  222 (262)
T 3rkr_A          171 N---------------PVADGAAYTASKWGLNGLMTSAAEELRQHQ--VRVSLVAPGSVRTEFGVGLSA  222 (262)
T ss_dssp             C---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCC----------
T ss_pred             C---------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEecCCCcCCccccccc
Confidence            6               555778999999999999999999999988  999999999999999765543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=100.00  E-value=1.2e-39  Score=276.94  Aligned_cols=197  Identities=24%  Similarity=0.279  Sum_probs=177.3

Q ss_pred             ccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           20 EVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        20 ~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      .+.+.++++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++.++
T Consensus        24 ~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~  101 (275)
T 4imr_A           24 RLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS--GGTAQELAGDLSEAGAGTDLI  101 (275)
T ss_dssp             SHHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT--TCCEEEEECCTTSTTHHHHHH
T ss_pred             cccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEecCCCHHHHHHHH
Confidence            334556789999999999999999999999999999999999999999998888775  668999999999999999999


Q ss_pred             HHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          100 SEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      +++.+. +++|+||||||...  +..+.+.++|++.+++|+.|+++++++++|+|++     ++.|+||++||..+..  
T Consensus       102 ~~~~~~-g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-----~~~g~Iv~isS~~~~~--  173 (275)
T 4imr_A          102 ERAEAI-APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVA-----RKWGRVVSIGSINQLR--  173 (275)
T ss_dssp             HHHHHH-SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS--
T ss_pred             HHHHHh-CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEECCHHhCC--
Confidence            999887 89999999999763  4567899999999999999999999999999987     4578999999998765  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                   +..+...|++||+|+++|+++++.+++++|  |+||+|+||+++|++....
T Consensus       174 -------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~~  222 (275)
T 4imr_A          174 -------------PKSVVTAYAATKAAQHNLIQSQARDFAGDN--VLLNTLAPGLVDTDRNADR  222 (275)
T ss_dssp             -------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESSBCSHHHHHH
T ss_pred             -------------CCCCchhhHHHHHHHHHHHHHHHHHhcccC--cEEEEEEeccccCcccccc
Confidence                         444667799999999999999999999988  9999999999999987654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=100.00  E-value=9.5e-39  Score=268.86  Aligned_cols=192  Identities=23%  Similarity=0.309  Sum_probs=172.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      +.++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++     +.++.++++|++|+++++++++++.
T Consensus         3 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~   77 (259)
T 4e6p_A            3 MKRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-----GPAAYAVQMDVTRQDSIDAAIAATV   77 (259)
T ss_dssp             -CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCCceEEEeeCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999988877777665     4468999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +++|++|+||||||...  +..+.+.++|++.+++|+.++++++++++|.|.++    +..|+||++||..+..      
T Consensus        78 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~----~~~g~iv~isS~~~~~------  147 (259)
T 4e6p_A           78 EHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQ----GRGGKIINMASQAGRR------  147 (259)
T ss_dssp             HHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TSCEEEEEECCGGGTS------
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc----CCCeEEEEECChhhcc------
Confidence            99999999999999864  45678899999999999999999999999999863    3368999999998876      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++...|++||+++++|+++++.|++++|  |+||+|+||+++|++.+..
T Consensus       148 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~vn~v~PG~v~t~~~~~~  196 (259)
T 4e6p_A          148 ---------GEALVAIYCATKAAVISLTQSAGLDLIKHR--INVNAIAPGVVDGEHWDGV  196 (259)
T ss_dssp             ---------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCSTTHHHH
T ss_pred             ---------CCCCChHHHHHHHHHHHHHHHHHHHhhhcC--CEEEEEEECCCccchhhhh
Confidence                     555778999999999999999999999998  9999999999999987653

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=100.00  E-value=1e-38  Score=270.40  Aligned_cols=189  Identities=26%  Similarity=0.296  Sum_probs=172.6

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++++++++.
T Consensus         6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~   80 (271)
T 3tzq_B            6 TAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-----GRGAVHHVVDLTNEVSVRALIDFTI   80 (271)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCCeEEEECCCCCHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999888877766     4578899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCCC----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          104 SQGRPLNILINNAGIMAS----PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~----~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +++|++|+||||||...+    ..+.+.++|++.+++|+.++++++++++|+|.+     .+.|+||++||..+..    
T Consensus        81 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-----~~~g~iv~isS~~~~~----  151 (271)
T 3tzq_B           81 DTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLIS-----AGGGAIVNISSATAHA----  151 (271)
T ss_dssp             HHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCEEEEEECCGGGTS----
T ss_pred             HHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCEEEEECCHHHcC----
Confidence            999999999999998632    346789999999999999999999999999987     5678999999998776    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                 +.++...|++||+++++|+++++.|+.++|  |+||+|+||+++|++.+
T Consensus       152 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--i~vn~v~PG~v~t~~~~  198 (271)
T 3tzq_B          152 -----------AYDMSTAYACTKAAIETLTRYVATQYGRHG--VRCNAIAPGLVRTPRLE  198 (271)
T ss_dssp             -----------BCSSCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCCTTTC
T ss_pred             -----------CCCCChHHHHHHHHHHHHHHHHHHHHhhcC--EEEEEEEeCCCcCcccc
Confidence                       555778999999999999999999999998  99999999999999876

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.4e-39  Score=271.17  Aligned_cols=197  Identities=25%  Similarity=0.221  Sum_probs=160.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++++|++|+++++++++++.
T Consensus         2 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~   76 (257)
T 3tpc_A            2 VMQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----GAAVRFRNADVTNEADATAALAFAK   76 (257)
T ss_dssp             --CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999998877766665     4478999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCCCC------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCeEEEecCCccccc
Q 025275          104 SQGRPLNILINNAGIMASP------FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQK-SSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~------~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~g~ii~vsS~~~~~~  176 (255)
                      +++|++|+||||||.....      .+.+.++|.+.+++|+.++++++++++|+|.++... .++.|+||++||..+.. 
T Consensus        77 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~-  155 (257)
T 3tpc_A           77 QEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD-  155 (257)
T ss_dssp             HHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH-
T ss_pred             HHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc-
Confidence            9999999999999987431      257789999999999999999999999999863211 12578999999999876 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                    +.++...|++||+++++|+++++.|++++|  |++|+|+||+++|++.+...
T Consensus       156 --------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~vn~v~PG~v~t~~~~~~~  205 (257)
T 3tpc_A          156 --------------GQIGQAAYAASKGGVAALTLPAARELARFG--IRVVTIAPGIFDTPMMAGMP  205 (257)
T ss_dssp             --------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBSCC------
T ss_pred             --------------CCCCCcchHHHHHHHHHHHHHHHHHHHHcC--eEEEEEEeCCCCChhhccCC
Confidence                          555778999999999999999999999998  99999999999999876543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=100.00  E-value=1.3e-38  Score=266.36  Aligned_cols=191  Identities=30%  Similarity=0.384  Sum_probs=173.3

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++...  +.++.++++|++|+++++.+++++.++
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~   81 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA--GAKVHVLELDVADRQGVDAAVASTVEA   81 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            478899999999999999999999999999999999998888888888764  557899999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  +..+.+.++|.+++++|+.|+++++++++|+|.+     .+ |+||++||..+..        
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~-g~iv~isS~~~~~--------  147 (247)
T 2jah_A           82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLR-----SK-GTVVQMSSIAGRV--------  147 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HT-CEEEEECCGGGTC--------
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----CC-CEEEEEccHHhcC--------
Confidence            999999999999763  4567889999999999999999999999999986     23 8999999998775        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                             +.++...|+++|+++++|+++++.|+.++|  |++|+|+||+++|++....
T Consensus       148 -------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~~  196 (247)
T 2jah_A          148 -------NVRNAAVYQATKFGVNAFSETLRQEVTERG--VRVVVIEPGTTDTELRGHI  196 (247)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBSSSGGGGC
T ss_pred             -------CCCCCcHHHHHHHHHHHHHHHHHHHhcccC--cEEEEEECCCCCCcchhcc
Confidence                   445678999999999999999999999988  9999999999999987654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=100.00  E-value=4.9e-39  Score=272.65  Aligned_cols=195  Identities=26%  Similarity=0.219  Sum_probs=164.9

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .+.++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++++|++|+++++++++++
T Consensus        22 ~m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~   96 (272)
T 4dyv_A           22 SMSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI-----GDDALCVPTDVTDPDSVRALFTAT   96 (272)
T ss_dssp             ------CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----TSCCEEEECCTTSHHHHHHHHHHH
T ss_pred             hhcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEecCCCHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999988887777766     357899999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          103 NSQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      .+++|++|+||||||...   +..+.+.++|++.+++|+.|+++++++++|.|.++.   .+.|+||++||..+..    
T Consensus        97 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~---~~~g~IV~isS~~~~~----  169 (272)
T 4dyv_A           97 VEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQE---PRGGRIINNGSISATS----  169 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSS---SCCEEEEEECCSSTTS----
T ss_pred             HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCC---CCCcEEEEECchhhcC----
Confidence            999999999999999863   456789999999999999999999999999998721   1268999999998876    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                 +.++...|++||+|+++|+++++.|++++|  |++|+|+||+|+|++.+...
T Consensus       170 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~~~  219 (272)
T 4dyv_A          170 -----------PRPYSAPYTATKHAITGLTKSTSLDGRVHD--IACGQIDIGNADTPMAQKMK  219 (272)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEEEECC--------
T ss_pred             -----------CCCCchHHHHHHHHHHHHHHHHHHHhCccC--EEEEEEEECcccChhhhhhc
Confidence                       555778999999999999999999999998  99999999999999987653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.5e-38  Score=268.35  Aligned_cols=211  Identities=21%  Similarity=0.243  Sum_probs=179.7

Q ss_pred             CCCCCCCcccccccCCCCCCcEEEEecCC-CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeC
Q 025275           10 SGFSASSTAEEVTQGIDGTGLTAIVTGAS-SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD   88 (255)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~k~vlItG~s-~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D   88 (255)
                      +.+.....+..+..+.++++|++|||||+ +|||++++++|+++|++|++++|+.+.+++..+++.+. ++.++.++++|
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~D   81 (266)
T 3o38_A            3 GSMNLSEAPKEIDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL-GLGRVEAVVCD   81 (266)
T ss_dssp             ---CTTSCCCCCCCCSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-CSSCEEEEECC
T ss_pred             CCcccccCccccccccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc-CCCceEEEEeC
Confidence            33444555566667788999999999998 59999999999999999999999999988888888665 24689999999


Q ss_pred             CCCHHHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEE
Q 025275           89 VSSLASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIV  166 (255)
Q Consensus        89 l~~~~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii  166 (255)
                      ++|+++++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|+|.++    +..++||
T Consensus        82 l~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~~~~iv  157 (266)
T 3o38_A           82 VTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGV----DHGGVIV  157 (266)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS----SCCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc----CCCeEEE
Confidence            99999999999999999999999999999764  34578999999999999999999999999999862    2568999


Q ss_pred             EecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          167 NVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       167 ~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      ++||..+..               +.++...|+++|+++++|+++++.++.++|  |+||+|+||+++|++.+...
T Consensus       158 ~~sS~~~~~---------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~~  216 (266)
T 3o38_A          158 NNASVLGWR---------------AQHSQSHYAAAKAGVMALTRCSAIEAVEFG--VRINAVSPSIARHKFLEKTS  216 (266)
T ss_dssp             EECCGGGTC---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCCCC-------
T ss_pred             EeCCHHHcC---------------CCCCCchHHHHHHHHHHHHHHHHHHHHHcC--cEEEEEeCCcccchhhhccC
Confidence            999998776               555778999999999999999999999988  99999999999999976543

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-39  Score=277.84  Aligned_cols=193  Identities=28%  Similarity=0.356  Sum_probs=177.5

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCC---eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGV---HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~---~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      .++++|++|||||++|||+++|++|+++|+   +|++++|+.+.++++.+++....++.++.++++|++|++++++++++
T Consensus        29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~  108 (287)
T 3rku_A           29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN  108 (287)
T ss_dssp             HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred             hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence            457899999999999999999999999998   99999999999999999988876677899999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      +.+++|++|+||||||...   +..+.+.++|++.+++|+.|+++++++++|+|++     ++.|+||++||..+..   
T Consensus       109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-----~~~g~IV~isS~~~~~---  180 (287)
T 3rku_A          109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQA-----KNSGDIVNLGSIAGRD---  180 (287)
T ss_dssp             SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCCEEEEECCGGGTS---
T ss_pred             HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCeEEEECChhhcC---
Confidence            9999999999999999753   4567899999999999999999999999999987     4578999999999876   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                  +.++...|+++|+|+++|+++++.|++++|  |+||+|+||+|+|++..
T Consensus       181 ------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--Irvn~v~PG~v~T~~~~  227 (287)
T 3rku_A          181 ------------AYPTGSIYCASKFAVGAFTDSLRKELINTK--IRVILIAPGLVETEFSL  227 (287)
T ss_dssp             ------------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSS--CEEEEEEESCEESSHHH
T ss_pred             ------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcC--CEEEEEeCCcCcCcccc
Confidence                        555778999999999999999999999988  99999999999999864

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=100.00  E-value=8.5e-39  Score=274.92  Aligned_cols=202  Identities=22%  Similarity=0.291  Sum_probs=177.8

Q ss_pred             cccccccCC-CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Q 025275           17 TAEEVTQGI-DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASV   95 (255)
Q Consensus        17 ~~~~~~~~~-~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si   95 (255)
                      ++..|...| +++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.+++
T Consensus        18 ~~~~m~~~m~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v   95 (301)
T 3tjr_A           18 GPGSMDGFLSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ--GFDAHGVVCDVRHLDEM   95 (301)
T ss_dssp             ------CCCCCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHH
T ss_pred             CCccchhHHhccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHH
Confidence            333443333 489999999999999999999999999999999999999999988888776  56899999999999999


Q ss_pred             HHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275           96 RKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus        96 ~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                      +++++++.+.+|++|+||||||+..  +..+.+.+++.+.+++|+.|+++++++++|+|.++    +..|+||++||..+
T Consensus        96 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----~~~g~iv~isS~~~  171 (301)
T 3tjr_A           96 VRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQ----GTGGHIAFTASFAG  171 (301)
T ss_dssp             HHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----CSCEEEEEECCGGG
T ss_pred             HHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc----CCCcEEEEeCchhh
Confidence            9999999999999999999999874  45578999999999999999999999999999873    23689999999998


Q ss_pred             ccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          174 RFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      ..               +.++...|++||+++++|+++++.|+.++|  |+||+|+||+++|++....
T Consensus       172 ~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~~  222 (301)
T 3tjr_A          172 LV---------------PNAGLGTYGVAKYGVVGLAETLAREVKPNG--IGVSVLCPMVVETKLVSNS  222 (301)
T ss_dssp             TS---------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEECCSCCCSSHHHHH
T ss_pred             cC---------------CCCCchHHHHHHHHHHHHHHHHHHHhcccC--cEEEEEECCcccccccccc
Confidence            76               556778999999999999999999999988  9999999999999987653

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=6e-39  Score=273.35  Aligned_cols=198  Identities=24%  Similarity=0.246  Sum_probs=167.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ..+++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.+.. +..+.++++|++|+++++++++++.
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~  106 (281)
T 4dry_A           28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT-GNIVRAVVCDVGDPDQVAALFAAVR  106 (281)
T ss_dssp             ------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999998888888887652 3345899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          104 SQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      +++|++|+||||||...   +..+.+.++|++.+++|+.|+++++++++|.|.++.   .+.|+||++||..+..     
T Consensus       107 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~---~~~g~IV~isS~~~~~-----  178 (281)
T 4dry_A          107 AEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQT---PRGGRIINNGSISAQT-----  178 (281)
T ss_dssp             HHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSS---SCCEEEEEECCGGGTC-----
T ss_pred             HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---CCCcEEEEECCHHhCC-----
Confidence            99999999999999763   456789999999999999999999999999998721   1368999999998776     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                +.++...|++||+|+++|+++++.|++++|  |+||+|+||+|+|++.+...
T Consensus       179 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~~~  228 (281)
T 4dry_A          179 ----------PRPNSAPYTATKHAITGLTKSTALDGRMHD--IACGQIDIGNAATDMTARMS  228 (281)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEEECBCC-------
T ss_pred             ----------CCCCChhHHHHHHHHHHHHHHHHHHhcccC--eEEEEEEECcCcChhhhhhc
Confidence                      555778999999999999999999999998  99999999999999987543

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=100.00  E-value=9.4e-39  Score=266.91  Aligned_cols=191  Identities=29%  Similarity=0.322  Sum_probs=171.9

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec-cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN-MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++|++|||||++|||+++|++|+++|++|+++++. .+.+++..+++...  +.++.++++|++|+++++++++++.++
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~   79 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK--GVDSFAIQANVADADEVKAMIKEVVSQ   79 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            357999999999999999999999999999998874 46677777777665  668999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  +..+.+.++|++.+++|+.|+++++++++|+|.+     .+.|+||++||..+..        
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~--------  146 (246)
T 3osu_A           80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLR-----QRSGAIINLSSVVGAV--------  146 (246)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCHHHHH--------
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCCEEEEEcchhhcC--------
Confidence            999999999999874  4567899999999999999999999999999987     4578999999998876        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                             +.++...|++||+++++|+++++.|+.++|  |++|+|+||+++|++.+..
T Consensus       147 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~vn~v~PG~v~t~~~~~~  195 (246)
T 3osu_A          147 -------GNPGQANYVATKAGVIGLTKSAARELASRG--ITVNAVAPGFIVSDMTDAL  195 (246)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBGGGCCSCS
T ss_pred             -------CCCCChHHHHHHHHHHHHHHHHHHHhcccC--eEEEEEEECCCcCCccccc
Confidence                   455778999999999999999999999998  9999999999999987654

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=100.00  E-value=6e-39  Score=266.49  Aligned_cols=187  Identities=20%  Similarity=0.200  Sum_probs=163.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++++++++.+++|
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   76 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-----GNAVIGIVADLAHHEDVDVAFAAAVEWGG   76 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTSHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999999999999999998888777766     22689999999999999999999999999


Q ss_pred             CeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          108 PLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       108 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      ++|+||||||...  +..+.+.++|++.+++|+.|+++++++++|.|++      ++++||++||..+..          
T Consensus        77 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~------~~~~iv~isS~~~~~----------  140 (235)
T 3l6e_A           77 LPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGE------RGGVLANVLSSAAQV----------  140 (235)
T ss_dssp             SCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT------TCEEEEEECCEECCS----------
T ss_pred             CCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH------cCCEEEEEeCHHhcC----------
Confidence            9999999999863  4567899999999999999999999999999975      246999999998776          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                           +.++...|++||+|+++|+++++.|++++|  |++|+|+||+++|++++...
T Consensus       141 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~~~  190 (235)
T 3l6e_A          141 -----GKANESLYCASKWGMRGFLESLRAELKDSP--LRLVNLYPSGIRSEFWDNTD  190 (235)
T ss_dssp             -----SCSSHHHHHHHHHHHHHHHHHHHHHTTTSS--EEEEEEEEEEECCCC-----
T ss_pred             -----CCCCCcHHHHHHHHHHHHHHHHHHHhhccC--CEEEEEeCCCccCcchhccC
Confidence                 555778999999999999999999999988  99999999999999977543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=100.00  E-value=2e-38  Score=264.78  Aligned_cols=194  Identities=28%  Similarity=0.366  Sum_probs=177.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++.+.  +.++.++.+|++|+++++++++++.+
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (247)
T 3lyl_A            1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK--GFKARGLVLNISDIESIQNFFAEIKA   78 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999888888888776  56899999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      +++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.+.+     .+.|+||++||..+..       
T Consensus        79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~-------  146 (247)
T 3lyl_A           79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMK-----KRWGRIISIGSVVGSA-------  146 (247)
T ss_dssp             TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCTHHHH-------
T ss_pred             HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCeEEEEEcchhhcc-------
Confidence            9999999999999874  3456889999999999999999999999999987     4568999999999876       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                              +.++...|+++|+++++|+++++.++.++|  |++|+|+||+++|++.+...
T Consensus       147 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~~  196 (247)
T 3lyl_A          147 --------GNPGQTNYCAAKAGVIGFSKSLAYEVASRN--ITVNVVAPGFIATDMTDKLT  196 (247)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCTTTTTSC
T ss_pred             --------CCCCcHHHHHHHHHHHHHHHHHHHHHHHcC--eEEEEEeeCcEecccchhcc
Confidence                    455778999999999999999999999988  99999999999999987653

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=100.00  E-value=2.4e-38  Score=265.45  Aligned_cols=193  Identities=26%  Similarity=0.288  Sum_probs=174.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCC--CCHHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV--SSLASVRKFASEY  102 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~~~~si~~~~~~~  102 (255)
                      ..+++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.+.. +.++.++.+|+  +|+++++++++++
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~   86 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET-GRQPQWFILDLLTCTSENCQQLAQRI   86 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCCceEEEEecccCCHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999888888887652 34788999999  9999999999999


Q ss_pred             hcCCCCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          103 NSQGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      .+++|++|+||||||..   .+..+.+.++|++.+++|+.|+++++++++|+|++     .+.|+||++||..+..    
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~-----~~~g~iv~isS~~~~~----  157 (252)
T 3f1l_A           87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLK-----SDAGSLVFTSSSVGRQ----  157 (252)
T ss_dssp             HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-----SSSCEEEEECCGGGTS----
T ss_pred             HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHH-----CCCCEEEEECChhhcc----
Confidence            99999999999999975   35667899999999999999999999999999987     5678999999998776    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                 +.++...|++||+++++|+++++.|+++.   |+||+|+||+++|++....
T Consensus       158 -----------~~~~~~~Y~asK~a~~~l~~~la~e~~~~---irvn~v~PG~v~t~~~~~~  205 (252)
T 3f1l_A          158 -----------GRANWGAYAASKFATEGMMQVLADEYQQR---LRVNCINPGGTRTAMRASA  205 (252)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHTTTT---CEEEEEECCSBSSHHHHHH
T ss_pred             -----------CCCCCchhHHHHHHHHHHHHHHHHHhcCC---cEEEEEecCcccCchhhhh
Confidence                       55577899999999999999999999754   9999999999999987643

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=100.00  E-value=7.9e-39  Score=271.57  Aligned_cols=196  Identities=21%  Similarity=0.256  Sum_probs=169.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-------HHHHHHHHHhhCCCCceEEEEeCCCCHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-------GKDVREAIVKEIPSAKVDAMELDVSSLASVR   96 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~   96 (255)
                      ++++++|++|||||++|||+++|++|+++|++|++++|+.+.       +++..+++...  +.++.++++|++|+++++
T Consensus         1 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~   78 (274)
T 3e03_A            1 SLTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVR   78 (274)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHH
T ss_pred             CCCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHH
Confidence            367899999999999999999999999999999999999764       56666666665  668999999999999999


Q ss_pred             HHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275           97 KFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus        97 ~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      ++++++.+++|++|+||||||+..  +..+.+.++|++++++|+.++++++++++|+|++     .+.|+||++||..+.
T Consensus        79 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-----~~~g~iv~isS~~~~  153 (274)
T 3e03_A           79 AAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQ-----APNPHILTLAPPPSL  153 (274)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTT-----SSSCEEEECCCCCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHh-----cCCceEEEECChHhc
Confidence            999999999999999999999864  4566889999999999999999999999999987     557899999998876


Q ss_pred             cccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCC-ceecCccccc
Q 025275          175 FAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPG-SIVTNLFRYN  241 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG-~v~t~~~~~~  241 (255)
                      ...             ..++...|++||+++.+|+++++.|++++|  |+||+|+|| +++|++.+..
T Consensus       154 ~~~-------------~~~~~~~Y~asKaal~~l~~~la~e~~~~g--I~vn~v~PG~~v~T~~~~~~  206 (274)
T 3e03_A          154 NPA-------------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQG--VAINALWPRTVIATDAINML  206 (274)
T ss_dssp             CHH-------------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEECSBCBCC------
T ss_pred             CCC-------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcC--EEEEEEECCcccccchhhhc
Confidence            520             023567899999999999999999999998  999999999 6999987543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=100.00  E-value=2.7e-39  Score=271.76  Aligned_cols=189  Identities=29%  Similarity=0.335  Sum_probs=170.9

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      +.+++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++++|++|+++++.+++++.
T Consensus         3 m~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (255)
T 4eso_A            3 MGNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAG   77 (255)
T ss_dssp             -CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999988877777665     4578999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.+|++|+||||||...  ++.+.+.++|++.+++|+.++++++++++|+|++       .|+||++||..+..      
T Consensus        78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-------~g~iv~isS~~~~~------  144 (255)
T 4eso_A           78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIRE-------GGSIVFTSSVADEG------  144 (255)
T ss_dssp             HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-------EEEEEEECCGGGSS------
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc-------CCEEEEECChhhcC------
Confidence            99999999999999874  4567899999999999999999999999998854       58999999999776      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++...|++||+++++|+++++.|+.++|  |+||+|+||+++|++.+..
T Consensus       145 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~~  193 (255)
T 4eso_A          145 ---------GHPGMSVYSASKAALVSFASVLAAELLPRG--IRVNSVSPGFIDTPTKGVA  193 (255)
T ss_dssp             ---------BCTTBHHHHHHHHHHHHHHHHHHHHTGGGT--CEEEEEEECSBCCSSTTCT
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHHhhhC--cEEEEEecCcccCcccccc
Confidence                     555778999999999999999999999998  9999999999999987643

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=100.00  E-value=1.3e-38  Score=269.13  Aligned_cols=194  Identities=23%  Similarity=0.281  Sum_probs=174.5

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++.+..++.++.++++|++|+++++++++++.+
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   88 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE   88 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999988888888887654456789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      ++|++|+||||||...   +..+.+.++|++++++|+.|+++++++++|.|++     .+.|+||++||..+..      
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~------  157 (267)
T 1iy8_A           89 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMRE-----QGSGMVVNTASVGGIR------  157 (267)
T ss_dssp             HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCCEEEEECCGGGTS------
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCCEEEEEcchhhcc------
Confidence            9999999999999763   3456789999999999999999999999999987     3468999999998765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|+++++|+++++.|++++|  |++|+|+||+++|++.+.
T Consensus       158 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~  205 (267)
T 1iy8_A          158 ---------GIGNQSGYAAAKHGVVGLTRNSAVEYGRYG--IRINAIAPGAIWTPMVEN  205 (267)
T ss_dssp             ---------BCSSBHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBCSHHHHH
T ss_pred             ---------CCCCCccHHHHHHHHHHHHHHHHHHHHhcC--eEEEEEEeCCCcCcchhc
Confidence                     445678999999999999999999999988  999999999999998654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=100.00  E-value=2e-38  Score=269.30  Aligned_cols=195  Identities=24%  Similarity=0.206  Sum_probs=170.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec------------cchHHHHHHHHHhhCCCCceEEEEeCCCC
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN------------MAAGKDVREAIVKEIPSAKVDAMELDVSS   91 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   91 (255)
                      ..+++||++|||||++|||+++|++|+++|++|++++|+            .+.+++..+.+...  +.++.++++|++|
T Consensus         8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~   85 (278)
T 3sx2_A            8 EGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--GSRIVARQADVRD   85 (278)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH--TCCEEEEECCTTC
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc--CCeEEEEeCCCCC
Confidence            456899999999999999999999999999999999987            55666666666665  5689999999999


Q ss_pred             HHHHHHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCC
Q 025275           92 LASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSE  171 (255)
Q Consensus        92 ~~si~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~  171 (255)
                      +++++++++++.+++|++|+||||||+....  .+.++|++++++|+.++++++++++|+|.++    +..|+||++||.
T Consensus        86 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~--~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----~~~g~iv~isS~  159 (278)
T 3sx2_A           86 RESLSAALQAGLDELGRLDIVVANAGIAPMS--AGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQ----GTGGSIVLISSS  159 (278)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEECCCCCCCS--STHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----CSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCC--CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC----CCCcEEEEEccH
Confidence            9999999999999999999999999986432  2688999999999999999999999999873    346899999999


Q ss_pred             ccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          172 AHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      .+..+..           .+.++...|++||+++++|+++++.|+.++|  |+||+|+||+|+|++..
T Consensus       160 ~~~~~~~-----------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~vn~v~PG~v~T~~~~  214 (278)
T 3sx2_A          160 AGLAGVG-----------SADPGSVGYVAAKHGVVGLMRVYANLLAGQM--IRVNSIHPSGVETPMIN  214 (278)
T ss_dssp             GGTSCCC-----------CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCBSSTTTS
T ss_pred             HhcCCCc-----------cCCCCchHhHHHHHHHHHHHHHHHHHHhccC--cEEEEEecCCccCccch
Confidence            8876321           0224567899999999999999999999998  99999999999999875

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=100.00  E-value=3e-38  Score=265.85  Aligned_cols=194  Identities=29%  Similarity=0.308  Sum_probs=174.8

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++...  +.++.++++|++|+++++++++++
T Consensus         3 ~~~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~   80 (260)
T 2ae2_A            3 GRWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTV   80 (260)
T ss_dssp             CTTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999998888888887665  557899999999999999999999


Q ss_pred             hcCC-CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          103 NSQG-RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       103 ~~~~-g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      .+++ +++|+||||||...  +..+.+.++|.+++++|+.++++++++++|+|++     .+.|+||++||..+..    
T Consensus        81 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~----  151 (260)
T 2ae2_A           81 ANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKA-----SERGNVVFISSVSGAL----  151 (260)
T ss_dssp             HHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TSSEEEEEECCGGGTS----
T ss_pred             HHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEEcchhhcc----
Confidence            9999 89999999999763  3456889999999999999999999999999987     4568999999988765    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                 +.++...|++||+++++++++++.|+.++|  |++|+|+||+++|++.+.
T Consensus       152 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  199 (260)
T 2ae2_A          152 -----------AVPYEAVYGATKGAMDQLTRCLAFEWAKDN--IRVNGVGPGVIATSLVEM  199 (260)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEEECSBCSHHHHH
T ss_pred             -----------CCCCcchHHHHHHHHHHHHHHHHHHHhhcC--cEEEEEecCCCCCcchhh
Confidence                       445678999999999999999999999988  999999999999998654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=100.00  E-value=3.2e-38  Score=273.49  Aligned_cols=202  Identities=25%  Similarity=0.265  Sum_probs=173.9

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      +.++++|++|||||+||||+++|++|+++|++|++++|+.+++++..+++.....+.++.++.+|++|+++++.+++++.
T Consensus         3 m~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   82 (319)
T 3ioy_A            3 LKDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE   82 (319)
T ss_dssp             CCCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999888876444489999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCeEEEecCCccccccccC
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQ-KSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      +.+|++|+||||||+..  ++.+.+.+++.+++++|+.|+++++++++|.+.++.. ...+.|+||++||.++..     
T Consensus        83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~-----  157 (319)
T 3ioy_A           83 ARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFL-----  157 (319)
T ss_dssp             HHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTC-----
T ss_pred             HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccccccc-----
Confidence            99999999999999763  4567889999999999999999999999999986311 113578999999999876     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                +.++...|++||+|+++|+++++.++.+.|  |++++|+||+|+|++.....
T Consensus       158 ----------~~~~~~~Y~aSKaal~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~~~  207 (319)
T 3ioy_A          158 ----------AAGSPGIYNTTKFAVRGLSESLHYSLLKYE--IGVSVLCPGLVKSYIYASDD  207 (319)
T ss_dssp             ----------CCSSSHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEECCCCBC--------
T ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHHHHhhhcC--CEEEEEEcCeEccCcccccc
Confidence                      455678999999999999999999999888  99999999999999877543

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.3e-38  Score=269.95  Aligned_cols=201  Identities=27%  Similarity=0.326  Sum_probs=175.5

Q ss_pred             CcccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Q 025275           16 STAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDAMELDVSSLAS   94 (255)
Q Consensus        16 ~~~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s   94 (255)
                      ...+.|+..+++++|++|||||++|||+++|++|+++|++|++++++. +.+++..+++.+.  +.++.++++|++|+++
T Consensus        18 ~~~~~mm~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~   95 (271)
T 3v2g_A           18 LYFQSMMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA--GGRAVAIRADNRDAEA   95 (271)
T ss_dssp             --CHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             cchhhhccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHH
Confidence            344556677889999999999999999999999999999999997664 5567777777665  5689999999999999


Q ss_pred             HHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           95 VRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        95 i~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ++++++++.+++|++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|++       .|+||++||..
T Consensus        96 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~-------~g~iv~isS~~  168 (271)
T 3v2g_A           96 IEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGD-------GGRIITIGSNL  168 (271)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT-------TCEEEEECCGG
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc-------CCEEEEEeChh
Confidence            99999999999999999999999864  4567899999999999999999999999999853       68999999977


Q ss_pred             cccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          173 HRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      +...              +.++...|+++|+++++|+++++.|++++|  |+||+|+||+|+|++....
T Consensus       169 ~~~~--------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--Irvn~v~PG~v~T~~~~~~  221 (271)
T 3v2g_A          169 AELV--------------PWPGISLYSASKAALAGLTKGLARDLGPRG--ITVNIVHPGSTDTDMNPAD  221 (271)
T ss_dssp             GTCC--------------CSTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBCSSSSCSS
T ss_pred             hccC--------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhC--eEEEEEecCCCcCCccccc
Confidence            6542              345778999999999999999999999998  9999999999999987643

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=2.5e-38  Score=273.89  Aligned_cols=193  Identities=23%  Similarity=0.253  Sum_probs=172.0

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec------------cchHHHHHHHHHhhCCCCceEEEEeCCCC
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN------------MAAGKDVREAIVKEIPSAKVDAMELDVSS   91 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   91 (255)
                      +.+++||++|||||++|||+++|++|+++|++|++++|+            .+.+++..+++...  +.++.++++|++|
T Consensus        41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d  118 (317)
T 3oec_A           41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRRIIARQADVRD  118 (317)
T ss_dssp             -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTC
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCC
Confidence            456899999999999999999999999999999999886            45566666666554  6689999999999


Q ss_pred             HHHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEec
Q 025275           92 LASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVS  169 (255)
Q Consensus        92 ~~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vs  169 (255)
                      +++++++++++.+++|++|+||||||+..  ++.+.+.++|++.+++|+.|+++++++++|.|.++    +..|+||++|
T Consensus       119 ~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~----~~~g~Iv~is  194 (317)
T 3oec_A          119 LASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIER----GQGGSVIFVS  194 (317)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT----CSCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc----CCCCEEEEEC
Confidence            99999999999999999999999999874  45678999999999999999999999999999872    2368999999


Q ss_pred             CCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          170 SEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       170 S~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      |..+..               +.++...|++||+|+++|+++++.|++++|  |+||+|+||+|+|++..
T Consensus       195 S~~~~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~  247 (317)
T 3oec_A          195 STVGLR---------------GAPGQSHYAASKHGVQGLMLSLANEVGRHN--IRVNSVNPGAVNTEMAL  247 (317)
T ss_dssp             CGGGSS---------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBSSHHHH
T ss_pred             cHHhcC---------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcC--eEEEEEecCcccCcccc
Confidence            999876               555778999999999999999999999998  99999999999999864

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=100.00  E-value=1.5e-38  Score=269.30  Aligned_cols=193  Identities=24%  Similarity=0.326  Sum_probs=171.3

Q ss_pred             ccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec-cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN-MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      ....++++|++|||||++|||+++|++|+++|++|++++++ .+.+++..+++...  +.++.++++|++|+++++++++
T Consensus        11 ~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~   88 (270)
T 3is3_A           11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL--GSDAIAIKADIRQVPEIVKLFD   88 (270)
T ss_dssp             CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHH
T ss_pred             cCCCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHH
Confidence            44567899999999999999999999999999999998765 44567777777665  5689999999999999999999


Q ss_pred             HHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc-cccc
Q 025275          101 EYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH-RFAY  177 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~-~~~~  177 (255)
                      ++.+++|++|+||||||+..  ++.+.+.++|++.+++|+.|+++++++++|+|++       .|+||++||..+ ..  
T Consensus        89 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-------~g~iv~isS~~~~~~--  159 (270)
T 3is3_A           89 QAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTE-------GGRIVLTSSNTSKDF--  159 (270)
T ss_dssp             HHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT-------TCEEEEECCTTTTTC--
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc-------CCeEEEEeCchhccC--
Confidence            99999999999999999864  4567899999999999999999999999999964       689999999873 33  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                   +.++...|++||+++++|+++++.|++++|  |+||+|+||+++|++.+.
T Consensus       160 -------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~  207 (270)
T 3is3_A          160 -------------SVPKHSLYSGSKGAVDSFVRIFSKDCGDKK--ITVNAVAPGGTVTDMFHE  207 (270)
T ss_dssp             -------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBCSTTHHH
T ss_pred             -------------CCCCCchhHHHHHHHHHHHHHHHHHhcccC--eEEEEEEeCCccChhhhh
Confidence                         445778999999999999999999999998  999999999999999763

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=100.00  E-value=2.4e-38  Score=267.61  Aligned_cols=192  Identities=25%  Similarity=0.367  Sum_probs=173.3

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +.+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++....++..+.++.+|+++++++++++++ 
T Consensus         4 m~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~-   82 (267)
T 3t4x_A            4 MHMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK-   82 (267)
T ss_dssp             CCCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH-
T ss_pred             cccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh-
Confidence            3467899999999999999999999999999999999999999999999998876667889999999999998877754 


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                         ++++|+||||||...  +..+.+.++|++.+++|+.++++++++++|+|.+     .+.|+||++||..+..     
T Consensus        83 ---~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~-----  149 (267)
T 3t4x_A           83 ---YPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIE-----RKEGRVIFIASEAAIM-----  149 (267)
T ss_dssp             ---CCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTEEEEEEECCGGGTS-----
T ss_pred             ---cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----CCCCEEEEEcchhhcc-----
Confidence               689999999999874  3557889999999999999999999999999987     4578999999999876     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +.++...|++||+|+++|+++++.|+.++|  |+||+|+||+++|++.+.
T Consensus       150 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--i~vn~v~PG~v~t~~~~~  197 (267)
T 3t4x_A          150 ----------PSQEMAHYSATKTMQLSLSRSLAELTTGTN--VTVNTIMPGSTLTEGVET  197 (267)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSE--EEEEEEEECCBCCHHHHH
T ss_pred             ----------CCCcchHHHHHHHHHHHHHHHHHHHhCCCC--eEEEEEeCCeecCccHHH
Confidence                      555778999999999999999999999988  999999999999997653

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=100.00  E-value=1.2e-38  Score=271.25  Aligned_cols=190  Identities=29%  Similarity=0.336  Sum_probs=171.4

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++.+++++.+++
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA--GHDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999999999999888888765  6689999999999999999999999999


Q ss_pred             CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          107 RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLD--TMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       107 g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      |++|+||||||...  +..+.+.++|++.+++|+.|+++++++++|  .|.+     .+.|+||++||..+..       
T Consensus       100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-----~~~g~iV~isS~~~~~-------  167 (279)
T 3sju_A          100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMRE-----AGWGRIVNIASTGGKQ-------  167 (279)
T ss_dssp             CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHH-----HTCEEEEEECCGGGTS-------
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhh-----cCCcEEEEECChhhcc-------
Confidence            99999999999864  356788999999999999999999999999  4665     3468999999998876       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|++||+|+++|+++++.|++++|  |+||+|+||+|+|++.+.
T Consensus       168 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~  215 (279)
T 3sju_A          168 --------GVMYAAPYTASKHGVVGFTKSVGFELAKTG--ITVNAVCPGYVETPMAER  215 (279)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEEESSBCSHHHHH
T ss_pred             --------CCCCChhHHHHHHHHHHHHHHHHHHHHhhC--cEEEEEeeCcccchHHHH
Confidence                    555778999999999999999999999998  999999999999998765

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=100.00  E-value=6e-38  Score=265.95  Aligned_cols=193  Identities=29%  Similarity=0.305  Sum_probs=170.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++.+++++.
T Consensus        16 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   93 (273)
T 1ae1_A           16 RWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVA   93 (273)
T ss_dssp             CCCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999998888888887665  5578999999999999999999999


Q ss_pred             cCC-CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          104 SQG-RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       104 ~~~-g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      +.+ +++|+||||||...  +..+.+.++|.+.+++|+.++++++++++|+|++     .+.|+||++||..+..     
T Consensus        94 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~-----~~~g~iv~isS~~~~~-----  163 (273)
T 1ae1_A           94 HVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKA-----SQNGNVIFLSSIAGFS-----  163 (273)
T ss_dssp             HHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTSEEEEEECCGGGTS-----
T ss_pred             HHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEEcCHhhcC-----
Confidence            999 99999999999763  4567889999999999999999999999999986     3468999999998775     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +.++...|+++|+++++|+++++.|++++|  |++|+|+||+++|++.+.
T Consensus       164 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  211 (273)
T 1ae1_A          164 ----------ALPSVSLYSASKGAINQMTKSLACEWAKDN--IRVNSVAPGVILTPLVET  211 (273)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBC------
T ss_pred             ----------CCCCcchhHHHHHHHHHHHHHHHHHHhhcC--cEEEEEEeCCCcCchhhh
Confidence                      445678999999999999999999999988  999999999999998654

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.4e-38  Score=270.85  Aligned_cols=198  Identities=24%  Similarity=0.269  Sum_probs=164.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-ccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +.++++|++|||||++|||+++|++|+++|++|++++| +.+.+++..+++...  +.++.++++|++|+++++++++++
T Consensus        24 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~  101 (280)
T 4da9_A           24 MTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL--GARVIFLRADLADLSSHQATVDAV  101 (280)
T ss_dssp             CSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT--TCCEEEEECCTTSGGGHHHHHHHH
T ss_pred             hhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHH
Confidence            35688999999999999999999999999999999995 666777777877765  568999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCC----CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          103 NSQGRPLNILINNAGIM----ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      .+++|++|+||||||+.    .++.+.+.++|++.+++|+.|+++++++++|.|.++..  +..|+||++||..+..   
T Consensus       102 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--~~~g~Iv~isS~~~~~---  176 (280)
T 4da9_A          102 VAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDA--RASRSIINITSVSAVM---  176 (280)
T ss_dssp             HHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEECCC-------
T ss_pred             HHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCC--CCCCEEEEEcchhhcc---
Confidence            99999999999999983    34567899999999999999999999999999987421  2368999999999876   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                  +.++...|++||+|+++|+++++.|++++|  |+||+|+||+++|++.+...
T Consensus       177 ------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~~~  226 (280)
T 4da9_A          177 ------------TSPERLDYCMSKAGLAAFSQGLALRLAETG--IAVFEVRPGIIRSDMTAAVS  226 (280)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHHHHHHHHTTTT--EEEEEEEECCBCC-------
T ss_pred             ------------CCCCccHHHHHHHHHHHHHHHHHHHHHHhC--cEEEEEeecCCcCCchhhcc
Confidence                        455678999999999999999999999988  99999999999999977543

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=1.5e-38  Score=271.42  Aligned_cols=194  Identities=20%  Similarity=0.244  Sum_probs=172.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc-------hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-------AGKDVREAIVKEIPSAKVDAMELDVSSLASVR   96 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~   96 (255)
                      .|++++|++|||||++|||+++|++|+++|++|++++|+.+       .+++..+++...  +.++.++++|++|+++++
T Consensus         4 ~m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~   81 (285)
T 3sc4_A            4 SMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIVGDIRDGDAVA   81 (285)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEECCTTSHHHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHH
Confidence            46789999999999999999999999999999999999987       466777777766  668999999999999999


Q ss_pred             HHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275           97 KFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus        97 ~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      ++++++.+++|++|+||||||+..  +..+.+.++|++++++|+.++++++++++|+|++     ++.|+||++||..+.
T Consensus        82 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-----~~~g~iv~isS~~~~  156 (285)
T 3sc4_A           82 AAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKG-----RDNPHILTLSPPIRL  156 (285)
T ss_dssp             HHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTT-----SSSCEEEECCCCCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCcEEEEECChhhc
Confidence            999999999999999999999874  4567899999999999999999999999999986     457899999998876


Q ss_pred             cccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCC-ceecCcccc
Q 025275          175 FAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPG-SIVTNLFRY  240 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG-~v~t~~~~~  240 (255)
                      ..              ..++...|++||+|+++|+++++.|++++|  |+||+|+|| .++|++.+.
T Consensus       157 ~~--------------~~~~~~~Y~asKaal~~~~~~la~e~~~~g--I~vn~v~PG~~v~t~~~~~  207 (285)
T 3sc4_A          157 EP--------------KWLRPTPYMMAKYGMTLCALGIAEELRDAG--IASNTLWPRTTVATAAVQN  207 (285)
T ss_dssp             SG--------------GGSCSHHHHHHHHHHHHHHHHHHHHTGGGT--CEEEEEECSSCBCCHHHHH
T ss_pred             cC--------------CCCCCchHHHHHHHHHHHHHHHHHHhcccC--cEEEEEeCCCccccHHHHh
Confidence            52              114568899999999999999999999998  999999999 799998764

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=100.00  E-value=4.8e-38  Score=266.68  Aligned_cols=197  Identities=29%  Similarity=0.340  Sum_probs=170.8

Q ss_pred             cccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHH
Q 025275           19 EEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        19 ~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      ..|...++++||++|||||++|||+++|++|+++|++|++++|+ +.+++..+++...  +.++.++.+|++|+++++.+
T Consensus        21 ~~m~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~   97 (273)
T 3uf0_A           21 QSMTGPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADG--GGSAEAVVADLADLEGAANV   97 (273)
T ss_dssp             ----CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHTT--TCEEEEEECCTTCHHHHHHH
T ss_pred             hhcccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHH
Confidence            34556678999999999999999999999999999999999965 5667777777654  56899999999999999999


Q ss_pred             HHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275           99 ASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      .+. .++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+     .+.|+||++||..+.. 
T Consensus        98 ~~~-~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-----~~~g~IV~isS~~~~~-  170 (273)
T 3uf0_A           98 AEE-LAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLA-----HGSGRIVTIASMLSFQ-  170 (273)
T ss_dssp             HHH-HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS-
T ss_pred             HHH-HHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCEEEEEcchHhcC-
Confidence            554 455689999999999874  4567899999999999999999999999999987     3568999999999876 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                    +.++...|+++|+|+++|+++++.|++++|  |+||+|+||+++|++....
T Consensus       171 --------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~~  219 (273)
T 3uf0_A          171 --------------GGRNVAAYAASKHAVVGLTRALASEWAGRG--VGVNALAPGYVVTANTAAL  219 (273)
T ss_dssp             --------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSGGGHHH
T ss_pred             --------------CCCCChhHHHHHHHHHHHHHHHHHHHhhcC--cEEEEEEeCCCcCCchhhc
Confidence                          555778999999999999999999999998  9999999999999987654

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=100.00  E-value=4.5e-38  Score=265.98  Aligned_cols=198  Identities=25%  Similarity=0.337  Sum_probs=172.5

Q ss_pred             ccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           20 EVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        20 ~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      .+.+..++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++.... +.++.++.+|++|+++++.++
T Consensus        12 ~~~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~   90 (267)
T 1vl8_A           12 HMKEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLL   90 (267)
T ss_dssp             -----CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHH
Confidence            3445567889999999999999999999999999999999999888888777773222 457889999999999999999


Q ss_pred             HHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc-cccc
Q 025275          100 SEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA-HRFA  176 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~-~~~~  176 (255)
                      +++.+++|++|+||||||+..  +..+.+.++|++++++|+.|+++++++++|+|++     .+.|+||++||.. +.. 
T Consensus        91 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-----~~~g~iv~isS~~~~~~-  164 (267)
T 1vl8_A           91 EAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRE-----SDNPSIINIGSLTVEEV-  164 (267)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-----CSSCEEEEECCGGGTCC-
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCcEEEEECCcchhcc-
Confidence            999999999999999999764  3456889999999999999999999999999976     4568999999987 654 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                    +.++...|+++|+++++|+++++.|+.+.|  |++|+|+||+++|++.+.
T Consensus       165 --------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~  212 (267)
T 1vl8_A          165 --------------TMPNISAYAASKGGVASLTKALAKEWGRYG--IRVNVIAPGWYRTKMTEA  212 (267)
T ss_dssp             --------------CSSSCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCBCSTTTHH
T ss_pred             --------------CCCCChhHHHHHHHHHHHHHHHHHHhcccC--eEEEEEEeccCccccccc
Confidence                          445678999999999999999999999988  999999999999998764

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=100.00  E-value=3.8e-38  Score=270.38  Aligned_cols=203  Identities=24%  Similarity=0.292  Sum_probs=172.5

Q ss_pred             CCCcccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCC---ceEEEEeCCC
Q 025275           14 ASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA---KVDAMELDVS   90 (255)
Q Consensus        14 ~~~~~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~   90 (255)
                      +++....+..++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.   ++.++.+|++
T Consensus        11 ~~~~~~~~~~m~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~~Dv~   88 (297)
T 1xhl_A           11 SSGLVPRGSHMARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKA--GVPAEKINAVVADVT   88 (297)
T ss_dssp             ------------CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCGGGEEEEECCTT
T ss_pred             cCCcccccccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCCCceEEEEecCCC
Confidence            445555566667899999999999999999999999999999999999998888888887664  33   7899999999


Q ss_pred             CHHHHHHHHHHHhcCCCCeeEEEEccCCCC--C--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEE
Q 025275           91 SLASVRKFASEYNSQGRPLNILINNAGIMA--S--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIV  166 (255)
Q Consensus        91 ~~~si~~~~~~~~~~~g~id~lv~~ag~~~--~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii  166 (255)
                      |+++++++++++.+++|++|+||||||...  +  ..+.+.++|.+++++|+.++++++++++|.|.+     .+ |+||
T Consensus        89 d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~~-g~IV  162 (297)
T 1xhl_A           89 EASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-----TK-GEIV  162 (297)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TT-CEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHh-----cC-CEEE
Confidence            999999999999999999999999999763  2  456789999999999999999999999999986     33 8999


Q ss_pred             EecCCccccccccCccCCCCCcccCC-CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          167 NVSSEAHRFAYSEGIRFDKINDESAY-NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       167 ~vsS~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      ++||..+..               +. ++...|+++|+++++|+++++.|+++.|  |++|+|+||+++|++.+..
T Consensus       163 ~isS~~~~~---------------~~~~~~~~Y~asKaa~~~l~~~la~el~~~g--I~v~~v~PG~v~T~~~~~~  221 (297)
T 1xhl_A          163 NVSSIVAGP---------------QAHSGYPYYACAKAALDQYTRCTAIDLIQHG--VRVNSVSPGAVATGFMGAM  221 (297)
T ss_dssp             EECCGGGSS---------------SCCTTSHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCBCSSHHHHT
T ss_pred             EEcCchhcc---------------CCCCCcchHHHHHHHHHHHHHHHHHHhcccC--eEEEEEeeCCCcCcccccc
Confidence            999988765               33 4678999999999999999999999988  9999999999999987654

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=100.00  E-value=3.1e-38  Score=266.10  Aligned_cols=192  Identities=26%  Similarity=0.249  Sum_probs=173.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++...  +.++.++++|++|+++++.+++++.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (262)
T 1zem_A            3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVR   80 (262)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999988888888777654  55789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      .+|++|+||||||..   .+..+.+.++|.+.+++|+.++++++++++|+|.+     .+.|+||++||..+..      
T Consensus        81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~------  149 (262)
T 1zem_A           81 DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMIT-----QNYGRIVNTASMAGVK------  149 (262)
T ss_dssp             HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCHHHHS------
T ss_pred             HhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEEcchhhcc------
Confidence            999999999999975   24567889999999999999999999999999987     3468999999998776      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|+++.+|+++++.|+.++|  |++|+|+||+++|++...
T Consensus       150 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~vn~v~PG~v~t~~~~~  197 (262)
T 1zem_A          150 ---------GPPNMAAYGTSKGAIIALTETAALDLAPYN--IRVNAISPGYMGPGFMWE  197 (262)
T ss_dssp             ---------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSSHHHH
T ss_pred             ---------CCCCCchHHHHHHHHHHHHHHHHHHHHhhC--eEEEEEecCCcCcchhhh
Confidence                     445678999999999999999999999988  999999999999998754

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=4.7e-38  Score=267.11  Aligned_cols=204  Identities=27%  Similarity=0.322  Sum_probs=173.5

Q ss_pred             CcccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Q 025275           16 STAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASV   95 (255)
Q Consensus        16 ~~~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si   95 (255)
                      +....+...+++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++...  + ++.++++|++|++++
T Consensus        16 ~~~~~~~~~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~-~~~~~~~Dv~d~~~v   92 (276)
T 2b4q_A           16 PRGSHMHPYFSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY--G-DCQAIPADLSSEAGA   92 (276)
T ss_dssp             -----CCTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTS--S-CEEECCCCTTSHHHH
T ss_pred             ccccccccccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--C-ceEEEEeeCCCHHHH
Confidence            3344555667889999999999999999999999999999999999988887777776542  3 788999999999999


Q ss_pred             HHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275           96 RKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus        96 ~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                      +++++++.+.++++|+||||||...  +..+.+.++|++.+++|+.++++++++++|.|+++.. ....|+||++||..+
T Consensus        93 ~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-~~~~g~iV~isS~~~  171 (276)
T 2b4q_A           93 RRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSAS-AENPARVINIGSVAG  171 (276)
T ss_dssp             HHHHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC-SSSCEEEEEECCGGG
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccC-CCCCCEEEEECCHHH
Confidence            9999999999999999999999764  4567888999999999999999999999999986311 012389999999987


Q ss_pred             ccccccCccCCCCCcccCCCCcc-chHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          174 RFAYSEGIRFDKINDESAYNSFG-AYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~-~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      ..               +.+... .|+++|+++++|+++++.|+.+.|  |++|+|+||+++|++.+.
T Consensus       172 ~~---------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~  222 (276)
T 2b4q_A          172 IS---------------AMGEQAYAYGPSKAALHQLSRMLAKELVGEH--INVNVIAPGRFPSRMTRH  222 (276)
T ss_dssp             TC---------------CCCCSCTTHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCCCSTTTHH
T ss_pred             cC---------------CCCCCccccHHHHHHHHHHHHHHHHHhcccC--eEEEEEEeccCcCcchhh
Confidence            65               333456 899999999999999999999888  999999999999998654

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.4e-38  Score=269.18  Aligned_cols=192  Identities=31%  Similarity=0.382  Sum_probs=162.6

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEE-eccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV-RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ..|.+++|++|||||++|||+++|++|+++|++|++++ |+.+.+++..+++...  +.++.++++|++|++++++++++
T Consensus        21 ~~m~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~   98 (267)
T 3u5t_A           21 QSMMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAA--GGKALTAQADVSDPAAVRRLFAT   98 (267)
T ss_dssp             ------CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             cccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHH
Confidence            34557899999999999999999999999999999885 5555667777777665  56899999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.+++|++|+||||||+..  ++.+.+.++|++.+++|+.|+++++++++|.|++       .|+||++||..+..    
T Consensus        99 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-------~g~iv~isS~~~~~----  167 (267)
T 3u5t_A           99 AEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRV-------GGRIINMSTSQVGL----  167 (267)
T ss_dssp             HHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE-------EEEEEEECCTHHHH----
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CCeEEEEeChhhcc----
Confidence            9999999999999999874  4567889999999999999999999999999854       58999999998776    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                 +.++...|++||+|+++|+++++.|++++|  |+||+|+||+++|++...
T Consensus       168 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~  215 (267)
T 3u5t_A          168 -----------LHPSYGIYAAAKAGVEAMTHVLSKELRGRD--ITVNAVAPGPTATDLFLE  215 (267)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSC--CEEEEEEECCBC------
T ss_pred             -----------CCCCchHHHHHHHHHHHHHHHHHHHhhhhC--CEEEEEEECCCcCccccc
Confidence                       455778999999999999999999999988  999999999999998754

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=100.00  E-value=4.7e-38  Score=262.60  Aligned_cols=191  Identities=30%  Similarity=0.349  Sum_probs=171.5

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-ccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++|++|||||++|||++++++|+++|++|++++| +.+.+++..+++...  +.++.++++|++|+++++++++++.++
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL--GSDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999 777777777777664  557899999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  +..+.+.++|++++++|+.++++++++++|+|.+     .+.|+||++||..+..        
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~--------  146 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMR-----QRHGRIVNIASVVGVT--------  146 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCTHHHH--------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCcEEEEECCHHhcC--------
Confidence            999999999999764  3456889999999999999999999999999986     3468999999998776        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                             +.++...|+++|+++++|+++++.|+.++|  |++|+|+||+++|++.+..
T Consensus       147 -------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~~  195 (246)
T 2uvd_A          147 -------GNPGQANYVAAKAGVIGLTKTSAKELASRN--ITVNAIAPGFIATDMTDVL  195 (246)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBGGGCSSCC
T ss_pred             -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEEeccccCcchhhc
Confidence                   444678999999999999999999999988  9999999999999987653

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=100.00  E-value=4.1e-38  Score=266.12  Aligned_cols=189  Identities=22%  Similarity=0.300  Sum_probs=166.2

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ..++++|++|||||++|||+++|++|+++|++|++++|+.+.+++.        ...++.++++|++|+++++.+++++.
T Consensus        11 ~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~--------~~~~~~~~~~Dv~d~~~v~~~~~~~~   82 (266)
T 3p19_A           11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKAL--------NLPNTLCAQVDVTDKYTFDTAITRAE   82 (266)
T ss_dssp             ----CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTT--------CCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHh--------hcCCceEEEecCCCHHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999987654322        13368899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.+|++|+||||||...  +..+.+.++|++++++|+.|+++++++++|.|++     .+.|+||++||..+..      
T Consensus        83 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-----~~~g~IV~isS~~~~~------  151 (266)
T 3p19_A           83 KIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKA-----RNCGTIINISSIAGKK------  151 (266)
T ss_dssp             HHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCCEEEEECCGGGTS------
T ss_pred             HHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEEcChhhCC------
Confidence            99999999999999863  4567889999999999999999999999999987     4578999999999876      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                               +.++...|++||+++++|+++++.|++++|  |+||+|+||+|+|++.....
T Consensus       152 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~~~  201 (266)
T 3p19_A          152 ---------TFPDHAAYCGTKFAVHAISENVREEVAASN--VRVMTIAPSAVKTELLSHTT  201 (266)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBSSSGGGGCS
T ss_pred             ---------CCCCCchHHHHHHHHHHHHHHHHHHhcccC--cEEEEEeeCccccchhhccc
Confidence                     555778999999999999999999999998  99999999999999987654

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=100.00  E-value=6.2e-38  Score=264.21  Aligned_cols=195  Identities=18%  Similarity=0.164  Sum_probs=159.2

Q ss_pred             CCcccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Q 025275           15 SSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLAS   94 (255)
Q Consensus        15 ~~~~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s   94 (255)
                      .+..+..+.+|++++|++|||||++|||+++|++|+++|++|++++|+.+.+.+..+   ..    .+.++.+|++|+++
T Consensus        13 ~~~~~~~~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~----~~~~~~~Dv~~~~~   85 (260)
T 3gem_A           13 GRENLYFQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELR---QA----GAVALYGDFSCETG   85 (260)
T ss_dssp             --------------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHH---HH----TCEEEECCTTSHHH
T ss_pred             cccCcccccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---hc----CCeEEECCCCCHHH
Confidence            334444456688999999999999999999999999999999999999876543333   22    37899999999999


Q ss_pred             HHHHHHHHhcCCCCeeEEEEccCCCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275           95 VRKFASEYNSQGRPLNILINNAGIMAS-PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus        95 i~~~~~~~~~~~g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                      ++++++++.+++|++|+||||||.... ..+.+.++|.+.+++|+.|+++++++++|+|.+     .+.|+||++||..+
T Consensus        86 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~-----~~~g~iv~isS~~~  160 (260)
T 3gem_A           86 IMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTA-----SEVADIVHISDDVT  160 (260)
T ss_dssp             HHHHHHHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHT-----SSSCEEEEECCGGG
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCcEEEEECChhh
Confidence            999999999999999999999997643 356678899999999999999999999999987     45689999999988


Q ss_pred             ccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          174 RFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      ..               +.++...|++||+|+++|+++++.|+++ +  |+||+|+||+++|++..
T Consensus       161 ~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~-~--Irvn~v~PG~v~t~~~~  208 (260)
T 3gem_A          161 RK---------------GSSKHIAYCATKAGLESLTLSFAARFAP-L--VKVNGIAPALLMFQPKD  208 (260)
T ss_dssp             GT---------------CCSSCHHHHHHHHHHHHHHHHHHHHHTT-T--CEEEEEEECTTCC----
T ss_pred             cC---------------CCCCcHhHHHHHHHHHHHHHHHHHHHCC-C--CEEEEEeecccccCCCC
Confidence            76               5557789999999999999999999987 6  99999999999998754

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=100.00  E-value=4.6e-38  Score=269.73  Aligned_cols=198  Identities=16%  Similarity=0.153  Sum_probs=171.1

Q ss_pred             cccccccCCCCCCcEEEEecCCC--chHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Q 025275           17 TAEEVTQGIDGTGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLAS   94 (255)
Q Consensus        17 ~~~~~~~~~~~~~k~vlItG~s~--giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s   94 (255)
                      .+..|..++++++|++|||||+|  |||+++|++|+++|++|++++|+.+..+.. +++.+..  ..+.++++|++|+++
T Consensus        18 gp~sm~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~-~~~~~~~--~~~~~~~~Dv~d~~~   94 (296)
T 3k31_A           18 GPGSMRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRV-DPLAESL--GVKLTVPCDVSDAES   94 (296)
T ss_dssp             ---CCCCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHHHHH--TCCEEEECCTTCHHH
T ss_pred             CCccccchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHH-HHHHHhc--CCeEEEEcCCCCHHH
Confidence            34456677889999999999997  999999999999999999999997654444 3333332  246899999999999


Q ss_pred             HHHHHHHHhcCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEe
Q 025275           95 VRKFASEYNSQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNV  168 (255)
Q Consensus        95 i~~~~~~~~~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~v  168 (255)
                      ++++++++.+++|++|+||||||+..      +..+.+.++|.+.+++|+.++++++++++|+|++       .|+||++
T Consensus        95 v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-------~g~IV~i  167 (296)
T 3k31_A           95 VDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTN-------GGSILTL  167 (296)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT-------CEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CCEEEEE
Confidence            99999999999999999999999863      4567899999999999999999999999998864       6899999


Q ss_pred             cCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          169 SSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       169 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      ||..+..               +.+++..|++||+|+++|+++++.|++++|  |+||+|+||+|+|++.+..
T Consensus       168 sS~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~e~~~~g--Irvn~v~PG~v~T~~~~~~  223 (296)
T 3k31_A          168 SYYGAEK---------------VVPHYNVMGVCKAALEASVKYLAVDLGKQQ--IRVNAISAGPVRTLASSGI  223 (296)
T ss_dssp             ECGGGTS---------------CCTTTTHHHHHHHHHHHHHHHHHHHHHTTT--EEEEEEEECCCCCSSCCSC
T ss_pred             Eehhhcc---------------CCCCchhhHHHHHHHHHHHHHHHHHHhhcC--cEEEEEEECCCcCchhhcc
Confidence            9998776               555778999999999999999999999988  9999999999999987654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=100.00  E-value=5.2e-38  Score=266.92  Aligned_cols=202  Identities=27%  Similarity=0.335  Sum_probs=176.6

Q ss_pred             CCcccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Q 025275           15 SSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLAS   94 (255)
Q Consensus        15 ~~~~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s   94 (255)
                      ++.......+.++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++.+.  +.++.++.+|++|+++
T Consensus         8 ~~~~~~~~~m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~   85 (277)
T 2rhc_B            8 SGLVPRGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPE   85 (277)
T ss_dssp             --CCCTTTTTCCTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCCCccccccccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHH
Confidence            33344444455789999999999999999999999999999999999998888888887665  5578999999999999


Q ss_pred             HHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhccCCCCCeEEEecC
Q 025275           95 VRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDT--MKKTAQKSSREGRIVNVSS  170 (255)
Q Consensus        95 i~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--~~~~~~~~~~~g~ii~vsS  170 (255)
                      ++.+++++.+++|++|+||||||...  +..+.+.++|.+.+++|+.++++++++++|.  |.+     .+.|+||++||
T Consensus        86 v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~-----~~~g~iv~isS  160 (277)
T 2rhc_B           86 IEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLE-----RGTGRIVNIAS  160 (277)
T ss_dssp             HHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHH-----HTEEEEEEECC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhh-----cCCeEEEEECc
Confidence            99999999999999999999999764  3456889999999999999999999999998  876     34589999999


Q ss_pred             CccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          171 EAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      ..+..               +.++...|+++|+++++|+++++.|+.+.|  |++|+|+||+++|++...
T Consensus       161 ~~~~~---------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~  213 (277)
T 2rhc_B          161 TGGKQ---------------GVVHAAPYSASKHGVVGFTKALGLELARTG--ITVNAVCPGFVETPMAAS  213 (277)
T ss_dssp             GGGTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTE--EEEEEEEECSBCSHHHHH
T ss_pred             ccccc---------------CCCCCccHHHHHHHHHHHHHHHHHHHHHhC--cEEEEEecCcCcCchhhh
Confidence            98765               445678999999999999999999999888  999999999999998654

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=100.00  E-value=1e-37  Score=263.02  Aligned_cols=194  Identities=23%  Similarity=0.309  Sum_probs=173.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++.... +.++.++++|++|+++++++++++.
T Consensus         2 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~   80 (263)
T 3ai3_A            2 DMGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVR   80 (263)
T ss_dssp             CCCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            356889999999999999999999999999999999999888888777776532 3468999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +++|++|+||||||...  +..+.+.++|++.+++|+.++++++++++|+|++     .+.|+||++||..+..      
T Consensus        81 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~------  149 (263)
T 3ai3_A           81 SSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRA-----RGGGAIIHNASICAVQ------  149 (263)
T ss_dssp             HHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS------
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCcEEEEECchhhcC------
Confidence            99999999999999763  4567889999999999999999999999999986     3468999999998775      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|+++++++++++.|+.++|  |++|+|+||+++|++...
T Consensus       150 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  197 (263)
T 3ai3_A          150 ---------PLWYEPIYNVTKAALMMFSKTLATEVIKDN--IRVNCINPGLILTPDWIK  197 (263)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCCHHHHH
T ss_pred             ---------CCCCcchHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEecCcccCcchhh
Confidence                     445678999999999999999999999888  999999999999998654

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=100.00  E-value=6.4e-39  Score=270.49  Aligned_cols=194  Identities=18%  Similarity=0.261  Sum_probs=166.6

Q ss_pred             ccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec---cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN---MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      ...+++++|++|||||++|||+++|++|+++|++|++++|.   .+.+++..+++...  +.++.++++|++|+++++++
T Consensus         4 ~~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~   81 (262)
T 3ksu_A            4 TKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKL   81 (262)
T ss_dssp             CCCSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHH
T ss_pred             ccccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHH
Confidence            34578899999999999999999999999999999998765   34566666777655  66899999999999999999


Q ss_pred             HHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275           99 ASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      ++++.+++|++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|+|++       .|+||++||..+.. 
T Consensus        82 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-------~g~iv~isS~~~~~-  153 (262)
T 3ksu_A           82 FDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNP-------NGHIITIATSLLAA-  153 (262)
T ss_dssp             HHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE-------EEEEEEECCCHHHH-
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcC-------CCEEEEEechhhcc-
Confidence            9999999999999999999774  4557899999999999999999999999999843       58999999998776 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                    +.++...|++||+|+++|+++++.|+.++|  |+||+|+||+|+|++....
T Consensus       154 --------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~~  202 (262)
T 3ksu_A          154 --------------YTGFYSTYAGNKAPVEHYTRAASKELMKQQ--ISVNAIAPGPMDTSFFYGQ  202 (262)
T ss_dssp             --------------HHCCCCC-----CHHHHHHHHHHHHTTTTT--CEEEEEEECCCCTHHHHTC
T ss_pred             --------------CCCCCchhHHHHHHHHHHHHHHHHHHHHcC--cEEEEEeeCCCcCcccccc
Confidence                          334667899999999999999999999988  9999999999999987653

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=100.00  E-value=1.3e-37  Score=260.37  Aligned_cols=188  Identities=28%  Similarity=0.353  Sum_probs=162.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .++++|++|||||++|||++++++|+++|++|++++|+. +.+++   ++.+.  +.++.++++|++|+++++.+++++.
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (249)
T 2ew8_A            3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRNL--GRRVLTVKCDVSQPGDVEAFGKQVI   77 (249)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHhc--CCcEEEEEeecCCHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999998 55544   33333  4578999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      ++++++|+||||||...  ++.+.+.++|++.+++|+.++++++++++|+|++     .+.|+||++||..+..      
T Consensus        78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~------  146 (249)
T 2ew8_A           78 STFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKR-----NGWGRIINLTSTTYWL------  146 (249)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGGS------
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCeEEEEEcchhhcc------
Confidence            99999999999999764  3456889999999999999999999999999987     3468999999998776      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                               +.++...|+++|+++++|+++++.|+.++|  |++|+|+||+++|++.+
T Consensus       147 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~  193 (249)
T 2ew8_A          147 ---------KIEAYTHYISTKAANIGFTRALASDLGKDG--ITVNAIAPSLVRTATTE  193 (249)
T ss_dssp             ---------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCC------
T ss_pred             ---------CCCCchhHHHHHHHHHHHHHHHHHHHHhcC--cEEEEEecCcCcCccch
Confidence                     445678999999999999999999999988  99999999999999876

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=100.00  E-value=1.6e-37  Score=261.51  Aligned_cols=192  Identities=21%  Similarity=0.263  Sum_probs=172.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++....++.++.++.+|++|+++++.+++++.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (260)
T 2z1n_A            3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD   82 (260)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999888888877776543333789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++| +|+||||||...  +..+.+.++|.+.+++|+.++++++++++|+|.+     .+.|+||++||..+..       
T Consensus        83 ~~g-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~-------  149 (260)
T 2z1n_A           83 LGG-ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVE-----KGWGRMVYIGSVTLLR-------  149 (260)
T ss_dssp             TTC-CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS-------
T ss_pred             hcC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEECchhhcC-------
Confidence            999 999999999763  3456889999999999999999999999999987     3468999999998775       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                              +.++...|+++|+++++++++++.++.++|  |++|+|+||+++|++.+
T Consensus       150 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~  196 (260)
T 2z1n_A          150 --------PWQDLALSNIMRLPVIGVVRTLALELAPHG--VTVNAVLPSLILTDRVR  196 (260)
T ss_dssp             --------CCTTBHHHHHHTHHHHHHHHHHHHHHGGGT--EEEEEEEECHHHHCCCC
T ss_pred             --------CCCCCchhHHHHHHHHHHHHHHHHHHhhhC--eEEEEEEECCcccchhh
Confidence                    445678999999999999999999999988  99999999999999876

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=100.00  E-value=1.4e-37  Score=259.54  Aligned_cols=196  Identities=28%  Similarity=0.334  Sum_probs=173.9

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCC--CCHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV--SSLASVRKFASE  101 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~~~~si~~~~~~  101 (255)
                      ...+++|++|||||++|||++++++|+++|++|++++|+.+++++..+++.... ..++.++.+|+  +|.++++.++++
T Consensus         9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~d~d~~~~~~~~~~~~~   87 (247)
T 3i1j_A            9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG-QPQPLIIALNLENATAQQYRELAAR   87 (247)
T ss_dssp             TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-SCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred             CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-CCCceEEEeccccCCHHHHHHHHHH
Confidence            356889999999999999999999999999999999999999999888887753 24567777777  999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      +.+.+|++|+||||||...   +..+.+.++|++.+++|+.++++++++++|+|++     .+.++||++||..+..   
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~---  159 (247)
T 3i1j_A           88 VEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKR-----SEDASIAFTSSSVGRK---  159 (247)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-----SSSEEEEEECCGGGTS---
T ss_pred             HHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----CCCCeEEEEcchhhcC---
Confidence            9999999999999999753   3456889999999999999999999999999986     4578999999998776   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhh-CCCcEEEEEeeCCceecCcccccC
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKE-DGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~-~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                  +.++...|+++|+++++|+++++.++.. .+  |+||+|+||+++|++.+...
T Consensus       160 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~--i~v~~v~PG~v~t~~~~~~~  210 (247)
T 3i1j_A          160 ------------GRANWGAYGVSKFATEGLMQTLADELEGVTA--VRANSINPGATRTGMRAQAY  210 (247)
T ss_dssp             ------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSS--EEEEEEECCCCSSHHHHHHS
T ss_pred             ------------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCC--eEEEEEecCcccCccchhcc
Confidence                        5557789999999999999999999976 67  99999999999999876543

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=100.00  E-value=1.4e-37  Score=260.90  Aligned_cols=196  Identities=23%  Similarity=0.256  Sum_probs=172.4

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEE-eccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV-RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      .....++|++|||||++|||+++|++|+++|++|++++ |+.+...+..+++.+.  +.++.++.+|++|+++++.++++
T Consensus         7 ~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~   84 (256)
T 3ezl_A            7 HHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL--GFDFYASEGNVGDWDSTKQAFDK   84 (256)
T ss_dssp             ------CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeeEEEecCCCCHHHHHHHHHH
Confidence            44567899999999999999999999999999999988 6777777777777665  56799999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.++++++|+||||||...  ++.+.+.++|++.+++|+.++++++++++|+|.+     .+.|+||++||..+..    
T Consensus        85 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~----  155 (256)
T 3ezl_A           85 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVE-----RGWGRIINISSVNGQK----  155 (256)
T ss_dssp             HHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCCCGGG----
T ss_pred             HHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCEEEEEcchhhcc----
Confidence            9999999999999999874  4567889999999999999999999999999987     3568999999998876    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                 +.++...|+++|+++++|+++++.++.++|  |++|+|+||+++|++.+...
T Consensus       156 -----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~~  205 (256)
T 3ezl_A          156 -----------GQFGQTNYSTAKAGIHGFTMSLAQEVATKG--VTVNTVSPGYIGTDMVKAIR  205 (256)
T ss_dssp             -----------SCSCCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHTSC
T ss_pred             -----------CCCCCcccHHHHHHHHHHHHHHHHHHHHhC--CEEEEEEECcccCccccccC
Confidence                       555778999999999999999999999988  99999999999999887643

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=100.00  E-value=9.5e-38  Score=261.52  Aligned_cols=192  Identities=27%  Similarity=0.319  Sum_probs=156.6

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++++++++.
T Consensus         4 ~~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   81 (253)
T 3qiv_A            4 SMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD--GGTAISVAVDVSDPESAKAMADRTL   81 (253)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999988888776  5689999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC-----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          104 SQGRPLNILINNAGIMA-----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~-----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      +.++++|+||||||+..     +..+.+.++|++.+++|+.++++++++++|.|.+     .+.|+||++||..++.   
T Consensus        82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~---  153 (253)
T 3qiv_A           82 AEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTK-----RGGGAIVNQSSTAAWL---  153 (253)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTCEEEEEECC--------
T ss_pred             HHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-----cCCCEEEEECCccccC---
Confidence            99999999999999742     3456889999999999999999999999999987     3578999999988652   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                     +...|++||+++++|+++++.++.++|  |++|+|+||+++|++.+...
T Consensus       154 ---------------~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~~  200 (253)
T 3qiv_A          154 ---------------YSNYYGLAKVGINGLTQQLSRELGGRN--IRINAIAPGPIDTEANRTTT  200 (253)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTTTTT--EEEEEEEC------------
T ss_pred             ---------------CCchhHHHHHHHHHHHHHHHHHHhhcC--eEEEEEEecCCcccchhhcC
Confidence                           456799999999999999999999888  99999999999999876543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=100.00  E-value=2.2e-38  Score=269.94  Aligned_cols=202  Identities=21%  Similarity=0.187  Sum_probs=171.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec------------cchHHHHHHHHHhhCCCCceEEEEeCCCC
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN------------MAAGKDVREAIVKEIPSAKVDAMELDVSS   91 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   91 (255)
                      +.+++||++|||||++|||+++|++|+++|++|++++|+            .+.+++..+++...  +.++.++++|++|
T Consensus         5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~   82 (287)
T 3pxx_A            5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRD   82 (287)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTC
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCC
Confidence            557899999999999999999999999999999999997            55566666666554  6689999999999


Q ss_pred             HHHHHHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCC
Q 025275           92 LASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSE  171 (255)
Q Consensus        92 ~~si~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~  171 (255)
                      +++++++++++.+++|++|+||||||+.....+.+.++|++.+++|+.|+++++++++|+|.       +.|+||++||.
T Consensus        83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-------~~g~iv~isS~  155 (287)
T 3pxx_A           83 RAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLT-------SGASIITTGSV  155 (287)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCC-------TTCEEEEECCH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhh-------cCcEEEEeccc
Confidence            99999999999999999999999999876544578899999999999999999999999984       36899999999


Q ss_pred             ccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          172 AHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      .+..+....    +..+..+.++...|+++|+++++|+++++.+++++|  |+||+|+||+|+|++.+.
T Consensus       156 ~~~~~~~~~----~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~  218 (287)
T 3pxx_A          156 AGLIAAAQP----PGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQS--IRANVIHPTNVNTDMLNS  218 (287)
T ss_dssp             HHHHHHHCC----C-----CHHHHHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEESSBSSTTTSS
T ss_pred             hhccccccc----ccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcC--cEEEEEecCccccccccc
Confidence            887643211    111122234567899999999999999999999988  999999999999998764

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=100.00  E-value=2.2e-37  Score=260.50  Aligned_cols=193  Identities=24%  Similarity=0.288  Sum_probs=173.2

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ..++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++.+++++.
T Consensus         9 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   86 (260)
T 2zat_A            9 RKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE--GLSVTGTVCHVGKAEDRERLVAMAV   86 (260)
T ss_dssp             -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999988888888777665  5578999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          104 SQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      +.+|++|+||||||...   +..+.+.++|++.+++|+.++++++++++|+|++     .+.|+||++||..+..     
T Consensus        87 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~-----  156 (260)
T 2zat_A           87 NLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEK-----RGGGSVLIVSSVGAYH-----  156 (260)
T ss_dssp             HHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCEEEEEECCGGGTS-----
T ss_pred             HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCCEEEEEechhhcC-----
Confidence            99999999999999753   4556889999999999999999999999999987     4568999999998765     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +.++...|+++|+++++|+++++.|+.+.|  |++|+|+||+++|++...
T Consensus       157 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  204 (260)
T 2zat_A          157 ----------PFPNLGPYNVSKTALLGLTKNLAVELAPRN--IRVNCLAPGLIKTNFSQV  204 (260)
T ss_dssp             ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSSTTHH
T ss_pred             ----------CCCCchhHHHHHHHHHHHHHHHHHHhcccC--eEEEEEEECcccCccchh
Confidence                      445678999999999999999999999988  999999999999998653

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=100.00  E-value=1.3e-37  Score=261.68  Aligned_cols=189  Identities=23%  Similarity=0.310  Sum_probs=169.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch--HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA--GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++|++|||||++|||++++++|+++|++|++++|+.+.  +++..+++...  +.++.++++|++|+++++++++++.++
T Consensus         1 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            1 MSKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA--DQKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999887  77777777654  557899999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CeEEEecCCccccccccCcc
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSRE-GRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~-g~ii~vsS~~~~~~~~~~~~  182 (255)
                      +|++|+||||||...  +..+.+.++|.+++++|+.++++++++++|+|.++     +. |+||++||..+..       
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~-------  146 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDEL-----GVKGKIINAASIAAIQ-------  146 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-----TCCCEEEEECCGGGTS-------
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-----CCCcEEEEECcchhcc-------
Confidence            999999999999764  34568899999999999999999999999999863     34 8999999998765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|+++++|+++++.|+.++|  |+||+|+||+++|++.+.
T Consensus       147 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~vn~v~PG~v~t~~~~~  194 (258)
T 3a28_C          147 --------GFPILSAYSTTKFAVRGLTQAAAQELAPKG--HTVNAYAPGIVGTGMWEQ  194 (258)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCBCSHHHHH
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHHHHhhC--eEEEEEECCccCChhhhh
Confidence                    445678999999999999999999999988  999999999999998664

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=100.00  E-value=1.3e-37  Score=263.66  Aligned_cols=196  Identities=26%  Similarity=0.310  Sum_probs=169.5

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc-hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      +.+++++|++|||||++|||+++|++|+++|++|++++|+.+ ..+...+++...  +.++.++++|++|++++++++++
T Consensus        23 ~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~  100 (271)
T 4iin_A           23 NAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEK--GYKAAVIKFDAASESDFIEAIQT  100 (271)
T ss_dssp             -CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHH
Confidence            456789999999999999999999999999999999999544 445555556554  56899999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          102 YNSQGRPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.+.++++|+||||||+..+  ..+.+.++|.+.+++|+.++++++++++|.+++     .+.|+||++||..+..    
T Consensus       101 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~----  171 (271)
T 4iin_A          101 IVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSK-----SRFGSVVNVASIIGER----  171 (271)
T ss_dssp             HHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCHHHHH----
T ss_pred             HHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhh-----cCCCEEEEEechhhcC----
Confidence            99999999999999998743  456789999999999999999999999999987     3568999999998876    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                 +.++...|+++|+++++++++++.++..+|  |+||+|+||+++|++.+...
T Consensus       172 -----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~~~  221 (271)
T 4iin_A          172 -----------GNMGQTNYSASKGGMIAMSKSFAYEGALRN--IRFNSVTPGFIETDMNANLK  221 (271)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTT--EEEEEEEECSBCCC------
T ss_pred             -----------CCCCchHhHHHHHHHHHHHHHHHHHHHHhC--cEEEEEEeCcccCCchhhhc
Confidence                       555778999999999999999999999888  99999999999999877653

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=1.2e-37  Score=263.40  Aligned_cols=198  Identities=24%  Similarity=0.258  Sum_probs=169.1

Q ss_pred             cccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEE-eccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           21 VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV-RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        21 ~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      ..++..+++|++|||||++|||+++|++|+++|++|++++ ++.+...+..+++...  +.++.++.+|++|++++++++
T Consensus        17 ~~p~~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~   94 (269)
T 3gk3_A           17 QGPGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDA--GRDFKAYAVDVADFESCERCA   94 (269)
T ss_dssp             -------CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTT--TCCCEEEECCTTCHHHHHHHH
T ss_pred             CCchhhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHH
Confidence            3344447899999999999999999999999999999998 4444555555555443  568999999999999999999


Q ss_pred             HHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          100 SEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      +++.+++|++|+||||||+..  ++.+.+.++|++.+++|+.+++++++.++|.|.+     ++.|+||++||..+..  
T Consensus        95 ~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~--  167 (269)
T 3gk3_A           95 EKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVE-----RRFGRIVNIGSVNGSR--  167 (269)
T ss_dssp             HHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCHHHHH--
T ss_pred             HHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCEEEEeCChhhcc--
Confidence            999999999999999999874  4567899999999999999999999999999987     4568999999998876  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                   +.++...|+++|+|+++|+++++.++.++|  |+||+|+||+++|++.+...
T Consensus       168 -------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~~~  217 (269)
T 3gk3_A          168 -------------GAFGQANYASAKAGIHGFTKTLALETAKRG--ITVNTVSPGYLATAMVEAVP  217 (269)
T ss_dssp             -------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCTTTTC--
T ss_pred             -------------CCCCcchHHHHHHHHHHHHHHHHHHhhhcC--CEEEEEecCcccchhhhhhc
Confidence                         555778999999999999999999999988  99999999999999987543

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=100.00  E-value=1.4e-37  Score=261.78  Aligned_cols=191  Identities=31%  Similarity=0.305  Sum_probs=167.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++|++|||||++|||++++++|+++|++|++++|+.+. +++..+++.+.. +.++.++.+|++|+++++++++++.++
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999999887 777777775532 346889999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  +..+.+.++|++++++|+.++++++++++|+|++     .+.|+||++||..+..        
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~--------  147 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKK-----QGFGRIINIASAHGLV--------  147 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS--------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCEEEEECcHHhCc--------
Confidence            999999999999764  3456789999999999999999999999999986     3468999999998765        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                             +.++...|+++|+++++|+++++.+++++|  |++|+|+||+++|++.+.
T Consensus       148 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  195 (260)
T 1x1t_A          148 -------ASANKSAYVAAKHGVVGFTKVTALETAGQG--ITANAICPGWVRTPLVEK  195 (260)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTT--EEEEEEEECCBCC-----
T ss_pred             -------CCCCCchHHHHHHHHHHHHHHHHHHhccCC--EEEEEEeecCccCchHHH
Confidence                   445678999999999999999999999888  999999999999998764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=100.00  E-value=4.6e-38  Score=264.76  Aligned_cols=193  Identities=25%  Similarity=0.214  Sum_probs=165.0

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ++++++|++|||||++|||+++|++|+++|++|+++ +|+.+..++..+++.+.  +.++.++++|++|+++++++++++
T Consensus         3 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~   80 (259)
T 3edm_A            3 LQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL--GRSALAIKADLTNAAEVEAAISAA   80 (259)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT--TSCCEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHH
Confidence            467899999999999999999999999999999998 55666677777777665  568999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          103 NSQGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      .+++|++|+||||||..   .+..+.+.++|++.+++|+.|+++++++++|+|++       .|+||++||..+...   
T Consensus        81 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-------~g~iv~isS~~~~~~---  150 (259)
T 3edm_A           81 ADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAK-------GGAIVTFSSQAGRDG---  150 (259)
T ss_dssp             HHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-------EEEEEEECCHHHHHC---
T ss_pred             HHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCEEEEEcCHHhccC---
Confidence            99999999999999966   24567899999999999999999999999999864       589999999987621   


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                 +.++...|++||+|+++|+++++.|++++   |+||+|+||+++|++.+...
T Consensus       151 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~---I~vn~v~PG~v~T~~~~~~~  199 (259)
T 3edm_A          151 -----------GGPGALAYATSKGAVMTFTRGLAKEVGPK---IRVNAVCPGMISTTFHDTFT  199 (259)
T ss_dssp             -----------CSTTCHHHHHHHHHHHHHHHHHHHHHTTT---CEEEEEEECCBCC-------
T ss_pred             -----------CCCCcHHHHHHHHHHHHHHHHHHHHHCCC---CEEEEEEECCCcCccccccc
Confidence                       44567899999999999999999999764   99999999999999887653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=100.00  E-value=6.6e-38  Score=268.54  Aligned_cols=191  Identities=25%  Similarity=0.251  Sum_probs=168.8

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc--hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA--AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      .+++++||++|||||++|||+++|++|+++|++|++++|+.+  ..++..+.+...  +.++.++++|++|+++++++++
T Consensus        43 ~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~  120 (294)
T 3r3s_A           43 GSGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC--GRKAVLLPGDLSDESFARSLVH  120 (294)
T ss_dssp             CCSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT--TCCEEECCCCTTSHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHH
Confidence            456789999999999999999999999999999999998733  345555555544  5689999999999999999999


Q ss_pred             HHhcCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          101 EYNSQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      ++.+++|++|+||||||...   ++.+.+.++|++.+++|+.|+++++++++|+|++       +|+||++||..+..  
T Consensus       121 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-------~g~Iv~isS~~~~~--  191 (294)
T 3r3s_A          121 KAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPK-------GASIITTSSIQAYQ--  191 (294)
T ss_dssp             HHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCT-------TCEEEEECCGGGTS--
T ss_pred             HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc-------CCEEEEECChhhcc--
Confidence            99999999999999999753   3567899999999999999999999999998854       58999999999876  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                   +.++...|+++|+++++|+++++.|++++|  |+||+|+||+|+|++..
T Consensus       192 -------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~t~~~~  238 (294)
T 3r3s_A          192 -------------PSPHLLDYAATKAAILNYSRGLAKQVAEKG--IRVNIVAPGPIWTALQI  238 (294)
T ss_dssp             -------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBCSHHHH
T ss_pred             -------------CCCCchHHHHHHHHHHHHHHHHHHHHhhcC--eEEEEEecCcCcccccc
Confidence                         555778999999999999999999999998  99999999999999844

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=100.00  E-value=1.9e-37  Score=260.36  Aligned_cols=189  Identities=26%  Similarity=0.323  Sum_probs=170.0

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++|||||++|||++++++|+++|++|++++|+.+.+++..+++...  +.++.++++|++|+++++++++++.+++|+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAVEQARKTLGG   79 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            689999999999999999999999999999999988888888777664  457899999999999999999999999999


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|+||||||...  +..+.+.++|++.+++|+.++++++++++|.|.++    +..|+||++||..+..           
T Consensus        80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~----~~~g~iv~isS~~~~~-----------  144 (256)
T 1geg_A           80 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKE----GHGGKIINACSQAGHV-----------  144 (256)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TSCEEEEEECCGGGTS-----------
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc----CCCCEEEEECchhhcC-----------
Confidence            999999999763  45668899999999999999999999999999873    1158999999998776           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                          +.++...|+++|+++++|+++++.|+.++|  |++|+|+||+++|++...
T Consensus       145 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~  192 (256)
T 1geg_A          145 ----GNPELAVYSSSKFAVRGLTQTAARDLAPLG--ITVNGYCPGIVKTPMWAE  192 (256)
T ss_dssp             ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBSSHHHHH
T ss_pred             ----CCCCchhHHHHHHHHHHHHHHHHHHHHHcC--eEEEEEEECCCccchhhh
Confidence                445678999999999999999999999988  999999999999998654

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=271.22  Aligned_cols=199  Identities=23%  Similarity=0.271  Sum_probs=175.5

Q ss_pred             ccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-------HHHHHHHHHhhCCCCceEEEEeCCCCHHH
Q 025275           22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-------GKDVREAIVKEIPSAKVDAMELDVSSLAS   94 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s   94 (255)
                      ....+++||++|||||++|||+++|++|+++|++|++++|+.+.       +++..+++...  +.++.++.+|++|+++
T Consensus        38 ~~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~--g~~~~~~~~Dv~d~~~  115 (346)
T 3kvo_A           38 PNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV--GGKALPCIVDVRDEQQ  115 (346)
T ss_dssp             CCCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHT--TCEEEEEECCTTCHHH
T ss_pred             ccCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhc--CCeEEEEEccCCCHHH
Confidence            35567899999999999999999999999999999999999874       55667777665  6689999999999999


Q ss_pred             HHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           95 VRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        95 i~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ++++++++.+++|++|+||||||+..  +..+.+.++|++++++|+.|+++++++++|+|++     ++.|+||++||..
T Consensus       116 v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~-----~~~g~IV~iSS~~  190 (346)
T 3kvo_A          116 ISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKK-----SKVAHILNISPPL  190 (346)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTT-----CSSCEEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----CCCCEEEEECCHH
Confidence            99999999999999999999999764  4567889999999999999999999999999987     5678999999988


Q ss_pred             cccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCc-eecCcccccCc
Q 025275          173 HRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGS-IVTNLFRYNGI  243 (255)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~-v~t~~~~~~~~  243 (255)
                      +....             +.++...|+++|+++++|+++++.|+. .|  |+||+|+||+ ++|++.+....
T Consensus       191 ~~~~~-------------~~~~~~~Y~aSKaal~~l~~~la~e~~-~g--Irvn~v~PG~~i~T~~~~~~~~  246 (346)
T 3kvo_A          191 NLNPV-------------WFKQHCAYTIAKYGMSMYVLGMAEEFK-GE--IAVNALWPKTAIHTAAMDMLGG  246 (346)
T ss_dssp             CCCGG-------------GTSSSHHHHHHHHHHHHHHHHHHHHTT-TT--CEEEEEECSBCBCCHHHHHHCC
T ss_pred             HcCCC-------------CCCCchHHHHHHHHHHHHHHHHHHHhc-CC--cEEEEEeCCCccccHHHHhhcc
Confidence            76521             145678999999999999999999999 77  9999999995 99998775543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=100.00  E-value=1.2e-37  Score=266.44  Aligned_cols=191  Identities=24%  Similarity=0.308  Sum_probs=168.4

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHH-HHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVR-EAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++||++|||||++|||+++|++|+++|++|++++|+.+...+.. +.+...  +.++.++++|++|+++++++++++
T Consensus        42 ~~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~  119 (291)
T 3ijr_A           42 SEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE--GVKCVLLPGDLSDEQHCKDIVQET  119 (291)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT--TCCEEEEESCTTSHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999987544433 334333  568999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          103 NSQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      .+++|++|+||||||...   +..+.+.++|++.+++|+.|+++++++++|+|++       .|+||++||..+..    
T Consensus       120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-------~g~iv~isS~~~~~----  188 (291)
T 3ijr_A          120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQ-------GDVIINTASIVAYE----  188 (291)
T ss_dssp             HHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCT-------TCEEEEECCTHHHH----
T ss_pred             HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh-------CCEEEEEechHhcC----
Confidence            999999999999999763   3456789999999999999999999999999853       57999999999876    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                 +.++...|+++|+++++|+++++.|+.++|  |+||+|+||+|+|++...
T Consensus       189 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~  236 (291)
T 3ijr_A          189 -----------GNETLIDYSATKGAIVAFTRSLSQSLVQKG--IRVNGVAPGPIWTPLIPS  236 (291)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBCSTHHHH
T ss_pred             -----------CCCCChhHHHHHHHHHHHHHHHHHHHhhcC--EEEEEEeeCCCcCCcccc
Confidence                       455678999999999999999999999998  999999999999998653

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=100.00  E-value=1.7e-37  Score=265.62  Aligned_cols=196  Identities=18%  Similarity=0.182  Sum_probs=168.2

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEE-eccchHHHHHHHHHhhCCCCceEEEEeCCCCHH---------
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV-RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLA---------   93 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---------   93 (255)
                      ++++++|++|||||++|||++++++|+++|++|++++ |+.+.+++..+++.... +.++.++++|++|++         
T Consensus         4 m~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~   82 (291)
T 1e7w_A            4 MTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVATAPVSGADG   82 (291)
T ss_dssp             ----CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCCCC----
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhc-CCeeEEEEeecCCccccccccccc
Confidence            3568899999999999999999999999999999999 99888888888876332 457999999999999         


Q ss_pred             --------HHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCC--------------hHHHHHHHHHHHHHHHHHHHHHH
Q 025275           94 --------SVRKFASEYNSQGRPLNILINNAGIMA--SPFMLS--------------KDNIELQFATNHLGHFLLTHLLL  149 (255)
Q Consensus        94 --------si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~--------------~~~~~~~~~~n~~~~~~~~~~~~  149 (255)
                              +++++++++.+++|++|+||||||+..  +..+.+              .++|.+++++|+.++++++++++
T Consensus        83 ~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~  162 (291)
T 1e7w_A           83 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA  162 (291)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHH
Confidence                    999999999999999999999999763  345667              88999999999999999999999


Q ss_pred             HHHHHhhc-cCCCCCeEEEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEe
Q 025275          150 DTMKKTAQ-KSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSL  228 (255)
Q Consensus       150 ~~~~~~~~-~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v  228 (255)
                      |+|.++.. ..+..|+||++||..+..               +.++...|++||+++.+|+++++.|++++|  |+||+|
T Consensus       163 ~~m~~~~~~~~~~~g~Iv~isS~~~~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v  225 (291)
T 1e7w_A          163 HRVAGTPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQ--IRVNGV  225 (291)
T ss_dssp             HHHHTSCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEE
T ss_pred             HHHHhcCCCCCCCCcEEEEEechhhcC---------------CCCCCchhHHHHHHHHHHHHHHHHHHHhcC--eEEEEE
Confidence            99986210 001158999999998765               455778999999999999999999999988  999999


Q ss_pred             eCCceecCc
Q 025275          229 HPGSIVTNL  237 (255)
Q Consensus       229 ~PG~v~t~~  237 (255)
                      +||+++|++
T Consensus       226 ~PG~v~T~~  234 (291)
T 1e7w_A          226 GPGLSVLVD  234 (291)
T ss_dssp             EESSBCCGG
T ss_pred             eeCCccCCc
Confidence            999999998

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=1.9e-37  Score=260.83  Aligned_cols=195  Identities=26%  Similarity=0.294  Sum_probs=164.7

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      +|++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++++++++.
T Consensus         4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~   78 (261)
T 3n74_A            4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALAVAADISKEADVDAAVEAAL   78 (261)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999998887777655     4578999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          104 SQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      ++++++|+||||||...   +..+.+.++|++.+++|+.++++++++++|+|.++.. .++.++||++||..+..     
T Consensus        79 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~~~~~iv~isS~~~~~-----  152 (261)
T 3n74_A           79 SKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGA-KGQECVILNVASTGAGR-----  152 (261)
T ss_dssp             HHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCTTTTS-----
T ss_pred             HhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CCCCeEEEEeCchhhcC-----
Confidence            99999999999999764   2345788999999999999999999999999987422 13467899999998765     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                +.+....|+++|+++++|+++++.|+.++|  |+||+|+||+++|++.+.+
T Consensus       153 ----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~  201 (261)
T 3n74_A          153 ----------PRPNLAWYNATKGWVVSVTKALAIELAPAK--IRVVALNPVAGETPLLTTF  201 (261)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEEC----------
T ss_pred             ----------CCCCccHHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEecCcccChhhhhh
Confidence                      555778899999999999999999999988  9999999999999987754

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=100.00  E-value=2e-37  Score=263.57  Aligned_cols=191  Identities=26%  Similarity=0.268  Sum_probs=171.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCC---ceEEEEeCCCCHHHHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA---KVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.   ++.++++|++|+++++++++++
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dv~~~~~v~~~~~~~   80 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKS--GVSEKQVNSVVADVTTEDGQDQIINST   80 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--CCCCcceEEEEecCCCHHHHHHHHHHH
Confidence            578999999999999999999999999999999999998888887777654  33   7899999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCCC------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275          103 NSQGRPLNILINNAGIMAS------PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~------~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      .+++|++|+||||||....      ..+.+.++|++.+++|+.++++++++++|+|.++     + |+||++||..+.. 
T Consensus        81 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-----~-g~iv~isS~~~~~-  153 (280)
T 1xkq_A           81 LKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-----K-GEIVNVSSIVAGP-  153 (280)
T ss_dssp             HHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-----T-CEEEEECCGGGSS-
T ss_pred             HHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcC-----C-CcEEEecCccccC-
Confidence            9999999999999997642      4567889999999999999999999999999862     2 8999999988765 


Q ss_pred             cccCccCCCCCcccCC-CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          177 YSEGIRFDKINDESAY-NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~-~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                    +. ++...|+++|+++++|+++++.|+.+.|  |++|+|+||+++|++.+..
T Consensus       154 --------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~  203 (280)
T 1xkq_A          154 --------------QAQPDFLYYAIAKAALDQYTRSTAIDLAKFG--IRVNSVSPGMVETGFTNAM  203 (280)
T ss_dssp             --------------SCCCSSHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEEECCBCSSHHHHT
T ss_pred             --------------CCCCcccHHHHHHHHHHHHHHHHHHHhccCC--eEEEEEeeCcCcCCccccc
Confidence                          33 4668899999999999999999999988  9999999999999987654

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=100.00  E-value=2.9e-37  Score=264.40  Aligned_cols=192  Identities=18%  Similarity=0.153  Sum_probs=163.7

Q ss_pred             CCCCCCcEEEEecCCC--chHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~--giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      +.++++|++|||||+|  |||+++|++|+++|++|++++|+.+ ..+..+++.+..  .++.++++|++|++++++++++
T Consensus        26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~-~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~  102 (293)
T 3grk_A           26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDA-LKKRVEPLAEEL--GAFVAGHCDVADAASIDAVFET  102 (293)
T ss_dssp             -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHH-HHHHHHHHHHHH--TCEEEEECCTTCHHHHHHHHHH
T ss_pred             cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhc--CCceEEECCCCCHHHHHHHHHH
Confidence            3468999999999994  5999999999999999999999954 344445554442  3688999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          102 YNSQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      +.+++|++|+||||||+..      ++.+.+.++|.+.+++|+.++++++++++|+|++       .|+||++||..+..
T Consensus       103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-------~g~Iv~isS~~~~~  175 (293)
T 3grk_A          103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMAD-------GGSILTLTYYGAEK  175 (293)
T ss_dssp             HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT-------CEEEEEEECGGGTS
T ss_pred             HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCEEEEEeehhhcc
Confidence            9999999999999999863      4567889999999999999999999999999964       68999999998776


Q ss_pred             ccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          176 AYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                     +.++...|++||+|+++|+++++.|++++|  |+||+|+||+|+|++.+...
T Consensus       176 ---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~~~  225 (293)
T 3grk_A          176 ---------------VMPNYNVMGVAKAALEASVKYLAVDLGPQN--IRVNAISAGPIKTLAASGIG  225 (293)
T ss_dssp             ---------------BCTTTTHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCCCC------C
T ss_pred             ---------------CCCchHHHHHHHHHHHHHHHHHHHHHhHhC--CEEEEEecCCCcchhhhccc
Confidence                           555778999999999999999999999998  99999999999999876543

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=100.00  E-value=2e-37  Score=268.71  Aligned_cols=201  Identities=23%  Similarity=0.223  Sum_probs=175.9

Q ss_pred             cccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec----------cchHHHHHHHHHhhCCCCceEEEEeCCC
Q 025275           21 VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN----------MAAGKDVREAIVKEIPSAKVDAMELDVS   90 (255)
Q Consensus        21 ~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   90 (255)
                      +..+..++||++|||||++|||+++|++|+++|++|++++|+          .+.+++..+++...  +.++.++.+|++
T Consensus        19 p~~m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   96 (322)
T 3qlj_A           19 PGSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA--GGEAVADGSNVA   96 (322)
T ss_dssp             ---CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHT--TCEEEEECCCTT
T ss_pred             CchhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhc--CCcEEEEECCCC
Confidence            344567899999999999999999999999999999999998          67788888888765  568999999999


Q ss_pred             CHHHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCeEEE
Q 025275           91 SLASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQ-KSSREGRIVN  167 (255)
Q Consensus        91 ~~~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~g~ii~  167 (255)
                      |+++++++++++.+++|++|+||||||+..  ++.+.+.++|++.+++|+.|+++++++++++|.+... ..+..|+||+
T Consensus        97 d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~  176 (322)
T 3qlj_A           97 DWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIIN  176 (322)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEE
Confidence            999999999999999999999999999874  3467899999999999999999999999999986432 1223489999


Q ss_pred             ecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          168 VSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       168 vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      +||..+..               +.++...|++||+|+++|+++++.|++++|  |+||+|+|| +.|++....
T Consensus       177 isS~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~e~~~~g--I~vn~v~PG-~~t~~~~~~  232 (322)
T 3qlj_A          177 TSSGAGLQ---------------GSVGQGNYSAAKAGIATLTLVGAAEMGRYG--VTVNAIAPS-ARTRMTETV  232 (322)
T ss_dssp             ECCHHHHH---------------CBTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEEC-TTSCCSCCS
T ss_pred             EcCHHHcc---------------CCCCCccHHHHHHHHHHHHHHHHHHhcccC--cEEEEecCC-CCCccchhh
Confidence            99998876               445678999999999999999999999998  999999999 999987654

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=100.00  E-value=3.5e-37  Score=257.32  Aligned_cols=187  Identities=24%  Similarity=0.303  Sum_probs=165.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++     +  +.++.+|++|+++++++++++.+
T Consensus         1 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~--~~~~~~D~~~~~~~~~~~~~~~~   73 (245)
T 1uls_A            1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-----G--AHPVVMDVADPASVERGFAEALA   73 (245)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----T--CEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----C--CEEEEecCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999977665544332     2  78899999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|+||||||...  +..+.+.++|++++++|+.++++++++++|+|++     .+.|+||++||.. ..       
T Consensus        74 ~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-----~~~g~iv~isS~~-~~-------  140 (245)
T 1uls_A           74 HLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMRE-----KNPGSIVLTASRV-YL-------  140 (245)
T ss_dssp             HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TCCEEEEEECCGG-GG-------
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCCEEEEEccch-hc-------
Confidence            9999999999999764  3466789999999999999999999999999976     4568999999987 54       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +.++...|+++|+++.+|+++++.|+.++|  |++|+|+||+++|++.+..
T Consensus       141 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~  189 (245)
T 1uls_A          141 --------GNLGQANYAASMAGVVGLTRTLALELGRWG--IRVNTLAPGFIETRMTAKV  189 (245)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCTTTSSS
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHHHhHhC--eEEEEEEeCcCcCcchhhc
Confidence                    344678999999999999999999999988  9999999999999987643

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=100.00  E-value=3.2e-37  Score=258.06  Aligned_cols=183  Identities=23%  Similarity=0.377  Sum_probs=161.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |++|||||++|||++++++|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++++++++.+++|++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   75 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWCNI   75 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHTSCTTTCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            68999999999999999999999999999999988777766655     2468999999999999999999999999999


Q ss_pred             eEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          110 NILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       110 d~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      |+||||||+..   +..+.+.++|.+.+++|+.|+++++++++|+|.+     .+.|+||++||..+..           
T Consensus        76 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-----~~~g~iv~isS~~~~~-----------  139 (248)
T 3asu_A           76 DILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVE-----RNHGHIINIGSTAGSW-----------  139 (248)
T ss_dssp             CEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCCEEEEECCGGGTS-----------
T ss_pred             CEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCceEEEEccchhcc-----------
Confidence            99999999752   4567889999999999999999999999999986     3468999999998765           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCcee-cCccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV-TNLFR  239 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~-t~~~~  239 (255)
                          +.++...|++||+++++|+++++.|+.++|  |+||+|+||+++ |++..
T Consensus       140 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~gT~~~~  187 (248)
T 3asu_A          140 ----PYAGGNVYGATKAFVRQFSLNLRTDLHGTA--VRVTDIEPGLVGGTEFSN  187 (248)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHTTTSC--CEEEEEEECSBCC-----
T ss_pred             ----CCCCCchHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEeccccccCcchh
Confidence                455678999999999999999999999888  999999999999 99864

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=100.00  E-value=2.9e-37  Score=262.86  Aligned_cols=187  Identities=21%  Similarity=0.224  Sum_probs=162.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++++++++.+
T Consensus         1 M~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   75 (281)
T 3zv4_A            1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVVGDVRSLQDQKRAAERCLA   75 (281)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----BTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc-----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999987766655443     45789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCCC---C----CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          105 QGRPLNILINNAGIMAS---P----FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~---~----~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      ++|++|+||||||+...   .    .+.+.++|++++++|+.++++++++++|+|.++      +|+||++||..+..  
T Consensus        76 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~------~g~iv~isS~~~~~--  147 (281)
T 3zv4_A           76 AFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSS------RGSVVFTISNAGFY--  147 (281)
T ss_dssp             HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------TCEEEEECCGGGTS--
T ss_pred             hcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhc------CCeEEEEecchhcc--
Confidence            99999999999997632   1    234457799999999999999999999999862      48999999998776  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                   +.++...|++||+++++|+++++.|++++   ||||+|+||+++|++...
T Consensus       148 -------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~---Irvn~v~PG~v~T~~~~~  194 (281)
T 3zv4_A          148 -------------PNGGGPLYTATKHAVVGLVRQMAFELAPH---VRVNGVAPGGMNTDLRGP  194 (281)
T ss_dssp             -------------SSSSCHHHHHHHHHHHHHHHHHHHHHTTT---SEEEEEEECSSCC--CCC
T ss_pred             -------------CCCCCchhHHHHHHHHHHHHHHHHHhcCC---CEEEEEECCcCcCCcccc
Confidence                         55577899999999999999999999864   999999999999998754

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=100.00  E-value=2.5e-37  Score=259.49  Aligned_cols=188  Identities=28%  Similarity=0.303  Sum_probs=167.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++++++++.++
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999987766655544     346889999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  +..+.+.++|.+.+++|+.++++++++++|.|++     .+.|+||++||..+..        
T Consensus        77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~--------  143 (254)
T 1hdc_A           77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKD-----AGGGSIVNISSAAGLM--------  143 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS--------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCCEEEEECchhhcc--------
Confidence            999999999999764  3456789999999999999999999999999987     3468999999998765        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                             +.++...|+++|+++++|+++++.|+.+.|  |++|+|+||+++|++.+.
T Consensus       144 -------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  191 (254)
T 1hdc_A          144 -------GLALTSSYGASKWGVRGLSKLAAVELGTDR--IRVNSVHPGMTYTPMTAE  191 (254)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHH
T ss_pred             -------CCCCchhHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEecccCcCccccc
Confidence                   445678999999999999999999999888  999999999999998764

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=100.00  E-value=6.5e-37  Score=257.21  Aligned_cols=186  Identities=28%  Similarity=0.296  Sum_probs=166.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++++|++|||||+||||++++++|+++|++|++++|+.+. ++..+++     . + .++++|++|+++++.+++++.+
T Consensus         2 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~-----~-~-~~~~~D~~~~~~~~~~~~~~~~   73 (256)
T 2d1y_A            2 GLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI-----G-G-AFFQVDLEDERERVRFVEEAAY   73 (256)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHH-----T-C-EEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHh-----h-C-CEEEeeCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999876 5555544     1 3 7899999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|+||||||...  +..+.+.++|.+.+++|+.++++++++++|+|++     .+.|+||++||..+..       
T Consensus        74 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~-----~~~g~iv~isS~~~~~-------  141 (256)
T 2d1y_A           74 ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRK-----VGGGAIVNVASVQGLF-------  141 (256)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-----TTCEEEEEECCGGGTS-------
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEEccccccC-------
Confidence            9999999999999764  4567889999999999999999999999999986     4568999999998765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|++||+++++|+++++.|+.+.|  |++|+|+||+++|++...
T Consensus       142 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  189 (256)
T 2d1y_A          142 --------AEQENAAYNASKGGLVNLTRSLALDLAPLR--IRVNAVAPGAIATEAVLE  189 (256)
T ss_dssp             --------BCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHH
T ss_pred             --------CCCCChhHHHHHHHHHHHHHHHHHHHhhcC--eEEEEEeeCCccCchhhh
Confidence                    445678999999999999999999999888  999999999999998654

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=100.00  E-value=5.9e-37  Score=260.61  Aligned_cols=189  Identities=28%  Similarity=0.358  Sum_probs=169.5

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++.+++++.++
T Consensus         2 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~   76 (281)
T 3m1a_A            2 SESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY-----PDRAEAISLDVTDGERIDVVAADVLAR   76 (281)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC-----TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCCceEEEeeCCCHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999999999998877665543     457899999999999999999999999


Q ss_pred             CCCeeEEEEccCCC--CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||..  .+..+.+.++|.+.+++|+.|+++++++++|.|++     .+.|+||++||..+..        
T Consensus        77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~~~iv~~sS~~~~~--------  143 (281)
T 3m1a_A           77 YGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRE-----RGSGSVVNISSFGGQL--------  143 (281)
T ss_dssp             HSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTC--------
T ss_pred             CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCEEEEEcCccccC--------
Confidence            99999999999976  34567889999999999999999999999999987     3568999999998776        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                             +.++...|++||+++++++++++.+++++|  |++|+|+||+++|+++...
T Consensus       144 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~~  192 (281)
T 3m1a_A          144 -------SFAGFSAYSATKAALEQLSEGLADEVAPFG--IKVLIVEPGAFRTNLFGKG  192 (281)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCCTTTCCC
T ss_pred             -------CCCCchHHHHHHHHHHHHHHHHHHHhhccC--cEEEEEecCcccccccccc
Confidence                   555778999999999999999999999988  9999999999999987644

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=100.00  E-value=5e-37  Score=257.69  Aligned_cols=189  Identities=26%  Similarity=0.292  Sum_probs=168.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++|++|||||++|||++++++|+++|++|++++|+.+  ++..+++...  +.++.++.+|++|+++++++++++.++
T Consensus         1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~   76 (255)
T 2q2v_A            1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARH--GVKAVHHPADLSDVAQIEALFALAERE   76 (255)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTT--SCCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhc--CCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999876  4555666543  457889999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  +..+.+.++|++.+++|+.++++++++++|.|++     .+.|+||++||..+..        
T Consensus        77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~--------  143 (255)
T 2q2v_A           77 FGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRA-----RNWGRIINIASVHGLV--------  143 (255)
T ss_dssp             HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCEEEEEECCGGGTS--------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCcEEEEEcCchhcc--------
Confidence            999999999999764  3456789999999999999999999999999987     4568999999998765        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                             +.++...|+++|+++++|+++++.|+.+.|  |++|+|+||+++|++.+.
T Consensus       144 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  191 (255)
T 2q2v_A          144 -------GSTGKAAYVAAKHGVVGLTKVVGLETATSN--VTCNAICPGWVLTPLVQK  191 (255)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHHHTTTSS--EEEEEEEESSBCCHHHHH
T ss_pred             -------CCCCchhHHHHHHHHHHHHHHHHHHhcccC--cEEEEEeeCCCcCcchhh
Confidence                   445678999999999999999999999888  999999999999998653

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=100.00  E-value=7.2e-37  Score=257.61  Aligned_cols=188  Identities=26%  Similarity=0.308  Sum_probs=167.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|++|||||+||||++++++|+++|++|++++|+.+++++..+++.     .++.++++|++|+++++++++++.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~   77 (260)
T 1nff_A            3 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVT   77 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----cCceEEEecCCCHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999877766655542     2478999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|+||||||...  +..+.+.++|++.+++|+.++++++++++|+|++     .+.|+||++||..+..       
T Consensus        78 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~-------  145 (260)
T 1nff_A           78 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKE-----AGRGSIINISSIEGLA-------  145 (260)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS-------
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCCEEEEEeehhhcC-------
Confidence            9999999999999763  4566889999999999999999999999999987     3468999999998765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                              +.++...|+++|+++++++++++.++.++|  |++|+|+||+++|++.+
T Consensus       146 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~  192 (260)
T 1nff_A          146 --------GTVACHGYTATKFAVRGLTKSTALELGPSG--IRVNSIHPGLVKTPMTD  192 (260)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCSGGGT
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHHhCccC--cEEEEEEeCCCCCCccc
Confidence                    444667999999999999999999999888  99999999999999865

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=100.00  E-value=9.5e-37  Score=256.69  Aligned_cols=190  Identities=24%  Similarity=0.255  Sum_probs=167.7

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++...  +.++.++++|++|+++++.+++++.++
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T 2qq5_A            2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL--GGQCVPVVCDSSQESEVRSLFEQVDRE   79 (260)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--SSEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence            367899999999999999999999999999999999988888888888765  567899999999999999999999886


Q ss_pred             -CCCeeEEEEccC--CC-------CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          106 -GRPLNILINNAG--IM-------ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       106 -~g~id~lv~~ag--~~-------~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                       +|++|+||||||  ..       .+..+.+.++|.+++++|+.++++++++++|.|.+     .+.|+||++||..+..
T Consensus        80 ~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~  154 (260)
T 2qq5_A           80 QQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVP-----AGQGLIVVISSPGSLQ  154 (260)
T ss_dssp             HTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGG-----GTCCEEEEECCGGGTS
T ss_pred             cCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhh-----cCCcEEEEEcChhhcC
Confidence             899999999995  32       34567788999999999999999999999999976     3468999999988653


Q ss_pred             ccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          176 AYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                     + .+...|++||+++++|+++++.|+++.|  |++|+|+||+++|++.+.
T Consensus       155 ---------------~-~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~  201 (260)
T 2qq5_A          155 ---------------Y-MFNVPYGVGKAACDKLAADCAHELRRHG--VSCVSLWPGIVQTELLKE  201 (260)
T ss_dssp             ---------------C-CSSHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEECCCSCTTTC--
T ss_pred             ---------------C-CCCCchHHHHHHHHHHHHHHHHHhccCC--eEEEEEecCccccHHHHH
Confidence                           1 1346899999999999999999999988  999999999999998764

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=100.00  E-value=7.4e-37  Score=258.33  Aligned_cols=206  Identities=25%  Similarity=0.290  Sum_probs=170.7

Q ss_pred             CCCCcccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCCCCceEEEEeCCCC
Q 025275           13 SASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVSS   91 (255)
Q Consensus        13 ~~~~~~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   91 (255)
                      +.+....++..+.++++|++|||||++|||+++|++|+++|++|+++ .|+.+.+++..+++.+.  +.++.++.+|++|
T Consensus        10 ~~~~~~~n~~~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~   87 (267)
T 4iiu_A           10 GVDLGTENLYFQSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVAN--GGNGRLLSFDVAN   87 (267)
T ss_dssp             ---------------CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTC
T ss_pred             ccccCChhhhhccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc--CCceEEEEecCCC
Confidence            34555666667777899999999999999999999999999998665 56677778888888776  5689999999999


Q ss_pred             HHHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEec
Q 025275           92 LASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVS  169 (255)
Q Consensus        92 ~~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vs  169 (255)
                      +++++++++++.++++++|+||||||...  +..+.+.++|.+.+++|+.+++++++.+++.+.+.    ++.|+||++|
T Consensus        88 ~~~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----~~~g~iv~is  163 (267)
T 4iiu_A           88 REQCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGA----RQGGRIITLS  163 (267)
T ss_dssp             HHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TSCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCcEEEEEc
Confidence            99999999999999999999999999874  34568899999999999999999999999988632    4578999999


Q ss_pred             CCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          170 SEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       170 S~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      |..+..               +.++...|+++|+|+++|+++++.++.++|  |++|+|+||+++|++.+..
T Consensus       164 S~~~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~  218 (267)
T 4iiu_A          164 SVSGVM---------------GNRGQVNYSAAKAGIIGATKALAIELAKRK--ITVNCIAPGLIDTGMIEME  218 (267)
T ss_dssp             CHHHHH---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSTTCCCC
T ss_pred             chHhcc---------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcC--eEEEEEEEeeecCCccccc
Confidence            999876               555778999999999999999999999988  9999999999999987643

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=100.00  E-value=6.5e-37  Score=261.45  Aligned_cols=199  Identities=24%  Similarity=0.249  Sum_probs=165.3

Q ss_pred             cccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEEEEeCCCC----HHHH
Q 025275           21 VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDAMELDVSS----LASV   95 (255)
Q Consensus        21 ~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~----~~si   95 (255)
                      .....++++|++|||||++|||+++|++|+++|++|++++|+. +.+++..+++.... +.++.++++|++|    ++++
T Consensus        15 ~~~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~v   93 (288)
T 2x9g_A           15 VPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER-SNTAVVCQADLTNSNVLPASC   93 (288)
T ss_dssp             -------CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSCSTTHHHHH
T ss_pred             CCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhc-CCceEEEEeecCCccCCHHHH
Confidence            3345668899999999999999999999999999999999998 77888877776332 4578999999999    9999


Q ss_pred             HHHHHHHhcCCCCeeEEEEccCCCC--CC-----CC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCC
Q 025275           96 RKFASEYNSQGRPLNILINNAGIMA--SP-----FM-----LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQ-KSSRE  162 (255)
Q Consensus        96 ~~~~~~~~~~~g~id~lv~~ag~~~--~~-----~~-----~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~  162 (255)
                      +++++++.+.+|++|+||||||+..  +.     .+     .+.++|.+.+++|+.++++++++++|.|.++.. .....
T Consensus        94 ~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~  173 (288)
T 2x9g_A           94 EEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSN  173 (288)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence            9999999999999999999999764  23     34     677899999999999999999999999976210 00116


Q ss_pred             CeEEEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          163 GRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       163 g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      |+||++||..+..               +.++...|++||+++++|+++++.++.++|  |+||+|+||+++|++
T Consensus       174 g~iv~isS~~~~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~t~~  231 (288)
T 2x9g_A          174 LSIVNLCDAMVDQ---------------PCMAFSLYNMGKHALVGLTQSAALELAPYG--IRVNGVAPGVSLLPV  231 (288)
T ss_dssp             EEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESSCSCCT
T ss_pred             eEEEEEecccccC---------------CCCCCchHHHHHHHHHHHHHHHHHHhhccC--eEEEEEEeccccCcc
Confidence            8999999998765               455778999999999999999999999988  999999999999998

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=100.00  E-value=7.5e-37  Score=257.97  Aligned_cols=194  Identities=16%  Similarity=0.154  Sum_probs=170.7

Q ss_pred             CCCCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        24 ~~~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ++++++|++|||||+  +|||+++|++|+++|++|++++|+... .+..+++.+..+..++.++++|++|++++++++++
T Consensus         2 ~~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   80 (266)
T 3oig_A            2 NFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERL-EKSVHELAGTLDRNDSIILPCDVTNDAEIETCFAS   80 (266)
T ss_dssp             CSCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG-HHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHH
T ss_pred             ccccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHH-HHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHH
Confidence            467899999999999  669999999999999999999998644 44455555544445799999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          102 YNSQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      +.++++++|+||||||...      +..+.+.+++.+.+++|+.++++++++++|++++       .|+||++||..+..
T Consensus        81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-------~g~iv~isS~~~~~  153 (266)
T 3oig_A           81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTE-------GGSIVTLTYLGGEL  153 (266)
T ss_dssp             HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT-------CEEEEEEECGGGTS
T ss_pred             HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCC-------CceEEEEecccccc
Confidence            9999999999999999763      3456889999999999999999999999998864       68999999998876


Q ss_pred             ccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          176 AYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                     +.++...|++||+|+++|+++++.|++++|  |+||+|+||+++|++.+...
T Consensus       154 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~~~  203 (266)
T 3oig_A          154 ---------------VMPNYNVMGVAKASLDASVKYLAADLGKEN--IRVNSISAGPIRTLSAKGIS  203 (266)
T ss_dssp             ---------------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCCCSGGGTTCT
T ss_pred             ---------------cCCCcchhHHHHHHHHHHHHHHHHHHhhcC--cEEEEEecCccccccccccc
Confidence                           555778999999999999999999999988  99999999999999877654

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=100.00  E-value=4.5e-37  Score=260.14  Aligned_cols=184  Identities=25%  Similarity=0.299  Sum_probs=162.5

Q ss_pred             ccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      .+..++++|++|||||++|||+++|++|+++|++|++++|+.+..            ...+..+++|++|++++++++++
T Consensus         7 ~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~   74 (269)
T 3vtz_A            7 HHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD------------VNVSDHFKIDVTNEEEVKEAVEK   74 (269)
T ss_dssp             ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C------------TTSSEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc------------cCceeEEEecCCCHHHHHHHHHH
Confidence            355678999999999999999999999999999999999987643            12567899999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.+++|++|+||||||+..  +..+.+.++|++++++|+.|+++++++++|+|.+     .+.|+||++||..+..    
T Consensus        75 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~----  145 (269)
T 3vtz_A           75 TTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLA-----IGHGSIINIASVQSYA----  145 (269)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS----
T ss_pred             HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCCEEEEECchhhcc----
Confidence            9999999999999999864  3556889999999999999999999999999987     4578999999998876    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                 +.++...|++||+++++|+++++.|+++ +  |+||+|+||+|+|++...
T Consensus       146 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~-~--i~vn~v~PG~v~T~~~~~  192 (269)
T 3vtz_A          146 -----------ATKNAAAYVTSKHALLGLTRSVAIDYAP-K--IRCNAVCPGTIMTPMVIK  192 (269)
T ss_dssp             -----------BCTTCHHHHHHHHHHHHHHHHHHHHHTT-T--EEEEEEEECSBCCHHHHH
T ss_pred             -----------CCCCChhHHHHHHHHHHHHHHHHHHhcC-C--CEEEEEEECCCcCcchhh
Confidence                       4557789999999999999999999987 6  999999999999998654

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-37  Score=256.03  Aligned_cols=184  Identities=26%  Similarity=0.309  Sum_probs=164.8

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +|++|||||++|||+++|++|+++|  +.|++++|+.+.+++..+++     +.++.++++|++|+++++++++++.+++
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY-----GDRFFYVVGDITEDSVLKQLVNAAVKGH   76 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH-----GGGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh-----CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            6999999999999999999999986  68999999988877766655     4578999999999999999999999999


Q ss_pred             CCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          107 RPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       107 g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      |++|+||||||..   .+..+.+.++|++.+++|+.|+++++++++|+|+++      +|+||++||..+..        
T Consensus        77 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~------~g~iv~isS~~~~~--------  142 (254)
T 3kzv_A           77 GKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKT------NGNVVFVSSDACNM--------  142 (254)
T ss_dssp             SCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------TCEEEEECCSCCCC--------
T ss_pred             CCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc------CCeEEEEcCchhcc--------
Confidence            9999999999975   345678999999999999999999999999999872      38999999998776        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                             +.++...|++||+++++|+++++.|+  .+  |+||+|+||+++|++.+...
T Consensus       143 -------~~~~~~~Y~asK~a~~~~~~~la~e~--~~--i~vn~v~PG~v~t~~~~~~~  190 (254)
T 3kzv_A          143 -------YFSSWGAYGSSKAALNHFAMTLANEE--RQ--VKAIAVAPGIVDTDMQVNIR  190 (254)
T ss_dssp             -------SSCCSHHHHHHHHHHHHHHHHHHHHC--TT--SEEEEEECSSCCCCCSCCCC
T ss_pred             -------CCCCcchHHHHHHHHHHHHHHHHhhc--cC--cEEEEEeCCcccchhHHHhh
Confidence                   55577899999999999999999998  45  99999999999999987643

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=5.5e-37  Score=260.07  Aligned_cols=190  Identities=25%  Similarity=0.303  Sum_probs=163.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .+++ |++|||||++|||++++++|+++|++|++++|+.+.+++..+++...   .++.++++|++|+++++.+++++.+
T Consensus        18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~   93 (272)
T 2nwq_A           18 SHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPE   93 (272)
T ss_dssp             ---C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCG
T ss_pred             CCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3455 99999999999999999999999999999999988887777766432   4789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-eEEEecCCccccccccC
Q 025275          105 QGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREG-RIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g-~ii~vsS~~~~~~~~~~  180 (255)
                      ++|++|+||||||+..   +..+.+.++|++++++|+.|+++++++++|.|.+     .+.| +||++||..+..     
T Consensus        94 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~-----~~~g~~IV~isS~~~~~-----  163 (272)
T 2nwq_A           94 EFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIA-----HGAGASIVNLGSVAGKW-----  163 (272)
T ss_dssp             GGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HCTTCEEEEECCGGGTS-----
T ss_pred             HhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCcEEEEeCCchhcc-----
Confidence            9999999999999753   3456889999999999999999999999999987     3457 999999998765     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +.++...|+++|+++++|+++++.|+.+.|  |++|+|+||+++|++...
T Consensus       164 ----------~~~~~~~Y~asKaa~~~l~~~la~el~~~g--Irvn~v~PG~v~T~~~~~  211 (272)
T 2nwq_A          164 ----------PYPGSHVYGGTKAFVEQFSLNLRCDLQGTG--VRVTNLEPGLCESEFSLV  211 (272)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHTTCTTSC--CEEEEEEECSBC------
T ss_pred             ----------CCCCCchHHHHHHHHHHHHHHHHHHhCccC--eEEEEEEcCCCcCcchhc
Confidence                      445678999999999999999999999888  999999999999998653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=100.00  E-value=1.1e-36  Score=259.42  Aligned_cols=207  Identities=25%  Similarity=0.339  Sum_probs=172.1

Q ss_pred             cCCCCCCCCCcccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-HHHHHHHHHhhCCCCceEEE
Q 025275            7 KGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-GKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~~   85 (255)
                      ++++.++..+.+. ....+++++|++|||||++|||++++++|+++|++|++++|+.+. .++..+++...  +.++.++
T Consensus         8 r~~~~~~~~~~~~-~~~~~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~   84 (283)
T 1g0o_A            8 RGESKYDAIPGPL-GPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACV   84 (283)
T ss_dssp             ----CTTCCCSCS-SGGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEE
T ss_pred             ccccccCCCCCCC-CCcccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHh--CCCeEEE
Confidence            3444444333322 123456899999999999999999999999999999999998764 45555666554  5578999


Q ss_pred             EeCCCCHHHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 025275           86 ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREG  163 (255)
Q Consensus        86 ~~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g  163 (255)
                      .+|++|+++++.+++++.+.+|++|+||||||...  +..+.+.++|++.+++|+.|+++++++++++|+       +.|
T Consensus        85 ~~D~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-------~~g  157 (283)
T 1g0o_A           85 KANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLE-------IGG  157 (283)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSC-------TTC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHh-------cCC
Confidence            99999999999999999999999999999999764  345678999999999999999999999999983       368


Q ss_pred             eEEEecCCccccccccCccCCCCCcccCCC-CccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          164 RIVNVSSEAHRFAYSEGIRFDKINDESAYN-SFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       164 ~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      +||++||..+..               +.+ +...|++||+++++|+++++.|+.++|  |+||+|+||+++|++.+.
T Consensus       158 ~iv~isS~~~~~---------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~  218 (283)
T 1g0o_A          158 RLILMGSITGQA---------------KAVPKHAVYSGSKGAIETFARCMAIDMADKK--ITVNVVAPGGIKTDMYHA  218 (283)
T ss_dssp             EEEEECCGGGTC---------------SSCSSCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCBSSHHHHH
T ss_pred             eEEEEechhhcc---------------CCCCCCcchHHHHHHHHHHHHHHHHHhcccC--eEEEEEecCcccchhhhh
Confidence            999999988765               222 367899999999999999999999988  999999999999998654

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1e-36  Score=256.86  Aligned_cols=193  Identities=27%  Similarity=0.346  Sum_probs=168.3

Q ss_pred             cccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           21 VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        21 ~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      |...+++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++     ..++.++++|++|+++++++++
T Consensus         4 m~~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~d~~~v~~~~~   78 (263)
T 3ak4_A            4 MAGIFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL-----ENGGFAVEVDVTKRASVDAAMQ   78 (263)
T ss_dssp             --CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----TTCCEEEECCTTCHHHHHHHHH
T ss_pred             cccCcCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hcCCeEEEEeCCCHHHHHHHHH
Confidence            33456788999999999999999999999999999999999987665554433     2267899999999999999999


Q ss_pred             HHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCeEEEecCCcccccc
Q 025275          101 EYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSR-EGRIVNVSSEAHRFAY  177 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~g~ii~vsS~~~~~~~  177 (255)
                      ++.+++|++|+||||||...  +..+.+.++|.+.+++|+.++++++++++|+|.+     .+ .|+||++||..+..  
T Consensus        79 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-----~~~~g~iv~isS~~~~~--  151 (263)
T 3ak4_A           79 KAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLA-----SNTKGVIVNTASLAAKV--  151 (263)
T ss_dssp             HHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCCCEEEEECCGGGTS--
T ss_pred             HHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCCeEEEEeccccccc--
Confidence            99999999999999999763  3456889999999999999999999999999987     33 68999999988765  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                   +.++...|+++|+++++|+++++.++.+.|  |++|+|+||+++|++...
T Consensus       152 -------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  199 (263)
T 3ak4_A          152 -------------GAPLLAHYSASKFAVFGWTQALAREMAPKN--IRVNCVCPGFVKTAMQER  199 (263)
T ss_dssp             -------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBTTHHHHH
T ss_pred             -------------CCCCchhHHHHHHHHHHHHHHHHHHHhHcC--eEEEEEecccccChhhhh
Confidence                         444678999999999999999999999888  999999999999998654

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=100.00  E-value=7.1e-37  Score=257.23  Aligned_cols=192  Identities=23%  Similarity=0.280  Sum_probs=170.5

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHH---cCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLAL---RGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~---~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      .++++|++|||||++|||++++++|++   +|++|++++|+.+.+++..+++.+..++.++.++++|++|+++++.++++
T Consensus         2 ~~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   81 (259)
T 1oaa_A            2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA   81 (259)
T ss_dssp             CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence            357899999999999999999999999   89999999999988888888887765566899999999999999999999


Q ss_pred             Hhc--CCCCee--EEEEccCCCC----CCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CCCeEEEecC
Q 025275          102 YNS--QGRPLN--ILINNAGIMA----SPFM-LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSS--REGRIVNVSS  170 (255)
Q Consensus       102 ~~~--~~g~id--~lv~~ag~~~----~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~--~~g~ii~vsS  170 (255)
                      +.+  .+|++|  +||||||+..    ++.+ .+.++|.+++++|+.|+++++++++|.|.+     +  +.|+||++||
T Consensus        82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----~~~~~g~iv~isS  156 (259)
T 1oaa_A           82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQD-----SPGLSKTVVNISS  156 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCC-----CTTCEEEEEEECC
T ss_pred             HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccCCCceEEEEcC
Confidence            988  678898  9999999753    2445 688999999999999999999999999975     3  4589999999


Q ss_pred             CccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          171 EAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      ..+..               +.++...|++||+++++|+++++.|+.  +  |+||+|+||+++|++.+.
T Consensus       157 ~~~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~--~--i~vn~v~PG~v~T~~~~~  207 (259)
T 1oaa_A          157 LCALQ---------------PYKGWGLYCAGKAARDMLYQVLAAEEP--S--VRVLSYAPGPLDNDMQQL  207 (259)
T ss_dssp             GGGTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHCT--T--EEEEEEECCSBSSHHHHH
T ss_pred             chhcC---------------CCCCccHHHHHHHHHHHHHHHHHhhCC--C--ceEEEecCCCcCcchHHH
Confidence            98775               455778999999999999999999996  3  999999999999998764

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.4e-36  Score=263.63  Aligned_cols=191  Identities=23%  Similarity=0.286  Sum_probs=160.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec-----cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN-----MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      |++++|++|||||+||||+++|++|+++|++|++++|+     .+.++++.+.+...  +.++.++++|++|++++++++
T Consensus         1 M~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~--~~~~~~~~~Dvtd~~~v~~~~   78 (324)
T 3u9l_A            1 MVMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDN--DVDLRTLELDVQSQVSVDRAI   78 (324)
T ss_dssp             ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHH
Confidence            35678999999999999999999999999999998886     33445555555444  567999999999999999999


Q ss_pred             HHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          100 SEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      +++.+++|++|+||||||+..  +..+.+.++|.+++++|+.|+++++++++|+|++     .+.|+||++||..+... 
T Consensus        79 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~-----~~~g~iV~isS~~~~~~-  152 (324)
T 3u9l_A           79 DQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRR-----QKHGLLIWISSSSSAGG-  152 (324)
T ss_dssp             HHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTSC-
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCEEEEEecchhccC-
Confidence            999999999999999999763  4567899999999999999999999999999987     45789999999987642 


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                                   +.++...|++||+++++|+++++.|+++.|  |++|+|+||+++|++.
T Consensus       153 -------------~~~~~~~Y~asKaa~~~~~~~la~el~~~g--I~v~~v~PG~v~t~~~  198 (324)
T 3u9l_A          153 -------------TPPYLAPYFAAKAAMDAIAVQYARELSRWG--IETSIIVPGAFTSGTN  198 (324)
T ss_dssp             -------------CCSSCHHHHHHHHHHHHHHHHHHHHHHTTT--EEEEEEEECCC-----
T ss_pred             -------------CCCcchhHHHHHHHHHHHHHHHHHHhhhhC--cEEEEEECCccccCch
Confidence                         234567899999999999999999999988  9999999999998764

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=100.00  E-value=8.9e-37  Score=259.11  Aligned_cols=192  Identities=29%  Similarity=0.322  Sum_probs=163.6

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhh-CCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE-IPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++... ..+.++.++++|++|+++++.+++++.+
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   82 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence            478899999999999999999999999999999999988888777777432 1245789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc-cccc
Q 025275          105 QGRPLNILINNAGIMA--SPFML----SKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH-RFAY  177 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~----~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~-~~~~  177 (255)
                      ++|++|+||||||...  +..+.    +.++|++.+++|+.++++++++++|.|+++      +|+||++||..+ ..  
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~------~g~iv~isS~~~~~~--  154 (278)
T 1spx_A           83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST------KGEIVNISSIASGLH--  154 (278)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------TCEEEEECCTTSSSS--
T ss_pred             HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc------CCeEEEEeccccccc--
Confidence            9999999999999763  33455    889999999999999999999999999862      389999999887 54  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                   +.++...|+++|+++++++++++.++.+.|  |++|+|+||+++|++...
T Consensus       155 -------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  202 (278)
T 1spx_A          155 -------------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHG--IRVNSISPGLVATGFGSA  202 (278)
T ss_dssp             -------------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCBCCCC---
T ss_pred             -------------CCCCccHHHHHHHHHHHHHHHHHHHHHhcC--cEEEEEecCcccCccccc
Confidence                         445678899999999999999999999888  999999999999998754

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=100.00  E-value=1.2e-36  Score=256.67  Aligned_cols=202  Identities=25%  Similarity=0.272  Sum_probs=175.3

Q ss_pred             cccccCCCCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchH-HHHHHHHHhhCCCCceEEEEeCCCCHHHH
Q 025275           19 EEVTQGIDGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAG-KDVREAIVKEIPSAKVDAMELDVSSLASV   95 (255)
Q Consensus        19 ~~~~~~~~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~si   95 (255)
                      ..++..+++++|++|||||+  +|||+++|++|+++|++|++++|+.+.. ++..+++.+.. +.++.++++|++|++++
T Consensus        10 ~~~~~~~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v   88 (267)
T 3gdg_A           10 ESLLDQLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESC   88 (267)
T ss_dssp             SSHHHHHCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHH
T ss_pred             cccccccCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHH
Confidence            33445678999999999999  9999999999999999999999987765 66777776543 56899999999999999


Q ss_pred             HHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275           96 RKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus        96 ~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                      +++++++.++++++|+||||||+..  ++.+.+.++|++.+++|+.++++++++++|+|++     .+.|+||++||..+
T Consensus        89 ~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~  163 (267)
T 3gdg_A           89 EKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKE-----RGTGSLVITASMSG  163 (267)
T ss_dssp             HHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCCEEEEECCGGG
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHH-----cCCceEEEEccccc
Confidence            9999999999999999999999874  3567889999999999999999999999999987     35789999999887


Q ss_pred             ccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          174 RFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      ....             ..++...|++||+++++|+++++.++.+.   |+||+|+||+++|++.+...
T Consensus       164 ~~~~-------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~---i~v~~v~PG~v~t~~~~~~~  216 (267)
T 3gdg_A          164 HIAN-------------FPQEQTSYNVAKAGCIHMARSLANEWRDF---ARVNSISPGYIDTGLSDFVP  216 (267)
T ss_dssp             TSCC-------------SSSCCHHHHHHHHHHHHHHHHHHHHTTTT---CEEEEEEECCEECSCGGGSC
T ss_pred             cccC-------------CCCCCCcchHHHHHHHHHHHHHHHHhccC---cEEEEEECCccccchhhhCC
Confidence            6521             11356789999999999999999999764   89999999999999987553

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=100.00  E-value=2.3e-36  Score=257.02  Aligned_cols=205  Identities=20%  Similarity=0.240  Sum_probs=172.3

Q ss_pred             CCcccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Q 025275           15 SSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLAS   94 (255)
Q Consensus        15 ~~~~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s   94 (255)
                      .+-+..|+.++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++++|++|+++
T Consensus        16 ~~gp~~m~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~   90 (281)
T 3ppi_A           16 TQGPGSMVTIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-----GNRAEFVSTNVTSEDS   90 (281)
T ss_dssp             --------CCGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHH
T ss_pred             ccCcchhhhhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEcCCCCHHH
Confidence            33444555677899999999999999999999999999999999999988887777766     4579999999999999


Q ss_pred             HHHHHHHHhcCCCCeeEEEEc-cCCCCC--C-----CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCeE
Q 025275           95 VRKFASEYNSQGRPLNILINN-AGIMAS--P-----FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQK-SSREGRI  165 (255)
Q Consensus        95 i~~~~~~~~~~~g~id~lv~~-ag~~~~--~-----~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~g~i  165 (255)
                      ++++++++ ++++++|++||| +|....  .     .+.+.++|.+.+++|+.+++++++++++.+.+.... .+..|+|
T Consensus        91 v~~~~~~~-~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~i  169 (281)
T 3ppi_A           91 VLAAIEAA-NQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGAL  169 (281)
T ss_dssp             HHHHHHHH-TTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEE
T ss_pred             HHHHHHHH-HHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence            99999999 788999999999 544321  1     257888999999999999999999999999763221 1357899


Q ss_pred             EEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          166 VNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       166 i~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      |++||..+..               +.++...|++||+|+++|+++++.|+.++|  |++|+|+||+|+|++.+...
T Consensus       170 v~isS~~~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~~~  229 (281)
T 3ppi_A          170 VLTASIAGYE---------------GQIGQTAYAAAKAGVIGLTIAAARDLSSAG--IRVNTIAPGTMKTPIMESVG  229 (281)
T ss_dssp             EEECCGGGTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHTTC
T ss_pred             EEEecccccC---------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcC--eEEEEEecCcCCchhhhccc
Confidence            9999999876               555778999999999999999999999988  99999999999999887643

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=100.00  E-value=4e-37  Score=260.09  Aligned_cols=183  Identities=23%  Similarity=0.234  Sum_probs=161.8

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .++++++|++|||||++|||+++|++|+++|++|++++|+.+.+             .....+++|++|.++++.+++++
T Consensus        22 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~-------------~~~~~~~~Dv~~~~~~~~~~~~~   88 (266)
T 3uxy_A           22 SMQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGI-------------AADLHLPGDLREAAYADGLPGAV   88 (266)
T ss_dssp             ----CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTS-------------CCSEECCCCTTSHHHHHHHHHHH
T ss_pred             hhhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-------------HhhhccCcCCCCHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999987642             12245689999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+++|++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|+|++     .+.|+||++||..+..     
T Consensus        89 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-----~~~g~iv~isS~~~~~-----  158 (266)
T 3uxy_A           89 AAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAA-----AGGGAIVNVASCWGLR-----  158 (266)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCSBTTB-----
T ss_pred             HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEECCHHhCC-----
Confidence            999999999999999874  4567899999999999999999999999999987     4578999999998776     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +.++...|++||+|+++|+++++.|+.++|  |+||+|+||+++|++.+.
T Consensus       159 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~  206 (266)
T 3uxy_A          159 ----------PGPGHALYCLTKAALASLTQCMGMDHAPQG--IRINAVCPNEVNTPMLRT  206 (266)
T ss_dssp             ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESSBCCHHHHH
T ss_pred             ----------CCCCChHHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEeeCCCcchHhhh
Confidence                      555778999999999999999999999998  999999999999998654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=100.00  E-value=1.8e-36  Score=257.70  Aligned_cols=194  Identities=18%  Similarity=0.166  Sum_probs=169.8

Q ss_pred             ccCCCCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      ..+.++++|++|||||+  +|||+++|++|+++|++|++++|+.  ..+..+++.+..  .++.++.+|++|++++++++
T Consensus        19 ~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~   94 (280)
T 3nrc_A           19 SHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEF--NPAAVLPCDVISDQEIKDLF   94 (280)
T ss_dssp             ---CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGG--CCSEEEECCTTCHHHHHHHH
T ss_pred             CcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhc--CCceEEEeecCCHHHHHHHH
Confidence            34567899999999988  7799999999999999999999997  455666666653  35899999999999999999


Q ss_pred             HHHhcCCCCeeEEEEccCCCCC------CCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          100 SEYNSQGRPLNILINNAGIMAS------PFM-LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~~------~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      +++.+.++++|+||||||+...      +.+ .+.++|.+.+++|+.+++++++++++.+.+      +.|+||++||..
T Consensus        95 ~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~------~~g~iv~isS~~  168 (280)
T 3nrc_A           95 VELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKN------RNASMVALTYIG  168 (280)
T ss_dssp             HHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT------TTCEEEEEECGG
T ss_pred             HHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCeEEEEeccc
Confidence            9999999999999999997642      223 788999999999999999999999999975      368999999998


Q ss_pred             cccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          173 HRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      +..               +.++...|+++|+|+++|+++++.|++++|  |+||+|+||+++|++.+...
T Consensus       169 ~~~---------------~~~~~~~Y~asKaal~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~~~  221 (280)
T 3nrc_A          169 AEK---------------AMPSYNTMGVAKASLEATVRYTALALGEDG--IKVNAVSAGPIKTLAASGIS  221 (280)
T ss_dssp             GTS---------------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCCCCSGGGGCT
T ss_pred             ccc---------------CCCCchhhHHHHHHHHHHHHHHHHHHHHcC--cEEEEEeeccccchhhhcCc
Confidence            776               555778999999999999999999999998  99999999999999977654

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=100.00  E-value=1.1e-36  Score=255.51  Aligned_cols=187  Identities=26%  Similarity=0.340  Sum_probs=168.3

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++     +.++.++++|++|+++++++++++.++
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999988777666655     447899999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  +..+.+.++|++.+++|+.++++++++++|.|++     .+ |+||++||..+..        
T Consensus        78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-----~~-g~iv~isS~~~~~--------  143 (253)
T 1hxh_A           78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE-----TG-GSIINMASVSSWL--------  143 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-----TC-EEEEEECCGGGTS--------
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHH-----cC-CEEEEEcchhhcC--------
Confidence            999999999999763  4567889999999999999999999999999976     33 8999999998775        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhC--CCcEEEEEeeCCceecCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKED--GVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~--~~~i~vn~v~PG~v~t~~~~~  240 (255)
                             +.++...|+++|+++++|+++++.|+.++  |  |++|+|+||+++|++...
T Consensus       144 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~g--i~v~~v~Pg~v~t~~~~~  193 (253)
T 1hxh_A          144 -------PIEQYAGYSASKAAVSALTRAAALSCRKQGYA--IRVNSIHPDGIYTPMMQA  193 (253)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCC--EEEEEEEESEECCHHHHH
T ss_pred             -------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCC--eEEEEEEeCCccCchhhh
Confidence                   44567899999999999999999999988  6  999999999999998664

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=100.00  E-value=1.5e-36  Score=263.89  Aligned_cols=194  Identities=19%  Similarity=0.191  Sum_probs=167.8

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEE-eccchHHHHHHHHHhhCCCCceEEEEeCCCCHH-----------
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV-RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLA-----------   93 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-----------   93 (255)
                      ++++|++|||||++|||+++|++|+++|++|++++ |+.+.+++..+++.... +.++.++++|++|++           
T Consensus        43 ~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~  121 (328)
T 2qhx_A           43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVATAPVSGADGSA  121 (328)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCC-------C
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-CCeEEEEEeeCCCchhcccccccccc
Confidence            47899999999999999999999999999999999 99888888888876332 457999999999999           


Q ss_pred             ------HHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCC--------------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 025275           94 ------SVRKFASEYNSQGRPLNILINNAGIMA--SPFMLS--------------KDNIELQFATNHLGHFLLTHLLLDT  151 (255)
Q Consensus        94 ------si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~--------------~~~~~~~~~~n~~~~~~~~~~~~~~  151 (255)
                            +++++++++.+++|++|+||||||+..  +..+.+              .++|.+.+++|+.++++++++++|.
T Consensus       122 ~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  201 (328)
T 2qhx_A          122 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR  201 (328)
T ss_dssp             CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  999999999999999999999999763  345566              8899999999999999999999999


Q ss_pred             HHHhhc-cCCCCCeEEEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeC
Q 025275          152 MKKTAQ-KSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHP  230 (255)
Q Consensus       152 ~~~~~~-~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~P  230 (255)
                      |.++.. .....|+||++||..+..               +.++...|+++|+++++|+++++.|+++.|  |+||+|+|
T Consensus       202 m~~~~~~~~~~~g~IV~isS~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~g--Irvn~v~P  264 (328)
T 2qhx_A          202 VAGTPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQ--IRVNGVGP  264 (328)
T ss_dssp             HHHSCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEE
T ss_pred             HHhcCCcCCCCCcEEEEECchhhcc---------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcC--cEEEEEec
Confidence            986210 001168999999998765               455778999999999999999999999988  99999999


Q ss_pred             CceecCc
Q 025275          231 GSIVTNL  237 (255)
Q Consensus       231 G~v~t~~  237 (255)
                      |+|+|++
T Consensus       265 G~v~T~~  271 (328)
T 2qhx_A          265 GLSVLVD  271 (328)
T ss_dssp             SSBSCCC
T ss_pred             CcccCCc
Confidence            9999998

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=100.00  E-value=6.5e-37  Score=257.26  Aligned_cols=192  Identities=22%  Similarity=0.218  Sum_probs=157.0

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .|++++|++|||||++|||+++|++|+++|++|++++|+.+..   .+++     +.++.++++|++|+++++.+++.+.
T Consensus         4 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~   75 (257)
T 3tl3_A            4 SMEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV---VADL-----GDRARFAAADVTDEAAVASALDLAE   75 (257)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHH---HHHT-----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHH---HHhc-----CCceEEEECCCCCHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999965432   2222     4578999999999999999999988


Q ss_pred             cCCCCeeEEEEccCCCCC------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCCeEEEecCCccc
Q 025275          104 SQGRPLNILINNAGIMAS------PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQK---SSREGRIVNVSSEAHR  174 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~------~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~~~~g~ii~vsS~~~~  174 (255)
                      + +|++|+||||||....      ..+.+.++|++.+++|+.++++++++++|+|.+....   .++.|+||++||..+.
T Consensus        76 ~-~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  154 (257)
T 3tl3_A           76 T-MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAF  154 (257)
T ss_dssp             H-HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--
T ss_pred             H-hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhc
Confidence            7 8999999999997632      2347899999999999999999999999999762111   1356899999999877


Q ss_pred             cccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          175 FAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      .               +.++...|++||+|+++|+++++.|++++|  |+||+|+||+|+|++.+..
T Consensus       155 ~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~~  204 (257)
T 3tl3_A          155 D---------------GQIGQAAYSASKGGVVGMTLPIARDLASHR--IRVMTIAPGLFDTPLLASL  204 (257)
T ss_dssp             C---------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCTTC---
T ss_pred             C---------------CCCCCccHHHHHHHHHHHHHHHHHHhcccC--cEEEEEEecCccChhhhhc
Confidence            6               344667999999999999999999999998  9999999999999998754

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=100.00  E-value=1.9e-36  Score=255.77  Aligned_cols=193  Identities=17%  Similarity=0.154  Sum_probs=164.5

Q ss_pred             ccCCCCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      .....+++|++|||||+  +|||+++|++|+++|++|++++|+. ...+..+++.+..  .++.++++|++|+++++.++
T Consensus         7 ~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~   83 (271)
T 3ek2_A            7 HHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD-RFKDRITEFAAEF--GSELVFPCDVADDAQIDALF   83 (271)
T ss_dssp             --CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG-GGHHHHHHHHHHT--TCCCEEECCTTCHHHHHHHH
T ss_pred             CCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch-hhHHHHHHHHHHc--CCcEEEECCCCCHHHHHHHH
Confidence            35567899999999999  9999999999999999999999995 4455566665553  35889999999999999999


Q ss_pred             HHHhcCCCCeeEEEEccCCCC------CCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          100 SEYNSQGRPLNILINNAGIMA------SPFM-LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~------~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      +++.+++|++|+||||||+..      ++.+ .+.++|.+.+++|+.++++++++++|+|++       .|+||++||..
T Consensus        84 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-------~g~iv~isS~~  156 (271)
T 3ek2_A           84 ASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSD-------DASLLTLSYLG  156 (271)
T ss_dssp             HHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEE-------EEEEEEEECGG
T ss_pred             HHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhcc-------CceEEEEeccc
Confidence            999999999999999999763      3344 889999999999999999999999998864       57999999998


Q ss_pred             cccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          173 HRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      +..               +.++...|++||+|+++|+++++.++.++|  |+||+|+||+|+|++.+..
T Consensus       157 ~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~~  208 (271)
T 3ek2_A          157 AER---------------AIPNYNTMGLAKAALEASVRYLAVSLGAKG--VRVNAISAGPIKTLAASGI  208 (271)
T ss_dssp             GTS---------------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEEECCC-----CCC
T ss_pred             ccc---------------CCCCccchhHHHHHHHHHHHHHHHHHHhcC--cEEEEEecCcccchhhhcc
Confidence            776               555778999999999999999999999988  9999999999999987654

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=1.7e-36  Score=256.65  Aligned_cols=188  Identities=26%  Similarity=0.362  Sum_probs=166.3

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ..++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++      .++.++++|++|+++++++++++.
T Consensus         4 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~~   77 (270)
T 1yde_A            4 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETI   77 (270)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------cCCeEEEcCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999987765554433      147899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          104 SQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      +++|++|+||||||...   ++.+.+.++|++.+++|+.++++++++++|+|.+.      .|+||++||..+..     
T Consensus        78 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~------~g~iv~isS~~~~~-----  146 (270)
T 1yde_A           78 RRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS------QGNVINISSLVGAI-----  146 (270)
T ss_dssp             HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------TCEEEEECCHHHHH-----
T ss_pred             HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC------CCEEEEEcCccccC-----
Confidence            99999999999999753   34567889999999999999999999999999762      58999999988766     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +.++...|+++|+++++++++++.|+.++|  |++|+|+||+++|++.+.
T Consensus       147 ----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~vn~v~Pg~v~t~~~~~  194 (270)
T 1yde_A          147 ----------GQAQAVPYVATKGAVTAMTKALALDESPYG--VRVNCISPGNIWTPLWEE  194 (270)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBCCHHHHH
T ss_pred             ----------CCCCCcccHHHHHHHHHHHHHHHHHhhhhC--cEEEEEEeCccccchhhh
Confidence                      444668899999999999999999999988  999999999999998654

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.7e-36  Score=255.36  Aligned_cols=186  Identities=20%  Similarity=0.278  Sum_probs=164.4

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ++++++|++|||||++|||+++|++|+++|++|++++|+.+...           ..++.++++|++|+++++++++++.
T Consensus        23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dv~d~~~v~~~~~~~~   91 (260)
T 3un1_A           23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA-----------DPDIHTVAGDISKPETADRIVREGI   91 (260)
T ss_dssp             HHHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS-----------STTEEEEESCTTSHHHHHHHHHHHH
T ss_pred             hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-----------cCceEEEEccCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999876421           2368999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +++|++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+     .+.|+||++||..+....    
T Consensus        92 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-----~~~g~iv~isS~~~~~~~----  162 (260)
T 3un1_A           92 ERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLK-----QGSGHIVSITTSLVDQPM----  162 (260)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCEEEEEECCTTTTSCB----
T ss_pred             HHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCcEEEEEechhhccCC----
Confidence            99999999999999864  3567899999999999999999999999999987     567899999998764311    


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +..+...|++||+++++|+++++.+++++|  |+||+|+||+++|++...
T Consensus       163 ---------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~g--I~vn~v~PG~v~t~~~~~  210 (260)
T 3un1_A          163 ---------VGMPSALASLTKGGLNAVTRSLAMEFSRSG--VRVNAVSPGVIKTPMHPA  210 (260)
T ss_dssp             ---------TTCCCHHHHHHHHHHHHHHHHHHHHTTTTT--EEEEEEEECCBCCTTSCG
T ss_pred             ---------CCCccHHHHHHHHHHHHHHHHHHHHhCcCC--eEEEEEeecCCCCCCCCH
Confidence                     233557899999999999999999999988  999999999999998653

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=100.00  E-value=2.4e-36  Score=250.32  Aligned_cols=190  Identities=23%  Similarity=0.284  Sum_probs=166.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++|++|||||++|||++++++|+++|++|++++|+.+++++..+++.+.. +.++.++++|++|+++++++++++.+++|
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999999999999999999888888886433 56899999999999999999999999999


Q ss_pred             CeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          108 PLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       108 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      ++|+||||||...  +..+.+.++|.+.+++|+.|+++++++++|+|++      ..+++|+++|..+..          
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~------~~~~ii~~sS~~~~~----------  143 (235)
T 3l77_A           80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKR------TGGLALVTTSDVSAR----------  143 (235)
T ss_dssp             SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------HTCEEEEECCGGGSS----------
T ss_pred             CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCcEEEEecchhcc----------
Confidence            9999999999864  4567899999999999999999999999999964      367999999988765          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                           +.+....|+++|+++++|+++++  +...+  |++|+|+||+++|++.+....
T Consensus       144 -----~~~~~~~Y~~sKaa~~~~~~~l~--~~~~~--i~v~~v~PG~v~T~~~~~~~~  192 (235)
T 3l77_A          144 -----LIPYGGGYVSTKWAARALVRTFQ--IENPD--VRFFELRPGAVDTYFGGSKPG  192 (235)
T ss_dssp             -----CCTTCHHHHHHHHHHHHHHHHHH--HHCTT--SEEEEEEECSBSSSTTTCCSC
T ss_pred             -----cCCCcchHHHHHHHHHHHHHHHh--hcCCC--eEEEEEeCCccccccccccCC
Confidence                 44566789999999999999994  44556  999999999999999876544

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=100.00  E-value=3e-36  Score=253.87  Aligned_cols=196  Identities=22%  Similarity=0.302  Sum_probs=165.1

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++.+|++|||||++|||++++++|+++|++|++++|+.+...+...+..... +.++.++++|++|+++++++++++.+
T Consensus         3 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~   81 (264)
T 3i4f_A            3 LGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDV-EERLQFVQADVTKKEDLHKIVEEAMS   81 (264)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGG-GGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999887665444444433322 45799999999999999999999999


Q ss_pred             CCCCeeEEEEccCC--C--CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          105 QGRPLNILINNAGI--M--ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       105 ~~g~id~lv~~ag~--~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      +++++|+||||||.  .  .+..+.+.++|.+.+++|+.++++++++++|+|++     .+.|+||++||.....     
T Consensus        82 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----~~~g~iv~iss~~~~~-----  151 (264)
T 3i4f_A           82 HFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRK-----QNFGRIINYGFQGADS-----  151 (264)
T ss_dssp             HHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCTTGGG-----
T ss_pred             HhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHh-----cCCCeEEEEeechhcc-----
Confidence            99999999999994  3  23456889999999999999999999999999987     3568999999974321     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              ..+.++...|+++|+++++|+++++.++.++|  |++|+|+||+++|++.+..
T Consensus       152 --------~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~  202 (264)
T 3i4f_A          152 --------APGWIYRSAFAAAKVGLVSLTKTVAYEEAEYG--ITANMVCPGDIIGEMKEAT  202 (264)
T ss_dssp             --------CCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCCCGGGGSCC
T ss_pred             --------cCCCCCCchhHHHHHHHHHHHHHHHHHhhhcC--cEEEEEccCCccCccchhc
Confidence                    11445678999999999999999999999988  9999999999999987654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=100.00  E-value=2e-36  Score=259.97  Aligned_cols=209  Identities=25%  Similarity=0.315  Sum_probs=171.5

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCH-HHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL-ASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~si~~~~~~~~  103 (255)
                      ..+++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+.. +.++.++.+|++|+ ++++.+++++.
T Consensus         8 ~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~   86 (311)
T 3o26_A            8 TVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIK   86 (311)
T ss_dssp             ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999999999999998887653 45799999999998 99999999999


Q ss_pred             cCCCCeeEEEEccCCCC--------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 025275          104 SQGRPLNILINNAGIMA--------------------------------SPFMLSKDNIELQFATNHLGHFLLTHLLLDT  151 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--------------------------------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  151 (255)
                      ++++++|+||||||+..                                +..+.+.+++++.+++|+.|+++++++++|+
T Consensus        87 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~  166 (311)
T 3o26_A           87 THFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPL  166 (311)
T ss_dssp             HHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHh
Confidence            99999999999999763                                2235678899999999999999999999999


Q ss_pred             HHHhhccCCCCCeEEEecCCccccccccCc----------cC-----------------CCCCcccCC-CCccchHHhHH
Q 025275          152 MKKTAQKSSREGRIVNVSSEAHRFAYSEGI----------RF-----------------DKINDESAY-NSFGAYGQSKL  203 (255)
Q Consensus       152 ~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~----------~~-----------------~~~~~~~~~-~~~~~Y~~sKa  203 (255)
                      |++     .+.|+||++||..+........          .+                 .......++ ++...|++||+
T Consensus       167 l~~-----~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~  241 (311)
T 3o26_A          167 LQL-----SDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKA  241 (311)
T ss_dssp             HTT-----SSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHH
T ss_pred             hcc-----CCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHH
Confidence            986     4578999999998876432100          00                 001111122 35578999999


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       204 a~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                      ++++|+++++.++.+    |+||+|+||+|+|++.+..+.
T Consensus       242 a~~~~~~~la~e~~~----i~v~~v~PG~v~T~~~~~~~~  277 (311)
T 3o26_A          242 CLNAYTRVLANKIPK----FQVNCVCPGLVKTEMNYGIGN  277 (311)
T ss_dssp             HHHHHHHHHHHHCTT----SEEEEECCCSBCSGGGTTCCS
T ss_pred             HHHHHHHHHHhhcCC----ceEEEecCCceecCCcCCCCC
Confidence            999999999999853    999999999999999876554

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=100.00  E-value=2.9e-36  Score=255.80  Aligned_cols=189  Identities=17%  Similarity=0.154  Sum_probs=167.3

Q ss_pred             CCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           26 DGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        26 ~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ++++|++|||||+  +|||++++++|+++|++|++++|+.+ .++..+++.+..+  .+.++++|++|+++++.+++++.
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~   79 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVK   79 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcC--CcEEEEcCCCCHHHHHHHHHHHH
Confidence            4778999999999  99999999999999999999999986 5666666665432  47899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          104 SQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      +++|++|+||||||...      ++.+.+.++|.+.+++|+.++++++++++|.|++       +|+||++||..+..  
T Consensus        80 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-------~g~iv~isS~~~~~--  150 (275)
T 2pd4_A           80 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN-------GASVLTLSYLGSTK--  150 (275)
T ss_dssp             HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-------EEEEEEEECGGGTS--
T ss_pred             HHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc-------CCEEEEEecchhcC--
Confidence            99999999999999763      3457889999999999999999999999999853       47999999988765  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                   +.++...|++||+++++|+++++.+++++|  |+||+|+||+++|++.+..
T Consensus       151 -------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~~  199 (275)
T 2pd4_A          151 -------------YMAHYNVMGLAKAALESAVRYLAVDLGKHH--IRVNALSAGPIRTLASSGI  199 (275)
T ss_dssp             -------------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEEECCCCCTTGGGS
T ss_pred             -------------CCCCchhhHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeeCccccchhhhc
Confidence                         445678899999999999999999999988  9999999999999987653

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=100.00  E-value=1.3e-35  Score=249.17  Aligned_cols=195  Identities=26%  Similarity=0.277  Sum_probs=171.7

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++...  +.++.++++|++|+++++.+++++
T Consensus         7 ~~~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~   84 (260)
T 3awd_A            7 EKLRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRME--GHDVSSVVMDVTNTESVQNAVRSV   84 (260)
T ss_dssp             GGGCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999988887777777664  557999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          103 NSQGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      .++++++|+||||||...   +..+.+.++|.+.+++|+.+++++++++++.|.+     .+.++||++||..+....+ 
T Consensus        85 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~iv~~sS~~~~~~~~-  158 (260)
T 3awd_A           85 HEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLE-----QKQGVIVAIGSMSGLIVNR-  158 (260)
T ss_dssp             HHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTSCCS-
T ss_pred             HHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhh-----cCCCEEEEEecchhcccCC-
Confidence            999999999999999754   3456788999999999999999999999999986     3468999999988765211 


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                  ..+...|+++|++++.++++++.++.+.|  |++|+|+||+++|++.+
T Consensus       159 ------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~g--i~v~~v~pg~v~t~~~~  204 (260)
T 3awd_A          159 ------------PQQQAAYNASKAGVHQYIRSLAAEWAPHG--IRANAVAPTYIETTLTR  204 (260)
T ss_dssp             ------------SSCCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCCTTTH
T ss_pred             ------------CCCccccHHHHHHHHHHHHHHHHHhhhcC--eEEEEEEeeeeccchhh
Confidence                        11237899999999999999999999888  99999999999999876

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=100.00  E-value=5.6e-36  Score=253.56  Aligned_cols=193  Identities=31%  Similarity=0.347  Sum_probs=164.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++|++|||||++|||+++|++|+++|++|+++ .|+.+.+++..+++...  +.++.++.+|++|+++++++++++.+++
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES--GGEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            57999999999999999999999999999887 67777777777777665  5689999999999999999999999999


Q ss_pred             CCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          107 RPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       107 g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +++|+||||||...   +..+.+.++|.+.+++|+.|+++++++++|.|.+..  .++.|+||++||..+..+       
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~~g~iv~isS~~~~~~-------  173 (272)
T 4e3z_A          103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLY--SGQGGAIVNVSSMAAILG-------  173 (272)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGG--TCCCEEEEEECCTHHHHC-------
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc--cCCCCEEEEEcchHhccC-------
Confidence            99999999999763   345678999999999999999999999999997632  135689999999988762       


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                             .......|++||+++++|+++++.++.++|  |++|+|+||+++|++...
T Consensus       174 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~  221 (272)
T 4e3z_A          174 -------SATQYVDYAASKAAIDTFTIGLAREVAAEG--IRVNAVRPGIIETDLHAS  221 (272)
T ss_dssp             -------CTTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBC------
T ss_pred             -------CCCCcchhHHHHHHHHHHHHHHHHHHHHcC--cEEEEEecCCCcCCcccc
Confidence                   112456799999999999999999999988  999999999999998765

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=100.00  E-value=1.3e-35  Score=248.50  Aligned_cols=182  Identities=30%  Similarity=0.377  Sum_probs=157.5

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |++++|++|||||++|||++++++|+++|++|++++|+.+.         ..  . .+.++.+|++|+++++++++++.+
T Consensus         3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~---------~~--~-~~~~~~~D~~d~~~~~~~~~~~~~   70 (250)
T 2fwm_X            3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ---------EQ--Y-PFATEVMDVADAAQVAQVCQRLLA   70 (250)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS---------SC--C-SSEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh---------hc--C-CceEEEcCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999998752         11  1 278899999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|+||||||...  +..+.+.++|++.+++|+.++++++++++|+|++     .+.|+||++||..+..       
T Consensus        71 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~-----~~~g~iv~isS~~~~~-------  138 (250)
T 2fwm_X           71 ETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRR-----QRGGAIVTVASDAAHT-------  138 (250)
T ss_dssp             HCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCCEEEEECCGGGTS-------
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHh-----cCCCEEEEECchhhCC-------
Confidence            9999999999999763  4567889999999999999999999999999987     3468999999998765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|+++++|+++++.|+++.|  |++|+|+||+++|++.+.
T Consensus       139 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  186 (250)
T 2fwm_X          139 --------PRIGMSAYGASKAALKSLALSVGLELAGSG--VRCNVVSPGSTDTDMQRT  186 (250)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCC-------
T ss_pred             --------CCCCCchHHHHHHHHHHHHHHHHHHhCccC--CEEEEEECCcccCccccc
Confidence                    455678999999999999999999999988  999999999999998754

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=100.00  E-value=6e-36  Score=253.72  Aligned_cols=193  Identities=18%  Similarity=0.171  Sum_probs=162.3

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-ccchHHHHHHHHHhhCCCCceEEEEeCCCCH----HHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDVSSL----ASVRKFAS  100 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~----~si~~~~~  100 (255)
                      ++++|++|||||++|||++++++|+++|++|++++| +.+.+++..+++.+.. +.++.++++|++|+    ++++.+++
T Consensus         8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (276)
T 1mxh_A            8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIID   86 (276)
T ss_dssp             ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHH
Confidence            367899999999999999999999999999999999 8888888887776542 34789999999999    99999999


Q ss_pred             HHhcCCCCeeEEEEccCCCC--CCCCCCh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEE
Q 025275          101 EYNSQGRPLNILINNAGIMA--SPFMLSK-----------DNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVN  167 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~--~~~~~~~-----------~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~  167 (255)
                      ++.+.+|++|+||||||+..  +..+.+.           ++|.+.+++|+.++++++++++|+|.+........|+||+
T Consensus        87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~  166 (276)
T 1mxh_A           87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN  166 (276)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred             HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence            99999999999999999763  3455666           8999999999999999999999998631001122389999


Q ss_pred             ecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          168 VSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       168 vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      +||..+..               +.++...|++||+++++|+++++.++.++|  |++|+|+||+++|+
T Consensus       167 isS~~~~~---------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~g--i~v~~v~PG~v~t~  218 (276)
T 1mxh_A          167 LCDAMTDL---------------PLPGFCVYTMAKHALGGLTRAAALELAPRH--IRVNAVAPGLSLLP  218 (276)
T ss_dssp             ECCGGGGS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESSBSCC
T ss_pred             ECchhhcC---------------CCCCCeehHHHHHHHHHHHHHHHHHHhhcC--eEEEEEecCcccCC
Confidence            99998776               455778999999999999999999999988  99999999999999

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=100.00  E-value=1.1e-36  Score=260.39  Aligned_cols=201  Identities=43%  Similarity=0.579  Sum_probs=168.3

Q ss_pred             ccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ..+++++||++|||||++|||++++++|+++|++|++++|+.+++++..+++     +.++.++++|++|++++++++++
T Consensus         9 ~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~   83 (291)
T 3rd5_A            9 ADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADG   83 (291)
T ss_dssp             GGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHT
T ss_pred             hhccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHh
Confidence            3457789999999999999999999999999999999999988766655543     45899999999999999999887


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +    +++|+||||||+..+..+.+.++|++++++|+.|+++++++++|.+.+         +||++||..+..+.....
T Consensus        84 ~----~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~---------riv~isS~~~~~~~~~~~  150 (291)
T 3rd5_A           84 V----SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD---------RVVTVSSMAHWPGRINLE  150 (291)
T ss_dssp             C----CCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE---------EEEEECCGGGTTCCCCSS
T ss_pred             c----CCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------heeEeechhhccCCCCcc
Confidence            6    689999999999877677788999999999999999999999999864         999999998876433211


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      +.  ..+..+.++...|++||+++++|++.++.++.++|.+|++|+|+||+|+|++.+...
T Consensus       151 ~~--~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~  209 (291)
T 3rd5_A          151 DL--NWRSRRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASG  209 (291)
T ss_dssp             CT--TCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC-----
T ss_pred             cc--cccccCCCCcchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccc
Confidence            11  112235567788999999999999999999998877799999999999999988754

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=100.00  E-value=1.4e-35  Score=252.90  Aligned_cols=195  Identities=30%  Similarity=0.332  Sum_probs=170.6

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++++++++
T Consensus        38 ~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~  115 (285)
T 2c07_A           38 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKI  115 (285)
T ss_dssp             CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCceeEEECCCCCHHHHHHHHHHH
Confidence            446788999999999999999999999999999999999988888877777654  557899999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+.++++|+||||||...  +..+.+.+++.+.+++|+.+++++++++++.+.+     .+.++||++||..+..     
T Consensus       116 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~-----  185 (285)
T 2c07_A          116 LTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMIN-----NRYGRIINISSIVGLT-----  185 (285)
T ss_dssp             HHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----HTCEEEEEECCTHHHH-----
T ss_pred             HHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----CCCCEEEEECChhhcc-----
Confidence            999999999999999764  3566789999999999999999999999999986     3468999999998776     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                +.++...|+++|++++.++++++.++.+.|  |++|+|+||+++|++....
T Consensus       186 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~~  234 (285)
T 2c07_A          186 ----------GNVGQANYSSSKAGVIGFTKSLAKELASRN--ITVNAIAPGFISSDMTDKI  234 (285)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCC-----C
T ss_pred             ----------CCCCCchHHHHHHHHHHHHHHHHHHHHHhC--cEEEEEEeCcEecCchhhc
Confidence                      444678999999999999999999999888  9999999999999987643

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=100.00  E-value=1.7e-36  Score=255.77  Aligned_cols=186  Identities=26%  Similarity=0.270  Sum_probs=162.3

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++     ..++.++++|++|+++++.+++++.++
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAVEAVFAEALEE   77 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999987766555443     246889999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  +..+.+.++|++.+++|+.++++++++++|+| +     + .|+||++||..+. +.      
T Consensus        78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~-----~-~g~iv~isS~~~~-~~------  143 (263)
T 2a4k_A           78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL-E-----E-GGSLVLTGSVAGL-GA------  143 (263)
T ss_dssp             HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-C-----T-TCEEEEECCCTTC-CH------
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHH-h-----c-CCEEEEEecchhc-CC------
Confidence            999999999999764  35678899999999999999999999999999 5     3 6899999998865 22      


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               ++...|+++|+++++|+++++.|+.++|  |++|+|+||+++|++.+..
T Consensus       144 ---------~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~  190 (263)
T 2a4k_A          144 ---------FGLAHYAAGKLGVVGLARTLALELARKG--VRVNVLLPGLIQTPMTAGL  190 (263)
T ss_dssp             ---------HHHHHHHHCSSHHHHHHHHHHHHHTTTT--CEEEEEEECSBCCGGGTTS
T ss_pred             ---------CCcHHHHHHHHHHHHHHHHHHHHhhhhC--cEEEEEEeCcCcCchhhhc
Confidence                     2457899999999999999999999888  9999999999999987654

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=100.00  E-value=4.6e-36  Score=253.20  Aligned_cols=188  Identities=14%  Similarity=0.179  Sum_probs=165.4

Q ss_pred             CCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++|++|||||+  +|||++++++|+++|++|++++|+. ..++..+++.+..+  ...++++|++|+++++++++++.+
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~   83 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELGK   83 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcC--CcEEEEccCCCHHHHHHHHHHHHH
Confidence            789999999999  9999999999999999999999987 55666666665432  347899999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC------CCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          105 QGRPLNILINNAGIMA------SPFM-LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~------~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      ++|++|+||||||...      ++.+ .+.++|++.+++|+.++++++++++|+|.+       +|+||++||..+..  
T Consensus        84 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-------~g~iv~isS~~~~~--  154 (265)
T 1qsg_A           84 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP-------GSALLTLSYLGAER--  154 (265)
T ss_dssp             TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-------EEEEEEEECGGGTS--
T ss_pred             HcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc-------CCEEEEEcchhhcc--
Confidence            9999999999999764      2345 788999999999999999999999998853       47999999988765  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                   +.++...|+++|+++++|+++++.+++++|  |++|+|+||+++|++.+..
T Consensus       155 -------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~  203 (265)
T 1qsg_A          155 -------------AIPNYNVMGLAKASLEANVRYMANAMGPEG--VRVNAISAGPIRTLAASGI  203 (265)
T ss_dssp             -------------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTT--EEEEEEEECCCCCTTGGGS
T ss_pred             -------------CCCCchHHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEEeCCCccchhhcc
Confidence                         445677899999999999999999999888  9999999999999987643

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=100.00  E-value=1.9e-36  Score=254.16  Aligned_cols=187  Identities=25%  Similarity=0.311  Sum_probs=154.7

Q ss_pred             ccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           20 EVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        20 ~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      .+...+++++|++|||||++|||++++++|+++|++|++++|+.+.++             .+.++++|++|++++++++
T Consensus        12 ~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~Dl~d~~~v~~~~   78 (253)
T 2nm0_A           12 SGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE-------------GFLAVKCDITDTEQVEQAY   78 (253)
T ss_dssp             --------CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-------------TSEEEECCTTSHHHHHHHH
T ss_pred             CCCCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc-------------cceEEEecCCCHHHHHHHH
Confidence            344556788999999999999999999999999999999999876531             3688999999999999999


Q ss_pred             HHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          100 SEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      +++.++++++|+||||||...  +..+.+.++|++.+++|+.++++++++++|.|.+     .+.|+||++||..+..  
T Consensus        79 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-----~~~g~iv~isS~~~~~--  151 (253)
T 2nm0_A           79 KEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLR-----AKKGRVVLISSVVGLL--  151 (253)
T ss_dssp             HHHHHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHH-----HTCEEEEEECCCCCCC--
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCEEEEECchhhCC--
Confidence            999999999999999999763  3456788999999999999999999999999987     3468999999988765  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                   +.++...|+++|+++++|+++++.|+.++|  |++|+|+||+++|++.+..
T Consensus       152 -------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~~  200 (253)
T 2nm0_A          152 -------------GSAGQANYAASKAGLVGFARSLARELGSRN--ITFNVVAPGFVDTDMTKVL  200 (253)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHHHHHHHCSSS--EEEEEEEECSBCC------
T ss_pred             -------------CCCCcHHHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEEeCcCcCcchhhc
Confidence                         233567899999999999999999999888  9999999999999987643

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=100.00  E-value=3.1e-36  Score=253.78  Aligned_cols=189  Identities=16%  Similarity=0.175  Sum_probs=166.4

Q ss_pred             CCCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        25 ~~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +++++|++|||||+  +|||++++++|+++|++|++++|+.+ .++..+++.+..+  .+.++++|++|+++++.+++++
T Consensus         4 ~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~   80 (261)
T 2wyu_A            4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALG--GALLFRADVTQDEELDALFAGV   80 (261)
T ss_dssp             ECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHH
Confidence            46789999999999  99999999999999999999999875 5555666655432  3789999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275          103 NSQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      .+++|++|+||||||...      ++.+.+.++|++.+++|+.++++++++++|.|++       +|+||++||..+.. 
T Consensus        81 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-------~g~iv~isS~~~~~-  152 (261)
T 2wyu_A           81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE-------GGGIVTLTYYASEK-  152 (261)
T ss_dssp             HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE-------EEEEEEEECGGGTS-
T ss_pred             HHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhcc-------CCEEEEEecccccC-
Confidence            999999999999999763      3456889999999999999999999999998853       47999999988765 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                    +.++...|+++|+++++++++++.+++++|  |++|+|+||+++|++.+.
T Consensus       153 --------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  200 (261)
T 2wyu_A          153 --------------VVPKYNVMAIAKAALEASVRYLAYELGPKG--VRVNAISAGPVRTVAARS  200 (261)
T ss_dssp             --------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCCCCTGGGG
T ss_pred             --------------CCCCchHHHHHHHHHHHHHHHHHHHHhhhC--cEEEEEeeCCCcCchhhh
Confidence                          445677899999999999999999999988  999999999999998654

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=100.00  E-value=1.6e-35  Score=249.21  Aligned_cols=195  Identities=22%  Similarity=0.275  Sum_probs=167.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++     +.++.++++|++|+++++++++++.+
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKDVQTALALAKG   82 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            5688999999999999999999999999999999999998887776665     45789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCCC--CC------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCeEEEecCCcccc
Q 025275          105 QGRPLNILINNAGIMAS--PF------MLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQK-SSREGRIVNVSSEAHRF  175 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~--~~------~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~g~ii~vsS~~~~~  175 (255)
                      +++++|+||||||....  ..      +.+.++|.+.+++|+.+++++++++++.|.++... ..+.++||++||..+..
T Consensus        83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  162 (265)
T 2o23_A           83 KFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE  162 (265)
T ss_dssp             HHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred             HCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcC
Confidence            99999999999997643  22      36889999999999999999999999999762110 01568999999998775


Q ss_pred             ccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          176 AYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                     +.++...|+++|+++++++++++.++.+.|  |++|+|+||+++|++.+..
T Consensus       163 ---------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~~  211 (265)
T 2o23_A          163 ---------------GQVGQAAYSASKGGIVGMTLPIARDLAPIG--IRVMTIAPGLFGTPLLTSL  211 (265)
T ss_dssp             ---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCCC-----
T ss_pred             ---------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcC--cEEEEEEeccccCcccccc
Confidence                           445678999999999999999999999888  9999999999999987653

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=100.00  E-value=1.4e-35  Score=249.90  Aligned_cols=194  Identities=26%  Similarity=0.249  Sum_probs=160.4

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++.+++++
T Consensus         8 ~~~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~   85 (266)
T 1xq1_A            8 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTV   85 (266)
T ss_dssp             CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHH
Confidence            446788999999999999999999999999999999999988888888777665  557899999999999999999999


Q ss_pred             hcCC-CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          103 NSQG-RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       103 ~~~~-g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      .+.+ +++|+||||||...  +..+.+.++|.+.+++|+.++++++++++|.|++     .+.++||++||..+..    
T Consensus        86 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~----  156 (266)
T 1xq1_A           86 SSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKA-----SGCGNIIFMSSIAGVV----  156 (266)
T ss_dssp             HHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSSCEEEEEC----------
T ss_pred             HHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEEccchhcc----
Confidence            9888 89999999999763  3456789999999999999999999999999986     3468999999988765    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                 +.++...|+++|++++.++++++.++.++|  |++|+|+||++.|++.+.
T Consensus       157 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  204 (266)
T 1xq1_A          157 -----------SASVGSIYSATKGALNQLARNLACEWASDG--IRANAVAPAVIATPLAEA  204 (266)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEECCSCC------
T ss_pred             -----------CCCCCchHHHHHHHHHHHHHHHHHHHhHhC--cEEEEEeeCCCccchhhh
Confidence                       344667899999999999999999999888  999999999999998664

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=100.00  E-value=1.1e-35  Score=253.50  Aligned_cols=189  Identities=18%  Similarity=0.189  Sum_probs=165.9

Q ss_pred             CCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           26 DGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        26 ~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++|++|||||+  +|||++++++|+++|++|++++|+.+ .++..+++....+  .+.++++|++|+++++.+++++.
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~   94 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFG--SDLVVKCDVSLDEDIKNLKKFLE   94 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHH
Confidence            3789999999999  99999999999999999999999875 5566666665432  37899999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          104 SQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      +++|++|+||||||...      ++.+.+.++|.+.+++|+.|+++++++++|.|.+      ++|+||++||..+..  
T Consensus        95 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~------~~g~iv~isS~~~~~--  166 (285)
T 2p91_A           95 ENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEG------RNGAIVTLSYYGAEK--  166 (285)
T ss_dssp             HHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTT------SCCEEEEEECGGGTS--
T ss_pred             HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH------cCCEEEEEccchhcc--
Confidence            99999999999999763      3446889999999999999999999999999864      258999999988765  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                   +.++...|++||+++++|+++++.+++++|  |+||+|+||+++|++.+.
T Consensus       167 -------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~  214 (285)
T 2p91_A          167 -------------VVPHYNVMGIAKAALESTVRYLAYDIAKHG--HRINAISAGPVKTLAAYS  214 (285)
T ss_dssp             -------------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEEECCCCCSCC--
T ss_pred             -------------CCCCccHHHHHHHHHHHHHHHHHHHhcccC--cEEEEEEeCcccCchhhc
Confidence                         445677899999999999999999999888  999999999999998654

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=100.00  E-value=9.9e-36  Score=248.79  Aligned_cols=183  Identities=26%  Similarity=0.361  Sum_probs=158.3

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++|++|||||++|||++++++|+++|++|++++|+.+.++             .+..+++|++|+++++.+++++.
T Consensus        10 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~D~~~~~~~~~~~~~~~   76 (247)
T 1uzm_A           10 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-------------GLFGVEVDVTDSDAVDRAFTAVE   76 (247)
T ss_dssp             CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-------------TSEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH-------------HhcCeeccCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999876532             12248899999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      ++++++|+||||||...  +..+.+.++|++++++|+.++++++++++|+|++     .+.|+||++||..+..      
T Consensus        77 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~------  145 (247)
T 1uzm_A           77 EHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQR-----NKFGRMIFIGSVSGLW------  145 (247)
T ss_dssp             HHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCC--------
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----CCCCEEEEECCHhhcc------
Confidence            99999999999999764  3467889999999999999999999999999987     4568999999998776      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++...|+++|+++++|+++++.|+.++|  |++|+|+||+++|++.+..
T Consensus       146 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~  194 (247)
T 1uzm_A          146 ---------GIGNQANYAASKAGVIGMARSIARELSKAN--VTANVVAPGYIDTDMTRAL  194 (247)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHHS
T ss_pred             ---------CCCCChhHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEEeCCCcccchhhc
Confidence                     344678999999999999999999999988  9999999999999987643

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=100.00  E-value=2e-35  Score=245.92  Aligned_cols=190  Identities=23%  Similarity=0.331  Sum_probs=170.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-------eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-------HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-------~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      ++|++|||||+||||++++++|+++|+       +|++++|+.+.+++..+++...  +.++.++.+|++|+++++.+++
T Consensus         1 ~~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~   78 (244)
T 2bd0_A            1 MKHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTT   78 (244)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHH
Confidence            368999999999999999999999999       9999999988887777777654  5578999999999999999999


Q ss_pred             HHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          101 EYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      ++.++++++|+||||||...  +..+.+.++|.+.+++|+.++++++++++|+|.+     .+.++||++||..+..   
T Consensus        79 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~---  150 (244)
T 2bd0_A           79 HIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMER-----QHSGHIFFITSVAATK---  150 (244)
T ss_dssp             HHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS---
T ss_pred             HHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----CCCCEEEEEecchhcC---
Confidence            99999999999999999763  3456788999999999999999999999999986     3468999999998765   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                  +.++...|+++|+++++++++++.++.+.|  |++|+|+||+++|++....
T Consensus       151 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~~  199 (244)
T 2bd0_A          151 ------------AFRHSSIYCMSKFGQRGLVETMRLYARKCN--VRITDVQPGAVYTPMWGKV  199 (244)
T ss_dssp             ------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTT--EEEEEEEECCBCSTTTCCC
T ss_pred             ------------CCCCCchhHHHHHHHHHHHHHHHHHhhccC--cEEEEEECCCccchhhhhc
Confidence                        445678999999999999999999999888  9999999999999987654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=100.00  E-value=1.3e-35  Score=247.91  Aligned_cols=191  Identities=28%  Similarity=0.352  Sum_probs=153.3

Q ss_pred             cccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           21 VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        21 ~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      +....++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++     ..++.++.+|+++.++++++++
T Consensus         6 ~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~   80 (249)
T 3f9i_A            6 HHHMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCNLANKEECSNLIS   80 (249)
T ss_dssp             ---CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHH
T ss_pred             ccccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----ccCccEEEcCCCCHHHHHHHHH
Confidence            34556789999999999999999999999999999999999988877776665     3478899999999999988887


Q ss_pred             HHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          101 EYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      ++    +++|++|||||...  +..+.+.++|.+.+++|+.++++++++++|.|.+     .+.|+||++||..+..   
T Consensus        81 ~~----~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~---  148 (249)
T 3f9i_A           81 KT----SNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQ-----KRYGRIINISSIVGIA---  148 (249)
T ss_dssp             TC----SCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCCCC-----
T ss_pred             hc----CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCcEEEEEccHHhcc---
Confidence            54    68999999999774  3456788899999999999999999999999987     4578999999998876   


Q ss_pred             cCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          179 EGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                  +.++...|++||+++++|+++++.++.++|  |++|+|+||+++|++.+...
T Consensus       149 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~~  198 (249)
T 3f9i_A          149 ------------GNPGQANYCASKAGLIGMTKSLSYEVATRG--ITVNAVAPGFIKSDMTDKLN  198 (249)
T ss_dssp             ------------CCSCSHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBC------CC
T ss_pred             ------------CCCCCchhHHHHHHHHHHHHHHHHHHHHcC--cEEEEEecCccccCcccccC
Confidence                        455778999999999999999999999988  99999999999999877653

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=100.00  E-value=2.1e-35  Score=248.11  Aligned_cols=191  Identities=26%  Similarity=0.333  Sum_probs=170.4

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-ccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++|++|||||+||||++++++|+++|++|++++| +.+.+++..+++...  +.++.++.+|++|+++++++++++.+
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999 777777777777654  55789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSR-EGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +++++|+||||||...  +..+.+.++|.+.+++|+.+++++++++++.+.+     .+ .++||++||..+..      
T Consensus        82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-----~~~~~~iv~isS~~~~~------  150 (261)
T 1gee_A           82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVE-----NDIKGTVINMSSVHEKI------  150 (261)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCCCEEEEECCGGGTS------
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-----CCCCCEEEEeCCHHhcC------
Confidence            9999999999999764  3456788999999999999999999999999987     33 68999999988765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|++++.++++++.++.++|  |++|+|+||+++|++.+.
T Consensus       151 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  198 (261)
T 1gee_A          151 ---------PWPLFVHYAASKGGMKLMTETLALEYAPKG--IRVNNIGPGAINTPINAE  198 (261)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBCSGGGHH
T ss_pred             ---------CCCCccHHHHHHHHHHHHHHHHHHHhcccC--eEEEEEeeCCcCCchhhh
Confidence                     455678999999999999999999999888  999999999999998754

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=100.00  E-value=2.5e-35  Score=245.64  Aligned_cols=195  Identities=32%  Similarity=0.344  Sum_probs=172.3

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ++++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++.... +.++.++.+|++|+++++++++++.
T Consensus         2 ~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~   80 (248)
T 2pnf_A            2 EIKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIY   80 (248)
T ss_dssp             CCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHH
Confidence            356889999999999999999999999999999999999888877777765522 4578999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|+||||||...  +..+.+.+++.+.+++|+.+++++++++++.+.+     .+.++||++||..+..      
T Consensus        81 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~------  149 (248)
T 2pnf_A           81 NLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIK-----QRWGRIVNISSVVGFT------  149 (248)
T ss_dssp             HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHH-----HTCEEEEEECCHHHHH------
T ss_pred             HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-----cCCcEEEEEccHHhcC------
Confidence            99999999999999764  3356788999999999999999999999999986     3468999999988765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++...|+++|++++++++.++.++...+  |++|+|+||+++|++....
T Consensus       150 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~--i~v~~v~Pg~v~t~~~~~~  198 (248)
T 2pnf_A          150 ---------GNVGQVNYSTTKAGLIGFTKSLAKELAPRN--VLVNAVAPGFIETDMTAVL  198 (248)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCGGGGGS
T ss_pred             ---------CCCCCchHHHHHHHHHHHHHHHHHHhcccC--eEEEEEEeceecCchhhhc
Confidence                     344667899999999999999999999888  9999999999999987643

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=1.6e-35  Score=250.89  Aligned_cols=192  Identities=28%  Similarity=0.341  Sum_probs=170.2

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++.+++++.
T Consensus        26 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~  103 (272)
T 1yb1_A           26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVK  103 (272)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc--CCeEEEEEeeCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999988888888887765  5579999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|+||||||...  +..+.+.+++.+.+++|+.+++++++++++.|.+     .+.++||++||..+..      
T Consensus       104 ~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~------  172 (272)
T 1yb1_A          104 AEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTK-----NNHGHIVTVASAAGHV------  172 (272)
T ss_dssp             HHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCEEEEEECCCC-CC------
T ss_pred             HHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCCEEEEEechhhcC------
Confidence            99999999999999764  3445677899999999999999999999999987     4568999999998765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHh---hCCCcEEEEEeeCCceecCccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLK---EDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~---~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                               +.++...|+++|+++++++++++.++.   +.|  |++|+|+||+++|++.+
T Consensus       173 ---------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~g--i~v~~v~Pg~v~t~~~~  222 (272)
T 1yb1_A          173 ---------SVPFLLAYCSSKFAAVGFHKTLTDELAALQITG--VKTTCLCPNFVNTGFIK  222 (272)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT--EEEEEEEETHHHHCSTT
T ss_pred             ---------CCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCC--eEEEEEeCCcccCCccc
Confidence                     333567899999999999999999997   445  99999999999999864

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=100.00  E-value=1.3e-35  Score=247.34  Aligned_cols=192  Identities=27%  Similarity=0.331  Sum_probs=155.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      |++++|++|||||+||||++++++|+++|++|+++ .|+.+.+++..+++...  +.++.++.+|++|+++++.+++++.
T Consensus         1 M~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   78 (247)
T 2hq1_A            1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA--GINVVVAKGDVKNPEDVENMVKTAM   78 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHT--TCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999 67777777777777654  5578999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|+||||||...  +..+.+.+++.+.+++|+.+++++++++++.|.+     .+.++||++||..+..      
T Consensus        79 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~------  147 (247)
T 2hq1_A           79 DAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLK-----QKSGKIINITSIAGII------  147 (247)
T ss_dssp             HHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHH-----HTCEEEEEECC-----------
T ss_pred             HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEEcChhhcc------
Confidence            99999999999999764  3455678889999999999999999999999986     3468999999988765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|++++.++++++.++...+  |++|+|+||+++|++...
T Consensus       148 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  195 (247)
T 2hq1_A          148 ---------GNAGQANYAASKAGLIGFTKSIAKEFAAKG--IYCNAVAPGIIKTDMTDV  195 (247)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHT
T ss_pred             ---------CCCCCcHhHHHHHHHHHHHHHHHHHHHHcC--cEEEEEEEEEEeccchhh
Confidence                     344668899999999999999999999888  999999999999998654

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=100.00  E-value=6.1e-35  Score=245.56  Aligned_cols=203  Identities=27%  Similarity=0.309  Sum_probs=172.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++|++|||||+||||++++++|+++|++|++++|+.+...+..+++.+.. +.++.++++|++|+++++.+++++.
T Consensus         9 ~~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~   87 (265)
T 1h5q_A            9 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQID   87 (265)
T ss_dssp             EECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHH
Confidence            456889999999999999999999999999999999998777766666665432 4578999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.++++|+||||||...  +..+.+.+++.+.+++|+.+++++++++++.+.++    +..++||++||..+....+.. 
T Consensus        88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~----~~~~~iv~~sS~~~~~~~~~~-  162 (265)
T 1h5q_A           88 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQK----QQKGSIVVTSSMSSQIINQSS-  162 (265)
T ss_dssp             HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TCCEEEEEECCGGGTSCCEEE-
T ss_pred             HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhc----CCCceEEEeCCchhhcccccc-
Confidence            99999999999999764  34567889999999999999999999999999863    235899999998876532210 


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                             ..+..+...|+++|+++++++++++.++.+.|  |++|+|+||+++|++.+..
T Consensus       163 -------~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~~  213 (265)
T 1h5q_A          163 -------LNGSLTQVFYNSSKAACSNLVKGLAAEWASAG--IRVNALSPGYVNTDQTAHM  213 (265)
T ss_dssp             -------TTEECSCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCGGGGGS
T ss_pred             -------ccccccccccHHHHHHHHHHHHHHHHHHHhcC--cEEEEEecCcccccccccc
Confidence                   01223467899999999999999999999888  9999999999999987654

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=248.07  Aligned_cols=195  Identities=26%  Similarity=0.289  Sum_probs=166.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhC-----CCCceEEEEeCCCCHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-----PSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      .++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++....     +..++.++++|++|+++++.++
T Consensus         3 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   82 (264)
T 2pd6_A            3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLL   82 (264)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHH
Confidence            45789999999999999999999999999999999999887777666554321     1157899999999999999999


Q ss_pred             HHHhcCCCCe-eEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275          100 SEYNSQGRPL-NILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       100 ~~~~~~~g~i-d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      +++.+++|++ |+||||||...  +..+.+.++|.+.+++|+.+++++++++++.+.++    +..|+||++||..+.. 
T Consensus        83 ~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----~~~g~iv~isS~~~~~-  157 (264)
T 2pd6_A           83 EQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSN----GCRGSIINISSIVGKV-  157 (264)
T ss_dssp             HHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TCCEEEEEECCTHHHH-
T ss_pred             HHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc----CCCceEEEECChhhcc-
Confidence            9999999998 99999999764  34567899999999999999999999999999863    1257999999998776 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                    +.++...|+++|++++++++.++.++.+.|  |++|+|+||++.|++...
T Consensus       158 --------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  205 (264)
T 2pd6_A          158 --------------GNVGQTNYAASKAGVIGLTQTAARELGRHG--IRCNSVLPGFIATPMTQK  205 (264)
T ss_dssp             --------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSCC---
T ss_pred             --------------CCCCChhhHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeeecccccchhh
Confidence                          445678999999999999999999999888  999999999999998764

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=100.00  E-value=4.4e-36  Score=253.89  Aligned_cols=187  Identities=19%  Similarity=0.191  Sum_probs=161.7

Q ss_pred             CCCCCcEEEEecC--CCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGA--SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        25 ~~~~~k~vlItG~--s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .++++|++|||||  ++|||++++++|+++|++|++++|+.+..   .+++.+.. +.++.++++|++|+++++++++++
T Consensus         3 ~~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~   78 (269)
T 2h7i_A            3 GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL---IQRITDRL-PAKAPLLELDVQNEEHLASLAGRV   78 (269)
T ss_dssp             CTTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHH---HHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHH---HHHHHHhc-CCCceEEEccCCCHHHHHHHHHHH
Confidence            3578999999999  99999999999999999999999987652   12232222 346889999999999999999999


Q ss_pred             hcCCC---CeeEEEEccCCCC-------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          103 NSQGR---PLNILINNAGIMA-------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       103 ~~~~g---~id~lv~~ag~~~-------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      .+++|   ++|+||||||...       ++.+.+.++|.+.+++|+.++++++++++|+|.+       .|+||++||..
T Consensus        79 ~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-------~g~iv~iss~~  151 (269)
T 2h7i_A           79 TEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNP-------GGSIVGMDFDP  151 (269)
T ss_dssp             HHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-------EEEEEEEECCC
T ss_pred             HHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc-------CCeEEEEcCcc
Confidence            99998   9999999999764       3456889999999999999999999999999864       47999999976


Q ss_pred             cccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          173 HRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      + .               +.+.+..|+++|+++++|+++++.|++++|  |+||+|+||+++|++.+.
T Consensus       152 ~-~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~g--i~vn~v~PG~v~T~~~~~  201 (269)
T 2h7i_A          152 S-R---------------AMPAYNWMTVAKSALESVNRFVAREAGKYG--VRSNLVAAGPIRTLAMSA  201 (269)
T ss_dssp             S-S---------------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEEECCCCCHHHHH
T ss_pred             c-c---------------ccCchHHHHHHHHHHHHHHHHHHHHhcccC--cEEEEEecCcccchhhhc
Confidence            4 2               344678899999999999999999999888  999999999999998654

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=100.00  E-value=3.9e-35  Score=244.86  Aligned_cols=190  Identities=28%  Similarity=0.298  Sum_probs=167.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++.... +.++.++.+|++|+++++++++++.++++
T Consensus         1 ~~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            36899999999999999999999999999999999888777776662221 45789999999999999999999999999


Q ss_pred             CeeEEEEccCCCCC-----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          108 PLNILINNAGIMAS-----PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       108 ~id~lv~~ag~~~~-----~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|+||||||....     +.+.+.+++.+.+++|+.+++++++.+++.|.+     .+.++||++||..+..       
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~~~~iv~isS~~~~~-------  147 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLL-----QGAGVIVNIASVASLV-------  147 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS-------
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----CCCCEEEEECChhhcc-------
Confidence            99999999997642     446788999999999999999999999999987     3468999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|+++++++++++.++.++|  |++|+|+||+++|++.+.
T Consensus       148 --------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~g--i~v~~v~Pg~v~t~~~~~  195 (250)
T 2cfc_A          148 --------AFPGRSAYTTSKGAVLQLTKSVAVDYAGSG--IRCNAVCPGMIETPMTQW  195 (250)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSTTTHH
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHHhcccC--eEEEEEEeCcCccCcccc
Confidence                    445678999999999999999999999888  999999999999998664

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=100.00  E-value=5.6e-35  Score=247.55  Aligned_cols=194  Identities=23%  Similarity=0.286  Sum_probs=169.1

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++++|++|||||+||||++++++|+++|++|++++|+.+..++..+++..   ..++.++.+|++|+++++.+++++
T Consensus        10 ~~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~   86 (278)
T 2bgk_A           10 STNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTT   86 (278)
T ss_dssp             -CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CcccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCC---CCceEEEECCCCCHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999988766666555522   237899999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275          103 NSQGRPLNILINNAGIMA----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                      .++++++|+||||||...    +..+.+.++|.+.+++|+.+++++++++++.|.+     .+.++||++||..+..   
T Consensus        87 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~---  158 (278)
T 2bgk_A           87 IAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIP-----AKKGSIVFTASISSFT---  158 (278)
T ss_dssp             HHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGG-----GTCEEEEEECCGGGTC---
T ss_pred             HHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhh-----cCCCeEEEEeeccccC---
Confidence            999999999999999763    3456788999999999999999999999999986     3578999999988765   


Q ss_pred             cCccCCCCCcccCCC-CccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          179 EGIRFDKINDESAYN-SFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~-~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                  +.+ +...|+++|+++++++++++.++.+.|  |++++|+||++.|++....
T Consensus       159 ------------~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~~  208 (278)
T 2bgk_A          159 ------------AGEGVSHVYTATKHAVLGLTTSLCTELGEYG--IRVNCVSPYIVASPLLTDV  208 (278)
T ss_dssp             ------------CCTTSCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCSCCCCTTS
T ss_pred             ------------CCCCCCcchHHHHHHHHHHHHHHHHHHhhcC--cEEEEEEeceecchhhhhh
Confidence                        233 567899999999999999999999888  9999999999999987653

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=100.00  E-value=5e-35  Score=244.74  Aligned_cols=193  Identities=28%  Similarity=0.373  Sum_probs=171.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++.+++++.
T Consensus         6 ~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   83 (255)
T 1fmc_A            6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFAI   83 (255)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999988888877777665  4578999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          104 SQGRPLNILINNAGIMAS-PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++++++|+||||||.... ..+.+.+++.+.+++|+.++++++++++|.|.+     .+.++||++||..+..       
T Consensus        84 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~-------  151 (255)
T 1fmc_A           84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEK-----NGGGVILTITSMAAEN-------  151 (255)
T ss_dssp             HHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTC-------
T ss_pred             HhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCcEEEEEcchhhcC-------
Confidence            999999999999997642 236788999999999999999999999999986     3468999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|+++|++++.+++.++.++...+  |++|+|+||++.|++.+.
T Consensus       152 --------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~--i~v~~v~Pg~v~t~~~~~  199 (255)
T 1fmc_A          152 --------KNINMTSYASSKAAASHLVRNMAFDLGEKN--IRVNGIAPGAILTDALKS  199 (255)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTT--EEEEEEEECSBCSHHHHT
T ss_pred             --------CCCCCcccHHHHHHHHHHHHHHHHHhhhcC--cEEEEEecccCcchhhhh
Confidence                    445678899999999999999999999888  999999999999997654

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=100.00  E-value=2.2e-35  Score=249.09  Aligned_cols=180  Identities=29%  Similarity=0.298  Sum_probs=161.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|++|||||++|||++++++|+++|++|++++|+.+.             +.++.++++|++|+++++.+++++.+
T Consensus         4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~Dl~~~~~v~~~~~~~~~   70 (264)
T 2dtx_A            4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-------------EAKYDHIECDVTNPDQVKASIDHIFK   70 (264)
T ss_dssp             GGGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC-------------SCSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc-------------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999998764             34688999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|+||||||...  ++.+.+.++|.+.+++|+.++++++++++|.|++     .+.|+||++||..+..       
T Consensus        71 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~-------  138 (264)
T 2dtx_A           71 EYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIR-----SRDPSIVNISSVQASI-------  138 (264)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-----SSSCEEEEECCGGGTS-------
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----cCCcEEEEECCchhcc-------
Confidence            9999999999999763  4567889999999999999999999999999976     4568999999998765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.++...|++||+++++|+++++.++.+.   |++|+|+||+++|++...
T Consensus       139 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~---i~vn~v~PG~v~t~~~~~  185 (264)
T 2dtx_A          139 --------ITKNASAYVTSKHAVIGLTKSIALDYAPL---LRCNAVCPATIDTPLVRK  185 (264)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHTTT---SEEEEEEECSBCSHHHHH
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHHhcCC---cEEEEEEeCCCcCcchhh
Confidence                    44567899999999999999999999865   999999999999998654

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=1.3e-35  Score=245.29  Aligned_cols=183  Identities=20%  Similarity=0.214  Sum_probs=153.7

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |++|||||++|||++++++|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++.+++++.+.+   
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~---   73 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLFEQLDSIP---   73 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHHHSCSSCC---
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHHHHHhhcC---
Confidence            68999999999999999999999999999999988776665554     4578899999999999999999876643   


Q ss_pred             eEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          110 NILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       110 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      |+||||||...  +..+.+.++|++.+++|+.++++++++++|.+.+      ++++||++||..+..            
T Consensus        74 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~------~~~~iv~isS~~~~~------------  135 (230)
T 3guy_A           74 STVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKD------QPVNVVMIMSTAAQQ------------  135 (230)
T ss_dssp             SEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTT------SCCEEEEECCGGGTS------------
T ss_pred             CEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCeEEEEeecccCC------------
Confidence            99999999764  3457889999999999999999999999999975      345999999998776            


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                         +.++...|++||+++++|+++++.++.++|  |++|+|+||+++|++.+....
T Consensus       136 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~~~  186 (230)
T 3guy_A          136 ---PKAQESTYCAVKWAVKGLIESVRLELKGKP--MKIIAVYPGGMATEFWETSGK  186 (230)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHTTTSS--CEEEEEEECCC----------
T ss_pred             ---CCCCCchhHHHHHHHHHHHHHHHHHHHhcC--eEEEEEECCcccChHHHhcCC
Confidence               555778999999999999999999999988  999999999999999876554

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=100.00  E-value=2.5e-35  Score=246.98  Aligned_cols=190  Identities=28%  Similarity=0.316  Sum_probs=163.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCe-EEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCH-HHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVH-VIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL-ASVRKFASEY  102 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~si~~~~~~~  102 (255)
                      |++++|++|||||+||||++++++|+++|++ |++++|+.+.  +..+++.+..++.++.++.+|++|+ ++++++++++
T Consensus         1 m~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   78 (254)
T 1sby_A            1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKI   78 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHH
Confidence            4578999999999999999999999999996 9999998742  3345555554456789999999998 9999999999


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .+.++++|+||||||..      +.+++++.+++|+.++++++++++|.|.++..  +..|+||++||..+..       
T Consensus        79 ~~~~g~id~lv~~Ag~~------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--~~~g~iv~isS~~~~~-------  143 (254)
T 1sby_A           79 FDQLKTVDILINGAGIL------DDHQIERTIAINFTGLVNTTTAILDFWDKRKG--GPGGIIANICSVTGFN-------  143 (254)
T ss_dssp             HHHHSCCCEEEECCCCC------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGT--CCCEEEEEECCGGGTS-------
T ss_pred             HHhcCCCCEEEECCccC------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcC--CCCCEEEEECchhhcc-------
Confidence            99999999999999973      45788999999999999999999999975211  1258999999998765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +.++...|++||+++++|+++++.++.+.|  |++|+|+||+++|++.+..
T Consensus       144 --------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~g--i~v~~v~Pg~v~t~~~~~~  192 (254)
T 1sby_A          144 --------AIHQVPVYSASKAAVVSFTNSLAKLAPITG--VTAYSINPGITRTPLVHTF  192 (254)
T ss_dssp             --------CCTTSHHHHHHHHHHHHHHHHHHHHHHHHS--EEEEEEEECSEESHHHHSC
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHhccCC--eEEEEEecCCccCcccccc
Confidence                    445678999999999999999999998778  9999999999999987653

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=100.00  E-value=9.3e-36  Score=249.47  Aligned_cols=190  Identities=28%  Similarity=0.327  Sum_probs=168.0

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++|++|||||++|||++++++|+++|++|+++ .|+.+.+++..+++...  +.++.++.+|++|.++++.+++++.+.
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN--GGSAFSIGANLESLHGVEALYSSLDNE   82 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhc--CCceEEEecCcCCHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999886 67777788888888765  568999999999999999999988776


Q ss_pred             C------CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          106 G------RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       106 ~------g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      +      +++|+||||||+..  +..+.+.++|++++++|+.++++++++++|+|++       .++||++||..+..  
T Consensus        83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-------~~~iv~isS~~~~~--  153 (255)
T 3icc_A           83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD-------NSRIINISSAATRI--  153 (255)
T ss_dssp             HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE-------EEEEEEECCGGGTS--
T ss_pred             hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCC-------CCEEEEeCChhhcc--
Confidence            5      35999999999864  3456789999999999999999999999998843       57999999998776  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                   +.+....|++||+++++|+++++.|+.++|  |+||+|+||+++|++.+...
T Consensus       154 -------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~~  203 (255)
T 3icc_A          154 -------------SLPDFIAYSMTKGAINTMTFTLAKQLGARG--ITVNAILPGFVKTDMNAELL  203 (255)
T ss_dssp             -------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCBCCSSSTTTT
T ss_pred             -------------CCCCcchhHHhHHHHHHHHHHHHHHHHhcC--eEEEEEEEeeecccchhhhc
Confidence                         555778999999999999999999999988  99999999999999977543

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=100.00  E-value=8.9e-35  Score=243.22  Aligned_cols=190  Identities=28%  Similarity=0.328  Sum_probs=167.0

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCce-EEEEeCCCCHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV-DAMELDVSSLASVRKFASE  101 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~si~~~~~~  101 (255)
                      .++++++|++|||||+||||++++++|+++|++|++++|+.+++++..+++     +.++ .++.+|++|+++++.++++
T Consensus         5 ~~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~   79 (254)
T 2wsb_A            5 TVFRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL-----GAAVAARIVADVTDAEAMTAAAAE   79 (254)
T ss_dssp             TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEEECCTTCHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cccceeEEEEecCCHHHHHHHHHH
Confidence            446788999999999999999999999999999999999988777666655     2356 8899999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.+ ++++|+||||||...  +..+.+.+++.+.+++|+.++++++++++|.+.+     .+.++||++||..+...   
T Consensus        80 ~~~-~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-----~~~~~iv~isS~~~~~~---  150 (254)
T 2wsb_A           80 AEA-VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVA-----RGAGAIVNLGSMSGTIV---  150 (254)
T ss_dssp             HHH-HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTSC---
T ss_pred             HHh-hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCcEEEEEecchhccC---
Confidence            988 899999999999764  3566788999999999999999999999999987     34689999999887652   


Q ss_pred             CccCCCCCcccCCCCc--cchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          180 GIRFDKINDESAYNSF--GAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~--~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                  .+..  ..|+++|+++++++++++.++.++|  |++++|+||++.|++.+.
T Consensus       151 ------------~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~g--i~v~~v~Pg~v~t~~~~~  199 (254)
T 2wsb_A          151 ------------NRPQFASSYMASKGAVHQLTRALAAEWAGRG--VRVNALAPGYVATEMTLK  199 (254)
T ss_dssp             ------------CSSSCBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCSHHHHH
T ss_pred             ------------CCCCcchHHHHHHHHHHHHHHHHHHHHhhcC--eEEEEEEecccCchhhhc
Confidence                        2233  7899999999999999999999888  999999999999998754

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=100.00  E-value=1.4e-34  Score=248.13  Aligned_cols=200  Identities=22%  Similarity=0.219  Sum_probs=172.3

Q ss_pred             cccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHH
Q 025275           19 EEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        19 ~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      ..+....++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++.... +.++.++++|++|.++++++
T Consensus        16 ~~~~~~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~   94 (302)
T 1w6u_A           16 KAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNT   94 (302)
T ss_dssp             SCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCcccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHH
Confidence            34445667899999999999999999999999999999999999888888877776542 34789999999999999999


Q ss_pred             HHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275           99 ASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      ++++.+.++++|+||||||...  +..+.+.+++.+.+++|+.+++++++++++.+.+.    ...++||++||..+.. 
T Consensus        95 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~----~~~~~iv~isS~~~~~-  169 (302)
T 1w6u_A           95 VSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKA----QKGAAFLSITTIYAET-  169 (302)
T ss_dssp             HHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCEEEEEECCTHHHH-
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----cCCCEEEEEccccccc-
Confidence            9999999999999999999753  34567889999999999999999999999999742    3468999999998765 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC-cccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN-LFRY  240 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~-~~~~  240 (255)
                                    +.++...|+++|+++++++++++.++.+.|  |++|+|+||++.|+ +...
T Consensus       170 --------------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~g--i~v~~v~Pg~v~t~~~~~~  218 (302)
T 1w6u_A          170 --------------GSGFVVPSASAKAGVEAMSKSLAAEWGKYG--MRFNVIQPGPIKTKGAFSR  218 (302)
T ss_dssp             --------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCC------
T ss_pred             --------------CCCCcchhHHHHHHHHHHHHHHHHHhhhcC--cEEEEEeeccCCCcchhhh
Confidence                          445678999999999999999999999888  99999999999998 4443

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=100.00  E-value=5.6e-35  Score=241.82  Aligned_cols=187  Identities=26%  Similarity=0.307  Sum_probs=156.7

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +.++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++      .++.++.+|++|+++++++++++.+.
T Consensus         2 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~   75 (234)
T 2ehd_A            2 EGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL------EGALPLPGDVREEGDWARAVAAMEEA   75 (234)
T ss_dssp             --CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh------hhceEEEecCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999999999999999977665554433      16789999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++++|+||||||...  +..+.+.++|.+.+++|+.+++++++.+++.+.+     .+.++||++||..+..        
T Consensus        76 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-----~~~~~iv~isS~~~~~--------  142 (234)
T 2ehd_A           76 FGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLR-----RGGGTIVNVGSLAGKN--------  142 (234)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-----TTCEEEEEECCTTTTS--------
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----CCCcEEEEECCchhcC--------
Confidence            999999999999763  3456788999999999999999999999999986     4568999999988765        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                             +.++...|+++|+++++++++++.++.+.|  |++|+|+||+++|++...
T Consensus       143 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  190 (234)
T 2ehd_A          143 -------PFKGGAAYNASKFGLLGLAGAAMLDLREAN--VRVVNVLPGSVDTGFAGN  190 (234)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEECC---------
T ss_pred             -------CCCCCchhhHHHHHHHHHHHHHHHHHhhcC--cEEEEEEeCCCcCCcccc
Confidence                   445678999999999999999999999888  999999999999998764

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=100.00  E-value=6.3e-35  Score=243.73  Aligned_cols=192  Identities=27%  Similarity=0.297  Sum_probs=168.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++..   ..++.++.+|++|+++++.+++++.+
T Consensus         2 ~~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (251)
T 1zk4_A            2 NRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEK   78 (251)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc---cCceEEEECCCCCHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999998777766665532   24789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSRE-GRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~-g~ii~vsS~~~~~~~~~~~  181 (255)
                      .++++|+||||||...  +..+.+.++|.+.+++|+.+++++++.+++.+.+     .+. ++||++||..+..      
T Consensus        79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-----~~~~~~iv~isS~~~~~------  147 (251)
T 1zk4_A           79 AFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKN-----KGLGASIINMSSIEGFV------  147 (251)
T ss_dssp             HHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-----SSSCEEEEEECCGGGTS------
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-----cCCCCEEEEeCCchhcc------
Confidence            9999999999999763  3456789999999999999999999999999976     333 7999999988765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHh--hCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLK--EDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~--~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++...|+++|+++++++++++.++.  ..|  |++++|+||+++|++.+..
T Consensus       148 ---------~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~--i~v~~v~Pg~v~t~~~~~~  198 (251)
T 1zk4_A          148 ---------GDPSLGAYNASKGAVRIMSKSAALDCALKDYD--VRVNTVHPGYIKTPLVDDL  198 (251)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCS--EEEEEEEECCBCCHHHHTS
T ss_pred             ---------CCCCCccchHHHHHHHHHHHHHHHHhcccCCC--eEEEEEeeCcCcchhhhhc
Confidence                     445678999999999999999999998  666  9999999999999987653

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=1.3e-34  Score=245.94  Aligned_cols=196  Identities=24%  Similarity=0.279  Sum_probs=170.1

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++.......++.++.+|++|+++++.+++++.+
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~  107 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS  107 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999888888888877653335788999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|+||||||...  +..+.+.++|.+.+++|+.+++++++.+++.+++..   ...++||++||..+...      
T Consensus       108 ~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~---~~~g~iv~isS~~~~~~------  178 (279)
T 1xg5_A          108 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERN---VDDGHIININSMSGHRV------  178 (279)
T ss_dssp             HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---CCSCEEEEECCGGGTSC------
T ss_pred             hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---CCCceEEEEcChhhccc------
Confidence            9999999999999763  345678899999999999999999999999998721   01389999999886521      


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHh--hCCCcEEEEEeeCCceecCcc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLK--EDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~--~~~~~i~vn~v~PG~v~t~~~  238 (255)
                             .+.++...|+++|+++++|++.++.++.  ..+  |++|+|+||+++|++.
T Consensus       179 -------~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~--i~v~~v~Pg~v~t~~~  227 (279)
T 1xg5_A          179 -------LPLSVTHFYSATKYAVTALTEGLRQELREAQTH--IRATCISPGVVETQFA  227 (279)
T ss_dssp             -------CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCC--CEEEEEEESCBCSSHH
T ss_pred             -------CCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCC--eEEEEEecCcccchhh
Confidence                   1344667899999999999999999998  666  9999999999999985

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=100.00  E-value=5.9e-35  Score=242.93  Aligned_cols=189  Identities=26%  Similarity=0.314  Sum_probs=168.2

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ||++|||||+||||++++++|+++|++|+++ +|+.+.+++..+++...  +.++.++++|++|+++++.+++++.++++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999999999985 78887777777777655  45789999999999999999999999999


Q ss_pred             CeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          108 PLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       108 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                      ++|+||||||...  +..+.+.++|.+.+++|+.++++++++++++|.+     .+.++||++||..+..          
T Consensus        79 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~----------  143 (244)
T 1edo_A           79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMK-----KRKGRIINIASVVGLI----------  143 (244)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCTHHHH----------
T ss_pred             CCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-----cCCCEEEEECChhhcC----------
Confidence            9999999999764  3456788999999999999999999999999986     3468999999998766          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                           +.++...|+++|+++++++++++.++...|  |++|+|+||+++|++....
T Consensus       144 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~~  192 (244)
T 1edo_A          144 -----GNIGQANYAAAKAGVIGFSKTAAREGASRN--INVNVVCPGFIASDMTAKL  192 (244)
T ss_dssp             -----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTT--EEEEEEEECSBCSHHHHTT
T ss_pred             -----CCCCCccchhhHHHHHHHHHHHHHHhhhcC--CEEEEEeeCccccchhhhc
Confidence                 344678999999999999999999999888  9999999999999987654

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=2.1e-35  Score=246.48  Aligned_cols=183  Identities=25%  Similarity=0.330  Sum_probs=156.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|++|||||++|||++++++|+++|++|++++|+.+++++.. +    .  .++.++++|++|+++++.++    +
T Consensus         2 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~----~--~~~~~~~~D~~~~~~~~~~~----~   70 (246)
T 2ag5_A            2 GRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-K----Y--PGIQTRVLDVTKKKQIDQFA----N   70 (246)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-G----S--TTEEEEECCTTCHHHHHHHH----H
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-h----c--cCceEEEeeCCCHHHHHHHH----H
Confidence            3578999999999999999999999999999999999876544332 1    1  26889999999999988444    4


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|+||||||...  +..+.+.++|++.+++|+.++++++++++|+|.+     .+.|+||++||..+..       
T Consensus        71 ~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~-------  138 (246)
T 2ag5_A           71 EVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLA-----QKSGNIINMSSVASSV-------  138 (246)
T ss_dssp             HCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCSBTTT-------
T ss_pred             HhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCceEEEEechHhCc-------
Confidence            4688999999999764  3456788999999999999999999999999986     3468999999988765       


Q ss_pred             CCCCCcccCCC-CccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYN-SFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~-~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.+ +...|+++|+++++++++++.|+.++|  |++|+|+||+++|++...
T Consensus       139 --------~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  187 (246)
T 2ag5_A          139 --------KGVVNRCVYSTTKAAVIGLTKSVAADFIQQG--IRCNCVCPGTVDTPSLQE  187 (246)
T ss_dssp             --------BCCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCEECHHHHH
T ss_pred             --------CCCCCCccHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEeeCcCcCcchhh
Confidence                    233 567899999999999999999999988  999999999999998654

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=100.00  E-value=1.5e-34  Score=245.35  Aligned_cols=196  Identities=22%  Similarity=0.235  Sum_probs=170.1

Q ss_pred             cccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           21 VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        21 ~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      ....+++++|++|||||+||||++++++|+++|++|++++|+.+..++..+.+...  +.++.++++|++|+++++.+++
T Consensus        26 ~~~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~  103 (279)
T 3ctm_A           26 VLDLFSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY--GVHSKAYKCNISDPKSVEETIS  103 (279)
T ss_dssp             GGGGGCCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH--CSCEEEEECCTTCHHHHHHHHH
T ss_pred             cccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeecCCHHHHHHHHH
Confidence            34556789999999999999999999999999999999999988877777766654  5578999999999999999999


Q ss_pred             HHhcCCCCeeEEEEccCCCCC---CC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275          101 EYNSQGRPLNILINNAGIMAS---PF-MLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~~---~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      ++.+.++++|+||||||....   .. +.+.++|.+.+++|+.+++++++.+++.+.+     .+.++||++||..+...
T Consensus       104 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~~~iv~isS~~~~~~  178 (279)
T 3ctm_A          104 QQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKK-----NGKGSLIITSSISGKIV  178 (279)
T ss_dssp             HHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCCEEEEECCCTTSCC
T ss_pred             HHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCeEEEECchHhccC
Confidence            999999999999999997632   33 6678899999999999999999999999987     34689999999887642


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      .             ..++...|+++|+++++++++++.++.+.+   ++|+|+||+++|++..
T Consensus       179 ~-------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~---~v~~v~Pg~v~t~~~~  225 (279)
T 3ctm_A          179 N-------------IPQLQAPYNTAKAACTHLAKSLAIEWAPFA---RVNTISPGYIDTDITD  225 (279)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHHHHHHHHTTTTC---EEEEEEECSBSSTTTS
T ss_pred             C-------------CCCCcccHHHHHHHHHHHHHHHHHHhcccC---CEEEEeccCCcccccc
Confidence            0             134667899999999999999999998764   8999999999999875

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=100.00  E-value=9e-35  Score=241.70  Aligned_cols=181  Identities=24%  Similarity=0.257  Sum_probs=159.0

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++|||||++|||++++++|+++|++|++++|+.+.   ..+++     +  +.++++|++| ++++.+++++.+.+++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~-----~--~~~~~~D~~~-~~~~~~~~~~~~~~g~   70 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AAQSL-----G--AVPLPTDLEK-DDPKGLVKRALEALGG   70 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHH-----T--CEEEECCTTT-SCHHHHHHHHHHHHTS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHhh-----C--cEEEecCCch-HHHHHHHHHHHHHcCC
Confidence            6899999999999999999999999999999999765   22332     2  6789999999 9999999999998999


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|+||||||...  +..+.+.++|++.+++|+.++++++++++|.|.+     .+.|+||++||..+....         
T Consensus        71 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~~~---------  136 (239)
T 2ekp_A           71 LHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAE-----AGWGRVLFIGSVTTFTAG---------  136 (239)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTSCC---------
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCcEEEEECchhhccCC---------
Confidence            999999999763  4567889999999999999999999999999987     346899999999876521         


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                          +.++...|+++|+++++|+++++.|+.++|  |++|+|+||+++|++.+.
T Consensus       137 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  184 (239)
T 2ekp_A          137 ----GPVPIPAYTTAKTALLGLTRALAKEWARLG--IRVNLLCPGYVETEFTLP  184 (239)
T ss_dssp             ----TTSCCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSGGGHH
T ss_pred             ----CCCCCccHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEEeCCccCchhhc
Confidence                114668999999999999999999999988  999999999999998654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=4.9e-35  Score=247.05  Aligned_cols=189  Identities=29%  Similarity=0.351  Sum_probs=164.0

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++.+...+.++.++.+|++|+++++.+++++.+++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999988777777776554334578999999999999999999999999


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      |++|+||||||..      +.++|.+.+++|+.+++.+++.++++|.++..  ++.|+||++||..+..           
T Consensus        85 g~id~lv~~Ag~~------~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~~g~iv~isS~~~~~-----------  145 (267)
T 2gdz_A           85 GRLDILVNNAGVN------NEKNWEKTLQINLVSVISGTYLGLDYMSKQNG--GEGGIIINMSSLAGLM-----------  145 (267)
T ss_dssp             SCCCEEEECCCCC------CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGT--CCCEEEEEECCGGGTS-----------
T ss_pred             CCCCEEEECCCCC------ChhhHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCCEEEEeCCccccC-----------
Confidence            9999999999964      24678999999999999999999999976311  1368999999998765           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHH--HHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKEL--AKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~l--a~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                          +.++...|+++|++++++++++  +.++.+.|  |++|+|+||+++|++...
T Consensus       146 ----~~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~g--i~v~~v~Pg~v~t~~~~~  195 (267)
T 2gdz_A          146 ----PVAQQPVYCASKHGIVGFTRSAALAANLMNSG--VRLNAICPGFVNTAILES  195 (267)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCC--EEEEEEEESCBSSHHHHG
T ss_pred             ----CCCCCchHHHHHHHHHHHHHHHHHHHHhccCC--cEEEEEecCcCcchhhhc
Confidence                4446678999999999999995  67888888  999999999999998654

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=100.00  E-value=2.6e-35  Score=274.45  Aligned_cols=189  Identities=25%  Similarity=0.275  Sum_probs=164.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc---------chHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM---------AAGKDVREAIVKEIPSAKVDAMELDVSSLAS   94 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s   94 (255)
                      .+++++|++|||||++|||+++|++|+++|++|++++|+.         +.++++.+++.+.  +.+.   .+|++|.++
T Consensus         3 ~~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~--g~~~---~~d~~d~~~   77 (604)
T 2et6_A            3 PVDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN--GGVA---VADYNNVLD   77 (604)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHT--TCEE---EEECCCTTC
T ss_pred             CCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhc--CCeE---EEEcCCHHH
Confidence            3568899999999999999999999999999999998765         6677777777664  3333   358888888


Q ss_pred             HHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           95 VRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        95 i~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ++++++++.+++|++|+||||||+..  ++.+++.++|++++++|+.|+++++|+++|+|++     ++.|+||++||.+
T Consensus        78 ~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~-----~~~G~IVnisS~a  152 (604)
T 2et6_A           78 GDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQK-----QKYGRIVNTSSPA  152 (604)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCHH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCCEEEEECCHH
Confidence            89999999999999999999999863  4677899999999999999999999999999987     3568999999999


Q ss_pred             cccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          173 HRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      +..               +.++...|++||+|+.+|+++++.|++++|  ||||+|+|| ++|+|...
T Consensus       153 g~~---------------~~~~~~~Y~asKaal~~lt~~la~El~~~g--IrVn~v~Pg-~~T~m~~~  202 (604)
T 2et6_A          153 GLY---------------GNFGQANYASAKSALLGFAETLAKEGAKYN--IKANAIAPL-ARSRMTES  202 (604)
T ss_dssp             HHH---------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEEC-CCCHHHHT
T ss_pred             HcC---------------CCCCchHHHHHHHHHHHHHHHHHHHhCccC--eEEEEEccC-CcCccccc
Confidence            877               445678999999999999999999999998  999999998 68988654

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=100.00  E-value=8.5e-35  Score=271.02  Aligned_cols=187  Identities=22%  Similarity=0.273  Sum_probs=161.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++||++|||||++|||+++|++|+++|++|++.++.  .++++.+++.+.  +.++..+.+|++  ++.+++++++.+
T Consensus       318 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~--~~~~~~~~i~~~--g~~~~~~~~Dv~--~~~~~~~~~~~~  391 (604)
T 2et6_A          318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFK--DATKTVDEIKAA--GGEAWPDQHDVA--KDSEAIIKNVID  391 (604)
T ss_dssp             CCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS--CCHHHHHHHHHT--TCEEEEECCCHH--HHHHHHHHHHHH
T ss_pred             cccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCc--cHHHHHHHHHhc--CCeEEEEEcChH--HHHHHHHHHHHH
Confidence            46899999999999999999999999999999999873  346666777654  557788888884  446778888888


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|+||||||+..  ++.+++.++|++++++|+.|+++++|+++|+|++     ++.|+||++||.++..       
T Consensus       392 ~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~-----~~~G~IVnisS~ag~~-------  459 (604)
T 2et6_A          392 KYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVE-----KQFGRIINITSTSGIY-------  459 (604)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCEEEEEECCHHHHS-------
T ss_pred             hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCCEEEEECChhhcc-------
Confidence            8999999999999863  4677899999999999999999999999999987     4579999999999876       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.+++..|++||+|+.+|+++++.|++++|  ||||+|+||. +|+|...
T Consensus       460 --------~~~~~~~Y~asKaal~~lt~~la~El~~~g--IrVn~v~PG~-~T~m~~~  506 (604)
T 2et6_A          460 --------GNFGQANYSSSKAGILGLSKTMAIEGAKNN--IKVNIVAPHA-ETAMTLS  506 (604)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECC-CCCC---
T ss_pred             --------CCCCChhHHHHHHHHHHHHHHHHHHhCccC--eEEEEEcCCC-CCccccc
Confidence                    445678999999999999999999999998  9999999995 9998764

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=100.00  E-value=1.7e-34  Score=241.76  Aligned_cols=197  Identities=21%  Similarity=0.277  Sum_probs=170.5

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec-cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN-MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++|++|||||+||||++++++|+++|++|++++|+ .+.+++..+++...  +.++.++.+|++|+++++.+++++.+
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEACQQLVDEFVA   81 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999 78888888877665  55799999999999999999999999


Q ss_pred             CCCCeeEEEEccCC-CC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGI-MA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~-~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +++++|+||||||. ..  +..+.+.+++.+.+++|+.++++++++++|.+.+.....+..++||++||..+...     
T Consensus        82 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-----  156 (258)
T 3afn_B           82 KFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG-----  156 (258)
T ss_dssp             HHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC-----
T ss_pred             HcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC-----
Confidence            99999999999997 32  34567889999999999999999999999999763210122379999999886541     


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|++++.+++.++.++.++|  |++|+|+||++.|++...
T Consensus       157 ---------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~g--i~v~~v~Pg~v~t~~~~~  204 (258)
T 3afn_B          157 ---------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDG--VRFNIVSPGTVDTAFHAD  204 (258)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBSSGGGTT
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHhhcccC--eEEEEEeCCCcccccccc
Confidence                     223567899999999999999999999888  999999999999998764

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=100.00  E-value=1.3e-34  Score=253.92  Aligned_cols=193  Identities=12%  Similarity=0.067  Sum_probs=162.8

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHH-cCCeEEEEEeccchHH------------HHHHHHHhhCCCCceEEEEeCCCCH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLAL-RGVHVIMAVRNMAAGK------------DVREAIVKEIPSAKVDAMELDVSSL   92 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~-~G~~Vi~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~Dl~~~   92 (255)
                      ...+|++|||||++|||+++|+.|++ .|++|++++|+.+...            ...+.+.+.  +.++..+.+|++|+
T Consensus        44 ~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~--G~~a~~i~~Dvtd~  121 (405)
T 3zu3_A           44 ANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQK--GLYAKSINGDAFSD  121 (405)
T ss_dssp             TTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTSH
T ss_pred             CCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhc--CCceEEEECCCCCH
Confidence            45689999999999999999999999 9999999998766432            223344443  56789999999999


Q ss_pred             HHHHHHHHHHhcCCCCeeEEEEccCCC---------------CCC---------------------CCCChHHHHHHHHH
Q 025275           93 ASVRKFASEYNSQGRPLNILINNAGIM---------------ASP---------------------FMLSKDNIELQFAT  136 (255)
Q Consensus        93 ~si~~~~~~~~~~~g~id~lv~~ag~~---------------~~~---------------------~~~~~~~~~~~~~~  136 (255)
                      ++++++++++.+++|++|+||||||..               .++                     .+.+.++|++++++
T Consensus       122 ~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~V  201 (405)
T 3zu3_A          122 EIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAV  201 (405)
T ss_dssp             HHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHh
Confidence            999999999999999999999999974               222                     55789999999999


Q ss_pred             HHHHHH-HHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCc--cchHHhHHHHHHHHHHHH
Q 025275          137 NHLGHF-LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF--GAYGQSKLANILHAKELA  213 (255)
Q Consensus       137 n~~~~~-~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~sKaa~~~l~~~la  213 (255)
                      |..+.| ++++++++....     .++|+||++||+.+..               +.+.+  ..|++||+++.+|+|++|
T Consensus       202 n~~~~~~~~~~~~~~~~m~-----~~gG~IVniSSi~~~~---------------~~p~~~~~aY~AaKaal~~ltrsLA  261 (405)
T 3zu3_A          202 MGGEDWQMWIDALLDAGVL-----AEGAQTTAFTYLGEKI---------------THDIYWNGSIGAAKKDLDQKVLAIR  261 (405)
T ss_dssp             HSSHHHHHHHHHHHHHTCE-----EEEEEEEEEECCCCGG---------------GTTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred             hchhHHHHHHHHHHHHhhh-----hCCcEEEEEeCchhhC---------------cCCCccchHHHHHHHHHHHHHHHHH
Confidence            999998 788877654332     2358999999999776               34455  899999999999999999


Q ss_pred             HHHhhC-CCcEEEEEeeCCceecCcccccC
Q 025275          214 KHLKED-GVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       214 ~~~~~~-~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      .|++++ |  ||||+|+||.+.|++.....
T Consensus       262 ~Ela~~~G--IRVNaVaPG~i~T~~s~~ip  289 (405)
T 3zu3_A          262 ESLAAHGG--GDARVSVLKAVVSQASSAIP  289 (405)
T ss_dssp             HHHHTTTS--CEEEEEECCCCCCHHHHTST
T ss_pred             HHhCcccC--eEEEEEEeCCCcCchhhcCC
Confidence            999999 8  99999999999999877654

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=100.00  E-value=7.5e-35  Score=253.10  Aligned_cols=190  Identities=22%  Similarity=0.234  Sum_probs=158.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhh----CCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE----IPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ++|++|||||++|||++++++|+++|++|++++|+...++...+.+...    ..+.++.++.+|++|+++++.+++++.
T Consensus         1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            4789999999999999999999999999999988766554444433321    123578999999999999999999883


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                        ++++|+||||||+..  +..+.+.++|.+++++|+.++++++++++|+|++     .+.|+||++||..+..      
T Consensus        81 --~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~-----~~~g~IV~isS~~~~~------  147 (327)
T 1jtv_A           81 --EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKR-----RGSGRVLVTGSVGGLM------  147 (327)
T ss_dssp             --TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEEEEGGGTS------
T ss_pred             --cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCEEEEECCccccc------
Confidence              588999999999763  4556789999999999999999999999999986     3468999999998776      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.+....|++||+++++|+++++.|+.+.|  |+||+|+||+|+|++.+..
T Consensus       148 ---------~~~~~~~Y~aSK~a~~~~~~~la~el~~~g--I~v~~v~PG~v~T~~~~~~  196 (327)
T 1jtv_A          148 ---------GLPFNDVYCASKFALEGLCESLAVLLLPFG--VHLSLIECGPVHTAFMEKV  196 (327)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCC------
T ss_pred             ---------CCCCChHHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEEeCcccChHHhhh
Confidence                     444678999999999999999999999988  9999999999999997653

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=3.1e-34  Score=246.23  Aligned_cols=193  Identities=22%  Similarity=0.275  Sum_probs=169.0

Q ss_pred             ccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhC---CCCceEEEEeCCCCHHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI---PSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      .....+++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++....   .+.++.++.+|++|+++++.+
T Consensus        11 ~~~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~   90 (303)
T 1yxm_A           11 LAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNL   90 (303)
T ss_dssp             BCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHH
T ss_pred             cCcCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHH
Confidence            34456889999999999999999999999999999999999888888888876521   245799999999999999999


Q ss_pred             HHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275           99 ASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      ++++.+.+|++|+||||||...  +..+.+.+++.+.+++|+.+++++++++++.+.+     ...++||++||.. .. 
T Consensus        91 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----~~~~~iv~isS~~-~~-  163 (303)
T 1yxm_A           91 VKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMK-----EHGGSIVNIIVPT-KA-  163 (303)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHH-----HHCEEEEEECCCC-TT-
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----hcCCeEEEEEeec-cc-
Confidence            9999999999999999999653  3456788999999999999999999999996554     2368999999987 43 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                                    +.+....|+++|+++.+++++++.++.+.|  |++|+|+||++.|++
T Consensus       164 --------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~  208 (303)
T 1yxm_A          164 --------------GFPLAVHSGAARAGVYNLTKSLALEWACSG--IRINCVAPGVIYSQT  208 (303)
T ss_dssp             --------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEEECSBCCTG
T ss_pred             --------------CCCcchhhHHHHHHHHHHHHHHHHHhcccC--eEEEEEecCCcccch
Confidence                          444667899999999999999999999888  999999999999995

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=100.00  E-value=4.8e-35  Score=244.09  Aligned_cols=176  Identities=23%  Similarity=0.253  Sum_probs=155.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHH-cCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLAL-RGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .++|++|||||++|||+++|++|++ .|+.|++++|+.+..            ...+.++++|++|+++++++++.+.  
T Consensus         2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~~~--   67 (244)
T 4e4y_A            2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS------------AENLKFIKADLTKQQDITNVLDIIK--   67 (244)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC------------CTTEEEEECCTTCHHHHHHHHHHTT--
T ss_pred             CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc------------cccceEEecCcCCHHHHHHHHHHHH--
Confidence            4679999999999999999999999 788999999887521            3467899999999999999996554  


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++++|+||||||+..  +..+.+.++|++++++|+.++++++++++|.|++       .|+||++||..+..        
T Consensus        68 ~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-------~g~iv~~sS~~~~~--------  132 (244)
T 4e4y_A           68 NVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKV-------GASIVFNGSDQCFI--------  132 (244)
T ss_dssp             TCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEE-------EEEEEEECCGGGTC--------
T ss_pred             hCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhcc-------CcEEEEECCHHHcc--------
Confidence            779999999999874  4667899999999999999999999999998865       37999999998776        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                             +.++...|++||+++++|+++++.|++++|  |++|+|+||+++|++.+.
T Consensus       133 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~~~  180 (244)
T 4e4y_A          133 -------AKPNSFAYTLSKGAIAQMTKSLALDLAKYQ--IRVNTVCPGTVDTDLYRN  180 (244)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEESCBCCHHHHH
T ss_pred             -------CCCCCchhHHHHHHHHHHHHHHHHHHHHcC--eEEEEEecCccCchhhHH
Confidence                   555778999999999999999999999998  999999999999998764

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=100.00  E-value=1.6e-34  Score=250.10  Aligned_cols=189  Identities=23%  Similarity=0.310  Sum_probs=164.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEE---------eccchHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAV---------RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLAS   94 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~---------r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s   94 (255)
                      .+++++|++|||||++|||+++|++|+++|++|++++         |+.+.+++..+++...  +..   ..+|+++.++
T Consensus         4 ~~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~--~~~---~~~D~~~~~~   78 (319)
T 1gz6_A            4 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR--GGK---AVANYDSVEA   78 (319)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT--TCE---EEEECCCGGG
T ss_pred             CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhh--CCe---EEEeCCCHHH
Confidence            4678999999999999999999999999999999974         4666777777777654  222   3589999999


Q ss_pred             HHHHHHHHhcCCCCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           95 VRKFASEYNSQGRPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        95 i~~~~~~~~~~~g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ++.+++++.+.++++|+||||||+...  +.+.+.++|+..+++|+.|+++++++++|+|++     .+.|+||++||..
T Consensus        79 ~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-----~~~grIV~vsS~~  153 (319)
T 1gz6_A           79 GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKK-----QNYGRIIMTASAS  153 (319)
T ss_dssp             HHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTCEEEEEECCHH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCCEEEEECChh
Confidence            999999999999999999999998743  456789999999999999999999999999987     3468999999988


Q ss_pred             cccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          173 HRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      +..               +.++...|++||+++.+|+++++.++.+.|  |++|+|+||++ |++.+.
T Consensus       154 ~~~---------------~~~~~~~Y~aSK~a~~~~~~~la~el~~~g--I~vn~v~PG~~-t~~~~~  203 (319)
T 1gz6_A          154 GIY---------------GNFGQANYSAAKLGLLGLANTLVIEGRKNN--IHCNTIAPNAG-SRMTET  203 (319)
T ss_dssp             HHH---------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEEEECC-STTTGG
T ss_pred             hcc---------------CCCCCHHHHHHHHHHHHHHHHHHHHhcccC--EEEEEEeCCCc-cccccc
Confidence            776               334678999999999999999999999988  99999999998 887654

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=100.00  E-value=2.3e-34  Score=239.37  Aligned_cols=188  Identities=27%  Similarity=0.306  Sum_probs=166.8

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCCCCceEE-EEeCCCCHHHHHHHHHHHhcCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDA-MELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~-~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +|++|||||+||||++++++|+++|++|+++ +|+.+.+++..+++...  +.++.. +.+|++|+++++++++++.+.+
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRR--GSPLVAVLGANLLEAEAATALVHQAAEVL   78 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHT--TCSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEeccCCCHHHHHHHHHHHHHhc
Confidence            4789999999999999999999999999998 88888877777777654  445666 9999999999999999999999


Q ss_pred             CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          107 RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       107 g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      +++|+||||||...  +..+.+.+++.+.+++|+.+++++++++++.+.+     .+.++||++||..+..         
T Consensus        79 ~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~---------  144 (245)
T 2ph3_A           79 GGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMK-----ARFGRIVNITSVVGIL---------  144 (245)
T ss_dssp             TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCTHHHH---------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHh-----cCCCEEEEEeChhhcc---------
Confidence            99999999999764  3456788999999999999999999999999987     3468999999998776         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                            +.++...|+++|+++++++++++.++.++|  |++|+|+||+++|++.+.
T Consensus       145 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  192 (245)
T 2ph3_A          145 ------GNPGQANYVASKAGLIGFTRAVAKEYAQRG--ITVNAVAPGFIETEMTER  192 (245)
T ss_dssp             ------CCSSBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHT
T ss_pred             ------CCCCCcchHHHHHHHHHHHHHHHHHHHHcC--eEEEEEEEEeecCcchhh
Confidence                  344678999999999999999999999888  999999999999998764

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=100.00  E-value=3.3e-34  Score=244.34  Aligned_cols=190  Identities=26%  Similarity=0.253  Sum_probs=167.4

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++.+.. ..++.++.+|++|+++++.+++++.+.
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKL  103 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999988888887776652 347899999999999999999999999


Q ss_pred             CCCeeEEEEc-cCCCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINN-AGIMA-SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~-ag~~~-~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+|||| +|... +..+.+.+++.+.+++|+.|+++++++++|.+.+.      .|+||++||..+..        
T Consensus       104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------~g~iv~isS~~~~~--------  169 (286)
T 1xu9_A          104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS------NGSIVVVSSLAGKV--------  169 (286)
T ss_dssp             HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------TCEEEEEEEGGGTS--------
T ss_pred             cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC------CCEEEEECCccccc--------
Confidence            9999999999 56543 34456889999999999999999999999998752      57999999998765        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHh--hCCCcEEEEEeeCCceecCccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLK--EDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~--~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                             +.++...|++||+++++++++++.|+.  ..+  |++++|+||+++|++..
T Consensus       170 -------~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~--i~v~~v~Pg~v~t~~~~  218 (286)
T 1xu9_A          170 -------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVN--VSITLCVLGLIDTETAM  218 (286)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCC--CEEEEEEECCBCCHHHH
T ss_pred             -------CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCC--eEEEEeecCccCChhHH
Confidence                   445678999999999999999999994  455  99999999999999865

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=100.00  E-value=1.4e-34  Score=241.23  Aligned_cols=177  Identities=16%  Similarity=0.205  Sum_probs=154.5

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEE-E--eccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMA-V--RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~--r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +|++|||||++|||++++++|+++|++|+++ +  |+.+.+++..+++    .+.       |+.|+++++.+++++.++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~----~~~-------~~~~~~~v~~~~~~~~~~   69 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN----PGT-------IALAEQKPERLVDATLQH   69 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS----TTE-------EECCCCCGGGHHHHHGGG
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh----CCC-------cccCHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999 6  9887776665554    121       233777788999999999


Q ss_pred             CCCeeEEEEccCCCC-----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          106 GRPLNILINNAGIMA-----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       106 ~g~id~lv~~ag~~~-----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      +|++|+||||||...     ++.+.+.++|++++++|+.++++++++++|+|.+     .+.|+||++||..+..     
T Consensus        70 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-----~~~g~iv~isS~~~~~-----  139 (244)
T 1zmo_A           70 GEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRA-----AGGASVIFITSSVGKK-----  139 (244)
T ss_dssp             SSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCEEEEEECCGGGTS-----
T ss_pred             cCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCcEEEEECChhhCC-----
Confidence            999999999999763     3457889999999999999999999999999987     4578999999998776     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                                +.++...|+++|+++++|+++++.|++++|  |+||+|+||+++|++.
T Consensus       140 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~T~~~  185 (244)
T 1zmo_A          140 ----------PLAYNPLYGPARAATVALVESAAKTLSRDG--ILLYAIGPNFFNNPTY  185 (244)
T ss_dssp             ----------CCTTCTTHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESSBCBTTT
T ss_pred             ----------CCCCchHHHHHHHHHHHHHHHHHHHHhhcC--cEEEEEeeCCCcCCcc
Confidence                      445678999999999999999999999988  9999999999999997

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=100.00  E-value=4.9e-35  Score=258.66  Aligned_cols=191  Identities=17%  Similarity=0.102  Sum_probs=160.9

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHH-cCCeEEEEEeccchHHH------------HHHHHHhhCCCCceEEEEeCCCCHH
Q 025275           27 GTGLTAIVTGASSGIGTETARVLAL-RGVHVIMAVRNMAAGKD------------VREAIVKEIPSAKVDAMELDVSSLA   93 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~-~G~~Vi~~~r~~~~~~~------------~~~~~~~~~~~~~~~~~~~Dl~~~~   93 (255)
                      ..+|++|||||++|||+++|+.|++ .|++|++++|+.+.+.+            ..+.+.+.  +.++..+.+|++|++
T Consensus        59 ~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~--G~~a~~i~~Dvtd~~  136 (422)
T 3s8m_A           59 DGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAA--GLYSKSINGDAFSDA  136 (422)
T ss_dssp             SSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTSHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhc--CCcEEEEEecCCCHH
Confidence            3589999999999999999999999 99999999998765432            23444444  668899999999999


Q ss_pred             HHHHHHHHHhcCC-CCeeEEEEccCCC---------------CCC---------------------CCCChHHHHHHHHH
Q 025275           94 SVRKFASEYNSQG-RPLNILINNAGIM---------------ASP---------------------FMLSKDNIELQFAT  136 (255)
Q Consensus        94 si~~~~~~~~~~~-g~id~lv~~ag~~---------------~~~---------------------~~~~~~~~~~~~~~  136 (255)
                      +++++++++.+++ |++|+||||||..               .+.                     .+.+.++|...+++
T Consensus       137 ~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~V  216 (422)
T 3s8m_A          137 ARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITV  216 (422)
T ss_dssp             HHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHh
Confidence            9999999999999 9999999999872               122                     24688999999999


Q ss_pred             HHHHHH-HHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCc--cchHHhHHHHHHHHHHHH
Q 025275          137 NHLGHF-LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF--GAYGQSKLANILHAKELA  213 (255)
Q Consensus       137 n~~~~~-~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~sKaa~~~l~~~la  213 (255)
                      |..+.| ++++++++.+..     .++|+||++||+.+..+               .+.+  ..|++||+|+.+|+|+++
T Consensus       217 n~~~~~~~~~~a~~~~~m~-----~~gG~IVniSSi~g~~~---------------~p~~~~~aY~ASKaAl~~lTrsLA  276 (422)
T 3s8m_A          217 MGGQDWELWIDALEGAGVL-----ADGARSVAFSYIGTEIT---------------WPIYWHGALGKAKVDLDRTAQRLN  276 (422)
T ss_dssp             HSSHHHHHHHHHHHHTTCE-----EEEEEEEEEEECCCGGG---------------HHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred             hchhHHHHHHHHHHHHHHh-----hCCCEEEEEeCchhhcc---------------CCCccchHHHHHHHHHHHHHHHHH
Confidence            999998 788887654332     23689999999997763               2333  789999999999999999


Q ss_pred             HHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          214 KHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       214 ~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      .|++++|  ||||+|+||+|+|++....
T Consensus       277 ~Ela~~G--IRVNaVaPG~i~T~~~~~i  302 (422)
T 3s8m_A          277 ARLAKHG--GGANVAVLKSVVTQASAAI  302 (422)
T ss_dssp             HHHHTTT--CEEEEEEECCCCCTTGGGS
T ss_pred             HHhCccC--EEEEEEEcCCCcChhhhcC
Confidence            9999999  9999999999999998765

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=100.00  E-value=1.1e-33  Score=235.25  Aligned_cols=186  Identities=23%  Similarity=0.323  Sum_probs=159.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ++++++|++|||||+||||++++++|+++|++|++++|+.+++++..+++    +  .+.++.+|++|+++++++++   
T Consensus         2 ~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~--~~~~~~~D~~~~~~~~~~~~---   72 (244)
T 3d3w_A            2 ELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC----P--GIEPVCVDLGDWEATERALG---   72 (244)
T ss_dssp             CCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----T--TCEEEECCTTCHHHHHHHHT---
T ss_pred             ccccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----C--CCCEEEEeCCCHHHHHHHHH---
Confidence            36788999999999999999999999999999999999987665554432    1  35677999999999988876   


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                       .++++|+||||||...  +..+.+.+++.+.+++|+.+++++++++++.+.++    +..++||++||..+..      
T Consensus        73 -~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~----~~~~~iv~~sS~~~~~------  141 (244)
T 3d3w_A           73 -SVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIAR----GVPGAIVNVSSQCSQR------  141 (244)
T ss_dssp             -TCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TCCEEEEEECCGGGTS------
T ss_pred             -HcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC----CCCcEEEEeCchhhcc------
Confidence             5688999999999763  34567889999999999999999999999999863    2268999999988765      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|++++.++++++.++.+.|  |++|+|+||++.|++...
T Consensus       142 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~--i~v~~v~Pg~v~t~~~~~  189 (244)
T 3d3w_A          142 ---------AVTNHSVYCSTKGALDMLTKVMALELGPHK--IRVNAVNPTVVMTSMGQA  189 (244)
T ss_dssp             ---------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBTTTTHHH
T ss_pred             ---------CCCCCchHHHHHHHHHHHHHHHHHHhcccC--eEEEEEEeccccccchhh
Confidence                     445678999999999999999999999888  999999999999998663

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=100.00  E-value=1.3e-34  Score=242.63  Aligned_cols=183  Identities=16%  Similarity=0.128  Sum_probs=157.7

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +..+..+|++|||||++|||+++|++|+++|++|++++|+.+..              .-..+.+|++|.++++++++++
T Consensus        16 ~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~--------------~~~~~~~d~~d~~~v~~~~~~~   81 (251)
T 3orf_A           16 PRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPN--------------ADHSFTIKDSGEEEIKSVIEKI   81 (251)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT--------------SSEEEECSCSSHHHHHHHHHHH
T ss_pred             ccccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc--------------cccceEEEeCCHHHHHHHHHHH
Confidence            33455689999999999999999999999999999999998652              1246789999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          103 NSQGRPLNILINNAGIMAS---PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~---~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      .++++++|+||||||....   ..+.+.+++.+.+++|+.+++++++++++.+++       .|+||++||..+..    
T Consensus        82 ~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-------~g~iv~isS~~~~~----  150 (251)
T 3orf_A           82 NSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQ-------GGLFVLTGASAALN----  150 (251)
T ss_dssp             HTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE-------EEEEEEECCGGGGS----
T ss_pred             HHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhcc-------CCEEEEEechhhcc----
Confidence            9999999999999997642   456778999999999999999999999999854       57999999998876    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHh--hCCCcEEEEEeeCCceecCcccccCc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLK--EDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~--~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                                 +.++...|+++|+++++|+++++.+++  +.|  |++|+|+||+++|++.+....
T Consensus       151 -----------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~g--i~v~~v~PG~v~t~~~~~~~~  203 (251)
T 3orf_A          151 -----------RTSGMIAYGATKAATHHIIKDLASENGGLPAG--STSLGILPVTLDTPTNRKYMS  203 (251)
T ss_dssp             -----------CCTTBHHHHHHHHHHHHHHHHHTSTTSSSCTT--CEEEEEEESCBCCHHHHHHCT
T ss_pred             -----------CCCCCchhHHHHHHHHHHHHHHHHHhcccCCC--cEEEEEecCcCcCcchhhhcc
Confidence                       555778999999999999999999987  667  999999999999998775443

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=100.00  E-value=5.1e-34  Score=237.48  Aligned_cols=199  Identities=28%  Similarity=0.333  Sum_probs=160.4

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++|++|||||+||||++++++|+++|  ++|++++|+.+.++++.+    . .+.++.++.+|++|+++++.+++++.+
T Consensus         1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~----~-~~~~~~~~~~D~~~~~~~~~~~~~~~~   75 (250)
T 1yo6_A            1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS----I-KDSRVHVLPLTVTCDKSLDTFVSKVGE   75 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT----C-CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh----c-cCCceEEEEeecCCHHHHHHHHHHHHH
Confidence            357999999999999999999999999  999999999887654422    2 255799999999999999999999999


Q ss_pred             CCC--CeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-C-----CCeEEEecCCcc
Q 025275          105 QGR--PLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSS-R-----EGRIVNVSSEAH  173 (255)
Q Consensus       105 ~~g--~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~-~-----~g~ii~vsS~~~  173 (255)
                      ++|  ++|+||||||...   +..+.+.+++.+.+++|+.+++++++++++.+.+...... +     .++||++||..+
T Consensus        76 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~  155 (250)
T 1yo6_A           76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG  155 (250)
T ss_dssp             HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred             hcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcc
Confidence            888  8999999999764   3456788999999999999999999999999986311100 2     689999999987


Q ss_pred             ccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          174 RFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      ....+..        ..+..+...|+++|+++++++++++.++.+.|  |++++|+||+++|++.+.
T Consensus       156 ~~~~~~~--------~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  212 (250)
T 1yo6_A          156 SITDNTS--------GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDN--VLVVNFCPGWVQTNLGGK  212 (250)
T ss_dssp             CSTTCCS--------TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGT--CEEEEEECCCC-------
T ss_pred             ccCCccc--------ccccCCccHHHHHHHHHHHHHHHHHHHhccCC--eEEEEEcCCceecCCCCC
Confidence            6532210        01114667899999999999999999999888  999999999999998764

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=100.00  E-value=3.1e-34  Score=242.36  Aligned_cols=190  Identities=25%  Similarity=0.338  Sum_probs=168.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-ccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .+++++|++|||||+||||++++++|+++|++|++++| +.+.+++..+++...  +.++.++.+|++|+++++.+++++
T Consensus        16 ~~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~   93 (274)
T 1ja9_A           16 SKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDKA   93 (274)
T ss_dssp             CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999 666677777777664  557899999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc-ccccc
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR-FAYSE  179 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~-~~~~~  179 (255)
                      .++++++|+||||||...  +..+.+.++|.+.+++|+.+++++++++++.+++       +++||++||..+. .    
T Consensus        94 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-------~~~iv~~sS~~~~~~----  162 (274)
T 1ja9_A           94 VSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRR-------GGRIILTSSIAAVMT----  162 (274)
T ss_dssp             HHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEE-------EEEEEEECCGGGTCC----
T ss_pred             HHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CCEEEEEcChHhccC----
Confidence            999999999999999764  3456788999999999999999999999998863       3799999998876 3    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                                 +.++...|+++|++++.+++.++.++...+  |++++|+||.+.|++..
T Consensus       163 -----------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~g--i~v~~v~Pg~v~t~~~~  209 (274)
T 1ja9_A          163 -----------GIPNHALYAGSKAAVEGFCRAFAVDCGAKG--VTVNCIAPGGVKTDMFD  209 (274)
T ss_dssp             -----------SCCSCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCBSSHHHH
T ss_pred             -----------CCCCCchHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeeCcccccchh
Confidence                       344667899999999999999999999888  99999999999999866

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=100.00  E-value=7.2e-35  Score=242.57  Aligned_cols=179  Identities=16%  Similarity=0.133  Sum_probs=157.9

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .++|++|||||++|||++++++|+++|++|++++|+.+...            ....++++|++|+++++++++++.+++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~v~~~~~~~~~~~   72 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------------SASVIVKMTDSFTEQADQVTAEVGKLL   72 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------------SEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc------------CCcEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999976531            245788999999999999999999988


Q ss_pred             --CCeeEEEEccCCCC--CC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          107 --RPLNILINNAGIMA--SP-FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       107 --g~id~lv~~ag~~~--~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                        +++|+||||||...  +. .+.+.++|.+.+++|+.++++++++++|+|++       +|+||++||..+..      
T Consensus        73 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-------~g~iv~isS~~~~~------  139 (241)
T 1dhr_A           73 GDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE-------GGLLTLAGAKAALD------  139 (241)
T ss_dssp             TTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE-------EEEEEEECCGGGGS------
T ss_pred             CCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc-------CCEEEEECCHHHcc------
Confidence              79999999999764  33 56778999999999999999999999999854       47999999998775      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHh--hCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLK--EDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~--~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++...|+++|+++++|+++++.|+.  +.|  |++|+|+||+++|++.+..
T Consensus       140 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~g--i~v~~v~PG~v~T~~~~~~  190 (241)
T 1dhr_A          140 ---------GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSG--AAAIAVLPVTLDTPMNRKS  190 (241)
T ss_dssp             ---------CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTT--CEEEEEEESCEECHHHHHH
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHhccCCCC--eEEEEEecCcccCcccccc
Confidence                     445678999999999999999999998  777  9999999999999987653

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=100.00  E-value=1e-33  Score=238.60  Aligned_cols=203  Identities=24%  Similarity=0.302  Sum_probs=167.4

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcC---CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRG---VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G---~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      ....+++|++|||||+||||++++++|+++|   ++|++++|+.+..+.+ +++...  +.++.++.+|++|+++++.++
T Consensus        15 ~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~--~~~~~~~~~Dl~~~~~v~~~~   91 (267)
T 1sny_A           15 VPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKN--HSNIHILEIDLRNFDAYDKLV   91 (267)
T ss_dssp             -----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHH--CTTEEEEECCTTCGGGHHHHH
T ss_pred             cccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhcc--CCceEEEEecCCChHHHHHHH
Confidence            4455788999999999999999999999999   9999999998876643 444444  457999999999999999999


Q ss_pred             HHHhcCCC--CeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCCCCeEEEe
Q 025275          100 SEYNSQGR--PLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQK------SSREGRIVNV  168 (255)
Q Consensus       100 ~~~~~~~g--~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~~~~g~ii~v  168 (255)
                      +++.+.++  ++|+||||||...   +..+.+.+++.+.+++|+.+++++++++++.|.+....      ....++||++
T Consensus        92 ~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~i  171 (267)
T 1sny_A           92 ADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINM  171 (267)
T ss_dssp             HHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEE
T ss_pred             HHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEE
Confidence            99999888  8999999999764   34567889999999999999999999999999874111      0115899999


Q ss_pred             cCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          169 SSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       169 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      ||..+....+            +..+...|+++|+++++|++.++.++.+++  |++++|+||+++|++....+
T Consensus       172 sS~~~~~~~~------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~~~  231 (267)
T 1sny_A          172 SSILGSIQGN------------TDGGMYAYRTSKSALNAATKSLSVDLYPQR--IMCVSLHPGWVKTDMGGSSA  231 (267)
T ss_dssp             CCGGGCSTTC------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEECCCSBCSTTTCTTC
T ss_pred             ecccccccCC------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCC--cEEEEeCCcceecCCCCCCC
Confidence            9988765211            123567899999999999999999999888  99999999999999976543

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=100.00  E-value=2.3e-34  Score=241.37  Aligned_cols=181  Identities=18%  Similarity=0.201  Sum_probs=156.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |++|||||++|||++++++|+++|++|++++|+.+.+++..+ +...  +.++..+     |+++++++++++.++++++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~--~~~~~~~-----d~~~v~~~~~~~~~~~g~i   73 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAET--YPQLKPM-----SEQEPAELIEAVTSAYGQV   73 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHH--CTTSEEC-----CCCSHHHHHHHHHHHHSCC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhc--CCcEEEE-----CHHHHHHHHHHHHHHhCCC
Confidence            689999999999999999999999999999999888777655 5554  3345444     5667888999998889999


Q ss_pred             eEEEEccCCC-C--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          110 NILINNAGIM-A--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       110 d~lv~~ag~~-~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      |+||||||.. .  +..+.+.++|++.+++|+.++++++++++|+|++     .+.|+||++||..+..           
T Consensus        74 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~-----------  137 (254)
T 1zmt_A           74 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKK-----RKSGHIIFITSATPFG-----------  137 (254)
T ss_dssp             CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCCEEEEECCSTTTS-----------
T ss_pred             CEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCcEEEEECCccccc-----------
Confidence            9999999976 2  3466889999999999999999999999999987     3468999999998775           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCce---------ecCcccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSI---------VTNLFRY  240 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v---------~t~~~~~  240 (255)
                          +.++...|++||+++++|+++++.+++++|  |++|+|+||++         +|++.+.
T Consensus       138 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~~~~~~~~~~T~~~~~  194 (254)
T 1zmt_A          138 ----PWKELSTYTSARAGACTLANALSKELGEYN--IPVFAIGPNYLHSEDSPYFYPTEPWKT  194 (254)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CCEEEEEESSBCCBTCCSSCBHHHHTT
T ss_pred             ----CCCCchHHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEecCccccccccccCCCccccc
Confidence                445678999999999999999999999988  99999999999         8887653

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=100.00  E-value=1.2e-34  Score=240.51  Aligned_cols=178  Identities=16%  Similarity=0.072  Sum_probs=157.3

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++|++|||||++|||++++++|+++|++|++++|+.+...            ....++.+|++|+++++++++++.+.+
T Consensus         1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~~~~~~~~~~~~~   68 (236)
T 1ooe_A            1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASSL   68 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc------------cccEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            36799999999999999999999999999999999976531            245778999999999999999999988


Q ss_pred             --CCeeEEEEccCCCC--CC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          107 --RPLNILINNAGIMA--SP-FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       107 --g~id~lv~~ag~~~--~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                        +++|+||||||...  +. .+.+.++|++.+++|+.++++++++++|+|++       .|+||++||..+..      
T Consensus        69 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-------~g~iv~isS~~~~~------  135 (236)
T 1ooe_A           69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP-------GGLLQLTGAAAAMG------  135 (236)
T ss_dssp             TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE-------EEEEEEECCGGGGS------
T ss_pred             CCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc-------CCEEEEECchhhcc------
Confidence              79999999999764  33 56678899999999999999999999999854       47999999998775      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHh--hCCCcEEEEEeeCCceecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLK--EDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~--~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                               +.++...|+++|+++++|+++++.++.  ++|  |++|+|+||+++|++.+.
T Consensus       136 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~g--i~v~~v~Pg~v~t~~~~~  185 (236)
T 1ooe_A          136 ---------PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDN--SAVLTIMPVTLDTPMNRK  185 (236)
T ss_dssp             ---------CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTT--CEEEEEEESCBCCHHHHH
T ss_pred             ---------CCCCcHHHHHHHHHHHHHHHHHHHHhcccCCC--eEEEEEecCcccCcchhh
Confidence                     455778999999999999999999998  777  999999999999998764

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=100.00  E-value=1e-34  Score=242.07  Aligned_cols=187  Identities=20%  Similarity=0.158  Sum_probs=137.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |++++|++|||||++|||+++|++|++ |+.|++++|+.+.+++..+       ..++.++.+|++++++ ...+.+..+
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~-------~~~~~~~~~D~~~~~~-~~~~~~~~~   71 (245)
T 3e9n_A            1 MSLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE-------IEGVEPIESDIVKEVL-EEGGVDKLK   71 (245)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT-------STTEEEEECCHHHHHH-TSSSCGGGT
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh-------hcCCcceecccchHHH-HHHHHHHHH
Confidence            467899999999999999999999998 9999999998776554432       2358899999999876 555566667


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|+||||||...  +..+.+.++|.+.+++|+.++++++++++|.+++.      +|+||++||..+..       
T Consensus        72 ~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~------~g~iv~isS~~~~~-------  138 (245)
T 3e9n_A           72 NLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAA------SGCVIYINSGAGNG-------  138 (245)
T ss_dssp             TCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------TCEEEEEC-------------
T ss_pred             hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc------CCeEEEEcCccccc-------
Confidence            7899999999999874  34567889999999999999999999999999862      48999999998876       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                              +.++...|++||+++++|+++++.++.++|  |++|+|+||+++|++.+....
T Consensus       139 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~~~  189 (245)
T 3e9n_A          139 --------PHPGNTIYAASKHALRGLADAFRKEEANNG--IRVSTVSPGPTNTPMLQGLMD  189 (245)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCC----------
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEecCCccCchhhhhhh
Confidence                    455778999999999999999999999988  999999999999998776543

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=100.00  E-value=3.7e-34  Score=235.59  Aligned_cols=166  Identities=25%  Similarity=0.253  Sum_probs=147.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++++|++|||||++|||+++|++|+++|++|++++|+.+                      +|++|+++++++++++  
T Consensus         2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----------------------~D~~~~~~v~~~~~~~--   57 (223)
T 3uce_A            2 MGSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG----------------------LDISDEKSVYHYFETI--   57 (223)
T ss_dssp             ---CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT----------------------CCTTCHHHHHHHHHHH--
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc----------------------cCCCCHHHHHHHHHHh--
Confidence            5678999999999999999999999999999999998864                      7999999999999876  


Q ss_pred             CCCCeeEEEEccCCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                        +++|+||||||..   .+..+.+.++|++.+++|+.++++++++++|+|++       .|+||++||..+..      
T Consensus        58 --g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-------~g~iv~~sS~~~~~------  122 (223)
T 3uce_A           58 --GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQ-------GGSITLTSGMLSRK------  122 (223)
T ss_dssp             --CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEE-------EEEEEEECCGGGTS------
T ss_pred             --CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccC-------CeEEEEecchhhcc------
Confidence              7899999999976   34567899999999999999999999999999864       57999999998776      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                               +.++...|+++|+++++|+++++.|+.+    |+||+|+||+++|++.+...
T Consensus       123 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~----i~vn~v~PG~v~t~~~~~~~  170 (223)
T 3uce_A          123 ---------VVANTYVKAAINAAIEATTKVLAKELAP----IRVNAISPGLTKTEAYKGMN  170 (223)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHTT----SEEEEEEECSBCSGGGTTSC
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHhhcC----cEEEEEEeCCCcchhhhhcc
Confidence                     5557789999999999999999999985    99999999999999877544

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=100.00  E-value=2.1e-35  Score=256.75  Aligned_cols=191  Identities=17%  Similarity=0.228  Sum_probs=159.2

Q ss_pred             CCcEEEEecCCC--chHHHHHHHHHHcCCeEEEEEeccc---------hHHHHHHHHHhh-CCCCceEEEEeCCCCH--H
Q 025275           28 TGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMA---------AGKDVREAIVKE-IPSAKVDAMELDVSSL--A   93 (255)
Q Consensus        28 ~~k~vlItG~s~--giG~~ia~~L~~~G~~Vi~~~r~~~---------~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~--~   93 (255)
                      ++|++|||||++  |||+++|++|+++|++|++++|+..         +++...+..... .....+.++++|+++.  +
T Consensus         1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~   80 (329)
T 3lt0_A            1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred             CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence            479999999986  9999999999999999998887652         111111111110 0123478899999988  7


Q ss_pred             ------------------HHHHHHHHHhcCCCCeeEEEEccCCC----CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 025275           94 ------------------SVRKFASEYNSQGRPLNILINNAGIM----ASPFMLSKDNIELQFATNHLGHFLLTHLLLDT  151 (255)
Q Consensus        94 ------------------si~~~~~~~~~~~g~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  151 (255)
                                        +++++++++.+++|++|+||||||+.    .++.+.+.++|++++++|+.|+++++++++|+
T Consensus        81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~  160 (329)
T 3lt0_A           81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                              99999999999999999999999963    34567899999999999999999999999999


Q ss_pred             HHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCcc-chHHhHHHHHHHHHHHHHHHhh-CCCcEEEEEee
Q 025275          152 MKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG-AYGQSKLANILHAKELAKHLKE-DGVNITANSLH  229 (255)
Q Consensus       152 ~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~sKaa~~~l~~~la~~~~~-~~~~i~vn~v~  229 (255)
                      |++       .|+||++||..+..               +.+... .|++||+|+.+|+++++.|+.+ +|  |+||+|+
T Consensus       161 m~~-------~g~Iv~isS~~~~~---------------~~~~~~~~Y~asKaal~~~~~~la~el~~~~g--I~vn~v~  216 (329)
T 3lt0_A          161 MKP-------QSSIISLTYHASQK---------------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYN--IRINTIS  216 (329)
T ss_dssp             EEE-------EEEEEEEECGGGTS---------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHC--CEEEEEE
T ss_pred             Hhh-------CCeEEEEeCccccC---------------CCCcchHHHHHHHHHHHHHHHHHHHHhCCccC--eEEEEEe
Confidence            975       38999999999876               445664 8999999999999999999998 78  9999999


Q ss_pred             CCceecCcccccC
Q 025275          230 PGSIVTNLFRYNG  242 (255)
Q Consensus       230 PG~v~t~~~~~~~  242 (255)
                      ||+|+|+|.+...
T Consensus       217 PG~v~T~~~~~~~  229 (329)
T 3lt0_A          217 AGPLKSRAATAIN  229 (329)
T ss_dssp             ECCCCCHHHHTCC
T ss_pred             cceeechhHhhhh
Confidence            9999999988653

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=100.00  E-value=1.7e-33  Score=254.21  Aligned_cols=191  Identities=29%  Similarity=0.317  Sum_probs=160.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ..+++|++|||||++|||+++|++|+++|++|++++|+.. .++..+.....    .+.++.||++|.++++++++++.+
T Consensus       209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~-~~~l~~~~~~~----~~~~~~~Dvtd~~~v~~~~~~~~~  283 (454)
T 3u0b_A          209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA-AEDLKRVADKV----GGTALTLDVTADDAVDKITAHVTE  283 (454)
T ss_dssp             STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGG-HHHHHHHHHHH----TCEEEECCTTSTTHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCcc-HHHHHHHHHHc----CCeEEEEecCCHHHHHHHHHHHHH
Confidence            3468999999999999999999999999999999998753 22222222222    356899999999999999999999


Q ss_pred             CCCC-eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRP-LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~-id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      ++++ +|+||||||+..  +..+.+.++|++++++|+.|++++++++.+.|.+     ++.++||++||..+..      
T Consensus       284 ~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~-----~~~g~iV~iSS~a~~~------  352 (454)
T 3u0b_A          284 HHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTI-----GEGGRVIGLSSMAGIA------  352 (454)
T ss_dssp             HSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSS-----CTTCEEEEECCHHHHH------
T ss_pred             HcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCCEEEEEeChHhCC------
Confidence            9976 999999999874  3467899999999999999999999999998875     4678999999999887      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                               +.+++..|+++|+++.+|+++++.++.++|  |++|+|+||+++|+|.+...
T Consensus       353 ---------g~~g~~~YaasKaal~~l~~~la~e~~~~g--I~vn~v~PG~v~T~~~~~~~  402 (454)
T 3u0b_A          353 ---------GNRGQTNYATTKAGMIGLAEALAPVLADKG--ITINAVAPGFIETKMTEAIP  402 (454)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEEECSBCC-------
T ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHHHhhhcC--cEEEEEEcCcccChhhhhcc
Confidence                     555788999999999999999999999988  99999999999999987643

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=100.00  E-value=4.5e-33  Score=231.54  Aligned_cols=184  Identities=25%  Similarity=0.406  Sum_probs=158.4

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++    +  .+.++.+|++|+++++++++    
T Consensus         3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~--~~~~~~~D~~~~~~~~~~~~----   72 (244)
T 1cyd_A            3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----P--GIEPVCVDLGDWDATEKALG----   72 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----T--TCEEEECCTTCHHHHHHHHT----
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----c--CCCcEEecCCCHHHHHHHHH----
Confidence            5678999999999999999999999999999999999987665544331    2  35677999999999988877    


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .++++|+||||||...  +..+.+.++|.+.+++|+.+++++++++++.+.++    +..++||++||..+..       
T Consensus        73 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----~~~~~iv~~sS~~~~~-------  141 (244)
T 1cyd_A           73 GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINR----GVPGSIVNVSSMVAHV-------  141 (244)
T ss_dssp             TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TCCEEEEEECCGGGTS-------
T ss_pred             HcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhC----CCCeEEEEEcchhhcC-------
Confidence            5678999999999763  34567889999999999999999999999999862    1268999999988765       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                              +.++...|+++|++++.+++.++.++...+  |++++|+||++.|++..
T Consensus       142 --------~~~~~~~Y~~sK~a~~~~~~~~a~~~~~~g--i~v~~v~pg~v~t~~~~  188 (244)
T 1cyd_A          142 --------TFPNLITYSSTKGAMTMLTKAMAMELGPHK--IRVNSVNPTVVLTDMGK  188 (244)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBTTHHHH
T ss_pred             --------CCCCcchhHHHHHHHHHHHHHHHHHhhhcC--eEEEEEecCcccCcccc
Confidence                    444677899999999999999999999888  99999999999999865

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=100.00  E-value=1.7e-33  Score=262.95  Aligned_cols=194  Identities=25%  Similarity=0.265  Sum_probs=150.4

Q ss_pred             cccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe---------ccchHHHHHHHHHhhCCCCceEEEEeCC
Q 025275           19 EEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR---------NMAAGKDVREAIVKEIPSAKVDAMELDV   89 (255)
Q Consensus        19 ~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r---------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl   89 (255)
                      ......++++||++|||||++|||+++|++|+++|++|++++|         +.+.+++..+++...  +..   ..+|+
T Consensus         9 ~~~~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~--~~~---~~~D~   83 (613)
T 3oml_A            9 SSSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKA--GGE---AVADY   83 (613)
T ss_dssp             ------CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHT--TCC---EEECC
T ss_pred             cCcccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHh--CCe---EEEEe
Confidence            3444667899999999999999999999999999999999988         777788888888765  333   24799


Q ss_pred             CCHHHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEE
Q 025275           90 SSLASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVN  167 (255)
Q Consensus        90 ~~~~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~  167 (255)
                      +|.++++++++++.+.+|++|+||||||+..  ++.+.+.++|.+++++|+.|+++++++++|+|++     ++.|+||+
T Consensus        84 ~d~~~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~-----~~~g~IV~  158 (613)
T 3oml_A           84 NSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKK-----QNYGRIIM  158 (613)
T ss_dssp             CCGGGHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCEEEE
Confidence            9999999999999999999999999999874  4567899999999999999999999999999987     56789999


Q ss_pred             ecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          168 VSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       168 vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      +||.++..               +.++...|++||+|+.+|+++++.|+++.|  |+||+|+||.+ |++...
T Consensus       159 isS~a~~~---------------~~~~~~~Y~asKaal~~lt~~la~e~~~~g--I~vn~v~Pg~~-t~~~~~  213 (613)
T 3oml_A          159 TSSNSGIY---------------GNFGQVNYTAAKMGLIGLANTVAIEGARNN--VLCNVIVPTAA-SRMTEG  213 (613)
T ss_dssp             ECCHHHHH---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEEC-------CC
T ss_pred             ECCHHHcC---------------CCCCChHHHHHHHHHHHHHHHHHHHhCccC--eEEEEEECCCC-Chhhhh
Confidence            99999887               455778999999999999999999999998  99999999975 666544

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=100.00  E-value=3.3e-33  Score=235.71  Aligned_cols=202  Identities=27%  Similarity=0.332  Sum_probs=165.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHH-cCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLAL-RGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .++|++|||||+||||++++++|++ +|++|++++|+.+.+++..+++...  +.++.++.+|++|.++++.+++++.++
T Consensus         2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            4679999999999999999999999 9999999999988888888888765  557899999999999999999999999


Q ss_pred             CCCeeEEEEccCCCCCC-CCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc-
Q 025275          106 GRPLNILINNAGIMASP-FMLS-KDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR-  182 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~-~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~-  182 (255)
                      ++++|+||||||..... ...+ .+++.+.+++|+.+++++++++++.+++       .|+||++||..+..+.+...+ 
T Consensus        80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-------~g~iv~~sS~~~~~~~~~~~~~  152 (276)
T 1wma_A           80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP-------QGRVVNVSSIMSVRALKSCSPE  152 (276)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE-------EEEEEEECCHHHHHHHHTSCHH
T ss_pred             cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCC-------CCEEEEECChhhhcccccCChh
Confidence            99999999999976432 2333 5889999999999999999999998754       479999999887643111000 


Q ss_pred             ------CCCCCc--------------------ccCCCCccchHHhHHHHHHHHHHHHHHHhh----CCCcEEEEEeeCCc
Q 025275          183 ------FDKIND--------------------ESAYNSFGAYGQSKLANILHAKELAKHLKE----DGVNITANSLHPGS  232 (255)
Q Consensus       183 ------~~~~~~--------------------~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~----~~~~i~vn~v~PG~  232 (255)
                            ...+.+                    ..+. +...|+++|++++.+++.++.++.+    .|  |++|+|+||+
T Consensus       153 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~--i~v~~v~PG~  229 (276)
T 1wma_A          153 LQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGW-PSSAYGVTKIGVTVLSRIHARKLSEQRKGDK--ILLNACCPGW  229 (276)
T ss_dssp             HHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTC-CSCHHHHHHHHHHHHHHHHHHHHHHHCTTSC--CEEEEEECCS
T ss_pred             HHhhccccccchhhhhhhhhhhhhhhcccccccCCC-ccchhHHHHHHHHHHHHHHHHHhhcccCCCc--eEEEEecCCc
Confidence                  000000                    0012 2378999999999999999999987    56  9999999999


Q ss_pred             eecCcccc
Q 025275          233 IVTNLFRY  240 (255)
Q Consensus       233 v~t~~~~~  240 (255)
                      ++|++.+.
T Consensus       230 v~t~~~~~  237 (276)
T 1wma_A          230 VRTDMAGP  237 (276)
T ss_dssp             BCSTTTCT
T ss_pred             cccCcCCc
Confidence            99998764

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=100.00  E-value=5.1e-34  Score=246.55  Aligned_cols=195  Identities=18%  Similarity=0.155  Sum_probs=153.9

Q ss_pred             cCCCCCCcEEEEecC--CCchHHHHHHHHHHcCCeEEEEEeccc------hHH-HHHHHHHhhCCCC---ceEEEEeCC-
Q 025275           23 QGIDGTGLTAIVTGA--SSGIGTETARVLALRGVHVIMAVRNMA------AGK-DVREAIVKEIPSA---KVDAMELDV-   89 (255)
Q Consensus        23 ~~~~~~~k~vlItG~--s~giG~~ia~~L~~~G~~Vi~~~r~~~------~~~-~~~~~~~~~~~~~---~~~~~~~Dl-   89 (255)
                      ..+++++|++|||||  ++|||+++|++|+++|++|++++|+..      ... ...+++.....+.   .+.++.+|+ 
T Consensus         3 ~~~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (315)
T 2o2s_A            3 FPIDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAA   82 (315)
T ss_dssp             -CCCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTT
T ss_pred             CcccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhcccccccccccccccc
Confidence            346689999999999  899999999999999999999998641      000 0111122111111   134454443 


Q ss_pred             -----------C--------CHHHHHHHHHHHhcCCCCeeEEEEccCCC----CCCCCCChHHHHHHHHHHHHHHHHHHH
Q 025275           90 -----------S--------SLASVRKFASEYNSQGRPLNILINNAGIM----ASPFMLSKDNIELQFATNHLGHFLLTH  146 (255)
Q Consensus        90 -----------~--------~~~si~~~~~~~~~~~g~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~~~~~~~~  146 (255)
                                 +        |+++++.+++++.+++|++|+||||||+.    .++.+.+.++|.+.+++|+.+++++++
T Consensus        83 ~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~  162 (315)
T 2o2s_A           83 FDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQ  162 (315)
T ss_dssp             CSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHH
Confidence                       3        35689999999999999999999999965    345678899999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCc-cchHHhHHHHHHHHHHHHHHHhh-CCCcEE
Q 025275          147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF-GAYGQSKLANILHAKELAKHLKE-DGVNIT  224 (255)
Q Consensus       147 ~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sKaa~~~l~~~la~~~~~-~~~~i~  224 (255)
                      +++|+|++       +|+||++||..+..               +.++. ..|++||+|+.+|+++++.|+.+ +|  |+
T Consensus       163 ~~~~~m~~-------~g~Iv~isS~~~~~---------------~~~~~~~~Y~asKaal~~l~~~la~el~~~~g--Ir  218 (315)
T 2o2s_A          163 HFGPIMNE-------GGSAVTLSYLAAER---------------VVPGYGGGMSSAKAALESDTRTLAWEAGQKYG--VR  218 (315)
T ss_dssp             HHSTTEEE-------EEEEEEEEEGGGTS---------------CCTTCCTTHHHHHHHHHHHHHHHHHHHHHHTC--CE
T ss_pred             HHHHHHhc-------CCEEEEEecccccc---------------cCCCccHHHHHHHHHHHHHHHHHHHHhCcccC--eE
Confidence            99999864       48999999998765               33444 48999999999999999999985 78  99


Q ss_pred             EEEeeCCceecCccccc
Q 025275          225 ANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       225 vn~v~PG~v~t~~~~~~  241 (255)
                      ||+|+||+|+|++.+..
T Consensus       219 vn~v~PG~v~T~~~~~~  235 (315)
T 2o2s_A          219 VNAISAGPLKSRAASAI  235 (315)
T ss_dssp             EEEEEECCCCCHHHHHT
T ss_pred             EEEEecccccchhhhhc
Confidence            99999999999987654

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=100.00  E-value=8.7e-33  Score=231.21  Aligned_cols=179  Identities=22%  Similarity=0.213  Sum_probs=151.7

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ....+++|++|||||+||||++++++|+++|++|++++|+.+.    .+++     + ++.++ +|+  .++++.+++++
T Consensus        13 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~----~~~~-----~-~~~~~-~D~--~~~~~~~~~~~   79 (249)
T 1o5i_A           13 MELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEEL----LKRS-----G-HRYVV-CDL--RKDLDLLFEKV   79 (249)
T ss_dssp             ---CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHT-----C-SEEEE-CCT--TTCHHHHHHHS
T ss_pred             HHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH----HHhh-----C-CeEEE-eeH--HHHHHHHHHHh
Confidence            4456889999999999999999999999999999999998632    2221     2 56777 999  45678888776


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .    ++|+||||||...  ++.+.+.++|.+.+++|+.++++++++++|.|.+     .+.|+||++||..+..     
T Consensus        80 ~----~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----~~~g~iv~isS~~~~~-----  145 (249)
T 1o5i_A           80 K----EVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKE-----KGWGRIVAITSFSVIS-----  145 (249)
T ss_dssp             C----CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS-----
T ss_pred             c----CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCcEEEEEcchHhcC-----
Confidence            4    7999999999763  3456889999999999999999999999999987     3468999999998765     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                +.++...|+++|+++++|+++++.|+.++|  |++|+|+||+++|++...
T Consensus       146 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~Pg~v~t~~~~~  193 (249)
T 1o5i_A          146 ----------PIENLYTSNSARMALTGFLKTLSFEVAPYG--ITVNCVAPGWTETERVKE  193 (249)
T ss_dssp             ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCTTHHH
T ss_pred             ----------CCCCCchHHHHHHHHHHHHHHHHHHhhhcC--eEEEEEeeCCCccCcccc
Confidence                      445678999999999999999999999988  999999999999998754

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=100.00  E-value=6e-34  Score=246.46  Aligned_cols=194  Identities=18%  Similarity=0.191  Sum_probs=132.9

Q ss_pred             CCCCCCcEEEEecC--CCchHHHHHHHHHHcCCeEEEEEecc-----------chHH-----------HHHHHHHhhCCC
Q 025275           24 GIDGTGLTAIVTGA--SSGIGTETARVLALRGVHVIMAVRNM-----------AAGK-----------DVREAIVKEIPS   79 (255)
Q Consensus        24 ~~~~~~k~vlItG~--s~giG~~ia~~L~~~G~~Vi~~~r~~-----------~~~~-----------~~~~~~~~~~~~   79 (255)
                      .+++++|++|||||  ++|||+++|++|+++|++|++++|+.           +.++           ++.+++.+....
T Consensus         4 ~~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (319)
T 2ptg_A            4 PVDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVD   83 (319)
T ss_dssp             CCCCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC-------------------------------
T ss_pred             ccccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccc
Confidence            45688999999999  89999999999999999999998752           2222           122222221000


Q ss_pred             -CceEEEEeCC------------CC--------HHHHHHHHHHHhcCCCCeeEEEEccCCC----CCCCCCChHHHHHHH
Q 025275           80 -AKVDAMELDV------------SS--------LASVRKFASEYNSQGRPLNILINNAGIM----ASPFMLSKDNIELQF  134 (255)
Q Consensus        80 -~~~~~~~~Dl------------~~--------~~si~~~~~~~~~~~g~id~lv~~ag~~----~~~~~~~~~~~~~~~  134 (255)
                       ....++.+|+            +|        +++++.+++++.+++|++|+||||||+.    .++.+.+.++|++++
T Consensus        84 ~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~  163 (319)
T 2ptg_A           84 LVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAV  163 (319)
T ss_dssp             -CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHH
T ss_pred             ccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHH
Confidence             0124444442            22        3479999999999999999999999964    345678899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCc-cchHHhHHHHHHHHHHHH
Q 025275          135 ATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF-GAYGQSKLANILHAKELA  213 (255)
Q Consensus       135 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sKaa~~~l~~~la  213 (255)
                      ++|+.++++++++++|+|.+       .|+||++||..+..               +.++. ..|++||+|+.+|+++++
T Consensus       164 ~vN~~g~~~l~~~~~~~m~~-------~g~Iv~isS~~~~~---------------~~~~~~~~Y~asKaal~~l~~~la  221 (319)
T 2ptg_A          164 SSSSYSFVSLLQHFLPLMKE-------GGSALALSYIASEK---------------VIPGYGGGMSSAKAALESDCRTLA  221 (319)
T ss_dssp             HHHTHHHHHHHHHHGGGEEE-------EEEEEEEEECC---------------------------------THHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHHHHhc-------CceEEEEecccccc---------------ccCccchhhHHHHHHHHHHHHHHH
Confidence            99999999999999999964       38999999998765               33444 589999999999999999


Q ss_pred             HHHhh-CCCcEEEEEeeCCceecCccccc
Q 025275          214 KHLKE-DGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       214 ~~~~~-~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      .|+.+ +|  |+||+|+||+|+|++.+..
T Consensus       222 ~el~~~~g--Irvn~v~PG~v~T~~~~~~  248 (319)
T 2ptg_A          222 FEAGRARA--VRVNCISAGPLKSRAASAI  248 (319)
T ss_dssp             HHHHHHHC--CEEEEEEECCCC-------
T ss_pred             HHhccccC--eeEEEEeeCCccChhhhhc
Confidence            99985 78  9999999999999987654

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=100.00  E-value=1.7e-33  Score=241.21  Aligned_cols=194  Identities=17%  Similarity=0.162  Sum_probs=152.6

Q ss_pred             CCCCCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchH--H-----HHHHHHHhhCCCC---ceEEEEeC---
Q 025275           24 GIDGTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAG--K-----DVREAIVKEIPSA---KVDAMELD---   88 (255)
Q Consensus        24 ~~~~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~--~-----~~~~~~~~~~~~~---~~~~~~~D---   88 (255)
                      .+++++|++|||||+  +|||+++|++|+++|++|++++|+....  .     +..+++.+...+.   ....+.+|   
T Consensus         3 ~~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
T 1d7o_A            3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF   82 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred             ccccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceec
Confidence            467889999999999  9999999999999999999999763110  0     0001111110011   12344444   


Q ss_pred             -----CCC------------HHHHHHHHHHHhcCCCCeeEEEEccCCC----CCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 025275           89 -----VSS------------LASVRKFASEYNSQGRPLNILINNAGIM----ASPFMLSKDNIELQFATNHLGHFLLTHL  147 (255)
Q Consensus        89 -----l~~------------~~si~~~~~~~~~~~g~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~~~~~~~~~  147 (255)
                           +++            +++++.+++++.+++|++|+||||||+.    .+..+.+.++|++.+++|+.++++++++
T Consensus        83 ~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~  162 (297)
T 1d7o_A           83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH  162 (297)
T ss_dssp             CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHH
Confidence                 322            5679999999999999999999999964    3456788999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCc-cchHHhHHHHHHHHHHHHHHHhh-CCCcEEE
Q 025275          148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF-GAYGQSKLANILHAKELAKHLKE-DGVNITA  225 (255)
Q Consensus       148 ~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sKaa~~~l~~~la~~~~~-~~~~i~v  225 (255)
                      ++|+|++       +|+||++||..+..               +.++. ..|++||+|+++|+++++.|+.+ +|  |+|
T Consensus       163 ~~~~m~~-------~g~iv~isS~~~~~---------------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~g--i~v  218 (297)
T 1d7o_A          163 FLPIMNP-------GGASISLTYIASER---------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKQN--IRV  218 (297)
T ss_dssp             HGGGEEE-------EEEEEEEECGGGTS---------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHC--CEE
T ss_pred             HHHHhcc-------CceEEEEecccccc---------------CCCCcchHHHHHHHHHHHHHHHHHHHhCcccC--cEE
Confidence            9999854       47999999988765               33454 58999999999999999999985 77  999


Q ss_pred             EEeeCCceecCccccc
Q 025275          226 NSLHPGSIVTNLFRYN  241 (255)
Q Consensus       226 n~v~PG~v~t~~~~~~  241 (255)
                      |+|+||+++|++.+..
T Consensus       219 n~v~PG~v~T~~~~~~  234 (297)
T 1d7o_A          219 NTISAGPLGSRAAKAI  234 (297)
T ss_dssp             EEEEECCCBCCCSSCC
T ss_pred             EEEeccccccchhhhc
Confidence            9999999999987653

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=100.00  E-value=1.4e-32  Score=244.56  Aligned_cols=192  Identities=17%  Similarity=0.063  Sum_probs=161.2

Q ss_pred             CCCcEEEEecCCCchHHH--HHHHHHHcCCeEEEEEeccchH------------HHHHHHHHhhCCCCceEEEEeCCCCH
Q 025275           27 GTGLTAIVTGASSGIGTE--TARVLALRGVHVIMAVRNMAAG------------KDVREAIVKEIPSAKVDAMELDVSSL   92 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~--ia~~L~~~G~~Vi~~~r~~~~~------------~~~~~~~~~~~~~~~~~~~~~Dl~~~   92 (255)
                      ..+|++|||||++|||++  +++.|++.|++|++++|+.+..            +...+.+.+.  +.++.++.+|++|+
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dvtd~  135 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKK--GLVAKNFIEDAFSN  135 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHc--CCcEEEEEeeCCCH
Confidence            679999999999999999  9999999999999999976542            3333333333  56789999999999


Q ss_pred             HHHHHHHHHHhcCCCCeeEEEEccCCC---------------CCC---------------------CCCChHHHHHHHHH
Q 025275           93 ASVRKFASEYNSQGRPLNILINNAGIM---------------ASP---------------------FMLSKDNIELQFAT  136 (255)
Q Consensus        93 ~si~~~~~~~~~~~g~id~lv~~ag~~---------------~~~---------------------~~~~~~~~~~~~~~  136 (255)
                      ++++++++++.+++|++|+||||||..               .+.                     .+.+.++|...+++
T Consensus       136 ~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~v  215 (418)
T 4eue_A          136 ETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKV  215 (418)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence            999999999999999999999999974               122                     24588999999999


Q ss_pred             HHHHHH-HHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCc--cchHHhHHHHHHHHHHHH
Q 025275          137 NHLGHF-LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF--GAYGQSKLANILHAKELA  213 (255)
Q Consensus       137 n~~~~~-~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~sKaa~~~l~~~la  213 (255)
                      |..+.| ++++++.+.+..     .++|+||++||+.+..               +.+.+  ..|++||+|+.+|+++|+
T Consensus       216 n~~~~~~~~~~~l~~~~~~-----~~gg~IV~iSSi~~~~---------------~~p~~~~~aY~ASKaAL~~ltrsLA  275 (418)
T 4eue_A          216 MGGEDWQEWCEELLYEDCF-----SDKATTIAYSYIGSPR---------------TYKIYREGTIGIAKKDLEDKAKLIN  275 (418)
T ss_dssp             HSSHHHHHHHHHHHHTTCE-----EEEEEEEEEECCCCGG---------------GTTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhh-----cCCcEEEEEeCchhcC---------------CCCccccHHHHHHHHHHHHHHHHHH
Confidence            999998 777777655433     2468999999998766               44455  899999999999999999


Q ss_pred             HHHhh-CCCcEEEEEeeCCceecCcccccC
Q 025275          214 KHLKE-DGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       214 ~~~~~-~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      .|+++ .|  ||||+|+||.|+|++....+
T Consensus       276 ~ELa~~~G--IrVN~V~PG~v~T~~s~~ip  303 (418)
T 4eue_A          276 EKLNRVIG--GRAFVSVNKALVTKASAYIP  303 (418)
T ss_dssp             HHHHHHHS--CEEEEEECCCCCCHHHHTST
T ss_pred             HHhCCccC--eEEEEEECCcCcChhhhcCC
Confidence            99999 88  99999999999999887654

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=100.00  E-value=1.2e-31  Score=222.46  Aligned_cols=182  Identities=25%  Similarity=0.278  Sum_probs=154.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++|++|||||+||||++++++|+++|++|++++|+.+ .             .++.++++|++|+++++++++++ +.++
T Consensus         1 ~~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~-------------~~~~~~~~D~~~~~~~~~~~~~~-~~~~   65 (242)
T 1uay_A            1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G-------------EDLIYVEGDVTREEDVRRAVARA-QEEA   65 (242)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S-------------SSSEEEECCTTCHHHHHHHHHHH-HHHS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c-------------cceEEEeCCCCCHHHHHHHHHHH-HhhC
Confidence            3689999999999999999999999999999999875 1             14588999999999999999999 7788


Q ss_pred             CeeEEEEccCCCCC--CCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCeEEEecCCccccccccC
Q 025275          108 PLNILINNAGIMAS--PFML----SKDNIELQFATNHLGHFLLTHLLLDTMKKTAQK-SSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       108 ~id~lv~~ag~~~~--~~~~----~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      ++|++|||||....  ..+.    +.+++.+.+++|+.+++++++++++.+.+.... .+..++||++||..+..     
T Consensus        66 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-----  140 (242)
T 1uay_A           66 PLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE-----  140 (242)
T ss_dssp             CEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH-----
T ss_pred             CceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc-----
Confidence            99999999997642  2333    345999999999999999999999999762100 01235999999998776     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                +.++...|+++|++++.++++++.++.+.|  |++|+|+||+++|++....
T Consensus       141 ----------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~g--i~v~~v~Pg~v~t~~~~~~  189 (242)
T 1uay_A          141 ----------GQIGQAAYAASKGGVVALTLPAARELAGWG--IRVVTVAPGLFDTPLLQGL  189 (242)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSCSSHHHHTS
T ss_pred             ----------CCCCCchhhHHHHHHHHHHHHHHHHHhhcC--cEEEEEEeccCcchhhhcc
Confidence                      444678999999999999999999999888  9999999999999987643

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.97  E-value=1.5e-31  Score=224.06  Aligned_cols=182  Identities=20%  Similarity=0.231  Sum_probs=137.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |++|||||+||||++++++|+++|++|++++|+.++++.              . +++|++|.++++++++++   ++++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~--------------~-~~~Dl~~~~~v~~~~~~~---~~~i   63 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA--------------D-LSTAEGRKQAIADVLAKC---SKGM   63 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC--------------C-TTSHHHHHHHHHHHHTTC---TTCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc--------------c-cccCCCCHHHHHHHHHHh---CCCC
Confidence            689999999999999999999999999999998765321              1 678999999998888743   3789


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC----
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK----  185 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~----  185 (255)
                      |+||||||...+.     +.|++.+++|+.++++++++++|.|.+     .+.|+||++||..+........+...    
T Consensus        64 d~lv~~Ag~~~~~-----~~~~~~~~~N~~g~~~l~~~~~~~~~~-----~~~g~iv~isS~~~~~~~~~~~~~~~~~~~  133 (257)
T 1fjh_A           64 DGLVLCAGLGPQT-----KVLGNVVSVNYFGATELMDAFLPALKK-----GHQPAAVVISSVASAHLAFDKNPLALALEA  133 (257)
T ss_dssp             SEEEECCCCCTTC-----SSHHHHHHHHTHHHHHHHHHHHHHHHT-----SSSCEEEEECCGGGGSSCGGGCTTHHHHHH
T ss_pred             CEEEECCCCCCCc-----ccHHHHHHHhhHHHHHHHHHHHHHHhh-----cCCcEEEEECChhhhccccccchhhhhhcc
Confidence            9999999975421     248899999999999999999999986     45689999999987732110000000    


Q ss_pred             ---------CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          186 ---------INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       186 ---------~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               .....+.++...|++||++++.++++++.++.++|  |++|+|+||+++|++.+..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g--i~v~~v~PG~v~t~~~~~~  196 (257)
T 1fjh_A          134 GEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAG--VRLNTIAPGATETPLLQAG  196 (257)
T ss_dssp             TCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTT--CEEEEEEECC---------
T ss_pred             cchhhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcC--eEEEEEeeCCCCCccchhh
Confidence                     00001334567899999999999999999999888  9999999999999987654

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.97  E-value=7.6e-30  Score=234.14  Aligned_cols=183  Identities=17%  Similarity=0.157  Sum_probs=157.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCe-EEEE-Eec-------------cchHHHHHHHHHhhCCCCceEEEEeCCCCH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVH-VIMA-VRN-------------MAAGKDVREAIVKEIPSAKVDAMELDVSSL   92 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~-Vi~~-~r~-------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   92 (255)
                      .++++|||||+||||.++|++|+++|++ |+++ +|+             .+.+++..+++.+.  +.++.++.||++|.
T Consensus       250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dvtd~  327 (525)
T 3qp9_A          250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADL--GATATVVTCDLTDA  327 (525)
T ss_dssp             TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHH--TCEEEEEECCTTSH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhc--CCEEEEEECCCCCH
Confidence            5799999999999999999999999997 7777 888             35567778888776  67899999999999


Q ss_pred             HHHHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCeEEEec
Q 025275           93 ASVRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSR-EGRIVNVS  169 (255)
Q Consensus        93 ~si~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~g~ii~vs  169 (255)
                      +++..+++++. +++++|+||||||+..  +..+.+.+++.+++++|+.|++++.+++.+.+++     ++ .++||++|
T Consensus       328 ~~v~~~~~~i~-~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~-----~~~~~~iV~~S  401 (525)
T 3qp9_A          328 EAAARLLAGVS-DAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAA-----GGRPPVLVLFS  401 (525)
T ss_dssp             HHHHHHHHTSC-TTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC---------CCCEEEEEE
T ss_pred             HHHHHHHHHHH-hcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhcccccc-----CCCCCEEEEEC
Confidence            99999999998 7899999999999874  4567899999999999999999999999999875     23 68999999


Q ss_pred             CCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          170 SEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       170 S~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      |+++..               +.+++..|+++|+++.+|    +.++..+|  |++++|+||+++|+|..
T Consensus       402 S~a~~~---------------g~~g~~~YaaaKa~l~~l----A~~~~~~g--i~v~sI~pG~~~tgm~~  450 (525)
T 3qp9_A          402 SVAAIW---------------GGAGQGAYAAGTAFLDAL----AGQHRADG--PTVTSVAWSPWEGSRVT  450 (525)
T ss_dssp             EGGGTT---------------CCTTCHHHHHHHHHHHHH----HTSCCSSC--CEEEEEEECCBTTSGGG
T ss_pred             CHHHcC---------------CCCCCHHHHHHHHHHHHH----HHHHHhCC--CCEEEEECCcccccccc
Confidence            999887               555788999999988776    45667777  99999999999999974

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.97  E-value=5e-30  Score=207.87  Aligned_cols=173  Identities=20%  Similarity=0.271  Sum_probs=146.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |++|||||+||||++++++|+++  +|++++|+.+.+++..+++     ..  .++.+|++|++++++++++    ++++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~-----~~--~~~~~D~~~~~~~~~~~~~----~~~i   67 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREV-----GA--RALPADLADELEAKALLEE----AGPL   67 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHH-----TC--EECCCCTTSHHHHHHHHHH----HCSE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhc-----cC--cEEEeeCCCHHHHHHHHHh----cCCC
Confidence            57999999999999999999998  9999999987766655544     11  7889999999999999987    6789


Q ss_pred             eEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          110 NILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       110 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      |+||||||...  +..+.+.+++.+.+++|+.+++++++++    .+     .+.++||++||..+..            
T Consensus        68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~~-----~~~~~iv~~sS~~~~~------------  126 (207)
T 2yut_A           68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHA----RF-----QKGARAVFFGAYPRYV------------  126 (207)
T ss_dssp             EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHC----CE-----EEEEEEEEECCCHHHH------------
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH----Hh-----cCCcEEEEEcChhhcc------------
Confidence            99999999763  3456788899999999999999999988    22     2357999999998765            


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                         +.++...|+++|++++.+++.++.++.+.|  |++++|+||++.|++....
T Consensus       127 ---~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~g--i~v~~v~pg~v~t~~~~~~  175 (207)
T 2yut_A          127 ---QVPGFAAYAAAKGALEAYLEAARKELLREG--VHLVLVRLPAVATGLWAPL  175 (207)
T ss_dssp             ---SSTTBHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEECCCCBCSGGGGGG
T ss_pred             ---CCCCcchHHHHHHHHHHHHHHHHHHHhhhC--CEEEEEecCcccCCCcccc
Confidence               445678999999999999999999999888  9999999999999985543

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.96  E-value=2e-29  Score=253.13  Aligned_cols=193  Identities=18%  Similarity=0.149  Sum_probs=161.2

Q ss_pred             cCCCCCCcEEEEecCCCc-hHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSG-IGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~g-iG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si~~~   98 (255)
                      ..++++||++|||||++| ||+++|++|+++|++|+++ +|+.+.+.+..+++.+..+  +.++.++.+|++|.++++.+
T Consensus       669 ~~m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~al  748 (1887)
T 2uv8_A          669 NGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEAL  748 (1887)
T ss_dssp             TCBCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHH
Confidence            445789999999999998 9999999999999999998 5777777777777754332  45789999999999999999


Q ss_pred             HHHHhcC-----CC-CeeEEEEccCCCC---CCCCCC--hHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhccCCCCCeE
Q 025275           99 ASEYNSQ-----GR-PLNILINNAGIMA---SPFMLS--KDNIELQFATNHLGHFLLTHLL--LDTMKKTAQKSSREGRI  165 (255)
Q Consensus        99 ~~~~~~~-----~g-~id~lv~~ag~~~---~~~~~~--~~~~~~~~~~n~~~~~~~~~~~--~~~~~~~~~~~~~~g~i  165 (255)
                      ++++.+.     +| ++|+||||||+..   ++.+.+  .++|.+++++|+.+++.+++.+  ++.|.+     ++.|+|
T Consensus       749 v~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~-----~~~G~I  823 (1887)
T 2uv8_A          749 IEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIET-----RPAQVI  823 (1887)
T ss_dssp             HHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCS-----CCEEEE
T ss_pred             HHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----CCCCEE
Confidence            9999988     66 9999999999863   345667  8999999999999999999987  566654     345899


Q ss_pred             EEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHH-HHHHHHHHhhCCCcEEEEEeeCCcee-cCcccc
Q 025275          166 VNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH-AKELAKHLKEDGVNITANSLHPGSIV-TNLFRY  240 (255)
Q Consensus       166 i~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l-~~~la~~~~~~~~~i~vn~v~PG~v~-t~~~~~  240 (255)
                      |++||..+..               +  +...|++||+|+.+| ++.++.++.+.   |+||+|+||+++ |+|+..
T Consensus       824 VnISS~ag~~---------------g--g~~aYaASKAAL~~Lttr~lA~ela~~---IrVNaV~PG~V~tT~m~~~  880 (1887)
T 2uv8_A          824 LPMSPNHGTF---------------G--GDGMYSESKLSLETLFNRWHSESWANQ---LTVCGAIIGWTRGTGLMSA  880 (1887)
T ss_dssp             EEECSCTTCS---------------S--CBTTHHHHHHHGGGHHHHHHHSSCTTT---EEEEEEEECCEECC-----
T ss_pred             EEEcChHhcc---------------C--CCchHHHHHHHHHHHHHHHHHHHhCCC---eEEEEEEeccccccccccc
Confidence            9999998765               2  457899999999999 89999988765   999999999999 788654

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.96  E-value=8.3e-30  Score=206.02  Aligned_cols=160  Identities=17%  Similarity=0.243  Sum_probs=141.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++|||||+|+||++++++|+ +|++|++++|+.+                   .+.+|++|+++++++++++    +++|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~----~~~d   60 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-------------------DVTVDITNIDSIKKMYEQV----GKVD   60 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-------------------SEECCTTCHHHHHHHHHHH----CCEE
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-------------------ceeeecCCHHHHHHHHHHh----CCCC
Confidence            79999999999999999999 9999999999864                   4789999999999999876    6899


Q ss_pred             EEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          111 ILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       111 ~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      +||||||...  +..+.+.+++.+.+++|+.+++++++++.+.+++       +++||++||..+..             
T Consensus        61 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-------~~~iv~~sS~~~~~-------------  120 (202)
T 3d7l_A           61 AIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLND-------KGSFTLTTGIMMED-------------  120 (202)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEE-------EEEEEEECCGGGTS-------------
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhcc-------CCEEEEEcchhhcC-------------
Confidence            9999999763  3456788999999999999999999999988753       37999999987654             


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                        +.++...|+++|++++.+++.++.++ +.|  |++++|+||++.|++..
T Consensus       121 --~~~~~~~Y~~sK~~~~~~~~~~~~e~-~~g--i~v~~v~pg~v~~~~~~  166 (202)
T 3d7l_A          121 --PIVQGASAAMANGAVTAFAKSAAIEM-PRG--IRINTVSPNVLEESWDK  166 (202)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHTTSC-STT--CEEEEEEECCBGGGHHH
T ss_pred             --CCCccHHHHHHHHHHHHHHHHHHHHc-cCC--eEEEEEecCccCCchhh
Confidence              44567899999999999999999998 666  99999999999999754

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.2e-30  Score=249.49  Aligned_cols=193  Identities=18%  Similarity=0.135  Sum_probs=163.2

Q ss_pred             cCCCCCCcEEEEecCCCc-hHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSG-IGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~g-iG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si~~~   98 (255)
                      ..+++++|++|||||++| ||+++|++|+++|++|+++ +|+.+.+.+..+++.+..+  +.++.++++|++|+++++++
T Consensus       470 ~~msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaL  549 (1688)
T 2pff_A          470 XXVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEAL  549 (1688)
T ss_dssp             SCCCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHH
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHH
Confidence            446788999999999998 9999999999999999998 5777777777666644332  45789999999999999999


Q ss_pred             HHHHhcC-----CC-CeeEEEEccCCCC---CCCCCC--hHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhccCCCCCeE
Q 025275           99 ASEYNSQ-----GR-PLNILINNAGIMA---SPFMLS--KDNIELQFATNHLGHFLLTHLL--LDTMKKTAQKSSREGRI  165 (255)
Q Consensus        99 ~~~~~~~-----~g-~id~lv~~ag~~~---~~~~~~--~~~~~~~~~~n~~~~~~~~~~~--~~~~~~~~~~~~~~g~i  165 (255)
                      ++++.+.     +| ++|+||||||+..   ++.+.+  .++|.+++++|+.+++.+++.+  ++.|.+     ++.|+|
T Consensus       550 Ve~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~k-----rggGrI  624 (1688)
T 2pff_A          550 IEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIET-----RPAQVI  624 (1688)
T ss_dssp             HHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTT-----SCEEEC
T ss_pred             HHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHh-----CCCCEE
Confidence            9999988     77 9999999999763   345666  8999999999999999999998  667654     345899


Q ss_pred             EEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHH-HHHHHHHHhhCCCcEEEEEeeCCcee-cCcccc
Q 025275          166 VNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH-AKELAKHLKEDGVNITANSLHPGSIV-TNLFRY  240 (255)
Q Consensus       166 i~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l-~~~la~~~~~~~~~i~vn~v~PG~v~-t~~~~~  240 (255)
                      |++||.++..               +  +...|++||+|+.+| ++.++.++++.   |+||+|+||+++ |++...
T Consensus       625 VnISSiAG~~---------------G--g~saYaASKAAL~aLttrsLAeEla~~---IRVNaVaPG~V~TT~M~~~  681 (1688)
T 2pff_A          625 LPMSPNHGTF---------------G--GDGMYSESKLSLETLFNRWHSESWANQ---LTVCGAIIGWTRGTGLMSA  681 (1688)
T ss_dssp             CCCCSCTTTS---------------S--CBTTHHHHHHHHTHHHHHTTTSSCTTT---EECCCCCCCCCCCCSSSCT
T ss_pred             EEEEChHhcc---------------C--CchHHHHHHHHHHHHHHHHHHHHcCCC---eEEEEEEECcCcCCcccCC
Confidence            9999988765               2  457899999999999 78888887764   999999999999 787653

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.96  E-value=1.4e-28  Score=246.58  Aligned_cols=193  Identities=19%  Similarity=0.147  Sum_probs=161.2

Q ss_pred             cCCCCCCcEEEEecCCCc-hHHHHHHHHHHcCCeEEEEE-eccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSG-IGTETARVLALRGVHVIMAV-RNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~g-iG~~ia~~L~~~G~~Vi~~~-r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si~~~   98 (255)
                      ..++++||++|||||++| ||+++|++|+++|++|++++ |+.+.+.+..+++.+...  +.++.++.||++|.++++.+
T Consensus       646 ~~m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~al  725 (1878)
T 2uv9_A          646 SGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEAL  725 (1878)
T ss_dssp             HCBCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHH
T ss_pred             cCCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHH
Confidence            446789999999999999 99999999999999999995 666666666666644322  45799999999999999999


Q ss_pred             HHHHhcC---CC-CeeEEEEccCCCC---CCCCCC--hHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhccCCCCCeEEE
Q 025275           99 ASEYNSQ---GR-PLNILINNAGIMA---SPFMLS--KDNIELQFATNHLGHFLLTHL--LLDTMKKTAQKSSREGRIVN  167 (255)
Q Consensus        99 ~~~~~~~---~g-~id~lv~~ag~~~---~~~~~~--~~~~~~~~~~n~~~~~~~~~~--~~~~~~~~~~~~~~~g~ii~  167 (255)
                      ++++.+.   +| ++|+||||||+..   ++.+.+  .++|.+++++|+.+++.+++.  +++.|.+     ++.|+||+
T Consensus       726 v~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~-----~~~G~IVn  800 (1878)
T 2uv9_A          726 VNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYET-----RPAQVILP  800 (1878)
T ss_dssp             HHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCS-----CCEEECCE
T ss_pred             HHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-----CCCCEEEE
Confidence            9999998   89 9999999999863   446677  799999999999999999987  5666654     34589999


Q ss_pred             ecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHH-HhhCCCcEEEEEeeCCcee-cCcccc
Q 025275          168 VSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKH-LKEDGVNITANSLHPGSIV-TNLFRY  240 (255)
Q Consensus       168 vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~-~~~~~~~i~vn~v~PG~v~-t~~~~~  240 (255)
                      +||..+..               +  +...|+++|+++.+|++.++.+ +.+.   |+||+|+||+++ |+|...
T Consensus       801 ISS~ag~~---------------g--g~~aYaASKAAL~aLt~~laAeEla~~---IrVNaVaPG~V~gT~m~~~  855 (1878)
T 2uv9_A          801 LSPNHGTF---------------G--NDGLYSESKLALETLFNRWYSESWGNY---LTICGAVIGWTRGTGLMSA  855 (1878)
T ss_dssp             ECSCSSSS---------------S--CCSSHHHHHHHHTTHHHHHHHSTTTTT---EEEEEEEECCBCCTTSCSH
T ss_pred             Ecchhhcc---------------C--CchHHHHHHHHHHHHHHHHHHHHcCCC---eEEEEEEecceecCccccc
Confidence            99998765               2  3568999999999999876654 6543   999999999999 998653

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.95  E-value=5.7e-28  Score=219.69  Aligned_cols=178  Identities=21%  Similarity=0.246  Sum_probs=151.7

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc---chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM---AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++|||||+||||++++++|+++|+ +|++++|+.   +..++..+++.+.  +.++.++.||++|.+++..+++++.+
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~~i~~  316 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQL--GVRVTIAACDAADREALAALLAELPE  316 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTCCT
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999 799999963   3466777777765  67899999999999999999999887


Q ss_pred             CCCCeeEEEEccCCC-C--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIM-A--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~-~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      . +++|+||||||+. .  +..+.+.+++.+++++|+.|++++.+.+.+.         ..++||++||.++..      
T Consensus       317 ~-g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~---------~~~~iV~~SS~a~~~------  380 (496)
T 3mje_A          317 D-APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADL---------DLDAFVLFSSGAAVW------  380 (496)
T ss_dssp             T-SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS---------CCSEEEEEEEHHHHT------
T ss_pred             h-CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc---------CCCEEEEEeChHhcC------
Confidence            7 7899999999986 3  4567899999999999999999999876543         356999999999887      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                               +.+++..|+++|+++.+|++    ++..+|  |++++|+||++.++.+.
T Consensus       381 ---------g~~g~~~YaAaKa~ldala~----~~~~~G--i~v~sV~pG~w~~~gm~  423 (496)
T 3mje_A          381 ---------GSGGQPGYAAANAYLDALAE----HRRSLG--LTASSVAWGTWGEVGMA  423 (496)
T ss_dssp             ---------TCTTCHHHHHHHHHHHHHHH----HHHHTT--CCCEEEEECEESSSCC-
T ss_pred             ---------CCCCcHHHHHHHHHHHHHHH----HHHhcC--CeEEEEECCcccCCccc
Confidence                     55578899999999887766    455667  99999999999776543

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.95  E-value=2.7e-28  Score=203.38  Aligned_cols=182  Identities=23%  Similarity=0.225  Sum_probs=144.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |++|||||+||||++++++|+++|++|++++|+.+.++.               .+.+|++|.++++.+++++   .+++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------------~~~~D~~~~~~~~~~~~~~---~~~~   63 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA---------------DLSTPGGRETAVAAVLDRC---GGVL   63 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------CTTSHHHHHHHHHHHHHHH---TTCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc---------------cccCCcccHHHHHHHHHHc---CCCc
Confidence            689999999999999999999999999999998765311               1668999999999998865   3689


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC----
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK----  185 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~----  185 (255)
                      |+||||||....     .+.+.+.+++|+.+++++++++++.+.+     .+.++||++||..++.......+...    
T Consensus        64 d~vi~~Ag~~~~-----~~~~~~~~~~N~~~~~~l~~~~~~~~~~-----~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~  133 (255)
T 2dkn_A           64 DGLVCCAGVGVT-----AANSGLVVAVNYFGVSALLDGLAEALSR-----GQQPAAVIVGSIAATQPGAAELPMVEAMLA  133 (255)
T ss_dssp             SEEEECCCCCTT-----SSCHHHHHHHHTHHHHHHHHHHHHHHHT-----SSSCEEEEECCGGGGSTTGGGCHHHHHHHH
T ss_pred             cEEEECCCCCCc-----chhHHHHHHHHhHHHHHHHHHHHHHhhh-----cCCceEEEEeccccccccccccchhhhhcc
Confidence            999999997542     2347889999999999999999999986     44689999999987653211000000    


Q ss_pred             CCcc-------cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          186 INDE-------SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       186 ~~~~-------~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                      .++.       ...++...|+.+|++++.+++.++.++...|  |++++|+||.+.|++....
T Consensus       134 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~g--i~v~~v~pg~v~~~~~~~~  194 (255)
T 2dkn_A          134 GDEARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRG--VRLNVVAPGAVETPLLQAS  194 (255)
T ss_dssp             TCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTT--CEEEEEEECCBCSHHHHHH
T ss_pred             cchhhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcC--cEEEEEcCCcccchhhhhc
Confidence            0000       0013567899999999999999999998888  9999999999999986543

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.95  E-value=7.3e-28  Score=230.50  Aligned_cols=176  Identities=21%  Similarity=0.306  Sum_probs=156.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHH-HcCC-eEEEEEec---cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLA-LRGV-HVIMAVRN---MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~-~~G~-~Vi~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .++++|||||++|||+++|++|+ ++|+ +|++++|+   .+..++..+++.+.  +.++.++.||++|+++++++++++
T Consensus       529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--G~~v~~~~~Dvsd~~~v~~~~~~~  606 (795)
T 3slk_A          529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAY--GAEVSLQACDVADRETLAKVLASI  606 (795)
T ss_dssp             TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHH
Confidence            58999999999999999999999 7999 59999998   55677888888776  778999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+.+ ++|+||||||+..  ++.+++.++|++.+++|+.|++++++++.+.|           +||++||.++..     
T Consensus       607 ~~~~-~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l-----------~iV~~SS~ag~~-----  669 (795)
T 3slk_A          607 PDEH-PLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPDV-----------ALVLFSSVSGVL-----  669 (795)
T ss_dssp             CTTS-CEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS-----------EEEEEEETHHHH-----
T ss_pred             HHhC-CCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC-----------EEEEEccHHhcC-----
Confidence            8877 8999999999874  45678999999999999999999999885433           899999999987     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                                +.+++..|+++|    +|+++|+.++..+|  |++|+|+||++.|+++
T Consensus       670 ----------g~~g~~~YaAak----a~~~alA~~~~~~G--i~v~sI~pG~v~t~g~  711 (795)
T 3slk_A          670 ----------GSGGQGNYAAAN----SFLDALAQQRQSRG--LPTRSLAWGPWAEHGM  711 (795)
T ss_dssp             ----------TCSSCHHHHHHH----HHHHHHHHHHHHTT--CCEEEEEECCCSCCCH
T ss_pred             ----------CCCCCHHHHHHH----HHHHHHHHHHHHcC--CeEEEEECCeECcchh
Confidence                      566889999999    47888888998888  9999999999999854

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.94  E-value=3.7e-26  Score=238.88  Aligned_cols=193  Identities=19%  Similarity=0.138  Sum_probs=149.4

Q ss_pred             CCCCCcEEEEecCCCc-hHHHHHHHHHHcCCeEEEEEeccch-----HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSG-IGTETARVLALRGVHVIMAVRNMAA-----GKDVREAIVKEIPSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        25 ~~~~~k~vlItG~s~g-iG~~ia~~L~~~G~~Vi~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      ..++||++|||||++| ||++||++|++.|++|++++|+.+.     ++++.+++...  +.++..+++|++|+++++++
T Consensus      2132 ~~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~--G~~~~~v~~Dvtd~~~v~~l 2209 (3089)
T 3zen_D         2132 XXXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARF--DATLWVVPANMASYSDIDKL 2209 (3089)
T ss_dssp             CCCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCT--TCEEEEEECCTTCHHHHHHH
T ss_pred             ccCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhc--CCeEEEEEecCCCHHHHHHH
Confidence            3489999999999999 9999999999999999999999876     45555555333  56789999999999999999


Q ss_pred             HHHHhc----CCCCeeEEEEccCCC-------CCCCCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 025275           99 ASEYNS----QGRPLNILINNAGIM-------ASPFMLSKDNI----ELQFATNHLGHFLLTHLLLDTMKKTAQKSSREG  163 (255)
Q Consensus        99 ~~~~~~----~~g~id~lv~~ag~~-------~~~~~~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g  163 (255)
                      ++++.+    ++|++|+||||||+.       ....+.+.++|    +..+++|+.+++.+++.+.+.|...... ...+
T Consensus      2210 v~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g-~~~~ 2288 (3089)
T 3zen_D         2210 VEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIA-SRLH 2288 (3089)
T ss_dssp             HHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCC-CCEE
T ss_pred             HHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ceeE
Confidence            999998    889999999999972       12222333444    4449999999999999999999863110 0112


Q ss_pred             eEEEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHH--HhhCCCcEEEEEeeCCcee-cCcccc
Q 025275          164 RIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKH--LKEDGVNITANSLHPGSIV-TNLFRY  240 (255)
Q Consensus       164 ~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~--~~~~~~~i~vn~v~PG~v~-t~~~~~  240 (255)
                      .++..|+..+.                 ..+...|++||+|+.+|+|+++.|  +++ +  |+||+|+||+|+ |+++..
T Consensus      2289 ii~~~ss~~g~-----------------~g~~~aYsASKaAl~~LtrslA~E~~~a~-~--IrVn~v~PG~v~tT~l~~~ 2348 (3089)
T 3zen_D         2289 VVLPGSPNRGM-----------------FGGDGAYGEAKSALDALENRWSAEKSWAE-R--VSLAHALIGWTKGTGLMGQ 2348 (3089)
T ss_dssp             EEEEECSSTTS-----------------CSSCSSHHHHGGGHHHHHHHHHHCSTTTT-T--EEEEEEECCCEECSTTTTT
T ss_pred             EEEECCccccc-----------------CCCchHHHHHHHHHHHHHHHHHhccccCC-C--eEEEEEeecccCCCccccc
Confidence            23333332221                 224468999999999999999999  664 4  999999999999 776543

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.94  E-value=5.3e-26  Score=191.70  Aligned_cols=169  Identities=18%  Similarity=0.159  Sum_probs=137.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++|++|||||+|+||++++++|+++|++|++++|+.....           ..++.++.+|++|.+++..+++       
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~-------   63 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-----------GPNEECVQCDLADANAVNAMVA-------   63 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC-----------CTTEEEEECCTTCHHHHHHHHT-------
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc-----------CCCCEEEEcCCCCHHHHHHHHc-------
Confidence            4689999999999999999999999999999999976532           3478999999999999998887       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+||||||..      ..+.|.+.+++|+.|++++++++.+         .+.++||++||..++...+..   ..+.
T Consensus        64 ~~D~vi~~Ag~~------~~~~~~~~~~~N~~g~~~l~~a~~~---------~~~~~iv~~SS~~~~g~~~~~---~~~~  125 (267)
T 3rft_A           64 GCDGIVHLGGIS------VEKPFEQILQGNIIGLYNLYEAARA---------HGQPRIVFASSNHTIGYYPQT---ERLG  125 (267)
T ss_dssp             TCSEEEECCSCC------SCCCHHHHHHHHTHHHHHHHHHHHH---------TTCCEEEEEEEGGGGTTSBTT---SCBC
T ss_pred             CCCEEEECCCCc------CcCCHHHHHHHHHHHHHHHHHHHHH---------cCCCEEEEEcchHHhCCCCCC---CCCC
Confidence            589999999972      3456788999999999999999842         235799999998877533322   2345


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      +..+..+...|+.||++++.+++.++.++.     ++++.|+||.+.++.
T Consensus       126 e~~~~~~~~~Y~~sK~~~e~~~~~~a~~~g-----~~~~~vr~~~v~~~~  170 (267)
T 3rft_A          126 PDVPARPDGLYGVSKCFGENLARMYFDKFG-----QETALVRIGSCTPEP  170 (267)
T ss_dssp             TTSCCCCCSHHHHHHHHHHHHHHHHHHHHC-----CCEEEEEECBCSSSC
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHHHhC-----CeEEEEEeecccCCC
Confidence            556777788999999999999999988764     666667777776654

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.93  E-value=9.6e-26  Score=205.24  Aligned_cols=176  Identities=23%  Similarity=0.274  Sum_probs=147.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCe-EEEEEeccc---hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVH-VIMAVRNMA---AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~-Vi~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .++++|||||+||||++++++|+++|++ |++++|+.+   .+++..+++...  +.++.++.||++|.+++..+++++ 
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dv~d~~~v~~~~~~i-  301 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELLGGI-  301 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTS-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHHHH-
Confidence            5789999999999999999999999995 999999875   456666777665  668999999999999999999998 


Q ss_pred             cCCCCeeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      ..++++|+||||||+...  ..+.+.+++.+++++|+.|++++++++.+         ...++||++||.++..      
T Consensus       302 ~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~---------~~~~~~V~~SS~a~~~------  366 (486)
T 2fr1_A          302 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRE---------LDLTAFVLFSSFASAF------  366 (486)
T ss_dssp             CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT---------SCCSEEEEEEEHHHHT------
T ss_pred             HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCc---------CCCCEEEEEcChHhcC------
Confidence            567899999999998743  45678999999999999999999987643         2357999999998876      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                               +.+++..|+++|+++++|++    ++..+|  +++++|+||.+.++
T Consensus       367 ---------g~~g~~~Yaaaka~l~~la~----~~~~~g--i~v~~i~pG~~~~~  406 (486)
T 2fr1_A          367 ---------GAPGLGGYAPGNAYLDGLAQ----QRRSDG--LPATAVAWGTWAGS  406 (486)
T ss_dssp             ---------CCTTCTTTHHHHHHHHHHHH----HHHHTT--CCCEEEEECCBC--
T ss_pred             ---------CCCCCHHHHHHHHHHHHHHH----HHHhcC--CeEEEEECCeeCCC
Confidence                     44567899999998887655    455567  99999999999886

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.93  E-value=6e-25  Score=200.92  Aligned_cols=177  Identities=23%  Similarity=0.246  Sum_probs=147.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccc---hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMA---AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .++++|||||+||||++++++|+++|+ +|++++|+..   .+++..+++...  +.++.++.||++|.+++..++++  
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~~--  333 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGH--GCEVVHAACDVAERDALAALVTA--  333 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTT--TCEEEEEECCSSCHHHHHHHHHH--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHhc--
Confidence            478999999999999999999999999 5999999864   456666777654  66899999999999999999987  


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                         +++|+||||||+..  ...+.+.+++.+++++|+.|++++.+++.+.        ...++||++||..+..      
T Consensus       334 ---~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~--------~~~~~~V~~SS~a~~~------  396 (511)
T 2z5l_A          334 ---YPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADI--------KGLDAFVLFSSVTGTW------  396 (511)
T ss_dssp             ---SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSC--------TTCCCEEEEEEGGGTT------
T ss_pred             ---CCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhc--------cCCCEEEEEeCHHhcC------
Confidence               57999999999874  3456789999999999999999998876422        1357999999998876      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCce-ecCcccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSI-VTNLFRY  240 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v-~t~~~~~  240 (255)
                               +.+++..|+++|++++.|++.+    ..+|  +++++|+||++ +|+|...
T Consensus       397 ---------g~~g~~~YaaaKa~ld~la~~~----~~~g--i~v~sv~pG~~~~tgm~~~  441 (511)
T 2z5l_A          397 ---------GNAGQGAYAAANAALDALAERR----RAAG--LPATSVAWGLWGGGGMAAG  441 (511)
T ss_dssp             ---------CCTTBHHHHHHHHHHHHHHHHH----HTTT--CCCEEEEECCBCSTTCCCC
T ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHH----HHcC--CcEEEEECCcccCCccccc
Confidence                     4457789999999998887754    4566  99999999999 7877643

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.91  E-value=3.6e-24  Score=177.00  Aligned_cols=163  Identities=15%  Similarity=0.162  Sum_probs=124.7

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCce-EEEEeCCCCHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV-DAMELDVSSLASVRKFASE  101 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~si~~~~~~  101 (255)
                      +...+++|++|||||+|+||++++++|+++|++|++++|+.+++.+..+        ..+ .++.+|++         ++
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~---------~~   77 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLE---------ED   77 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTT---------SC
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccH---------HH
Confidence            4456789999999999999999999999999999999999887654332        157 89999999         33


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.+.++++|+||||||...      .+++.+.+++|+.+++++++++.+.         +.++||++||..+....    
T Consensus        78 ~~~~~~~~D~vi~~ag~~~------~~~~~~~~~~n~~~~~~l~~a~~~~---------~~~~iv~~SS~~~~~~~----  138 (236)
T 3e8x_A           78 FSHAFASIDAVVFAAGSGP------HTGADKTILIDLWGAIKTIQEAEKR---------GIKRFIMVSSVGTVDPD----  138 (236)
T ss_dssp             CGGGGTTCSEEEECCCCCT------TSCHHHHHHTTTHHHHHHHHHHHHH---------TCCEEEEECCTTCSCGG----
T ss_pred             HHHHHcCCCEEEECCCCCC------CCCccccchhhHHHHHHHHHHHHHc---------CCCEEEEEecCCCCCCC----
Confidence            4444568999999999643      2467889999999999999988432         24699999996644310    


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                             . ...+...|+.+|++++.+++       ..+  |+++.|+||.+.++..
T Consensus       139 -------~-~~~~~~~Y~~sK~~~e~~~~-------~~g--i~~~~lrpg~v~~~~~  178 (236)
T 3e8x_A          139 -------Q-GPMNMRHYLVAKRLADDELK-------RSS--LDYTIVRPGPLSNEES  178 (236)
T ss_dssp             -------G-SCGGGHHHHHHHHHHHHHHH-------HSS--SEEEEEEECSEECSCC
T ss_pred             -------C-ChhhhhhHHHHHHHHHHHHH-------HCC--CCEEEEeCCcccCCCC
Confidence                   0 11456789999999888765       456  9999999999999864

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.91  E-value=1.1e-23  Score=182.60  Aligned_cols=190  Identities=15%  Similarity=0.122  Sum_probs=143.4

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEE-EeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM-ELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++++|||||+|+||++++++|+++|++|++++|+.+......+.+.... +.++.++ .+|++|.++++.+++    
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~----   82 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIK----   82 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTT----
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHc----
Confidence            3678999999999999999999999999999999998876665555554332 2468888 899999887766654    


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                         ++|+|||||+.....     +++.+.+++|+.++.++++++.+.        .+.++||++||..++.......+..
T Consensus        83 ---~~d~vih~A~~~~~~-----~~~~~~~~~n~~g~~~ll~~~~~~--------~~~~~iv~~SS~~~~~~~~~~~~~~  146 (342)
T 1y1p_A           83 ---GAAGVAHIASVVSFS-----NKYDEVVTPAIGGTLNALRAAAAT--------PSVKRFVLTSSTVSALIPKPNVEGI  146 (342)
T ss_dssp             ---TCSEEEECCCCCSCC-----SCHHHHHHHHHHHHHHHHHHHHTC--------TTCCEEEEECCGGGTCCCCTTCCCC
T ss_pred             ---CCCEEEEeCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHhC--------CCCcEEEEeccHHHhcCCCCCCCCc
Confidence               689999999975432     246678999999999999988742        1246999999987664211100001


Q ss_pred             CCCccc----------------CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          185 KINDES----------------AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       185 ~~~~~~----------------~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      +++++.                +..+...|+.+|++.+.+++.++.++.. +  ++++.++||.+.++...
T Consensus       147 ~~~E~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~-~--~~~~~~rp~~v~g~~~~  214 (342)
T 1y1p_A          147 YLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKP-H--FTLNAVLPNYTIGTIFD  214 (342)
T ss_dssp             EECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCC-S--SEEEEEEESEEECCCSC
T ss_pred             ccCccccCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCC-C--ceEEEEcCCceECCCCC
Confidence            122221                1234568999999999999999988865 5  99999999999998754

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.91  E-value=4.1e-24  Score=186.59  Aligned_cols=169  Identities=15%  Similarity=0.167  Sum_probs=139.3

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHc-CC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALR-GV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~-G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++|++|||||+|+||++++++|+++ |+ +|++++|+..+.....+.+.    ..++.++.+|++|.+++..+++    
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~~----   90 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRDLERLNYALE----   90 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTCHHHHHHHTT----
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCCHHHHHHHHh----
Confidence            57899999999999999999999999 97 99999999877665555442    3478999999999998888775    


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                         ++|+|||+||.....  .....+.+.+++|+.|+.++++++.+..         .++||++||..+..         
T Consensus        91 ---~~D~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~gt~~l~~aa~~~~---------v~~~V~~SS~~~~~---------  147 (344)
T 2gn4_A           91 ---GVDICIHAAALKHVP--IAEYNPLECIKTNIMGASNVINACLKNA---------ISQVIALSTDKAAN---------  147 (344)
T ss_dssp             ---TCSEEEECCCCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHHHTT---------CSEEEEECCGGGSS---------
T ss_pred             ---cCCEEEECCCCCCCC--chhcCHHHHHHHHHHHHHHHHHHHHhCC---------CCEEEEecCCccCC---------
Confidence               589999999975321  1234456889999999999999998642         35999999966432         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                               +...|+.+|++++.+++.++.++...+  +++++|+||.+.++.
T Consensus       148 ---------p~~~Y~~sK~~~E~~~~~~~~~~~~~g--~~~~~vRpg~v~g~~  189 (344)
T 2gn4_A          148 ---------PINLYGATKLCSDKLFVSANNFKGSSQ--TQFSVVRYGNVVGSR  189 (344)
T ss_dssp             ---------CCSHHHHHHHHHHHHHHHGGGCCCSSC--CEEEEECCCEETTCT
T ss_pred             ---------CccHHHHHHHHHHHHHHHHHHHhCCCC--cEEEEEEeccEECCC
Confidence                     457899999999999999988777677  999999999999864

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.91  E-value=1.3e-23  Score=182.26  Aligned_cols=187  Identities=14%  Similarity=0.100  Sum_probs=142.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++|++|||||+|+||++++++|+++|++|++++|+.+....  +.+.......++.++.+|++|.+++.++++.+     
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-----   74 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKELGIENDVKIIHMDLLEFSNIIRTIEKV-----   74 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHTTCTTTEEECCCCTTCHHHHHHHHHHH-----
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhccccCceeEEECCCCCHHHHHHHHHhc-----
Confidence            57899999999999999999999999999999998765422  22222212346889999999999999999876     


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+||||||....  +.+.+++.+.+++|+.+++++++++.+.        +..++||++||...+. ....   .+++
T Consensus        75 ~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~~~~--------~~~~~iv~~SS~~vyg-~~~~---~~~~  140 (345)
T 2z1m_A           75 QPDEVYNLAAQSFV--GVSFEQPILTAEVDAIGVLRILEALRTV--------KPDTKFYQASTSEMFG-KVQE---IPQT  140 (345)
T ss_dssp             CCSEEEECCCCCCH--HHHTTSHHHHHHHHTHHHHHHHHHHHHH--------CTTCEEEEEEEGGGGC-SCSS---SSBC
T ss_pred             CCCEEEECCCCcch--hhhhhCHHHHHHHHHHHHHHHHHHHHHh--------CCCceEEEEechhhcC-CCCC---CCCC
Confidence            68999999996421  1234567889999999999999999742        1136999999986543 2211   2344


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHh---hCCCcEEEEEeeCCceecCc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLK---EDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~---~~~~~i~vn~v~PG~v~t~~  237 (255)
                      +..+..+...|+.+|++.+.+++.++.++.   ..+  +.++.+.||...|.+
T Consensus       141 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~--r~~~~~gpg~~~~~~  191 (345)
T 2z1m_A          141 EKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSG--ILFNHESPLRGIEFV  191 (345)
T ss_dssp             TTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEE--EECCEECTTSCTTSH
T ss_pred             ccCCCCCCChhHHHHHHHHHHHHHHHHHhCCceEee--eeeeecCCCCCCcch
Confidence            555666778999999999999999998875   223  567778899887765

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.91  E-value=1.9e-23  Score=182.68  Aligned_cols=188  Identities=15%  Similarity=0.106  Sum_probs=147.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++++++|||||+|+||++++++|+++|++|++++|+.+......+.+. .  ..++.++.+|++|.+++..+++.+    
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~Dl~d~~~~~~~~~~~----   79 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR-V--ADGMQSEIGDIRDQNKLLESIREF----   79 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT-T--TTTSEEEECCTTCHHHHHHHHHHH----
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc-c--CCceEEEEccccCHHHHHHHHHhc----
Confidence            457899999999999999999999999999999998766544443332 1  347889999999999999999876    


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                       ++|+||||||...  ...+.+++.+.+++|+.++.++++++.+.        +..++||++||...+......   .++
T Consensus        80 -~~d~vih~A~~~~--~~~~~~~~~~~~~~n~~~~~~l~~a~~~~--------~~~~~~v~~SS~~vyg~~~~~---~~~  145 (357)
T 1rkx_A           80 -QPEIVFHMAAQPL--VRLSYSEPVETYSTNVMGTVYLLEAIRHV--------GGVKAVVNITSDKCYDNKEWI---WGY  145 (357)
T ss_dssp             -CCSEEEECCSCCC--HHHHHHCHHHHHHHHTHHHHHHHHHHHHH--------CCCCEEEEECCGGGBCCCCSS---SCB
T ss_pred             -CCCEEEECCCCcc--cccchhCHHHHHHHHHHHHHHHHHHHHHh--------CCCCeEEEecCHHHhCCCCcC---CCC
Confidence             6999999999521  22345667889999999999999998753        124699999998754321111   123


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHh------hCCCcEEEEEeeCCceecCc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLK------EDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~------~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .+..+..+...|+.+|.+.+.+++.++.++.      +.+  ++++.|+||.+.++.
T Consensus       146 ~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~g--i~~~~lrp~~v~G~~  200 (357)
T 1rkx_A          146 RENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHG--TAVATVRAGNVIGGG  200 (357)
T ss_dssp             CTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHC--CEEEEEECCCEECTT
T ss_pred             CCCCCCCCCCccHHHHHHHHHHHHHHHHHHhhhhccccCC--ceEEEEeeceeeCCC
Confidence            3444555678899999999999999998874      346  999999999999874

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.91  E-value=2.5e-23  Score=180.55  Aligned_cols=185  Identities=22%  Similarity=0.152  Sum_probs=145.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +++++|||||+|+||++++++|+++|++|++++|+.+...+..+.+.... +.++.++.+|++|.+++.+++++     +
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~-----~   77 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDA-----H   77 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHH-----S
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhc-----c
Confidence            46799999999999999999999999999999998887776666665442 34789999999999999999986     3


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+||||||....  ....+...+.+++|+.+++++++++.    +     .+.++||++||...+. .+.   ..+++
T Consensus        78 ~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~----~-----~~~~~iv~~SS~~~~g-~~~---~~~~~  142 (341)
T 3enk_A           78 PITAAIHFAALKAV--GESVAKPIEYYRNNLDSLLSLLRVMR----E-----RAVKRIVFSSSATVYG-VPE---RSPID  142 (341)
T ss_dssp             CCCEEEECCCCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHH----H-----TTCCEEEEEEEGGGBC-SCS---SSSBC
T ss_pred             CCcEEEECcccccc--CccccChHHHHHHHHHHHHHHHHHHH----h-----CCCCEEEEEecceEec-CCC---CCCCC
Confidence            79999999997432  12234456789999999999887653    3     2346999999976542 222   22345


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      +..+..+...|+.+|++.+.+++.++.++.  +  ++++.++|+.+.++.
T Consensus       143 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~--~~~~~lRp~~v~G~~  188 (341)
T 3enk_A          143 ETFPLSATNPYGQTKLMAEQILRDVEAADP--S--WRVATLRYFNPVGAH  188 (341)
T ss_dssp             TTSCCBCSSHHHHHHHHHHHHHHHHHHHCT--T--CEEEEEEECEEECCC
T ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHhhcCC--C--ceEEEEeeccccCCc
Confidence            556666778999999999999999988765  3  788889999998873

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.90  E-value=1.3e-22  Score=176.27  Aligned_cols=185  Identities=17%  Similarity=0.159  Sum_probs=142.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      |++|||||+|+||++++++|++.|++|++++|+. .......+.+..   ..++.++.+|++|.+++..+++..     +
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~-----~   73 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITKY-----M   73 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHH-----C
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhcc---CCceEEEEcCCCCHHHHHHHHhcc-----C
Confidence            5799999999999999999999999999999864 333333444433   236889999999999999998863     6


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc------
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR------  182 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~------  182 (255)
                      +|+|||+||....  ..+.+++.+.+++|+.++.++++++.+...        .++||++||...+.. ....+      
T Consensus        74 ~d~vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--------~~~iv~~SS~~v~g~-~~~~~~~e~~~  142 (347)
T 1orr_A           74 PDSCFHLAGQVAM--TTSIDNPCMDFEINVGGTLNLLEAVRQYNS--------NCNIIYSSTNKVYGD-LEQYKYNETET  142 (347)
T ss_dssp             CSEEEECCCCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHHHHCT--------TCEEEEEEEGGGGTT-CTTSCEEECSS
T ss_pred             CCEEEECCcccCh--hhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--------CceEEEeccHHHhCC-CCcCCcccccc
Confidence            9999999996321  123456788999999999999999987653        259999999765432 11111      


Q ss_pred             -------CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          183 -------FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       183 -------~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                             ...+++..+..+...|+.+|++.+.+++.++.++   |  ++++.|+||.+.++..
T Consensus       143 ~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---g--i~~~ilrp~~v~g~~~  200 (347)
T 1orr_A          143 RYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF---G--LNTVVFRHSSMYGGRQ  200 (347)
T ss_dssp             CEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECCEECTTC
T ss_pred             cccccccccCccccCCCCCCCchHHHHHHHHHHHHHHHHHh---C--CcEEEEccCceeCcCC
Confidence                   0123444555677899999999999999998876   4  9999999999999864

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.89  E-value=1.8e-22  Score=173.76  Aligned_cols=179  Identities=20%  Similarity=0.186  Sum_probs=139.8

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .+.+++|||||+|+||++++++|+++|++|++++|+.+. ..    +       ++.++.+|++|.+++..+++.     
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~----l-------~~~~~~~Dl~d~~~~~~~~~~-----   72 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL----P-------NVEMISLDIMDSQRVKKVISD-----   72 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC----T-------TEEEEECCTTCHHHHHHHHHH-----
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc----c-------eeeEEECCCCCHHHHHHHHHh-----
Confidence            356899999999999999999999999999999998754 11    1       578899999999999999886     


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +++|+||||||....  ..+.+++.+.+++|+.++.++++++ +.+.       +.++||++||...+....  .+..++
T Consensus        73 ~~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~-~~~~-------~~~~iv~~SS~~v~g~~~--~~~~~~  140 (321)
T 2pk3_A           73 IKPDYIFHLAAKSSV--KDSWLNKKGTFSTNVFGTLHVLDAV-RDSN-------LDCRILTIGSSEEYGMIL--PEESPV  140 (321)
T ss_dssp             HCCSEEEECCSCCCH--HHHTTCHHHHHHHHHHHHHHHHHHH-HHHT-------CCCEEEEEEEGGGTBSCC--GGGCSB
T ss_pred             cCCCEEEEcCcccch--hhhhhcHHHHHHHHHHHHHHHHHHH-HHhC-------CCCeEEEEccHHhcCCCC--CCCCCC
Confidence            369999999996432  1233467889999999999999999 4442       246999999987553210  011234


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      +++.+..+...|+.+|++.+.+++.++.++   |  ++++.++||.+.++...
T Consensus       141 ~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---g--i~~~ilrp~~v~g~~~~  188 (321)
T 2pk3_A          141 SEENQLRPMSPYGVSKASVGMLARQYVKAY---G--MDIIHTRTFNHIGPGQS  188 (321)
T ss_dssp             CTTSCCBCCSHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECEEECTTCC
T ss_pred             CCCCCCCCCCccHHHHHHHHHHHHHHHHHc---C--CCEEEEEeCcccCcCCC
Confidence            555566677899999999999999998764   4  89999999999998643

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.89  E-value=4.9e-22  Score=175.94  Aligned_cols=188  Identities=16%  Similarity=0.139  Sum_probs=140.8

Q ss_pred             CcEEEEecCCCchHHHHHHHHH-HcCCeEEEEEeccch---------HHHHHHHHHhhCC---CCc---eEEEEeCCCCH
Q 025275           29 GLTAIVTGASSGIGTETARVLA-LRGVHVIMAVRNMAA---------GKDVREAIVKEIP---SAK---VDAMELDVSSL   92 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~-~~G~~Vi~~~r~~~~---------~~~~~~~~~~~~~---~~~---~~~~~~Dl~~~   92 (255)
                      ++++|||||+|+||++++++|+ ++|++|++++|+...         .....+.+.....   ..+   +.++.+|++|.
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   81 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence            4589999999999999999999 999999999997654         3333332333211   124   88999999999


Q ss_pred             HHHHHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           93 ASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        93 ~si~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      +++..++++    ++++|+||||||.....  .+.+++.+.+++|+.+++++++++...         +.++||++||..
T Consensus        82 ~~~~~~~~~----~~~~d~vih~A~~~~~~--~~~~~~~~~~~~Nv~g~~~ll~a~~~~---------~~~~iv~~SS~~  146 (397)
T 1gy8_A           82 DFLNGVFTR----HGPIDAVVHMCAFLAVG--ESVRDPLKYYDNNVVGILRLLQAMLLH---------KCDKIIFSSSAA  146 (397)
T ss_dssp             HHHHHHHHH----SCCCCEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHHHT---------TCCEEEEEEEGG
T ss_pred             HHHHHHHHh----cCCCCEEEECCCccCcC--cchhhHHHHHHHHhHHHHHHHHHHHHh---------CCCEEEEECCHH
Confidence            999888875    35699999999964321  134567889999999999999986431         246999999965


Q ss_pred             cccccccC----ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          173 HRFAYSEG----IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       173 ~~~~~~~~----~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .+ +....    .+..++++..+..+...|+.+|++.+.+++.++.++   +  ++++.++|+.+..+.
T Consensus       147 v~-g~~~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---g--i~~~ilRp~~v~G~~  209 (397)
T 1gy8_A          147 IF-GNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY---G--IKGICLRYFNACGAH  209 (397)
T ss_dssp             GT-BSCCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECEEECCC
T ss_pred             Hh-CCCCcccccccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHH---C--CcEEEEeccceeCCC
Confidence            43 22210    002345555566667899999999999999998877   4  899999999998764

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.89  E-value=2.4e-22  Score=175.62  Aligned_cols=192  Identities=13%  Similarity=0.135  Sum_probs=142.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccc--hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           31 TAIVTGASSGIGTETARVLALR-GVHVIMAVRNMA--AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++|||||+|+||++++++|++. |++|++++|+..  ..+.. +++   ....++.++.+|++|.+++..++++.     
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~-----   72 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL-SDI---SESNRYNFEHADICDSAEITRIFEQY-----   72 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG-TTT---TTCTTEEEEECCTTCHHHHHHHHHHH-----
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh-hhh---hcCCCeEEEECCCCCHHHHHHHHhhc-----
Confidence            5999999999999999999998 799999998752  22211 111   11347899999999999999998863     


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc------Cc
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE------GI  181 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~------~~  181 (255)
                      ++|+||||||...  .+.+.+++.+.+++|+.+++++++++.+.+.......+.+++||++||...+.....      ..
T Consensus        73 ~~d~vih~A~~~~--~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~  150 (361)
T 1kew_A           73 QPDAVMHLAAESH--VDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSV  150 (361)
T ss_dssp             CCSEEEECCSCCC--HHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTS
T ss_pred             CCCEEEECCCCcC--hhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccc
Confidence            6999999999643  122345677899999999999999999987530000001359999999764432110      01


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      ++.++++..+..+...|+.+|++++.+++.++.++   +  ++++.|+||.+.++..
T Consensus       151 ~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g--i~~~~vrp~~v~G~~~  202 (361)
T 1kew_A          151 TLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY---G--LPTIVTNCSNNYGPYH  202 (361)
T ss_dssp             CCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CCEEEEEECEEESTTC
T ss_pred             cCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHh---C--CcEEEEeeceeECCCC
Confidence            11245555566677899999999999999998876   4  8899999999999874

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.89  E-value=2.3e-22  Score=175.53  Aligned_cols=187  Identities=13%  Similarity=0.084  Sum_probs=143.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC---CCceEEEEeCCCCHHHHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP---SAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +++++++|||||+|+||++++++|+++|++|++++|+.....+..+.+.+...   ..++.++.+|++|.+++..+++  
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--  101 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--  101 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc--
Confidence            35678999999999999999999999999999999976532222333322211   2468899999999998888876  


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                           ++|+|||+||.....  .+.+++.+.+++|+.++.++++++.+.         +.++||++||...+....    
T Consensus       102 -----~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~---------~~~~~v~~SS~~~~~~~~----  161 (352)
T 1sb8_A          102 -----GVDYVLHQAALGSVP--RSINDPITSNATNIDGFLNMLIAARDA---------KVQSFTYAASSSTYGDHP----  161 (352)
T ss_dssp             -----TCSEEEECCSCCCHH--HHHHCHHHHHHHHTHHHHHHHHHHHHT---------TCSEEEEEEEGGGGTTCC----
T ss_pred             -----CCCEEEECCcccCch--hhhhCHHHHHHHHHHHHHHHHHHHHHc---------CCCEEEEeccHHhcCCCC----
Confidence                 689999999964321  234567889999999999999988642         246999999987654221    


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      ..++++..+..+...|+.+|++.+.+++.++.++   +  ++++.++||.+.++...
T Consensus       162 ~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g--~~~~ilRp~~v~G~~~~  213 (352)
T 1sb8_A          162 GLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY---G--FSTIGLRYFNVFGRRQD  213 (352)
T ss_dssp             CSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CCCEEEEECCEECTTCC
T ss_pred             CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc---C--CCEEEEEECceeCcCCC
Confidence            1234455555667899999999999999988776   4  88888999999998643

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.89  E-value=1.3e-21  Score=173.40  Aligned_cols=188  Identities=14%  Similarity=0.116  Sum_probs=138.5

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHH----------------HHHHHHHhhCCCCceEEEEeCCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGK----------------DVREAIVKEIPSAKVDAMELDVS   90 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~----------------~~~~~~~~~~~~~~~~~~~~Dl~   90 (255)
                      -+++++|||||+|+||++++++|+++|++|++++|......                +..+.+.... +.++.++.+|++
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~Dl~   87 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGDIC   87 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESCTT
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEECCCC
Confidence            45789999999999999999999999999999998643211                1122222111 346889999999


Q ss_pred             CHHHHHHHHHHHhcCCCCeeEEEEccCCCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEec
Q 025275           91 SLASVRKFASEYNSQGRPLNILINNAGIMASP-FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVS  169 (255)
Q Consensus        91 ~~~si~~~~~~~~~~~g~id~lv~~ag~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vs  169 (255)
                      |.+++..+++.+     ++|+||||||..... ...+++.+...+++|+.|+.++++++.+..        ...+||++|
T Consensus        88 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~--------~~~~~V~~S  154 (404)
T 1i24_A           88 DFEFLAESFKSF-----EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG--------EECHLVKLG  154 (404)
T ss_dssp             SHHHHHHHHHHH-----CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC--------TTCEEEEEC
T ss_pred             CHHHHHHHHhcc-----CCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhC--------CCcEEEEeC
Confidence            999999999876     599999999975321 123556677889999999999999986432        124999999


Q ss_pred             CCccccccccCccCCCCCcc--------------cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceec
Q 025275          170 SEAHRFAYSEGIRFDKINDE--------------SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVT  235 (255)
Q Consensus       170 S~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t  235 (255)
                      |...+. ... .   ++++.              .+..+...|+.+|++.+.+++.++.++   |  ++++.|+||.|.+
T Consensus       155 S~~vyg-~~~-~---~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g--i~~~ivrp~~v~G  224 (404)
T 1i24_A          155 TMGEYG-TPN-I---DIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---G--IRATDLNQGVVYG  224 (404)
T ss_dssp             CGGGGC-CCS-S---CBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECEEEC
T ss_pred             cHHHhC-CCC-C---CCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhc---C--CeEEEEecceeeC
Confidence            976443 221 1   11121              244566789999999999999888776   4  9999999999999


Q ss_pred             Ccc
Q 025275          236 NLF  238 (255)
Q Consensus       236 ~~~  238 (255)
                      |..
T Consensus       225 p~~  227 (404)
T 1i24_A          225 VKT  227 (404)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            853

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.89  E-value=2.4e-22  Score=173.97  Aligned_cols=181  Identities=14%  Similarity=0.117  Sum_probs=138.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccc--hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRG--VHVIMAVRNMA--AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      +++++|||||+|+||++++++|+++|  ++|++++|+..  ..+.. +++   ....++.++.+|++|.+++..++.   
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~-~~~---~~~~~~~~~~~Dl~d~~~~~~~~~---   74 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL-KDL---EDDPRYTFVKGDVADYELVKELVR---   74 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG-TTT---TTCTTEEEEECCTTCHHHHHHHHH---
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH-hhh---ccCCceEEEEcCCCCHHHHHHHhh---
Confidence            35679999999999999999999997  89999998742  21111 111   113478899999999999988883   


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                          ++|+||||||....  +.+.+++.+.+++|+.++.++++++.+.  .      ..++||++||...+... ..   
T Consensus        75 ----~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~~~~--~------~~~~iv~~SS~~vyg~~-~~---  136 (336)
T 2hun_A           75 ----KVDGVVHLAAESHV--DRSISSPEIFLHSNVIGTYTLLESIRRE--N------PEVRFVHVSTDEVYGDI-LK---  136 (336)
T ss_dssp             ----TCSEEEECCCCCCH--HHHHHCTHHHHHHHHHHHHHHHHHHHHH--C------TTSEEEEEEEGGGGCCC-SS---
T ss_pred             ----CCCEEEECCCCcCh--hhhhhCHHHHHHHHHHHHHHHHHHHHHh--C------CCcEEEEeccHHHHCCC-CC---
Confidence                69999999996431  1234566788999999999999999865  1      13699999997644321 11   


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .++++..+..+...|+.+|++.+.+++.++.++   +  ++++.++||.+.++..
T Consensus       137 ~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~--~~~~ilrp~~v~g~~~  186 (336)
T 2hun_A          137 GSFTENDRLMPSSPYSATKAASDMLVLGWTRTY---N--LNASITRCTNNYGPYQ  186 (336)
T ss_dssp             SCBCTTBCCCCCSHHHHHHHHHHHHHHHHHHHT---T--CEEEEEEECEEESTTC
T ss_pred             CCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh---C--CCEEEEeeeeeeCcCC
Confidence            234455566677899999999999999988765   4  8999999999999864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.89  E-value=6.9e-23  Score=178.54  Aligned_cols=190  Identities=15%  Similarity=0.071  Sum_probs=147.9

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCC---CceEEEEeCCCCHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPS---AKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~si~~~~   99 (255)
                      ..+.+++|++|||||+|+||++++++|+++|++|++++|+........+.+....+.   .++.++.+|++|.+++..++
T Consensus        19 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   98 (351)
T 3ruf_A           19 QQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM   98 (351)
T ss_dssp             HHHHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT
T ss_pred             hhCCCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh
Confidence            344567899999999999999999999999999999999877666666665543211   47899999999999888877


Q ss_pred             HHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          100 SEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +       ++|+|||+|+....  ..+.+++.+.+++|+.++.++++++.+..         .+++|++||...+... .
T Consensus        99 ~-------~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~ll~a~~~~~---------~~~~v~~SS~~vyg~~-~  159 (351)
T 3ruf_A           99 K-------GVDHVLHQAALGSV--PRSIVDPITTNATNITGFLNILHAAKNAQ---------VQSFTYAASSSTYGDH-P  159 (351)
T ss_dssp             T-------TCSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHTT---------CSEEEEEEEGGGGTTC-C
T ss_pred             c-------CCCEEEECCccCCc--chhhhCHHHHHHHHHHHHHHHHHHHHHcC---------CCEEEEEecHHhcCCC-C
Confidence            6       68999999996432  12345677889999999999999885432         3499999998655322 1


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                         ..++++..+..+...|+.+|.+.+.+++.++.+.   +  ++++.++|+.+.++...
T Consensus       160 ---~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g--~~~~ilRp~~v~G~~~~  211 (351)
T 3ruf_A          160 ---ALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY---G--FKTIGLRYFNVFGRRQD  211 (351)
T ss_dssp             ---CSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CCCEEEEECSEESTTCC
T ss_pred             ---CCCCccCCCCCCCChhHHHHHHHHHHHHHHHHHh---C--CCEEEEeeCceeCcCCC
Confidence               1245555566677899999999999999888776   4  78888999999987543

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.88  E-value=2.1e-22  Score=174.60  Aligned_cols=186  Identities=20%  Similarity=0.087  Sum_probs=130.9

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++|++|||||+|+||++++++|+++|++|+++.|+.+...... .+..... ..++.++.+|++|.+++..+++     
T Consensus         3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (337)
T 2c29_D            3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVK-HLLDLPKAETHLTLWKADLADEGSFDEAIK-----   76 (337)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHH-HHHTSTTHHHHEEEEECCTTSTTTTHHHHT-----
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHH-HHHhcccCCCeEEEEEcCCCCHHHHHHHHc-----
Confidence            46799999999999999999999999999999999876543322 2211100 1257899999999988887775     


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                        .+|+|||+|+... ..  ..+...+.+++|+.|+.++++++.+..        ..++||++||..++++.+...  ..
T Consensus        77 --~~d~Vih~A~~~~-~~--~~~~~~~~~~~nv~gt~~ll~a~~~~~--------~~~riV~~SS~~~~~~~~~~~--~~  141 (337)
T 2c29_D           77 --GCTGVFHVATPMD-FE--SKDPENEVIKPTIEGMLGIMKSCAAAK--------TVRRLVFTSSAGTVNIQEHQL--PV  141 (337)
T ss_dssp             --TCSEEEECCCCCC-SS--CSSHHHHTHHHHHHHHHHHHHHHHHHS--------CCCEEEEECCGGGTSCSSSCC--SE
T ss_pred             --CCCEEEEeccccC-CC--CCChHHHHHHHHHHHHHHHHHHHHhCC--------CccEEEEeeeHhhcccCCCCC--cc
Confidence              4799999998542 11  123345689999999999999987643        135999999988665432111  11


Q ss_pred             CCcccCC---------CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          186 INDESAY---------NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       186 ~~~~~~~---------~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      +++....         ++...|+.+|.+.+.+++.++.+   .|  ++++.|+|+.+.+|..
T Consensus       142 ~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g--i~~~~lrp~~v~Gp~~  198 (337)
T 2c29_D          142 YDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE---NN--IDFITIIPTLVVGPFI  198 (337)
T ss_dssp             ECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH---HT--CCEEEEEECEEESCCS
T ss_pred             cCcccCCchhhhcccCCccchHHHHHHHHHHHHHHHHHH---cC--CcEEEEeCCceECCCC
Confidence            1111110         12346999999888877666543   35  8999999999999864

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.88  E-value=1.3e-22  Score=175.79  Aligned_cols=182  Identities=15%  Similarity=0.161  Sum_probs=130.2

Q ss_pred             ccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHH
Q 025275           18 AEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRK   97 (255)
Q Consensus        18 ~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~   97 (255)
                      ..+..+..+++++++|||||+|+||++++++|+++|++|++++|+.+...+..+.      -.++.++.+|++|.+++..
T Consensus         9 ~~~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~------l~~v~~~~~Dl~d~~~~~~   82 (330)
T 2pzm_A            9 HHSSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPP------VAGLSVIEGSVTDAGLLER   82 (330)
T ss_dssp             -----CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCS------CTTEEEEECCTTCHHHHHH
T ss_pred             ccccCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhc------cCCceEEEeeCCCHHHHHH
Confidence            3344466778899999999999999999999999999999999976543211111      1368899999999999999


Q ss_pred             HHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275           98 FASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus        98 ~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      +++++     ++|+||||||.....   +.+++.  +++|+.+++++++++...         +.++||++||...+.. 
T Consensus        83 ~~~~~-----~~D~vih~A~~~~~~---~~~~~~--~~~N~~~~~~l~~a~~~~---------~~~~iV~~SS~~~~~~-  142 (330)
T 2pzm_A           83 AFDSF-----KPTHVVHSAAAYKDP---DDWAED--AATNVQGSINVAKAASKA---------GVKRLLNFQTALCYGR-  142 (330)
T ss_dssp             HHHHH-----CCSEEEECCCCCSCT---TCHHHH--HHHHTHHHHHHHHHHHHH---------TCSEEEEEEEGGGGCS-
T ss_pred             HHhhc-----CCCEEEECCccCCCc---cccChh--HHHHHHHHHHHHHHHHHc---------CCCEEEEecCHHHhCC-
Confidence            99876     699999999975432   344555  999999999999998732         2469999999876432 


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEE-EEEeeCCc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNIT-ANSLHPGS  232 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~-vn~v~PG~  232 (255)
                      ....+ .++++..  .+...|+.+|++++.+++.+  ++....  || ++.+.||.
T Consensus       143 ~~~~~-~~~~E~~--~~~~~Y~~sK~~~e~~~~~~--~~~~~~--iR~~~v~gp~~  191 (330)
T 2pzm_A          143 PATVP-IPIDSPT--APFTSYGISKTAGEAFLMMS--DVPVVS--LRLANVTGPRL  191 (330)
T ss_dssp             CSSSS-BCTTCCC--CCCSHHHHHHHHHHHHHHTC--SSCEEE--EEECEEECTTC
T ss_pred             CccCC-CCcCCCC--CCCChHHHHHHHHHHHHHHc--CCCEEE--EeeeeeECcCC
Confidence            11110 0222322  35678999999999988877  332222  66 56666764

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.88  E-value=1.2e-21  Score=170.42  Aligned_cols=183  Identities=17%  Similarity=0.124  Sum_probs=137.0

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch------HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA------GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +|++|||||+|+||++++++|+++|++|++++|+...      ..+..+++.... +.++.++.+|++|.+++..++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~   80 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKKY   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHHhc
Confidence            5789999999999999999999999999999986533      223334443321 346889999999999999888863


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                           ++|+|||+||.....  .+.+++.+.+++|+.++.++++++..         .+.++||++||...+. .+..  
T Consensus        81 -----~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~---------~~~~~iv~~SS~~~~g-~~~~--  141 (348)
T 1ek6_A           81 -----SFMAVIHFAGLKAVG--ESVQKPLDYYRVNLTGTIQLLEIMKA---------HGVKNLVFSSSATVYG-NPQY--  141 (348)
T ss_dssp             -----CEEEEEECCSCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHHH---------TTCCEEEEEEEGGGGC-SCSS--
T ss_pred             -----CCCEEEECCCCcCcc--chhhchHHHHHHHHHHHHHHHHHHHH---------hCCCEEEEECcHHHhC-CCCC--
Confidence                 699999999964321  13456778899999999999987642         1246999999976543 2211  


Q ss_pred             CCCCCcccCCCC-ccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          183 FDKINDESAYNS-FGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       183 ~~~~~~~~~~~~-~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                       .++++..+..+ ...|+.+|++++.+++.++.+ . .+  +++..++|+.+..+
T Consensus       142 -~~~~E~~~~~p~~~~Y~~sK~~~e~~~~~~~~~-~-~~--~~~~~lR~~~v~G~  191 (348)
T 1ek6_A          142 -LPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQA-D-KT--WNAVLLRYFNPTGA  191 (348)
T ss_dssp             -SSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHH-C-TT--CEEEEEEECEEECC
T ss_pred             -CCcCCCCCCCCCCCchHHHHHHHHHHHHHHHhc-C-CC--cceEEEeeccccCC
Confidence             23344444434 678999999999999998877 2 23  88888999988766

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.88  E-value=3.9e-22  Score=173.45  Aligned_cols=189  Identities=14%  Similarity=0.092  Sum_probs=136.4

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ++.++++++|||||+|+||.+++++|+++|  .+|++.+|.....  ..+.+.......++.++.+|++|.+++..+++.
T Consensus        19 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   96 (346)
T 4egb_A           19 YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSG--NLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKE   96 (346)
T ss_dssp             -----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTC--CGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccccc--chhhhhhhccCCCeEEEEcCCCCHHHHHHHHhh
Confidence            355778999999999999999999999999  6777777764211  111222222235789999999999999999987


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      .     ++|+|||+|+.....  .+.+++.+.+++|+.++.++++++.+.         +.+++|++||...+...+   
T Consensus        97 ~-----~~d~Vih~A~~~~~~--~~~~~~~~~~~~nv~~~~~ll~a~~~~---------~~~~~v~~SS~~vy~~~~---  157 (346)
T 4egb_A           97 R-----DVQVIVNFAAESHVD--RSIENPIPFYDTNVIGTVTLLELVKKY---------PHIKLVQVSTDEVYGSLG---  157 (346)
T ss_dssp             H-----TCCEEEECCCCC-----------CHHHHHHTHHHHHHHHHHHHS---------TTSEEEEEEEGGGGCCCC---
T ss_pred             c-----CCCEEEECCcccchh--hhhhCHHHHHHHHHHHHHHHHHHHHhc---------CCCEEEEeCchHHhCCCC---
Confidence            5     599999999975432  244567788999999999999888643         235899999976554322   


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      ...++++..+..+...|+.+|.+.+.+++.++.+.   +  ++++.++|+.+.++..
T Consensus       158 ~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g--~~~~ilRp~~v~G~~~  209 (346)
T 4egb_A          158 KTGRFTEETPLAPNSPYSSSKASADMIALAYYKTY---Q--LPVIVTRCSNNYGPYQ  209 (346)
T ss_dssp             SSCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CCEEEEEECEEESTTC
T ss_pred             cCCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh---C--CCEEEEeecceeCcCC
Confidence            12345566667777899999999999999888765   4  7888899999998753

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.88  E-value=6.1e-23  Score=169.91  Aligned_cols=157  Identities=15%  Similarity=0.059  Sum_probs=124.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++|++|||||+|+||++++++|+++|+  +|++++|+.+.+....        ..++.++.+|++|++++..+++    
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~----   83 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--------YKNVNQEVVDFEKLDDYASAFQ----   83 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--------GGGCEEEECCGGGGGGGGGGGS----
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc--------cCCceEEecCcCCHHHHHHHhc----
Confidence            5689999999999999999999999999  9999999976543211        1257899999999988776664    


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                         ++|+||||||....     .+.+.+.+++|+.++.++++++.    +     .+.++||++||..+..         
T Consensus        84 ---~~d~vi~~ag~~~~-----~~~~~~~~~~n~~~~~~~~~~~~----~-----~~~~~iv~~SS~~~~~---------  137 (242)
T 2bka_A           84 ---GHDVGFCCLGTTRG-----KAGAEGFVRVDRDYVLKSAELAK----A-----GGCKHFNLLSSKGADK---------  137 (242)
T ss_dssp             ---SCSEEEECCCCCHH-----HHHHHHHHHHHTHHHHHHHHHHH----H-----TTCCEEEEECCTTCCT---------
T ss_pred             ---CCCEEEECCCcccc-----cCCcccceeeeHHHHHHHHHHHH----H-----CCCCEEEEEccCcCCC---------
Confidence               69999999996321     24567889999999999888754    2     2346999999987543         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcE-EEEEeeCCceecCcc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNI-TANSLHPGSIVTNLF  238 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i-~vn~v~PG~v~t~~~  238 (255)
                              .+...|+.+|++++.+++.+       +  + +++.|+||.+.|+..
T Consensus       138 --------~~~~~Y~~sK~~~e~~~~~~-------~--~~~~~~vrpg~v~~~~~  175 (242)
T 2bka_A          138 --------SSNFLYLQVKGEVEAKVEEL-------K--FDRYSVFRPGVLLCDRQ  175 (242)
T ss_dssp             --------TCSSHHHHHHHHHHHHHHTT-------C--CSEEEEEECCEEECTTG
T ss_pred             --------CCcchHHHHHHHHHHHHHhc-------C--CCCeEEEcCceecCCCC
Confidence                    13357999999998887653       3  5 799999999999964

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=99.88  E-value=9.7e-22  Score=171.00  Aligned_cols=192  Identities=15%  Similarity=0.048  Sum_probs=146.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHH-HcCCeEEEEEeccch------------HHHHHHHHHhhCCCCceEEEEeCCCC
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLA-LRGVHVIMAVRNMAA------------GKDVREAIVKEIPSAKVDAMELDVSS   91 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~-~~G~~Vi~~~r~~~~------------~~~~~~~~~~~~~~~~~~~~~~Dl~~   91 (255)
                      .....|++|||||++|||++++..|+ +.|++++++++..+.            .....+.+.+.  +.+...+.||+++
T Consensus        46 ~~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~--G~~a~~i~~Dv~d  123 (401)
T 4ggo_A           46 GAKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKRE--GLYSVTIDGDAFS  123 (401)
T ss_dssp             TSCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHH--TCCEEEEESCTTS
T ss_pred             ccCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHc--CCCceeEeCCCCC
Confidence            34668999999999999999999999 689999999886542            23445556665  7789999999999


Q ss_pred             HHHHHHHHHHHhcCCCCeeEEEEccCCCCC--CC---------------------C-------------CChHHHH---H
Q 025275           92 LASVRKFASEYNSQGRPLNILINNAGIMAS--PF---------------------M-------------LSKDNIE---L  132 (255)
Q Consensus        92 ~~si~~~~~~~~~~~g~id~lv~~ag~~~~--~~---------------------~-------------~~~~~~~---~  132 (255)
                      +++++++++++.+.+|++|+|||+++....  +.                     +             .+.+++.   +
T Consensus       124 ~e~i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~  203 (401)
T 4ggo_A          124 DEIKAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVK  203 (401)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHH
Confidence            999999999999999999999999996521  00                     0             1223333   3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHH
Q 025275          133 QFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKEL  212 (255)
Q Consensus       133 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~l  212 (255)
                      .+.......|...+...+.|.+       ++++|.+|++.+...+|             ......++.+|++++..++.|
T Consensus       204 vMg~s~~s~w~~al~~a~lla~-------G~siva~SYiGse~t~P-------------~Y~~G~mG~AKaaLEa~~r~L  263 (401)
T 4ggo_A          204 VMGGEDWERWIKQLSKEGLLEE-------GCITLAYSYIGPEATQA-------------LYRKGTIGKAKEHLEATAHRL  263 (401)
T ss_dssp             HHSSHHHHHHHHHHHHTTCEEE-------EEEEEEEECCCCGGGHH-------------HHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHhhhcccC-------CceEEEEeccCcceeec-------------CCCccHHHHHHHHHHHHHHHH
Confidence            4444555566666666666643       78999999987654222             122347899999999999999


Q ss_pred             HHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          213 AKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       213 a~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      +.+++.    +++|++++|.+.|......+
T Consensus       264 a~eL~~----~~a~v~v~~a~vT~AssaIP  289 (401)
T 4ggo_A          264 NKENPS----IRAFVSVNKGLVTRASAVIP  289 (401)
T ss_dssp             HHHCTT----EEEEEEECCCCCCTTGGGSS
T ss_pred             HHhcCC----CcEEEEEcCccccchhhcCC
Confidence            999973    89999999999998665544

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.88  E-value=1.4e-22  Score=212.16  Aligned_cols=162  Identities=17%  Similarity=0.123  Sum_probs=129.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCe-EEEEEeccchH---HHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVH-VIMAVRNMAAG---KDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~-Vi~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+|++|||||++|||+++|++|+++|++ |++++|+..+.   .+..+++...  +.++.++.||++|.++++++++++.
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dvsd~~~v~~~~~~~~ 1960 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQ--GVQVLVSTSNASSLDGARSLITEAT 1960 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHT--TCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhC--CCEEEEEecCCCCHHHHHHHHHHHH
Confidence            6899999999999999999999999996 88899987654   3445555444  6689999999999999999999987


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      + +|++|+||||||+..  ++.+++.++|.+.+++|+.|++++.+++.+.+.+       .|+||++||.++..      
T Consensus      1961 ~-~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~-------~g~iV~iSS~ag~~------ 2026 (2512)
T 2vz8_A         1961 Q-LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPE-------LDYFVIFSSVSCGR------ 2026 (2512)
T ss_dssp             H-HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTT-------CCEEEEECCHHHHT------
T ss_pred             h-cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CCEEEEecchhhcC------
Confidence            4 789999999999864  4567899999999999999999999999988864       47999999999887      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHH
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAK  214 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~  214 (255)
                               +.+++..|+++|+++.+|++..+.
T Consensus      2027 ---------g~~g~~~Y~aaKaal~~l~~~rr~ 2050 (2512)
T 2vz8_A         2027 ---------GNAGQANYGFANSAMERICEKRRH 2050 (2512)
T ss_dssp             ---------TCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCCcHHHHHHHHHHHHHHHHHHH
Confidence                     455778999999999999997654

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.88  E-value=6.4e-22  Score=171.83  Aligned_cols=187  Identities=20%  Similarity=0.169  Sum_probs=140.1

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcC-------CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRG-------VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRK   97 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G-------~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~   97 (255)
                      +.++++++|||||+|+||.+++++|+++|       ++|++++|+.+....      .  ...++.++.+|++|++++..
T Consensus        10 ~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~------~--~~~~~~~~~~Dl~d~~~~~~   81 (342)
T 2hrz_A           10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA------G--FSGAVDARAADLSAPGEAEK   81 (342)
T ss_dssp             SCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT------T--CCSEEEEEECCTTSTTHHHH
T ss_pred             CCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc------c--cCCceeEEEcCCCCHHHHHH
Confidence            45778999999999999999999999999       799999998754321      1  14578899999999999888


Q ss_pred             HHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275           98 FASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus        98 ~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      +++      +++|+||||||....   .+.+++.+.+++|+.++.++++++.+...+.    +..++||++||...+.. 
T Consensus        82 ~~~------~~~d~vih~A~~~~~---~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~----~~~~~iv~~SS~~~~~~-  147 (342)
T 2hrz_A           82 LVE------ARPDVIFHLAAIVSG---EAELDFDKGYRINLDGTRYLFDAIRIANGKD----GYKPRVVFTSSIAVFGA-  147 (342)
T ss_dssp             HHH------TCCSEEEECCCCCHH---HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHH----CCCCEEEEEEEGGGCCS-
T ss_pred             HHh------cCCCEEEECCccCcc---cccccHHHHHHHHHHHHHHHHHHHHhccccc----CCCcEEEEeCchHhhCC-
Confidence            875      369999999996431   2346788899999999999999998765321    12469999999865432 


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEee--CCceecC
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLH--PGSIVTN  236 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~--PG~v~t~  236 (255)
                      ..   ..+++++.+..+...|+.+|++.+.+++.++.+..-....+|++.|.  ||.+.++
T Consensus       148 ~~---~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~  205 (342)
T 2hrz_A          148 PL---PYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAA  205 (342)
T ss_dssp             SC---CSSBCTTCCCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCS
T ss_pred             CC---CCCcCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcch
Confidence            11   12355555666778999999999999888876532111226777776  8876543

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.88  E-value=1.1e-21  Score=170.55  Aligned_cols=172  Identities=13%  Similarity=0.068  Sum_probs=132.7

Q ss_pred             ccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ..+.+.++|++|||||+|+||.+++++|+++|++|++++|+.+.              .++.++.+|++|.+++..+++ 
T Consensus        12 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--------------~~~~~~~~Dl~d~~~~~~~~~-   76 (347)
T 4id9_A           12 SGLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG--------------TGGEEVVGSLEDGQALSDAIM-   76 (347)
T ss_dssp             ---------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS--------------SCCSEEESCTTCHHHHHHHHT-
T ss_pred             CcccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC--------------CCccEEecCcCCHHHHHHHHh-
Confidence            35566789999999999999999999999999999999998754              357899999999999988876 


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                            ++|+|||+|+...    .+...+.+.+++|+.++.++++++.+.         +.++||++||...+...  ..
T Consensus        77 ------~~d~vih~A~~~~----~~~~~~~~~~~~nv~~~~~ll~a~~~~---------~~~~~V~~SS~~vyg~~--~~  135 (347)
T 4id9_A           77 ------GVSAVLHLGAFMS----WAPADRDRMFAVNVEGTRRLLDAASAA---------GVRRFVFASSGEVYPEN--RP  135 (347)
T ss_dssp             ------TCSEEEECCCCCC----SSGGGHHHHHHHHTHHHHHHHHHHHHT---------TCSEEEEEEEGGGTTTT--SC
T ss_pred             ------CCCEEEECCcccC----cchhhHHHHHHHHHHHHHHHHHHHHHc---------CCCeEEEECCHHHhCCC--CC
Confidence                  6899999998643    334456889999999999999988542         24599999997644321  01


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCcee
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV  234 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~  234 (255)
                      ...++.+..+..+...|+.+|.+.+.+++.++.+.   +  ++++.++|+.+.
T Consensus       136 ~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~ilRp~~v~  183 (347)
T 4id9_A          136 EFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSG---A--METVILRFSHTQ  183 (347)
T ss_dssp             SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS---S--SEEEEEEECEEE
T ss_pred             CCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHhc---C--CceEEEccceEe
Confidence            22345666677778899999999999998887764   4  888899999998

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.87  E-value=4e-22  Score=174.67  Aligned_cols=182  Identities=14%  Similarity=0.089  Sum_probs=132.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHH--cCCeEEEEEeccchHHHHH------HHHHhhCCCCceEEEEeCCCCHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLAL--RGVHVIMAVRNMAAGKDVR------EAIVKEIPSAKVDAMELDVSSLASV   95 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~--~G~~Vi~~~r~~~~~~~~~------~~~~~~~~~~~~~~~~~Dl~~~~si   95 (255)
                      .++++++++|||||+|+||++++++|++  .|++|++++|+........      ..... ..+.++.++.+|++|.+++
T Consensus         5 ~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~   83 (362)
T 3sxp_A            5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKN-LIGFKGEVIAADINNPLDL   83 (362)
T ss_dssp             SCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGG-GTTCCSEEEECCTTCHHHH
T ss_pred             chhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhh-ccccCceEEECCCCCHHHH
Confidence            4578899999999999999999999999  8999999999765211000      00011 1244679999999999988


Q ss_pred             HHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275           96 RKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus        96 ~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      +.+      ...++|+||||||....    +.+++.+.+++|+.++.++++++.    +      .+++||++||...+ 
T Consensus        84 ~~~------~~~~~D~vih~A~~~~~----~~~~~~~~~~~Nv~gt~~ll~aa~----~------~~~~~V~~SS~~vy-  142 (362)
T 3sxp_A           84 RRL------EKLHFDYLFHQAAVSDT----TMLNQELVMKTNYQAFLNLLEIAR----S------KKAKVIYASSAGVY-  142 (362)
T ss_dssp             HHH------TTSCCSEEEECCCCCGG----GCCCHHHHHHHHTHHHHHHHHHHH----H------TTCEEEEEEEGGGG-
T ss_pred             HHh------hccCCCEEEECCccCCc----cccCHHHHHHHHHHHHHHHHHHHH----H------cCCcEEEeCcHHHh-
Confidence            877      23479999999995432    446778899999999999999883    2      13469999995543 


Q ss_pred             ccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          176 AYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      +....    ++++..+..+...|+.+|++.+.+++.++.+       +++..|+|+.+..|..
T Consensus       143 g~~~~----~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~-------~~~~~lR~~~v~Gp~~  194 (362)
T 3sxp_A          143 GNTKA----PNVVGKNESPENVYGFSKLCMDEFVLSHSND-------NVQVGLRYFNVYGPRE  194 (362)
T ss_dssp             CSCCS----SBCTTSCCCCSSHHHHHHHHHHHHHHHTTTT-------SCEEEEEECSEESTTC
T ss_pred             CCCCC----CCCCCCCCCCCChhHHHHHHHHHHHHHHhcc-------CCEEEEEeCceeCcCC
Confidence            32221    4555556667788999999999888877654       3344577777776643

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.87  E-value=7.4e-22  Score=169.35  Aligned_cols=176  Identities=19%  Similarity=0.196  Sum_probs=134.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++|||||+|+||++++++|+++|++|++++|..+...+   .   .  ..++.++.+|++|.+++.+++++.     ++|
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~---~--~~~~~~~~~Dl~~~~~~~~~~~~~-----~~d   68 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE---N---V--PKGVPFFRVDLRDKEGVERAFREF-----RPT   68 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG---G---S--CTTCCEECCCTTCHHHHHHHHHHH-----CCS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh---h---c--ccCeEEEECCCCCHHHHHHHHHhc-----CCC
Confidence            69999999999999999999999999999985432111   0   1  135778999999999999988864     689


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc-ccCccCCCCCcc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY-SEGIRFDKINDE  189 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~-~~~~~~~~~~~~  189 (255)
                      ++||+|+....  ..+.+++.+.+++|+.+++++++++.+.         ..++||++||..+.++. ...   .++++.
T Consensus        69 ~vi~~a~~~~~--~~~~~~~~~~~~~N~~g~~~l~~a~~~~---------~~~~iv~~SS~~~~~g~~~~~---~~~~E~  134 (311)
T 2p5y_A           69 HVSHQAAQASV--KVSVEDPVLDFEVNLLGGLNLLEACRQY---------GVEKLVFASTGGAIYGEVPEG---ERAEET  134 (311)
T ss_dssp             EEEECCSCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHT---------TCSEEEEEEEHHHHHCCCCTT---CCBCTT
T ss_pred             EEEECccccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHHh---------CCCEEEEeCCChhhcCCCCCC---CCcCCC
Confidence            99999986431  1234567889999999999999988531         24599999998444432 111   123344


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .+..+...|+.+|++++.+++.++.++   +  ++++.++|+.+.+|..
T Consensus       135 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~--~~~~~lrp~~v~Gp~~  178 (311)
T 2p5y_A          135 WPPRPKSPYAASKAAFEHYLSVYGQSY---G--LKWVSLRYGNVYGPRQ  178 (311)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CCEEEEEECEEECTTC
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHHc---C--CCEEEEeeccccCcCC
Confidence            455566789999999999999988775   4  8899999999999853

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.87  E-value=7.5e-22  Score=169.19  Aligned_cols=172  Identities=16%  Similarity=0.183  Sum_probs=135.2

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |++|||||+|+||++++++|+++|++|++++|+.+...+..        ...+.++.+|++|.+ +..+++       . 
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~~Dl~d~~-~~~~~~-------~-   63 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV--------NPSAELHVRDLKDYS-WGAGIK-------G-   63 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS--------CTTSEEECCCTTSTT-TTTTCC-------C-
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc--------CCCceEEECccccHH-HHhhcC-------C-
Confidence            47999999999999999999999999999999876532211        346889999999976 544332       3 


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+|+...  ...+.+++...+++|+.++.++++++...         +.++||++||...+.. .   +..+++++
T Consensus        64 d~vih~A~~~~--~~~~~~~~~~~~~~n~~~~~~l~~a~~~~---------~~~~iv~~SS~~vyg~-~---~~~~~~e~  128 (312)
T 3ko8_A           64 DVVFHFAANPE--VRLSTTEPIVHFNENVVATFNVLEWARQT---------GVRTVVFASSSTVYGD-A---DVIPTPEE  128 (312)
T ss_dssp             SEEEECCSSCS--SSGGGSCHHHHHHHHHHHHHHHHHHHHHH---------TCCEEEEEEEGGGGCS-C---SSSSBCTT
T ss_pred             CEEEECCCCCC--chhhhhCHHHHHHHHHHHHHHHHHHHHHc---------CCCEEEEeCcHHHhCC-C---CCCCCCCC
Confidence            99999999532  23456678889999999999999988532         2359999999775532 2   22345556


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .+..+...|+.+|++.+.+++.++.++   +  ++++.++||.+.+|..
T Consensus       129 ~~~~p~~~Y~~sK~~~e~~~~~~~~~~---g--~~~~~lrp~~v~g~~~  172 (312)
T 3ko8_A          129 EPYKPISVYGAAKAAGEVMCATYARLF---G--VRCLAVRYANVVGPRL  172 (312)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECEEECTTC
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHHh---C--CCEEEEeeccccCcCC
Confidence            677778899999999999999998877   4  8999999999999864

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.87  E-value=4.1e-21  Score=168.45  Aligned_cols=184  Identities=14%  Similarity=0.066  Sum_probs=129.8

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHH-HHHHHHHhhC--CCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGK-DVREAIVKEI--PSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~-~~~~~~~~~~--~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+....  .+.++.++.+|++|.+++..+++.+   
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---   77 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV---   77 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH---
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhc---
Confidence            378999999999999999999999999999999865421 1122221110  1346889999999999999999876   


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                        ++|+||||||....  ..+.+++.+.+++|+.++.++++++.+...+      +.++||++||...+... .   ..+
T Consensus        78 --~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~------~~~~iv~~SS~~v~g~~-~---~~~  143 (372)
T 1db3_A           78 --QPDEVYNLGAMSHV--AVSFESPEYTADVDAMGTLRLLEAIRFLGLE------KKTRFYQASTSELYGLV-Q---EIP  143 (372)
T ss_dssp             --CCSEEEECCCCCTT--TTTTSCHHHHHHHHTHHHHHHHHHHHHTTCT------TTCEEEEEEEGGGGTTC-C---SSS
T ss_pred             --CCCEEEECCcccCc--cccccCHHHHHHHHHHHHHHHHHHHHHhCCC------CCcEEEEeCChhhhCCC-C---CCC
Confidence              68999999997543  2344567888999999999999998765421      23699999997654321 1   123


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCcee
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV  234 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~  234 (255)
                      +++..+..+...|+.+|++++.+++.++.++.     +.+..+.|..+.
T Consensus       144 ~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-----~~~~~~r~~~~~  187 (372)
T 1db3_A          144 QKETTPFYPRSPYAVAKLYAYWITVNYRESYG-----MYACNGILFNHE  187 (372)
T ss_dssp             BCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC-----CCEEEEEECCEE
T ss_pred             CCccCCCCCCChHHHHHHHHHHHHHHHHHHhC-----CCeEEEEECCcc
Confidence            44555666678999999999999999987764     333335544443

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.87  E-value=5.3e-21  Score=168.58  Aligned_cols=170  Identities=13%  Similarity=0.073  Sum_probs=130.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-----HHHHHHHHHhhCCCC-ceEEEEeCCCCHHHHHHHHHHHh
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-----GKDVREAIVKEIPSA-KVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-----~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      |++|||||+|+||.+++++|+++|++|++++|+.+.     ++...+.+...  +. ++.++.+|++|.+++..+++.+ 
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~-  105 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNV--NKALMKLHYADLTDASSLRRWIDVI-  105 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC----------CCEEEEECCTTCHHHHHHHHHHH-
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccc--cccceEEEECCCCCHHHHHHHHHhc-
Confidence            789999999999999999999999999999998654     22221111111  22 6889999999999999999876 


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                          ++|+|||+||....  ..+.+++...+++|+.++.++++++.+...+.    ++.++||++||...+.... .   
T Consensus       106 ----~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~----~~~~~~v~~SS~~vyg~~~-~---  171 (381)
T 1n7h_A          106 ----KPDEVYNLAAQSHV--AVSFEIPDYTADVVATGALRLLEAVRSHTIDS----GRTVKYYQAGSSEMFGSTP-P---  171 (381)
T ss_dssp             ----CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHH----CCCCEEEEEEEGGGGTTSC-S---
T ss_pred             ----CCCEEEECCcccCc--cccccCHHHHHHHHHHHHHHHHHHHHHhCCcc----CCccEEEEeCcHHHhCCCC-C---
Confidence                68999999996432  12346678899999999999999999887542    2356999999977543211 1   


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHh
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLK  217 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~  217 (255)
                       ++++..+..+...|+.+|++.+.+++.++.++.
T Consensus       172 -~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~  204 (381)
T 1n7h_A          172 -PQSETTPFHPRSPYAASKCAAHWYTVNYREAYG  204 (381)
T ss_dssp             -SBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Confidence             345555666778999999999999999987764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.87  E-value=4.3e-21  Score=156.90  Aligned_cols=152  Identities=11%  Similarity=0.131  Sum_probs=115.1

Q ss_pred             cEEEEecCCCchHHHHHHHHH-HcCCeEEEEEeccc-hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           30 LTAIVTGASSGIGTETARVLA-LRGVHVIMAVRNMA-AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~-~~G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      |+++||||+|+||++++++|+ +.|++|++++|+.+ +++++.    ..  ..++.++.+|++|++++.++++       
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~~D~~d~~~~~~~~~-------   72 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----ID--HERVTVIEGSFQNPGXLEQAVT-------   72 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----HT--STTEEEEECCTTCHHHHHHHHT-------
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----cC--CCceEEEECCCCCHHHHHHHHc-------
Confidence            789999999999999999999 89999999999976 544332    12  4578999999999999998886       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+||||||..                 |+.     ++.+++.+++     .+.++||++||..+....+...     .
T Consensus        73 ~~d~vv~~ag~~-----------------n~~-----~~~~~~~~~~-----~~~~~iv~iSs~~~~~~~~~~~-----~  120 (221)
T 3r6d_A           73 NAEVVFVGAMES-----------------GSD-----MASIVKALSR-----XNIRRVIGVSMAGLSGEFPVAL-----E  120 (221)
T ss_dssp             TCSEEEESCCCC-----------------HHH-----HHHHHHHHHH-----TTCCEEEEEEETTTTSCSCHHH-----H
T ss_pred             CCCEEEEcCCCC-----------------Chh-----HHHHHHHHHh-----cCCCeEEEEeeceecCCCCccc-----c
Confidence            589999999852                 232     7778888876     4467999999988654211100     0


Q ss_pred             cccCCCCcc-chHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          188 DESAYNSFG-AYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       188 ~~~~~~~~~-~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      .. ...... .|+.+|.+++.+++.       .+  |+++.|+||++.++
T Consensus       121 ~~-~~~~~~~~y~~~K~~~e~~~~~-------~~--i~~~~vrpg~v~~~  160 (221)
T 3r6d_A          121 KW-TFDNLPISYVQGERQARNVLRE-------SN--LNYTILRLTWLYND  160 (221)
T ss_dssp             HH-HHHTSCHHHHHHHHHHHHHHHH-------SC--SEEEEEEECEEECC
T ss_pred             cc-cccccccHHHHHHHHHHHHHHh-------CC--CCEEEEechhhcCC
Confidence            00 000112 799999998876653       45  99999999999987

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.86  E-value=3.8e-21  Score=166.38  Aligned_cols=183  Identities=15%  Similarity=0.064  Sum_probs=135.5

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHH-HHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGK-DVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ..++++|||||+|+||++++++|+++|++|++++|+.+... ...+.+   ....++.++.+|++|.+++..+++.+   
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~---   85 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL---GIEGDIQYEDGDMADACSVQRAVIKA---   85 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHT---TCGGGEEEEECCTTCHHHHHHHHHHH---
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhc---cccCceEEEECCCCCHHHHHHHHHHc---
Confidence            34688999999999999999999999999999999876421 111111   11346889999999999999999876   


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                        ++|+|||+||....  ..+.+++.+.+++|+.++.++++++.+.-        ..+++|++||...+.. ...   .+
T Consensus        86 --~~d~Vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~a~~~~~--------~~~~~v~~SS~~v~g~-~~~---~~  149 (335)
T 1rpn_A           86 --QPQEVYNLAAQSFV--GASWNQPVTTGVVDGLGVTHLLEAIRQFS--------PETRFYQASTSEMFGL-IQA---ER  149 (335)
T ss_dssp             --CCSEEEECCSCCCH--HHHTTSHHHHHHHHTHHHHHHHHHHHHHC--------TTSEEEEEEEGGGGCS-CSS---SS
T ss_pred             --CCCEEEECccccch--hhhhhChHHHHHHHHHHHHHHHHHHHHhC--------CCCeEEEEeCHHHhCC-CCC---CC
Confidence              68999999996432  11234567889999999999999886431        1259999999765432 111   23


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      +++..+..+...|+.+|++.+.+++.++.++.     +.+..+.|+.+..+
T Consensus       150 ~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~-----~~~~i~r~~~v~Gp  195 (335)
T 1rpn_A          150 QDENTPFYPRSPYGVAKLYGHWITVNYRESFG-----LHASSGILFNHESP  195 (335)
T ss_dssp             BCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC-----CCEEEEEECCEECT
T ss_pred             CCcccCCCCCChhHHHHHHHHHHHHHHHHHcC-----CcEEEEeeCcccCC
Confidence            44555666677899999999999999887663     55666888877665

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.86  E-value=4.5e-21  Score=166.27  Aligned_cols=172  Identities=19%  Similarity=0.157  Sum_probs=127.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++|||||+|+||++++++|+++|++|++++|+.+..+..    .    ..++.++.+|++|.+++..+++       ++
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l----~----~~~~~~~~~Dl~d~~~~~~~~~-------~~   78 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL----A----YLEPECRVAEMLDHAGLERALR-------GL   78 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGG----G----GGCCEEEECCTTCHHHHHHHTT-------TC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhh----c----cCCeEEEEecCCCHHHHHHHHc-------CC
Confidence            4799999999999999999999999999999987654321    1    1257899999999998887775       58


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+|+...    .+.+++.+.+++|+.++.++++++.+.-         .++||++||...+...+...   .++++
T Consensus        79 d~vih~a~~~~----~~~~~~~~~~~~n~~~~~~l~~a~~~~~---------~~~~v~~SS~~~~~~~~~~~---~~~E~  142 (342)
T 2x4g_A           79 DGVIFSAGYYP----SRPRRWQEEVASALGQTNPFYAACLQAR---------VPRILYVGSAYAMPRHPQGL---PGHEG  142 (342)
T ss_dssp             SEEEEC----------------CHHHHHHHHHHHHHHHHHHHT---------CSCEEEECCGGGSCCCTTSS---CBCTT
T ss_pred             CEEEECCccCc----CCCCCHHHHHHHHHHHHHHHHHHHHHcC---------CCeEEEECCHHhhCcCCCCC---CCCCC
Confidence            99999999643    2345677889999999999999997642         35999999987654322110   11344


Q ss_pred             cCCCC----ccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          190 SAYNS----FGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       190 ~~~~~----~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .+..+    ...|+.+|++.+.+++.++.   . +  ++++.|+||.+.++..
T Consensus       143 ~~~~p~~~~~~~Y~~sK~~~e~~~~~~~~---~-g--~~~~ilrp~~v~g~~~  189 (342)
T 2x4g_A          143 LFYDSLPSGKSSYVLCKWALDEQAREQAR---N-G--LPVVIGIPGMVLGELD  189 (342)
T ss_dssp             CCCSSCCTTSCHHHHHHHHHHHHHHHHHH---T-T--CCEEEEEECEEECSCC
T ss_pred             CCCCccccccChHHHHHHHHHHHHHHHhh---c-C--CcEEEEeCCceECCCC
Confidence            45555    67899999999999988875   2 5  8899999999999865

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.86  E-value=9.8e-21  Score=163.46  Aligned_cols=175  Identities=15%  Similarity=0.166  Sum_probs=135.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |++|||||+|+||++++++|+++|++|++++|+.....   +    .. ..++.++.+|++|.+++.+++++     .++
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~----~~-~~~~~~~~~D~~~~~~~~~~~~~-----~~~   68 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE---D----AI-TEGAKFYNGDLRDKAFLRDVFTQ-----ENI   68 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG---G----GS-CTTSEEEECCTTCHHHHHHHHHH-----SCE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch---h----hc-CCCcEEEECCCCCHHHHHHHHhh-----cCC
Confidence            57999999999999999999999999999998765422   1    11 12688999999999999988876     269


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+|+.....  .+.+++.+.+++|+.++.++++++...         +.+++|++||...+. ...   ..++++.
T Consensus        69 d~vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~---------~~~~~v~~Ss~~~~~-~~~---~~~~~E~  133 (330)
T 2c20_A           69 EAVMHFAADSLVG--VSMEKPLQYYNNNVYGALCLLEVMDEF---------KVDKFIFSSTAATYG-EVD---VDLITEE  133 (330)
T ss_dssp             EEEEECCCCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHHHT---------TCCEEEEECCGGGGC-SCS---SSSBCTT
T ss_pred             CEEEECCcccCcc--ccccCHHHHHHHHhHHHHHHHHHHHHc---------CCCEEEEeCCceeeC-CCC---CCCCCcC
Confidence            9999999964321  134567889999999999999887431         245999999976543 221   1234555


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .+..+...|+.+|++.+.+++.++.++   +  ++++.++|+.+.++.
T Consensus       134 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~--~~~~ilrp~~v~G~~  176 (330)
T 2c20_A          134 TMTNPTNTYGETKLAIEKMLHWYSQAS---N--LRYKIFRYFNVAGAT  176 (330)
T ss_dssp             SCCCCSSHHHHHHHHHHHHHHHHHHTS---S--CEEEEEECSEEECCC
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHHh---C--CcEEEEecCcccCCC
Confidence            566667899999999999998887654   4  899999999998874

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.86  E-value=1.1e-21  Score=162.81  Aligned_cols=168  Identities=14%  Similarity=0.037  Sum_probs=124.0

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHc--CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALR--GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++|++|||||+|+||++++++|+++  |++|++++|+.++..+    +     ..++.++.+|++|.+++.++++    
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~----~-----~~~~~~~~~D~~d~~~~~~~~~----   68 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK----I-----GGEADVFIGDITDADSINPAFQ----   68 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHH----T-----TCCTTEEECCTTSHHHHHHHHT----
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhh----c-----CCCeeEEEecCCCHHHHHHHHc----
Confidence            45689999999999999999999999  8999999998654322    1     2367899999999999988886    


Q ss_pred             CCCCeeEEEEccCCCCCC-----------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275          105 QGRPLNILINNAGIMASP-----------FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~-----------~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                         .+|+||||||.....           .+...+.+.+.+++|+.++.++++++.+.         +.++||++||..+
T Consensus        69 ---~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~iv~~SS~~~  136 (253)
T 1xq6_A           69 ---GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA---------GVKHIVVVGSMGG  136 (253)
T ss_dssp             ---TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH---------TCSEEEEEEETTT
T ss_pred             ---CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc---------CCCEEEEEcCccC
Confidence               489999999975321           11122344567899999999999887543         2359999999875


Q ss_pred             ccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          174 RFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .....         ...++ ....|+.+|++++.+++.       .+  ++++.|+||.+.++..
T Consensus       137 ~~~~~---------~~~~~-~~~~y~~sK~~~e~~~~~-------~~--i~~~~vrpg~v~~~~~  182 (253)
T 1xq6_A          137 TNPDH---------PLNKL-GNGNILVWKRKAEQYLAD-------SG--TPYTIIRAGGLLDKEG  182 (253)
T ss_dssp             TCTTC---------GGGGG-GGCCHHHHHHHHHHHHHT-------SS--SCEEEEEECEEECSCS
T ss_pred             CCCCC---------ccccc-cchhHHHHHHHHHHHHHh-------CC--CceEEEecceeecCCc
Confidence            42100         00011 113578899998877652       45  8999999999999853

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.86  E-value=1.4e-21  Score=164.19  Aligned_cols=164  Identities=20%  Similarity=0.169  Sum_probs=130.5

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |++|||||+|+||++++++|+++|++|++++|+.+...           ...+.++.+|++|++++..+++       ++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~-------~~   64 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA-----------EAHEEIVACDLADAQAVHDLVK-------DC   64 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC-----------CTTEEECCCCTTCHHHHHHHHT-------TC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc-----------CCCccEEEccCCCHHHHHHHHc-------CC
Confidence            68999999999999999999999999999999875410           1257889999999999888876       48


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+||||||..      ..+.+.+.+++|+.++.++++++.+.         +.++||++||...+...+..   .++++.
T Consensus        65 d~vi~~a~~~------~~~~~~~~~~~n~~~~~~l~~a~~~~---------~~~~iv~~SS~~~~~~~~~~---~~~~E~  126 (267)
T 3ay3_A           65 DGIIHLGGVS------VERPWNDILQANIIGAYNLYEAARNL---------GKPRIVFASSNHTIGYYPRT---TRIDTE  126 (267)
T ss_dssp             SEEEECCSCC------SCCCHHHHHHHTHHHHHHHHHHHHHT---------TCCEEEEEEEGGGSTTSBTT---SCBCTT
T ss_pred             CEEEECCcCC------CCCCHHHHHHHHHHHHHHHHHHHHHh---------CCCEEEEeCCHHHhCCCCCC---CCCCCC
Confidence            9999999964      23456788999999999999988632         24699999998765432222   234555


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCcee
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV  234 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~  234 (255)
                      .+..+...|+.+|++++.+++.++.   ..+  ++++.|+||.+.
T Consensus       127 ~~~~~~~~Y~~sK~~~e~~~~~~~~---~~g--i~~~~lrp~~v~  166 (267)
T 3ay3_A          127 VPRRPDSLYGLSKCFGEDLASLYYH---KFD--IETLNIRIGSCF  166 (267)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHH---TTC--CCEEEEEECBCS
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHHH---HcC--CCEEEEeceeec
Confidence            5666678999999999999988753   345  899999999983

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.86  E-value=1.3e-20  Score=163.36  Aligned_cols=181  Identities=19%  Similarity=0.110  Sum_probs=129.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++|||||+|+||++++++|+++|++|++++|......+..+.+.... +.++.++.+|++|++++..++++.     ++|
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~-----~~D   75 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDH-----AID   75 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHT-----TCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhcc-----CCC
Confidence            69999999999999999999999999999875432222223332221 346789999999999999888763     599


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES  190 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~  190 (255)
                      +||||||.....  ...+++.+.+++|+.+++++++++...         +.++||++||...+. ....   .++++..
T Consensus        76 ~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~iv~~SS~~~~g-~~~~---~~~~e~~  140 (338)
T 1udb_A           76 TVIHFAGLKAVG--ESVQKPLEYYDNNVNGTLRLISAMRAA---------NVKNFIFSSSATVYG-DNPK---IPYVESF  140 (338)
T ss_dssp             EEEECCSCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHHHH---------TCCEEEEEEEGGGGC-SCCS---SSBCTTS
T ss_pred             EEEECCccCccc--cchhcHHHHHHHHHHHHHHHHHHHHhc---------CCCeEEEEccHHHhC-CCCC---CCcCccc
Confidence            999999964211  123456678999999999999875431         245999999976543 2211   1233333


Q ss_pred             CC-CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          191 AY-NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       191 ~~-~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      +. ++...|+.+|++++.+++.++.+.  .+  +++..+.|+.+..+
T Consensus       141 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~--~~~~ilR~~~v~G~  183 (338)
T 1udb_A          141 PTGTPQSPYGKSKLMVEQILTDLQKAQ--PD--WSIALLRYFNPVGA  183 (338)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHHS--TT--CEEEEEEECEEECC
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHhc--CC--CceEEEeeceecCC
Confidence            43 236789999999999999998774  24  77777887666543

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.86  E-value=6.9e-21  Score=167.50  Aligned_cols=184  Identities=14%  Similarity=0.045  Sum_probs=134.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-----HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-----GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |++|||||+|+||++++++|+++|++|++++|+.+.     ++...+.+... ...++.++.+|++|.+++..+++.+  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~--  101 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAH-IEGNMKLHYGDLTDSTCLVKIINEV--  101 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC----------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccc-cCCCceEEEccCCCHHHHHHHHHhc--
Confidence            789999999999999999999999999999998653     22111111100 1346889999999999999999876  


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                         ++|+||||||....  ..+.+++.+.+++|+.++.++++++.+...+      +.++||++||...+....    ..
T Consensus       102 ---~~d~vih~A~~~~~--~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~------~~~~iv~~SS~~~~~~~~----~~  166 (375)
T 1t2a_A          102 ---KPTEIYNLGAQSHV--KISFDLAEYTADVDGVGTLRLLDAVKTCGLI------NSVKFYQASTSELYGKVQ----EI  166 (375)
T ss_dssp             ---CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCT------TTCEEEEEEEGGGTCSCS----SS
T ss_pred             ---CCCEEEECCCcccc--cccccCHHHHHHHHHHHHHHHHHHHHHhCCC------ccceEEEecchhhhCCCC----CC
Confidence               68999999996421  1234567889999999999999998765421      136999999987654211    12


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      +++++.+..+...|+.+|++++.+++.++.++.     +.+..+.|+.+..|
T Consensus       167 ~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-----~~~~i~r~~~~~gp  213 (375)
T 1t2a_A          167 PQKETTPFYPRSPYGAAKLYAYWIVVNFREAYN-----LFAVNGILFNHESP  213 (375)
T ss_dssp             SBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC-----CEEEEEEECCEECT
T ss_pred             CCCccCCCCCCChhHHHHHHHHHHHHHHHHHhC-----CCEEEEecccccCC
Confidence            344555556678999999999999999987763     55555776665544

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.86  E-value=8.5e-22  Score=170.79  Aligned_cols=184  Identities=15%  Similarity=0.089  Sum_probs=125.5

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH--HHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV--REAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +|++|||||+|+||++++++|+++|++|+++.|+.+.....  .+.+. .  ..++.++.+|++|.+++..+++      
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~--~~~~~~~~~Dl~d~~~~~~~~~------   79 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-E--LGDLKIFRADLTDELSFEAPIA------   79 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-G--GSCEEEEECCTTTSSSSHHHHT------
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-C--CCcEEEEecCCCChHHHHHHHc------
Confidence            68999999999999999999999999999999986543211  12221 1  2368899999999888887775      


Q ss_pred             CCeeEEEEccCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDN-IELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~-~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                       ++|+|||+|+...    ...++ ..+.+++|+.|++++++++.+..        ..++||++||..++++.+...+..+
T Consensus        80 -~~D~Vih~A~~~~----~~~~~~~~~~~~~nv~gt~~ll~aa~~~~--------~v~r~V~~SS~~~~~~~~~~~~~~~  146 (338)
T 2rh8_A           80 -GCDFVFHVATPVH----FASEDPENDMIKPAIQGVVNVMKACTRAK--------SVKRVILTSSAAAVTINQLDGTGLV  146 (338)
T ss_dssp             -TCSEEEEESSCCC----C---------CHHHHHHHHHHHHHHHHCT--------TCCEEEEECCHHHHHHHHHTCSCCC
T ss_pred             -CCCEEEEeCCccC----CCCCCcHHHHHHHHHHHHHHHHHHHHHcC--------CcCEEEEEecHHHeecCCcCCCCcc
Confidence             4799999998542    12222 24589999999999999987532        1359999999876543221110011


Q ss_pred             CCccc--------CCC-CccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          186 INDES--------AYN-SFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       186 ~~~~~--------~~~-~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      +++..        +.. ....|+.||++.+.+++.++.+   .|  ++++.|+|+.+.+|...
T Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g--i~~~~lrp~~v~Gp~~~  204 (338)
T 2rh8_A          147 VDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEE---NN--IDLITVIPTLMAGSSLT  204 (338)
T ss_dssp             CCTTTTTCC-------CCCCCCTTSCCHHHHHHHHHHHH---HT--CCEEEEEECEEESCCSS
T ss_pred             cChhhccchhhccccCCccchHHHHHHHHHHHHHHHHHH---cC--CcEEEEeCCceECCCCC
Confidence            22221        111 1126999999888777666543   25  88999999999998643

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.86  E-value=4.8e-21  Score=169.03  Aligned_cols=184  Identities=17%  Similarity=0.093  Sum_probs=136.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +..+++++|||||+|+||++++++|+++|++|++++|+.+.....      .  ..++.++.+|++|.+++..+++    
T Consensus        25 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------~--~~~v~~~~~Dl~d~~~~~~~~~----   92 (379)
T 2c5a_A           25 WPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE------D--MFCDEFHLVDLRVMENCLKVTE----   92 (379)
T ss_dssp             CTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG------G--GTCSEEEECCTTSHHHHHHHHT----
T ss_pred             ccccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh------c--cCCceEEECCCCCHHHHHHHhC----
Confidence            344668999999999999999999999999999999987643211      0  2357899999999999888875    


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc-cC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI-RF  183 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~-~~  183 (255)
                         ++|+|||+|+..... ....+++.+.+++|+.++.++++++.+.         +.++||++||...+....... +.
T Consensus        93 ---~~d~Vih~A~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~a~~~~---------~~~~~V~~SS~~v~~~~~~~~~~~  159 (379)
T 2c5a_A           93 ---GVDHVFNLAADMGGM-GFIQSNHSVIMYNNTMISFNMIEAARIN---------GIKRFFYASSACIYPEFKQLETTN  159 (379)
T ss_dssp             ---TCSEEEECCCCCCCH-HHHTTCHHHHHHHHHHHHHHHHHHHHHT---------TCSEEEEEEEGGGSCGGGSSSSSS
T ss_pred             ---CCCEEEECceecCcc-cccccCHHHHHHHHHHHHHHHHHHHHHc---------CCCEEEEEeehheeCCCCCCCccC
Confidence               689999999964321 1113467788999999999999988532         235999999976543211100 00


Q ss_pred             CCCCccc--CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          184 DKINDES--AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       184 ~~~~~~~--~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .++++..  +..+...|+.+|++.+.+++.++.++   +  ++++.|+||.+.++..
T Consensus       160 ~~~~E~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---g--i~~~ilrp~~v~G~~~  211 (379)
T 2c5a_A          160 VSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF---G--IECRIGRFHNIYGPFG  211 (379)
T ss_dssp             CEECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECCEECTTS
T ss_pred             CCcCcccCCCCCCCChhHHHHHHHHHHHHHHHHHH---C--CCEEEEEeCceeCcCC
Confidence            1122332  34456789999999999999988765   4  8999999999999853

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=99.85  E-value=6.1e-21  Score=163.79  Aligned_cols=171  Identities=15%  Similarity=0.153  Sum_probs=130.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |++|||||+|+||++++++|+++|..|++..++.......         ...+.++.+|+++ +++.++++       ++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~~---------~~~~~~~~~Dl~~-~~~~~~~~-------~~   64 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFV---------NEAARLVKADLAA-DDIKDYLK-------GA   64 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGGS---------CTTEEEECCCTTT-SCCHHHHT-------TC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhhc---------CCCcEEEECcCCh-HHHHHHhc-------CC
Confidence            5799999999999999999999995454444444322111         3468899999999 77877776       68


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+|+...  ...+.+++.+.+++|+.++.++++++...         +.++||++||...+.. ..   ..+++++
T Consensus        65 d~vih~a~~~~--~~~~~~~~~~~~~~nv~~~~~l~~~~~~~---------~~~~iv~~SS~~vyg~-~~---~~~~~E~  129 (313)
T 3ehe_A           65 EEVWHIAANPD--VRIGAENPDEIYRNNVLATYRLLEAMRKA---------GVSRIVFTSTSTVYGE-AK---VIPTPED  129 (313)
T ss_dssp             SEEEECCCCCC--CC-CCCCHHHHHHHHHHHHHHHHHHHHHH---------TCCEEEEECCGGGGCS-CS---SSSBCTT
T ss_pred             CEEEECCCCCC--hhhhhhCHHHHHHHHHHHHHHHHHHHHHc---------CCCeEEEeCchHHhCc-CC---CCCCCCC
Confidence            99999999532  33456678899999999999999886532         2459999999765532 22   2234455


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .+..+...|+.+|.+.+.+++.++.++   +  ++++.++|+.+.++.
T Consensus       130 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g--~~~~ilRp~~v~G~~  172 (313)
T 3ehe_A          130 YPTHPISLYGASKLACEALIESYCHTF---D--MQAWIYRFANVIGRR  172 (313)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHT---T--CEEEEEECSCEESTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHhc---C--CCEEEEeeccccCcC
Confidence            566777899999999999999998876   4  899999999999874

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.85  E-value=1e-20  Score=169.37  Aligned_cols=184  Identities=13%  Similarity=0.099  Sum_probs=131.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc---hHHHHHHHHHhhC-------CCCceEEEEeCCCCHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA---AGKDVREAIVKEI-------PSAKVDAMELDVSSLASV   95 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~---~~~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~si   95 (255)
                      ...++++|||||+|+||.+++++|++.|++|++++|+.+   ......+.+....       ...++.++.+|++|++++
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  145 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  145 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence            355789999999999999999999999999999999987   3333333333221       135799999999998777


Q ss_pred             HHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275           96 RKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus        96 ~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      .        .++++|+|||||+....     .+++.+.+++|+.++.++++++.+   .       ..++|++||... .
T Consensus       146 ~--------~~~~~d~Vih~A~~~~~-----~~~~~~~~~~Nv~g~~~l~~aa~~---~-------~~~~v~~SS~~~-G  201 (427)
T 4f6c_A          146 V--------LPENMDTIIHAGARTDH-----FGDDDEFEKVNVQGTVDVIRLAQQ---H-------HARLIYVSTISV-G  201 (427)
T ss_dssp             C--------CSSCCSEEEECCCCC------------CHHHHHHHHHHHHHHHHHH---T-------TCEEEEEEEGGG-G
T ss_pred             C--------CcCCCCEEEECCcccCC-----CCCHHHHHHHHHHHHHHHHHHHHh---c-------CCcEEEECchHh-C
Confidence            6        45689999999997532     346678899999999999999976   2       359999999886 2


Q ss_pred             ccccC-ccCCCCCcccC---CCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          176 AYSEG-IRFDKINDESA---YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       176 ~~~~~-~~~~~~~~~~~---~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      ..... .+..++.+..+   ..+...|+.+|.+.+.+++.++.    .|  ++++.|+||.|.++...
T Consensus       202 ~~~~~~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~g--~~~~ivRpg~v~G~~~~  263 (427)
T 4f6c_A          202 TYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN----NG--LDGRIVRVGNLTSPYNG  263 (427)
T ss_dssp             SEECSSCSCCEECTTCSCSSCCCCSHHHHHHHHHHHHHHHHHH----TT--CCEEEEEECCEESCSSS
T ss_pred             CCccCCCCCccccccccccCCCCCCchHHHHHHHHHHHHHHHH----cC--CCEEEEeCCeeecCCCC
Confidence            11110 01112222222   44678999999999998887643    56  89999999999988644

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.85  E-value=5.2e-21  Score=165.73  Aligned_cols=179  Identities=18%  Similarity=0.149  Sum_probs=134.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHc---C---CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           31 TAIVTGASSGIGTETARVLALR---G---VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~---G---~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++|||||+|+||++++++|+++   |   ++|++++|+.....  .+.+.......++.++.+|++|.+++..++     
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-----   74 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN--RANLAPVDADPRLRFVHGDIRDAGLLAREL-----   74 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC--GGGGGGGTTCTTEEEEECCTTCHHHHHHHT-----
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCc--hhhhhhcccCCCeEEEEcCCCCHHHHHHHh-----
Confidence            6999999999999999999997   8   89999998642100  001111111347899999999999888776     


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                        .++|+|||+||....  ..+.+++.+.+++|+.++.++++++.+..         .++||++||...+.... .   .
T Consensus        75 --~~~d~Vih~A~~~~~--~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~---------~~~~v~~SS~~vyg~~~-~---~  137 (337)
T 1r6d_A           75 --RGVDAIVHFAAESHV--DRSIAGASVFTETNVQGTQTLLQCAVDAG---------VGRVVHVSTNQVYGSID-S---G  137 (337)
T ss_dssp             --TTCCEEEECCSCCCH--HHHHHCCHHHHHHHTHHHHHHHHHHHHTT---------CCEEEEEEEGGGGCCCS-S---S
T ss_pred             --cCCCEEEECCCccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHHcC---------CCEEEEecchHHhCCCC-C---C
Confidence              369999999996431  12334567889999999999999987642         35999999976543211 1   2


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      ++++..+..+...|+.+|++.+.+++.++.++   +  ++++.++|+.+.++..
T Consensus       138 ~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g--~~~~ilrp~~v~G~~~  186 (337)
T 1r6d_A          138 SWTESSPLEPNSPYAASKAGSDLVARAYHRTY---G--LDVRITRCCNNYGPYQ  186 (337)
T ss_dssp             CBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CCEEEEEECEEECTTC
T ss_pred             CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH---C--CCEEEEEeeeeECCCC
Confidence            34455566677899999999999999988765   4  7888899999998864

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.85  E-value=6.4e-21  Score=165.80  Aligned_cols=181  Identities=20%  Similarity=0.165  Sum_probs=137.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHc--CCeEEEEEeccch-HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           30 LTAIVTGASSGIGTETARVLALR--GVHVIMAVRNMAA-GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~--G~~Vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      |++|||||+|+||++++++|+++  |++|++++|+... ..+..+   .. ...++.++.+|++|++++..+++      
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~~~Dl~d~~~~~~~~~------   74 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLE---AI-LGDRVELVVGDIADAELVDKLAA------   74 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTG---GG-CSSSEEEEECCTTCHHHHHHHHT------
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHh---hh-ccCCeEEEECCCCCHHHHHHHhh------
Confidence            68999999999999999999999  8999999997531 111111   11 13478899999999998888876      


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC------
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG------  180 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~------  180 (255)
                       .+|+|||+||....  ..+.+++.+.+++|+.++.++++++.+.          +++||++||...+......      
T Consensus        75 -~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~~~~----------~~~~v~~SS~~vyg~~~~~~~~~~~  141 (348)
T 1oc2_A           75 -KADAIVHYAAESHN--DNSLNDPSPFIHTNFIGTYTLLEAARKY----------DIRFHHVSTDEVYGDLPLREDLPGH  141 (348)
T ss_dssp             -TCSEEEECCSCCCH--HHHHHCCHHHHHHHTHHHHHHHHHHHHH----------TCEEEEEEEGGGGCCBCCGGGSTTT
T ss_pred             -cCCEEEECCcccCc--cchhhCHHHHHHHHHHHHHHHHHHHHHh----------CCeEEEecccceeCCCccccccccc
Confidence             36999999996431  1234566788999999999999998754          1399999997654321110      


Q ss_pred             --ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          181 --IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       181 --~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                        .+..++++..+..+...|+.+|++.+.+++.++.++   +  ++++.++||.+.++..
T Consensus       142 ~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g--i~~~ilrp~~v~G~~~  196 (348)
T 1oc2_A          142 GEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF---G--VKATISNCSNNYGPYQ  196 (348)
T ss_dssp             TCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECCEESTTC
T ss_pred             ccccCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh---C--CCEEEEeeceeeCCCC
Confidence              011345555566677899999999999999998776   4  8999999999999864

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.85  E-value=2.2e-20  Score=177.14  Aligned_cols=193  Identities=19%  Similarity=0.145  Sum_probs=137.6

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+.+++|++|||||+|+||++++++|+++|++|++++|+.....+..+.+.... ..++.++.+|++|.+++.+++++. 
T Consensus         6 ~~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-   83 (699)
T 1z45_A            6 QSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEY-   83 (699)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHS-
T ss_pred             ccccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhcc-CCceEEEEcCCCCHHHHHHHHHhC-
Confidence            355778999999999999999999999999999999998654433333333221 346889999999999999988864 


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                          ++|+|||+||.....  ...+...+.+++|+.++.++++++...         +.++||++||.+.+.........
T Consensus        84 ----~~D~Vih~A~~~~~~--~~~~~~~~~~~~Nv~gt~~ll~a~~~~---------~~~~iV~~SS~~vyg~~~~~~~~  148 (699)
T 1z45_A           84 ----KIDSVIHFAGLKAVG--ESTQIPLRYYHNNILGTVVLLELMQQY---------NVSKFVFSSSATVYGDATRFPNM  148 (699)
T ss_dssp             ----CCCEEEECCSCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHHHH---------TCCEEEEEEEGGGGCCGGGSTTC
T ss_pred             ----CCCEEEECCcccCcC--ccccCHHHHHHHHHHHHHHHHHHHHHc---------CCCEEEEECcHHHhCCCcccccc
Confidence                699999999964321  112344678999999999998776532         24599999997654321110111


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      .++.+..+..+...|+.+|++++.+++.++.+. ..+  +++..++|+.+..+
T Consensus       149 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~g--~~~~ilR~~~vyG~  198 (699)
T 1z45_A          149 IPIPEECPLGPTNPYGHTKYAIENILNDLYNSD-KKS--WKFAILRYFNPIGA  198 (699)
T ss_dssp             CSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS-TTS--CEEEEEEECEEECC
T ss_pred             CCccccCCCCCCChHHHHHHHHHHHHHHHHHhc-cCC--CcEEEEEeccccCC
Confidence            233444455566799999999999999987765 234  88888998887664

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=3e-21  Score=158.18  Aligned_cols=166  Identities=16%  Similarity=0.036  Sum_probs=126.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++|||||+|+||++++++|+++|++|++++|+.++....         ...+.++.+|++|.+++.++++       ++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~-------~~   68 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE---------NEHLKVKKADVSSLDEVCEVCK-------GA   68 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC---------CTTEEEECCCTTCHHHHHHHHT-------TC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc---------cCceEEEEecCCCHHHHHHHhc-------CC
Confidence            6899999999999999999999999999999997654211         2478999999999999988887       58


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+||....        ..+.+++|+.++.++++++.+.         +.+++|++||..++...+...     ..+
T Consensus        69 d~vi~~a~~~~~--------~~~~~~~n~~~~~~l~~~~~~~---------~~~~~v~~Ss~~~~~~~~~~~-----~~~  126 (227)
T 3dhn_A           69 DAVISAFNPGWN--------NPDIYDETIKVYLTIIDGVKKA---------GVNRFLMVGGAGSLFIAPGLR-----LMD  126 (227)
T ss_dssp             SEEEECCCC--------------CCSHHHHHHHHHHHHHHHT---------TCSEEEEECCSTTSEEETTEE-----GGG
T ss_pred             CEEEEeCcCCCC--------ChhHHHHHHHHHHHHHHHHHHh---------CCCEEEEeCChhhccCCCCCc-----ccc
Confidence            999999985311        1126888999999988887542         234999999988765433211     123


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .+..+...|+.+|++.+.+++.++.   ..+  ++++.++||.+.++..
T Consensus       127 ~~~~p~~~Y~~sK~~~e~~~~~~~~---~~~--~~~~ilrp~~v~g~~~  170 (227)
T 3dhn_A          127 SGEVPENILPGVKALGEFYLNFLMK---EKE--IDWVFFSPAADMRPGV  170 (227)
T ss_dssp             TTCSCGGGHHHHHHHHHHHHHTGGG---CCS--SEEEEEECCSEEESCC
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhh---ccC--ccEEEEeCCcccCCCc
Confidence            3445667899999998887776654   335  8999999999988754

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.84  E-value=1e-20  Score=166.14  Aligned_cols=178  Identities=11%  Similarity=0.053  Sum_probs=132.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCC-CHHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS-SLASVRKFASEY  102 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~si~~~~~~~  102 (255)
                      ..++++++|||||+|+||.+++++|+++ |++|++++|+.+......+       ..++.++.+|++ |.+++..+++  
T Consensus        20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-------~~~v~~~~~Dl~~d~~~~~~~~~--   90 (372)
T 3slg_A           20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVK-------HERMHFFEGDITINKEWVEYHVK--   90 (372)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGG-------STTEEEEECCTTTCHHHHHHHHH--
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhcc-------CCCeEEEeCccCCCHHHHHHHhc--
Confidence            3466789999999999999999999999 8999999998765433211       247899999999 9999998887  


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                           ++|+|||+|+...+.  ...++..+.+++|+.++.++++++...-          .++|++||... ++.....+
T Consensus        91 -----~~d~Vih~A~~~~~~--~~~~~~~~~~~~nv~~~~~ll~a~~~~~----------~~~v~~SS~~v-yg~~~~~~  152 (372)
T 3slg_A           91 -----KCDVILPLVAIATPA--TYVKQPLRVFELDFEANLPIVRSAVKYG----------KHLVFPSTSEV-YGMCADEQ  152 (372)
T ss_dssp             -----HCSEEEECBCCCCHH--HHHHCHHHHHHHHTTTTHHHHHHHHHHT----------CEEEEECCGGG-GBSCCCSS
T ss_pred             -----cCCEEEEcCccccHH--HHhhCHHHHHHHHHHHHHHHHHHHHHhC----------CcEEEeCcHHH-hCCCCCCC
Confidence                 489999999964321  1234566789999999999998886432          49999999554 33322222


Q ss_pred             CCCCCcccCC-------CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          183 FDKINDESAY-------NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       183 ~~~~~~~~~~-------~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      +.   +....       .+...|+.+|.+.+.+++.++.+    +  ++++.++|+.+.++..
T Consensus       153 ~~---e~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~----g--~~~~ilRp~~v~G~~~  206 (372)
T 3slg_A          153 FD---PDASALTYGPINKPRWIYACSKQLMDRVIWGYGME----G--LNFTLFRPFNWIGPGL  206 (372)
T ss_dssp             BC---TTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHTT----T--CEEEEEEECSEECSSC
T ss_pred             CC---ccccccccCCCCCCCCcHHHHHHHHHHHHHHHHHC----C--CCEEEEccccccCCCc
Confidence            22   22111       34558999999988888877654    5  8899999999988753

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.84  E-value=2.3e-21  Score=166.75  Aligned_cols=184  Identities=17%  Similarity=0.123  Sum_probs=121.8

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe-ccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVR-NMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r-~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ||++|||||+|+||++++++|+++|++|+++.| +.+.... .+.+..... ..++.++.+|++|.+++..+++      
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   73 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRD-VSFLTNLPGASEKLHFFNADLSNPDSFAAAIE------   73 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CC-CHHHHTSTTHHHHEEECCCCTTCGGGGHHHHT------
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhH-HHHHHhhhccCCceEEEecCCCCHHHHHHHHc------
Confidence            588999999999999999999999999999988 5432110 011111100 1257889999999998888876      


Q ss_pred             CCeeEEEEccCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDN-IELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~-~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                       .+|+|||+|+..    ..+.++ +.+.+++|+.|++++++++.+..        +.++||++||..++...+...  ..
T Consensus        74 -~~d~vih~A~~~----~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~--------~~~~iV~~SS~~~~~~~~~~~--~~  138 (322)
T 2p4h_X           74 -GCVGIFHTASPI----DFAVSEPEEIVTKRTVDGALGILKACVNSK--------TVKRFIYTSSGSAVSFNGKDK--DV  138 (322)
T ss_dssp             -TCSEEEECCCCC------------CHHHHHHHHHHHHHHHHHTTCS--------SCCEEEEEEEGGGTSCSSSCC--SE
T ss_pred             -CCCEEEEcCCcc----cCCCCChHHHHHHHHHHHHHHHHHHHHhcC--------CccEEEEeccHHHcccCCCCC--ee
Confidence             479999999742    122222 34589999999999999886431        246999999988665322110  01


Q ss_pred             CCcccCC--------CCc-cchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          186 INDESAY--------NSF-GAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       186 ~~~~~~~--------~~~-~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      +++....        .+. ..|+.+|++.+.+++.++.   ..|  ++++.++||.+.++...
T Consensus       139 ~~e~~~~~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~---~~g--i~~~~lrp~~v~g~~~~  196 (322)
T 2p4h_X          139 LDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGE---QNG--IDVVTLILPFIVGRFVC  196 (322)
T ss_dssp             ECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHH---HTT--CCEEEEEECEEESCCCS
T ss_pred             cCCccccchhhhcccCcccccHHHHHHHHHHHHHHHHH---hcC--CcEEEEcCCceECCCCC
Confidence            1111110        111 2699999876655544332   245  99999999999998643

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.84  E-value=2.6e-21  Score=157.99  Aligned_cols=156  Identities=15%  Similarity=0.180  Sum_probs=121.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-HHHHHHHHHHHhcCCCCe
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-LASVRKFASEYNSQGRPL  109 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~si~~~~~~~~~~~g~i  109 (255)
                      +++||||+|+||++++++|+++|++|++++|+.++....          .++.++++|++| ++++.++++       ++
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----------~~~~~~~~D~~d~~~~~~~~~~-------~~   64 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY----------NNVKAVHFDVDWTPEEMAKQLH-------GM   64 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC----------TTEEEEECCTTSCHHHHHTTTT-------TC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc----------CCceEEEecccCCHHHHHHHHc-------CC
Confidence            699999999999999999999999999999997653221          468999999999 888877765       58


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+||||||....          +.+++|+.++.++++++..         .+.++||++||..+....+.    .   + 
T Consensus        65 d~vi~~ag~~~~----------~~~~~n~~~~~~l~~a~~~---------~~~~~iv~~SS~~~~~~~~~----~---e-  117 (219)
T 3dqp_A           65 DAIINVSGSGGK----------SLLKVDLYGAVKLMQAAEK---------AEVKRFILLSTIFSLQPEKW----I---G-  117 (219)
T ss_dssp             SEEEECCCCTTS----------SCCCCCCHHHHHHHHHHHH---------TTCCEEEEECCTTTTCGGGC----C---S-
T ss_pred             CEEEECCcCCCC----------CcEeEeHHHHHHHHHHHHH---------hCCCEEEEECcccccCCCcc----c---c-
Confidence            999999997541          1577899999999888742         23459999999876542111    1   1 


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .+..+...|+.+|++.+.+++      ...+  ++++.|+||.+.++..
T Consensus       118 ~~~~~~~~Y~~sK~~~e~~~~------~~~~--i~~~ilrp~~v~g~~~  158 (219)
T 3dqp_A          118 AGFDALKDYYIAKHFADLYLT------KETN--LDYTIIQPGALTEEEA  158 (219)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHH------HSCC--CEEEEEEECSEECSCC
T ss_pred             cccccccHHHHHHHHHHHHHH------hccC--CcEEEEeCceEecCCC
Confidence            122236789999999888776      3455  9999999999998743

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.84  E-value=1.9e-20  Score=162.25  Aligned_cols=174  Identities=16%  Similarity=0.134  Sum_probs=123.3

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .++++++|||||+|+||++++++|+++|++|++++|+.....+.   +..   -.++.++.+|++|.+++.++++..   
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---l~~---~~~~~~~~~Dl~d~~~~~~~~~~~---   88 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREH---LKD---HPNLTFVEGSIADHALVNQLIGDL---   88 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGG---SCC---CTTEEEEECCTTCHHHHHHHHHHH---
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhh---Hhh---cCCceEEEEeCCCHHHHHHHHhcc---
Confidence            35678999999999999999999999999999999986432111   100   136889999999999999998863   


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                        ++|+||||||.....   +.+++.  +++|+.++.++++++.+.         +.++||++||...+...+..... +
T Consensus        89 --~~D~vih~A~~~~~~---~~~~~~--~~~N~~~~~~l~~a~~~~---------~~~~iV~~SS~~~~g~~~~~~~~-~  151 (333)
T 2q1w_A           89 --QPDAVVHTAASYKDP---DDWYND--TLTNCVGGSNVVQAAKKN---------NVGRFVYFQTALCYGVKPIQQPV-R  151 (333)
T ss_dssp             --CCSEEEECCCCCSCT---TCHHHH--HHHHTHHHHHHHHHHHHT---------TCSEEEEEEEGGGGCSCCCSSSB-C
T ss_pred             --CCcEEEECceecCCC---ccCChH--HHHHHHHHHHHHHHHHHh---------CCCEEEEECcHHHhCCCcccCCC-C
Confidence              699999999975432   334444  999999999999998752         24699999997654211100000 2


Q ss_pred             CCcccCCCCc-cchHHhHHHHHHHHHH-HHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          186 INDESAYNSF-GAYGQSKLANILHAKE-LAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       186 ~~~~~~~~~~-~~Y~~sKaa~~~l~~~-la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      +++..  .+. ..|+.+|++++.+++. ++      .  +  ..|.|+.+..+.
T Consensus       152 ~~E~~--~p~~~~Y~~sK~~~E~~~~~s~~------~--~--~ilR~~~v~gp~  193 (333)
T 2q1w_A          152 LDHPR--NPANSSYAISKSANEDYLEYSGL------D--F--VTFRLANVVGPR  193 (333)
T ss_dssp             TTSCC--CCTTCHHHHHHHHHHHHHHHHTC------C--E--EEEEESEEESTT
T ss_pred             cCCCC--CCCCCchHHHHHHHHHHHHhhhC------C--e--EEEeeceEECcC
Confidence            33332  344 7899999999998887 64      1  3  336777666554

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.84  E-value=1.6e-20  Score=160.72  Aligned_cols=174  Identities=15%  Similarity=0.112  Sum_probs=135.1

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHc--CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALR--GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +|++|||||+|+||++++++|+++  |++|++++|+.....     +..     ++.++.+|++|.+++.+++++.    
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~~-----~~~~~~~D~~d~~~~~~~~~~~----   67 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-----VVN-----SGPFEVVNALDFNQIEHLVEVH----   67 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-----HHH-----SSCEEECCTTCHHHHHHHHHHT----
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-----ccC-----CCceEEecCCCHHHHHHHHhhc----
Confidence            478999999999999999999999  899999999876521     111     3678999999999999998864    


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                       ++|+|||+|+....   ...+++.+.+++|+.++.++++++.+.         +.+++|++||...+.....   ...+
T Consensus        68 -~~d~vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~v~~SS~~~~~~~~~---~~~~  131 (312)
T 2yy7_A           68 -KITDIYLMAALLSA---TAEKNPAFAWDLNMNSLFHVLNLAKAK---------KIKKIFWPSSIAVFGPTTP---KENT  131 (312)
T ss_dssp             -TCCEEEECCCCCHH---HHHHCHHHHHHHHHHHHHHHHHHHHTT---------SCSEEECCEEGGGCCTTSC---SSSB
T ss_pred             -CCCEEEECCccCCC---chhhChHHHHHHHHHHHHHHHHHHHHc---------CCCEEEEeccHHHhCCCCC---CCCc
Confidence             69999999996432   123567788999999999999888631         2359999999776542211   1233


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      ++..+..+...|+.+|.+.+.+++.++.++   +  ++++.++|+.+..+.
T Consensus       132 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~--~~~~~lrp~~v~g~~  177 (312)
T 2yy7_A          132 PQYTIMEPSTVYGISKQAGERWCEYYHNIY---G--VDVRSIRYPGLISWS  177 (312)
T ss_dssp             CSSCBCCCCSHHHHHHHHHHHHHHHHHHHH---C--CEEECEEECEEECSS
T ss_pred             cccCcCCCCchhHHHHHHHHHHHHHHHHhc---C--CcEEEEeCCeEecCC
Confidence            344455567889999999999999887665   4  899999999998854

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.84  E-value=2.6e-21  Score=170.56  Aligned_cols=181  Identities=14%  Similarity=0.058  Sum_probs=132.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++++|||||+|+||++++++|+++| ++|++++|+.+...+..+      ...++.++.+|++|++++.++++    
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~------~~~~v~~~~~Dl~d~~~l~~~~~----   98 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP------DHPAVRFSETSITDDALLASLQD----   98 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC------CCTTEEEECSCTTCHHHHHHCCS----
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc------CCCceEEEECCCCCHHHHHHHhh----
Confidence            4678999999999999999999999999 999999998654221110      13468899999999988776654    


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                         ++|+|||+|+....  ..+.+++.+.+++|+.++.++++++.+.        ...++||++||...+.. ....   
T Consensus        99 ---~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~ll~a~~~~--------~~~~~~V~~SS~~vyg~-~~~~---  161 (377)
T 2q1s_A           99 ---EYDYVFHLATYHGN--QSSIHDPLADHENNTLTTLKLYERLKHF--------KRLKKVVYSAAGCSIAE-KTFD---  161 (377)
T ss_dssp             ---CCSEEEECCCCSCH--HHHHHCHHHHHHHHTHHHHHHHHHHTTC--------SSCCEEEEEEEC-------------
T ss_pred             ---CCCEEEECCCccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHHh--------CCCCeEEEeCCHHHcCC-CCCC---
Confidence               69999999996432  1234567889999999999999888421        02359999999764432 1111   


Q ss_pred             CCC--ccc---CC-CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          185 KIN--DES---AY-NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       185 ~~~--~~~---~~-~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      +++  +..   +. .+...|+.+|++.+.+++.++.++   +  ++++.++||.+.++..
T Consensus       162 ~~~~~E~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---g--i~~~ilRp~~v~G~~~  216 (377)
T 2q1s_A          162 DAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQH---Q--LPTVRARFQNVYGPGE  216 (377)
T ss_dssp             -----CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH---C--CCEEEEEECCEECTTC
T ss_pred             CcCcccccccccccCCCCchHHHHHHHHHHHHHHHHHh---C--CCEEEEeeccEECCCC
Confidence            122  222   33 456789999999999999988765   4  8888999999998864

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.83  E-value=3.8e-20  Score=161.74  Aligned_cols=180  Identities=13%  Similarity=0.069  Sum_probs=132.1

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+++++++|||||+|+||++++++|+++| ++|++++|+.....     .... .  .+. +.+|++|.++++.+++.  
T Consensus        42 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-----~~~~-~--~~~-~~~d~~~~~~~~~~~~~--  110 (357)
T 2x6t_A           42 SGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-----FVNL-V--DLN-IADYMDKEDFLIQIMAG--  110 (357)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG-----GGGT-T--TSC-CSEEEEHHHHHHHHHTT--
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch-----hhcc-c--Cce-EeeecCcHHHHHHHHhh--
Confidence            34678999999999999999999999999 89999999865421     1111 1  223 67899999888887764  


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ..++++|+|||+||....    +.+++.+.+++|+.++.++++++.+.        + . +||++||...+.. ..   .
T Consensus       111 ~~~~~~d~Vih~A~~~~~----~~~~~~~~~~~n~~~~~~ll~a~~~~--------~-~-r~V~~SS~~v~g~-~~---~  172 (357)
T 2x6t_A          111 EEFGDVEAIFHEGACSST----TEWDGKYMMDNNYQYSKELLHYCLER--------E-I-PFLYASSAATYGG-RT---S  172 (357)
T ss_dssp             CCCSSCCEEEECCSCCCT----TCCCHHHHHHHTHHHHHHHHHHHHHH--------T-C-CEEEEEEGGGGCS-CS---S
T ss_pred             cccCCCCEEEECCcccCC----ccCCHHHHHHHHHHHHHHHHHHHHHc--------C-C-eEEEEcchHHhCC-CC---C
Confidence            235689999999997543    33457788999999999999998752        1 3 9999999875432 11   1


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .++++..+..+...|+.+|++.+.+++.++.++   +  ++++.|+|+.+.++..
T Consensus       173 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g--~~~~ilRp~~v~Gp~~  222 (357)
T 2x6t_A          173 DFIESREYEKPLNVFGYSKFLFDEYVRQILPEA---N--SQIVGFRYFNVYGPRE  222 (357)
T ss_dssp             CCCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC---S--SCEEEEEECEEESSSC
T ss_pred             CCcCCcCCCCCCChhHHHHHHHHHHHHHHHHHc---C--CCEEEEecCeEECCCC
Confidence            234555566667799999999999888876543   4  8888899999998753

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.83  E-value=4.4e-20  Score=158.47  Aligned_cols=164  Identities=14%  Similarity=0.113  Sum_probs=99.3

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++|||||+|+||++++++|+++|++|++++|+.+.            +  +  ++.+|++|.+++.++++..     +
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~------------~--~--~~~~Dl~d~~~~~~~~~~~-----~   60 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR------------P--K--FEQVNLLDSNAVHHIIHDF-----Q   60 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC----------------------------------CHHHHHHH-----C
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC------------C--C--eEEecCCCHHHHHHHHHhh-----C
Confidence            5889999999999999999999999999999987543            1  1  6788999999999998875     6


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      +|+||||||....  ..+.+++.+.+++|+.++.++++++.+.          ++++|++||...+..  .   ..++++
T Consensus        61 ~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~a~~~~----------~~~~v~~SS~~v~~~--~---~~~~~E  123 (315)
T 2ydy_A           61 PHVIVHCAAERRP--DVVENQPDAASQLNVDASGNLAKEAAAV----------GAFLIYISSDYVFDG--T---NPPYRE  123 (315)
T ss_dssp             CSEEEECC---------------------CHHHHHHHHHHHHH----------TCEEEEEEEGGGSCS--S---SCSBCT
T ss_pred             CCEEEECCcccCh--hhhhcCHHHHHHHHHHHHHHHHHHHHHc----------CCeEEEEchHHHcCC--C---CCCCCC
Confidence            8999999997542  2345677889999999999999998752          249999999876542  1   123445


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceec
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVT  235 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t  235 (255)
                      ..+..+...|+.+|++++.+++.++.++    ..+|++.|. |...+
T Consensus       124 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~lR~~~v~-G~~~~  165 (315)
T 2ydy_A          124 EDIPAPLNLYGKTKLDGEKAVLENNLGA----AVLRIPILY-GEVEK  165 (315)
T ss_dssp             TSCCCCCSHHHHHHHHHHHHHHHHCTTC----EEEEECSEE-CSCSS
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHhCCCe----EEEeeeeee-CCCCc
Confidence            5556667899999999999988874322    125555555 44433

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.82  E-value=1.3e-19  Score=155.60  Aligned_cols=167  Identities=21%  Similarity=0.264  Sum_probs=128.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHc--CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           31 TAIVTGASSGIGTETARVLALR--GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++|||||+|+||++++++|+++  |++|++++|+.+...             .+.++.+|++|.+++.+++++.     +
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-------------~~~~~~~D~~d~~~~~~~~~~~-----~   62 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG-------------GIKFITLDVSNRDEIDRAVEKY-----S   62 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT-------------TCCEEECCTTCHHHHHHHHHHT-----T
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc-------------CceEEEecCCCHHHHHHHHhhc-----C
Confidence            4899999999999999999999  789999998765421             3568899999999999988863     6


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      +|+|||+|+....   ...+++.+.+++|+.++.++++++.+.         +.+++|++||...+.....   ..+..+
T Consensus        63 ~d~vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~a~~~~---------~~~~~v~~SS~~~~~~~~~---~~~~~e  127 (317)
T 3ajr_A           63 IDAIFHLAGILSA---KGEKDPALAYKVNMNGTYNILEAAKQH---------RVEKVVIPSTIGVFGPETP---KNKVPS  127 (317)
T ss_dssp             CCEEEECCCCCHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT---------TCCEEEEEEEGGGCCTTSC---SSSBCS
T ss_pred             CcEEEECCcccCC---ccccChHHHhhhhhHHHHHHHHHHHHc---------CCCEEEEecCHHHhCCCCC---CCCccc
Confidence            9999999996432   123567788999999999999987642         2459999999876542211   112334


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceec
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVT  235 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t  235 (255)
                      +.+..+...|+.+|++.+.+++.++.+.   +  ++++.+.|+.+..
T Consensus       128 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~--~~~~~lR~~~~~g  169 (317)
T 3ajr_A          128 ITITRPRTMFGVTKIAAELLGQYYYEKF---G--LDVRSLRYPGIIS  169 (317)
T ss_dssp             SSCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECEEEC
T ss_pred             cccCCCCchHHHHHHHHHHHHHHHHHhc---C--CeEEEEecCcEec
Confidence            4455567899999999999998887654   4  8888898665554

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.82  E-value=2.3e-19  Score=144.35  Aligned_cols=152  Identities=16%  Similarity=0.098  Sum_probs=115.1

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +++++||||+|+||++++++|+++|++|++++|+.++....        ...++.++.+|++|++++.++++       .
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~-------~   67 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQAADVDKTVA-------G   67 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSHHHHHHHHT-------T
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc--------cCCceEEEEecCCCHHHHHHHHc-------C
Confidence            47899999999999999999999999999999987653211        03468899999999999888876       4


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      +|++||++|.... .  ++      .++|+.++.++++++.+.         +.+++|++||...+...+.         
T Consensus        68 ~d~vi~~a~~~~~-~--~~------~~~n~~~~~~~~~~~~~~---------~~~~~v~~Ss~~~~~~~~~---------  120 (206)
T 1hdo_A           68 QDAVIVLLGTRND-L--SP------TTVMSEGARNIVAAMKAH---------GVDKVVACTSAFLLWDPTK---------  120 (206)
T ss_dssp             CSEEEECCCCTTC-C--SC------CCHHHHHHHHHHHHHHHH---------TCCEEEEECCGGGTSCTTC---------
T ss_pred             CCEEEECccCCCC-C--Cc------cchHHHHHHHHHHHHHHh---------CCCeEEEEeeeeeccCccc---------
Confidence            7999999996543 1  11      137888888888877542         2359999999865431110         


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCce
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSI  233 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v  233 (255)
                        ...+...|+.+|++++.+++       ..+  ++++.|+||.+
T Consensus       121 --~~~~~~~y~~~K~~~e~~~~-------~~~--i~~~~lrp~~~  154 (206)
T 1hdo_A          121 --VPPRLQAVTDDHIRMHKVLR-------ESG--LKYVAVMPPHI  154 (206)
T ss_dssp             --SCGGGHHHHHHHHHHHHHHH-------HTC--SEEEEECCSEE
T ss_pred             --ccccchhHHHHHHHHHHHHH-------hCC--CCEEEEeCCcc
Confidence              00145789999999888764       245  89999999998

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.82  E-value=1.1e-19  Score=155.75  Aligned_cols=168  Identities=16%  Similarity=0.100  Sum_probs=128.9

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++++|||||+|+||++++++|+++|++|++++|+.....  .+         ++.++.+|++ .+++.++++       +
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~---------~~~~~~~Dl~-~~~~~~~~~-------~   62 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA--IN---------DYEYRVSDYT-LEDLINQLN-------D   62 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------------CCEEEECCCC-HHHHHHHTT-------T
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc--CC---------ceEEEEcccc-HHHHHHhhc-------C
Confidence            378999999999999999999999999999999943321  11         5789999999 888887776       6


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      +|+|||+|+.....      ++.+.+++|+.++.++++++...         +..++|++||...+. ....   .++++
T Consensus        63 ~d~Vih~a~~~~~~------~~~~~~~~n~~~~~~ll~a~~~~---------~~~r~v~~SS~~vyg-~~~~---~~~~E  123 (311)
T 3m2p_A           63 VDAVVHLAATRGSQ------GKISEFHDNEILTQNLYDACYEN---------NISNIVYASTISAYS-DETS---LPWNE  123 (311)
T ss_dssp             CSEEEECCCCCCSS------SCGGGTHHHHHHHHHHHHHHHHT---------TCCEEEEEEEGGGCC-CGGG---CSBCT
T ss_pred             CCEEEEccccCCCC------ChHHHHHHHHHHHHHHHHHHHHc---------CCCEEEEEccHHHhC-CCCC---CCCCC
Confidence            89999999975432      33456889999999999888532         234899999965433 2222   23455


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      ..+..+...|+.+|.+.+.+++.++.+   .+  ++++.++|+.+.++...
T Consensus       124 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g--~~~~ilRp~~v~G~~~~  169 (311)
T 3m2p_A          124 KELPLPDLMYGVSKLACEHIGNIYSRK---KG--LCIKNLRFAHLYGFNEK  169 (311)
T ss_dssp             TSCCCCSSHHHHHHHHHHHHHHHHHHH---SC--CEEEEEEECEEECSCC-
T ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHHH---cC--CCEEEEeeCceeCcCCC
Confidence            556667789999999999988888764   35  88899999999987543

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.82  E-value=6e-20  Score=166.92  Aligned_cols=181  Identities=20%  Similarity=0.242  Sum_probs=132.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHc---CCeEEEEEeccchHHHHHHHHHhhCC--------------CCceEEEE
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALR---GVHVIMAVRNMAAGKDVREAIVKEIP--------------SAKVDAME   86 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~---G~~Vi~~~r~~~~~~~~~~~~~~~~~--------------~~~~~~~~   86 (255)
                      ....++|+||||||+|+||.+++++|++.   |++|++++|+.+.. ...+++.+...              ..++.++.
T Consensus        68 ~~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~  146 (478)
T 4dqv_A           68 GPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDE-DARRRLEKTFDSGDPELLRHFKELAADRLEVVA  146 (478)
T ss_dssp             CCCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHH-HHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEE
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcH-HHHHHHHHHHHhcchhhhhhhhhhccCceEEEE
Confidence            34567899999999999999999999999   89999999987653 22333332221              25799999


Q ss_pred             eCCC------CHHHHHHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 025275           87 LDVS------SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSS  160 (255)
Q Consensus        87 ~Dl~------~~~si~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~  160 (255)
                      +|++      |.+++..+++       ++|+|||||+....      +.+.+.+++|+.++.++++++.+.         
T Consensus       147 ~Dl~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~~------~~~~~~~~~Nv~gt~~ll~aa~~~---------  204 (478)
T 4dqv_A          147 GDKSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVNA------FPYHELFGPNVAGTAELIRIALTT---------  204 (478)
T ss_dssp             CCTTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCSB------SSCCEEHHHHHHHHHHHHHHHTSS---------
T ss_pred             eECCCcccCCCHHHHHHHHc-------CCCEEEECccccCC------cCHHHHHHHHHHHHHHHHHHHHhC---------
Confidence            9999      6667777776       48999999997543      233457899999999999887531         


Q ss_pred             CCCeEEEecCCccccccccCccCCCCCcccCCC-----------CccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEee
Q 025275          161 REGRIVNVSSEAHRFAYSEGIRFDKINDESAYN-----------SFGAYGQSKLANILHAKELAKHLKEDGVNITANSLH  229 (255)
Q Consensus       161 ~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~  229 (255)
                      +..++|++||...+. .....   .+.++.+..           ....|+.+|.+.+.+++.++.+.   |  ++++.++
T Consensus       205 ~~~~~V~iSS~~v~~-~~~~~---~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---g--i~~~ivR  275 (478)
T 4dqv_A          205 KLKPFTYVSTADVGA-AIEPS---AFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLC---A--LPVAVFR  275 (478)
T ss_dssp             SCCCEEEEEEGGGGT-TSCTT---TCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHH---C--CCEEEEE
T ss_pred             CCCeEEEEeehhhcC-ccCCC---CcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHh---C--CCeEEEE
Confidence            235899999975432 21111   122222211           12459999999999999887655   4  8888999


Q ss_pred             CCceecC
Q 025275          230 PGSIVTN  236 (255)
Q Consensus       230 PG~v~t~  236 (255)
                      ||.|..+
T Consensus       276 pg~v~G~  282 (478)
T 4dqv_A          276 CGMILAD  282 (478)
T ss_dssp             ECEEECC
T ss_pred             CceeeCC
Confidence            9999876

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.82  E-value=1.8e-19  Score=156.18  Aligned_cols=174  Identities=12%  Similarity=0.033  Sum_probs=128.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-HHHHHHHHHHHhcCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-LASVRKFASEYNSQGR  107 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~si~~~~~~~~~~~g  107 (255)
                      +++|||||+|+||++++++|+++ |++|++++|+.+......       ...++.++.+|++| .+.+..+++       
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~-------   66 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------NHPHFHFVEGDISIHSEWIEYHVK-------   66 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-------TCTTEEEEECCTTTCSHHHHHHHH-------
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh-------cCCCeEEEeccccCcHHHHHhhcc-------
Confidence            47999999999999999999998 899999999876543211       13468899999998 456777776       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+|||+||...+.  ...+++.+.+++|+.++.++++++.+.         + +++|++||...+.. ....+   ++
T Consensus        67 ~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~-~~~v~~SS~~v~g~-~~~~~---~~  130 (345)
T 2bll_A           67 KCDVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCVKY---------R-KRIIFPSTSEVYGM-CSDKY---FD  130 (345)
T ss_dssp             HCSEEEECBCCCCHH--HHHHSHHHHHHHHTHHHHHHHHHHHHT---------T-CEEEEECCGGGGBT-CCCSS---BC
T ss_pred             CCCEEEEcccccCcc--chhcCHHHHHHHHHHHHHHHHHHHHHh---------C-CeEEEEecHHHcCC-CCCCC---cC
Confidence            479999999964321  123456778999999999999887531         1 59999999765432 21111   22


Q ss_pred             cccCC-------CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          188 DESAY-------NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       188 ~~~~~-------~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      +..+.       .+...|+.+|.+.+.+++.++.+.   +  ++++.++||.+.++..
T Consensus       131 e~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~--~~~~ilrp~~v~G~~~  183 (345)
T 2bll_A          131 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE---G--LQFTLFRPFNWMGPRL  183 (345)
T ss_dssp             TTTCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH---C--CCEEEEEECSEECSSC
T ss_pred             CcccccccCcccCcccccHHHHHHHHHHHHHHHHhc---C--CCEEEEcCCcccCCCc
Confidence            22211       234489999999999999988765   4  8888899999988764

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.81  E-value=2.3e-19  Score=148.23  Aligned_cols=157  Identities=15%  Similarity=0.133  Sum_probs=106.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +..|++|||||+|+||++++++|+++| ++|++++|+.+++.+.        ...++.++++|++|+++++++++     
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~--------~~~~~~~~~~Dl~d~~~~~~~~~-----   87 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP--------YPTNSQIIMGDVLNHAALKQAMQ-----   87 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS--------CCTTEEEEECCTTCHHHHHHHHT-----
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc--------ccCCcEEEEecCCCHHHHHHHhc-----
Confidence            445899999999999999999999999 8999999998754321        13478999999999999998887     


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                        .+|+||||+|..      ..              ...++.+++.+++     .+.++||++||..++...+..  +..
T Consensus        88 --~~D~vv~~a~~~------~~--------------~~~~~~~~~~~~~-----~~~~~iV~iSS~~~~~~~~~~--~~~  138 (236)
T 3qvo_A           88 --GQDIVYANLTGE------DL--------------DIQANSVIAAMKA-----CDVKRLIFVLSLGIYDEVPGK--FVE  138 (236)
T ss_dssp             --TCSEEEEECCST------TH--------------HHHHHHHHHHHHH-----TTCCEEEEECCCCC------------
T ss_pred             --CCCEEEEcCCCC------ch--------------hHHHHHHHHHHHH-----cCCCEEEEEecceecCCCCcc--ccc
Confidence              579999999851      11              1235677788876     446799999998765432210  001


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .+......+...|..++           ..+...+  |+++.|+||++.++..
T Consensus       139 ~~~~~~~~~~~~~~~~~-----------~~l~~~g--i~~~~vrPg~i~~~~~  178 (236)
T 3qvo_A          139 WNNAVIGEPLKPFRRAA-----------DAIEASG--LEYTILRPAWLTDEDI  178 (236)
T ss_dssp             ------CGGGHHHHHHH-----------HHHHTSC--SEEEEEEECEEECCSC
T ss_pred             chhhcccchHHHHHHHH-----------HHHHHCC--CCEEEEeCCcccCCCC
Confidence            11111112223344333           2234556  9999999999998754

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.81  E-value=8.7e-21  Score=153.94  Aligned_cols=151  Identities=15%  Similarity=0.048  Sum_probs=119.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++++||||+|+||++++++|+++|+  +|++++|+.+.          .  ..++.++.+|++|++++.+++      
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~----------~--~~~~~~~~~D~~~~~~~~~~~------   65 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------E--HPRLDNPVGPLAELLPQLDGS------   65 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------C--CTTEECCBSCHHHHGGGCCSC------
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc----------c--CCCceEEeccccCHHHHHHhh------
Confidence            468999999999999999999999998  99999998764          1  236788899998876554433      


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                         +|+||||||....    ..+++.+.+++|+.++.++++++.+.         +.+++|++||.....          
T Consensus        66 ---~d~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~v~~Ss~~~~~----------  119 (215)
T 2a35_A           66 ---IDTAFCCLGTTIK----EAGSEEAFRAVDFDLPLAVGKRALEM---------GARHYLVVSALGADA----------  119 (215)
T ss_dssp             ---CSEEEECCCCCHH----HHSSHHHHHHHHTHHHHHHHHHHHHT---------TCCEEEEECCTTCCT----------
T ss_pred             ---hcEEEECeeeccc----cCCCHHHHHHhhHHHHHHHHHHHHHc---------CCCEEEEECCcccCC----------
Confidence               8999999996432    23467788999999999999887542         235899999977542          


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEE-EEEeeCCceecCcc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNIT-ANSLHPGSIVTNLF  238 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~-vn~v~PG~v~t~~~  238 (255)
                             .+...|+.+|++++.+++.+       +  ++ ++.|+||.+.++..
T Consensus       120 -------~~~~~y~~sK~~~e~~~~~~-------~--~~~~~~vrp~~v~g~~~  157 (215)
T 2a35_A          120 -------KSSIFYNRVKGELEQALQEQ-------G--WPQLTIARPSLLFGPRE  157 (215)
T ss_dssp             -------TCSSHHHHHHHHHHHHHTTS-------C--CSEEEEEECCSEESTTS
T ss_pred             -------CCccHHHHHHHHHHHHHHHc-------C--CCeEEEEeCceeeCCCC
Confidence                   13458999999988877642       5  87 99999999998753

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.80  E-value=3e-19  Score=155.15  Aligned_cols=180  Identities=14%  Similarity=0.073  Sum_probs=126.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ..++++++|||||+|+||++++++|+++|++|++++|+........+.+   ....++.++.+|+.+..           
T Consensus        23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~-----------   88 (343)
T 2b69_A           23 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW---IGHENFELINHDVVEPL-----------   88 (343)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG---TTCTTEEEEECCTTSCC-----------
T ss_pred             cccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhh---ccCCceEEEeCccCChh-----------
Confidence            3357789999999999999999999999999999999754322111111   11346889999998752           


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                       +.++|+|||+|+......  ..+++.+.+++|+.++.++++++.+.          +.++|++||...+. .....+.+
T Consensus        89 -~~~~d~vih~A~~~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~----------~~~~v~~SS~~v~g-~~~~~~~~  154 (343)
T 2b69_A           89 -YIEVDQIYHLASPASPPN--YMYNPIKTLKTNTIGTLNMLGLAKRV----------GARLLLASTSEVYG-DPEVHPQS  154 (343)
T ss_dssp             -CCCCSEEEECCSCCSHHH--HTTCHHHHHHHHHHHHHHHHHHHHHH----------TCEEEEEEEGGGGB-SCSSSSBC
T ss_pred             -hcCCCEEEECccccCchh--hhhCHHHHHHHHHHHHHHHHHHHHHh----------CCcEEEECcHHHhC-CCCCCCCc
Confidence             357999999999643210  12345678999999999999988642          23999999965442 22211111


Q ss_pred             CCC--cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          185 KIN--DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       185 ~~~--~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      +-+  ...+..+...|+.+|++.+.+++.++.+.   +  ++++.++||.+.++.
T Consensus       155 E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~ilrp~~v~G~~  204 (343)
T 2b69_A          155 EDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE---G--VEVRVARIFNTFGPR  204 (343)
T ss_dssp             TTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH---C--CCEEEEEECCEECTT
T ss_pred             ccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh---C--CcEEEEEEcceeCcC
Confidence            110  11344456789999999999999887664   4  888889999999875

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.80  E-value=7.2e-19  Score=151.14  Aligned_cols=165  Identities=13%  Similarity=0.121  Sum_probs=125.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +++++|||||+|+||++++++|+++|++|++++|+.                      .+|++|.+++..++++.     
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~----------------------~~D~~d~~~~~~~~~~~-----   54 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASE-----   54 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHH-----
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc----------------------cCCccCHHHHHHHHHhc-----
Confidence            357899999999999999999999999999887752                      26999999999998875     


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+|||+|+..... ....+++.+.+++|+.++.++++++.+.         +..++|++||...+.. ...   .+++
T Consensus        55 ~~d~vih~a~~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~v~~SS~~vyg~-~~~---~~~~  120 (321)
T 1e6u_A           55 RIDQVYLAAAKVGGI-VANNTYPADFIYQNMMIESNIIHAAHQN---------DVNKLLFLGSSCIYPK-LAK---QPMA  120 (321)
T ss_dssp             CCSEEEECCCCCCCH-HHHHHCHHHHHHHHHHHHHHHHHHHHHT---------TCCEEEEECCGGGSCT-TCC---SSBC
T ss_pred             CCCEEEEcCeecCCc-chhhhCHHHHHHHHHHHHHHHHHHHHHh---------CCCeEEEEccHHHcCC-CCC---CCcC
Confidence            699999999964311 1234456788999999999999888642         1349999999765432 111   1223


Q ss_pred             ccc----CCCC-ccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          188 DES----AYNS-FGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       188 ~~~----~~~~-~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      +..    +..+ ...|+.+|.+.+.+++.++.+.   +  ++++.++|+.+.++..
T Consensus       121 E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~ilrp~~v~G~~~  171 (321)
T 1e6u_A          121 ESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY---G--RDYRSVMPTNLYGPHD  171 (321)
T ss_dssp             GGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECEEESTTC
T ss_pred             ccccccCCCCCCCCccHHHHHHHHHHHHHHHHHh---C--CCEEEEEeCCcCCcCC
Confidence            332    2223 3589999999999999888665   4  8899999999998754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.80  E-value=6.3e-19  Score=143.88  Aligned_cols=163  Identities=13%  Similarity=0.031  Sum_probs=113.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++|||||+|+||++++++|+++|++|++++|+.+++...    .    ...+.++.+|++|.++  ..+       +++|
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----~----~~~~~~~~~D~~d~~~--~~~-------~~~d   64 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR----L----GATVATLVKEPLVLTE--ADL-------DSVD   64 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----T----CTTSEEEECCGGGCCH--HHH-------TTCS
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc----c----CCCceEEecccccccH--hhc-------ccCC
Confidence            599999999999999999999999999999997654322    1    3468999999999887  222       3689


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES  190 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~  190 (255)
                      +||||||......         ...+|+.++.++++++    ++     .+ +++|++||..++...+...+ ...++..
T Consensus        65 ~vi~~ag~~~~~~---------~~~~n~~~~~~l~~a~----~~-----~~-~~~v~~SS~~~~~~~~~~~~-~~~~~~~  124 (224)
T 3h2s_A           65 AVVDALSVPWGSG---------RGYLHLDFATHLVSLL----RN-----SD-TLAVFILGSASLAMPGADHP-MILDFPE  124 (224)
T ss_dssp             EEEECCCCCTTSS---------CTHHHHHHHHHHHHTC----TT-----CC-CEEEEECCGGGSBCTTCSSC-GGGGCCG
T ss_pred             EEEECCccCCCcc---------hhhHHHHHHHHHHHHH----HH-----cC-CcEEEEecceeeccCCCCcc-ccccCCC
Confidence            9999999752111         1345777766655544    33     23 79999999877664332110 1111111


Q ss_pred             CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          191 AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       191 ~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      ...+...|+.+|++.+.+    .......+  ++++.|+||.+.++
T Consensus       125 ~~~~~~~y~~sK~~~e~~----~~~~~~~~--i~~~ivrp~~v~g~  164 (224)
T 3h2s_A          125 SAASQPWYDGALYQYYEY----QFLQMNAN--VNWIGISPSEAFPS  164 (224)
T ss_dssp             GGGGSTTHHHHHHHHHHH----HHHTTCTT--SCEEEEEECSBCCC
T ss_pred             CCccchhhHHHHHHHHHH----HHHHhcCC--CcEEEEcCccccCC
Confidence            222357899999887743    22223455  88999999999987

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.79  E-value=9.1e-19  Score=148.64  Aligned_cols=155  Identities=23%  Similarity=0.290  Sum_probs=119.9

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      -+++|||||+|+||++++++|+++|++|++++|+                       .+|++|.+++.++++++     +
T Consensus        12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~Dl~d~~~~~~~~~~~-----~   63 (292)
T 1vl0_A           12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ-----------------------DLDITNVLAVNKFFNEK-----K   63 (292)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT-----------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred             cceEEEECCCChHHHHHHHHHHhCCCeEEeccCc-----------------------cCCCCCHHHHHHHHHhc-----C
Confidence            4789999999999999999999999999999986                       26999999999998876     6


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      +|+|||+||....  ..+.+++.+.+++|+.++.++++++.+.          +.+||++||...+... .   ..++++
T Consensus        64 ~d~vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~~----------~~~iv~~SS~~v~~~~-~---~~~~~E  127 (292)
T 1vl0_A           64 PNVVINCAAHTAV--DKCEEQYDLAYKINAIGPKNLAAAAYSV----------GAEIVQISTDYVFDGE-A---KEPITE  127 (292)
T ss_dssp             CSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHH----------TCEEEEEEEGGGSCSC-C---SSCBCT
T ss_pred             CCEEEECCccCCH--HHHhcCHHHHHHHHHHHHHHHHHHHHHc----------CCeEEEechHHeECCC-C---CCCCCC
Confidence            9999999996432  1234677889999999999999998652          1399999998654321 1   123445


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      ..+..+...|+.+|++.+.+++.++.    +     +..|+|+.+.++
T Consensus       128 ~~~~~~~~~Y~~sK~~~E~~~~~~~~----~-----~~~lR~~~v~G~  166 (292)
T 1vl0_A          128 FDEVNPQSAYGKTKLEGENFVKALNP----K-----YYIVRTAWLYGD  166 (292)
T ss_dssp             TSCCCCCSHHHHHHHHHHHHHHHHCS----S-----EEEEEECSEESS
T ss_pred             CCCCCCccHHHHHHHHHHHHHHhhCC----C-----eEEEeeeeeeCC
Confidence            55555677899999999988877642    1     344677777654

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.79  E-value=1.2e-18  Score=164.17  Aligned_cols=177  Identities=12%  Similarity=0.039  Sum_probs=131.8

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHH-HHHHHHHHhc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLAS-VRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s-i~~~~~~~~~  104 (255)
                      ++++++|||||+|+||.+++++|+++ |++|++++|+.+.....       ....++.++.+|++|.++ +..+++    
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~-------~~~~~v~~v~~Dl~d~~~~~~~~~~----  381 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF-------LNHPHFHFVEGDISIHSEWIEYHVK----  381 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGG-------TTCTTEEEEECCTTTCHHHHHHHHH----
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhh-------ccCCceEEEECCCCCcHHHHHHhhc----
Confidence            46789999999999999999999998 89999999987654221       113468899999999765 666665    


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                         ++|+|||+||...+.  ...+++.+.+++|+.++.++++++.+.         + +++|++||...+.. ....   
T Consensus       382 ---~~D~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~---------~-~r~V~~SS~~vyg~-~~~~---  442 (660)
T 1z7e_A          382 ---KCDVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCVKY---------R-KRIIFPSTSEVYGM-CSDK---  442 (660)
T ss_dssp             ---HCSEEEECCCCCCTH--HHHHSHHHHHHHHTHHHHHHHHHHHHT---------T-CEEEEECCGGGGBT-CCSS---
T ss_pred             ---CCCEEEECceecCcc--ccccCHHHHHHhhhHHHHHHHHHHHHh---------C-CEEEEEecHHHcCC-CCCc---
Confidence               489999999964321  123466788999999999999888642         1 59999999765432 2111   


Q ss_pred             CCCcccCC-------CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          185 KINDESAY-------NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       185 ~~~~~~~~-------~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      +++++.+.       .+...|+.+|.+.+.+++.++.+.   +  ++++.++||.+.++..
T Consensus       443 ~~~E~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~~---g--i~~~ilRpg~v~Gp~~  498 (660)
T 1z7e_A          443 YFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE---G--LQFTLFRPFNWMGPRL  498 (660)
T ss_dssp             SBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHHHH---C--CCEEEEEECSEESTTS
T ss_pred             ccCCCccccccCcccCCCCCcHHHHHHHHHHHHHHHHHc---C--CCEEEECCCcccCCCc
Confidence            12222211       234579999999999999887765   4  8889999999998764

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.78  E-value=7.5e-19  Score=150.05  Aligned_cols=171  Identities=15%  Similarity=0.070  Sum_probs=124.1

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +.++++++|||||+|+||++++++|+++|+      +....             ...+.++.+|++|.+++..+++..  
T Consensus         2 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~~-------------~~~~~~~~~D~~d~~~~~~~~~~~--   60 (319)
T 4b8w_A            2 LYFQSMRILVTGGSGLVGKAIQKVVADGAG------LPGED-------------WVFVSSKDADLTDTAQTRALFEKV--   60 (319)
T ss_dssp             CCCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTCE-------------EEECCTTTCCTTSHHHHHHHHHHS--
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhcCC------ccccc-------------ccccCceecccCCHHHHHHHHhhc--
Confidence            346779999999999999999999999997      11100             123445578999999999999864  


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                         ++|+|||+|+..... ..+.+++.+.+++|+.++.++++++.+.-         ..++|++||...+ +.....   
T Consensus        61 ---~~d~Vih~A~~~~~~-~~~~~~~~~~~~~nv~gt~~ll~a~~~~~---------~~~~v~~SS~~vy-g~~~~~---  123 (319)
T 4b8w_A           61 ---QPTHVIHLAAMVGGL-FRNIKYNLDFWRKNVHMNDNVLHSAFEVG---------ARKVVSCLSTCIF-PDKTTY---  123 (319)
T ss_dssp             ---CCSEEEECCCCCCCH-HHHTTCHHHHHHHHHHHHHHHHHHHHHTT---------CSEEEEECCGGGS-CSSCCS---
T ss_pred             ---CCCEEEECceecccc-cccccCHHHHHHHHHHHHHHHHHHHHHcC---------CCeEEEEcchhhc-CCCCCC---
Confidence               599999999974321 12334566789999999999998875332         3489999998644 322222   


Q ss_pred             CCCccc----CC-CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          185 KINDES----AY-NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       185 ~~~~~~----~~-~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      ++++..    +. +....|+.+|.+.+.+++.++.+.   +  ++++.++|+.+..+..
T Consensus       124 ~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~ilRp~~v~Gp~~  177 (319)
T 4b8w_A          124 PIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQY---G--CTFTAVIPTNVFGPHD  177 (319)
T ss_dssp             SBCGGGGGBSCCCSSSHHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECEEECTTC
T ss_pred             CccccccccCCCCCCcchHHHHHHHHHHHHHHHHHhh---C--CCEEEEeeccccCCCC
Confidence            233332    22 223369999999999998887765   4  8888899999988753

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.78  E-value=9.9e-19  Score=149.35  Aligned_cols=174  Identities=13%  Similarity=0.082  Sum_probs=128.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           31 TAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ++|||||+|+||++++++|+++| ++|++++|+.....  .+.+.    +  +. +.+|++|.++++.+++...  ++++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~----~--~~-~~~d~~~~~~~~~~~~~~~--~~~~   69 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV----D--LN-IADYMDKEDFLIQIMAGEE--FGDV   69 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH----T--SC-CSEEEEHHHHHHHHHTTCC--CSSC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC----c--ce-eccccccHHHHHHHHhccc--cCCC
Confidence            48999999999999999999999 89999999865421  11121    1  22 6789999888877765211  2369


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+|+....    +.+++.+.+++|+.++.++++++.+.         +. ++|++||...+.. ...   .++++.
T Consensus        70 d~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~a~~~~---------~~-~~v~~SS~~v~g~-~~~---~~~~E~  131 (310)
T 1eq2_A           70 EAIFHEGACSST----TEWDGKYMMDNNYQYSKELLHYCLER---------EI-PFLYASSAATYGG-RTS---DFIESR  131 (310)
T ss_dssp             CEEEECCSCCCT----TCCCHHHHHHHTHHHHHHHHHHHHHH---------TC-CEEEEEEGGGGTT-CCS---CBCSSG
T ss_pred             cEEEECcccccC----cccCHHHHHHHHHHHHHHHHHHHHHc---------CC-eEEEEeeHHHhCC-CCC---CCCCCC
Confidence            999999997543    33456788999999999999988642         13 9999999865432 211   134455


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .+..+...|+.+|.+.+.+++.++.+   .+  ++++.++||.+.++..
T Consensus       132 ~~~~p~~~Y~~sK~~~e~~~~~~~~~---~g--~~~~~lrp~~v~G~~~  175 (310)
T 1eq2_A          132 EYEKPLNVYGYSKFLFDEYVRQILPE---AN--SQIVGFRYFNVYGPRE  175 (310)
T ss_dssp             GGCCCSSHHHHHHHHHHHHHHHHGGG---CS--SCEEEEEECEEESSSC
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHH---cC--CCEEEEeCCcEECcCC
Confidence            55566778999999999988887654   34  8888999999998754

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.78  E-value=1.2e-18  Score=146.19  Aligned_cols=154  Identities=19%  Similarity=0.188  Sum_probs=118.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++|||||+|+||++++++|++ |++|++++|+.+..           ++     +.+|++|++++..+++++     ++|
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~-----------~~-----~~~Dl~~~~~~~~~~~~~-----~~d   59 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ-----------GG-----YKLDLTDFPRLEDFIIKK-----RPD   59 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT-----------TC-----EECCTTSHHHHHHHHHHH-----CCS
T ss_pred             EEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC-----------CC-----ceeccCCHHHHHHHHHhc-----CCC
Confidence            699999999999999999995 89999999987420           12     789999999999999876     699


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES  190 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~  190 (255)
                      +||||||....  ..+.+++.+.+++|+.++.++++++.+   .       ++++|++||..++...+.     ++++..
T Consensus        60 ~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~---~-------~~~iv~~SS~~~~~~~~~-----~~~e~~  122 (273)
T 2ggs_A           60 VIINAAAMTDV--DKCEIEKEKAYKINAEAVRHIVRAGKV---I-------DSYIVHISTDYVFDGEKG-----NYKEED  122 (273)
T ss_dssp             EEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHH---T-------TCEEEEEEEGGGSCSSSC-----SBCTTS
T ss_pred             EEEECCcccCh--hhhhhCHHHHHHHhHHHHHHHHHHHHH---h-------CCeEEEEecceeEcCCCC-----CcCCCC
Confidence            99999996432  123467888999999999999999853   1       349999999886543211     344444


Q ss_pred             CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEee
Q 025275          191 AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLH  229 (255)
Q Consensus       191 ~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~  229 (255)
                      +..+...|+.+|++++.+++.    +....  +|++.|.
T Consensus       123 ~~~~~~~Y~~sK~~~e~~~~~----~~~~~--iR~~~v~  155 (273)
T 2ggs_A          123 IPNPINYYGLSKLLGETFALQ----DDSLI--IRTSGIF  155 (273)
T ss_dssp             CCCCSSHHHHHHHHHHHHHCC----TTCEE--EEECCCB
T ss_pred             CCCCCCHHHHHHHHHHHHHhC----CCeEE--Eeccccc
Confidence            555667899999999998887    22222  6666555

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.77  E-value=1e-19  Score=156.16  Aligned_cols=175  Identities=15%  Similarity=0.003  Sum_probs=119.8

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++++++|||||+|+||.+++++|+++|++|++++|+........+.+........+.++.+|++               
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~---------------   68 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS---------------   68 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT---------------
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc---------------
Confidence            35678999999999999999999999999999999987521000011111111234555666665               


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDK  185 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~  185 (255)
                        ++|+|||+|+......  ..+...+.++ |+.++.++++++.+..         ..++|++||...+.. .   +..+
T Consensus        69 --~~d~vi~~a~~~~~~~--~~~~~~~~~~-n~~~~~~ll~a~~~~~---------v~~~v~~SS~~v~~~-~---~~~~  130 (321)
T 3vps_A           69 --DVRLVYHLASHKSVPR--SFKQPLDYLD-NVDSGRHLLALCTSVG---------VPKVVVGSTCEVYGQ-A---DTLP  130 (321)
T ss_dssp             --TEEEEEECCCCCCHHH--HTTSTTTTHH-HHHHHHHHHHHHHHHT---------CCEEEEEEEGGGGCS-C---SSSS
T ss_pred             --cCCEEEECCccCChHH--HHhCHHHHHH-HHHHHHHHHHHHHHcC---------CCeEEEecCHHHhCC-C---CCCC
Confidence              6999999999754210  1112223456 9999999998886543         249999999775432 1   2224


Q ss_pred             CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcE-EEEEeeCCceecCcc
Q 025275          186 INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNI-TANSLHPGSIVTNLF  238 (255)
Q Consensus       186 ~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i-~vn~v~PG~v~t~~~  238 (255)
                      +++..+..+...|+.+|.+.+.+++.++.+.   +  + +++.++|+.+.++..
T Consensus       131 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~~ilRp~~v~G~~~  179 (321)
T 3vps_A          131 TPEDSPLSPRSPYAASKVGLEMVAGAHQRAS---V--APEVGIVRFFNVYGPGE  179 (321)
T ss_dssp             BCTTSCCCCCSHHHHHHHHHHHHHHHHHHSS---S--SCEEEEEEECEEECTTC
T ss_pred             CCCCCCCCCCChhHHHHHHHHHHHHHHHHHc---C--CCceEEEEeccccCcCC
Confidence            5555666677899999999998888877653   4  7 888899999998753

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.76  E-value=3.5e-18  Score=138.95  Aligned_cols=160  Identities=14%  Similarity=0.157  Sum_probs=105.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++|||||+|+||++++++|+++|++|++++|+.+++....         ..+.++.+|++|.++  ..+       .++|
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---------~~~~~~~~D~~d~~~--~~~-------~~~d   63 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---------KDINILQKDIFDLTL--SDL-------SDQN   63 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---------SSSEEEECCGGGCCH--HHH-------TTCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---------CCCeEEeccccChhh--hhh-------cCCC
Confidence            6999999999999999999999999999999986543321         368899999999877  222       3689


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES  190 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~  190 (255)
                      +||||||.....           ...|+.++.++++    .+++     .+.+++|++||..++.+.+...   ...+..
T Consensus        64 ~vi~~ag~~~~~-----------~~~~~~~~~~l~~----a~~~-----~~~~~~v~~SS~~~~~~~~~~~---~~~~~~  120 (221)
T 3ew7_A           64 VVVDAYGISPDE-----------AEKHVTSLDHLIS----VLNG-----TVSPRLLVVGGAASLQIDEDGN---TLLESK  120 (221)
T ss_dssp             EEEECCCSSTTT-----------TTSHHHHHHHHHH----HHCS-----CCSSEEEEECCCC------------------
T ss_pred             EEEECCcCCccc-----------cchHHHHHHHHHH----HHHh-----cCCceEEEEecceEEEcCCCCc---cccccC
Confidence            999999973221           2345555555554    4443     2357999999988776443211   111222


Q ss_pred             CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          191 AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       191 ~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      +..+...|+.+|.+.+.+. .+..  ...+  ++++.|+||.+.++
T Consensus       121 ~~~~~~~y~~~k~~~e~~~-~~~~--~~~g--i~~~ivrp~~v~g~  161 (221)
T 3ew7_A          121 GLREAPYYPTARAQAKQLE-HLKS--HQAE--FSWTYISPSAMFEP  161 (221)
T ss_dssp             ----CCCSCCHHHHHHHHH-HHHT--TTTT--SCEEEEECSSCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHH-HHHh--hccC--ccEEEEeCcceecC
Confidence            3334567999998877652 1111  1455  88899999999987

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.76  E-value=1.5e-18  Score=147.00  Aligned_cols=155  Identities=17%  Similarity=0.190  Sum_probs=121.3

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++|||||+|+||++++++|+++|++|++++|.                       ++|++|.+++..+++++     ++
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~D~~d~~~~~~~~~~~-----~~   57 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK-----------------------LLDITNISQVQQVVQEI-----RP   57 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT-----------------------TSCTTCHHHHHHHHHHH-----CC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc-----------------------ccCCCCHHHHHHHHHhc-----CC
Confidence            389999999999999999999999999999982                       27999999999999976     69


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+|+....  ..+.+++.+.+++|+.++.++++++.+.          +.++|++||...+.. ..   ..+++++
T Consensus        58 d~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~~~v~~SS~~vy~~-~~---~~~~~E~  121 (287)
T 3sc6_A           58 HIIIHCAAYTKV--DQAEKERDLAYVINAIGARNVAVASQLV----------GAKLVYISTDYVFQG-DR---PEGYDEF  121 (287)
T ss_dssp             SEEEECCCCCCH--HHHTTCHHHHHHHHTHHHHHHHHHHHHH----------TCEEEEEEEGGGSCC-CC---SSCBCTT
T ss_pred             CEEEECCcccCh--HHHhcCHHHHHHHHHHHHHHHHHHHHHc----------CCeEEEEchhhhcCC-CC---CCCCCCC
Confidence            999999997532  1223567888999999999999988532          238999999865432 21   1245556


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .+..+...|+.+|.+.+.+++.++.         +++.++|+.+.++.
T Consensus       122 ~~~~p~~~Y~~sK~~~E~~~~~~~~---------~~~ilR~~~v~G~~  160 (287)
T 3sc6_A          122 HNPAPINIYGASKYAGEQFVKELHN---------KYFIVRTSWLYGKY  160 (287)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHCS---------SEEEEEECSEECSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCC---------CcEEEeeeeecCCC
Confidence            6667778999999998888776533         23458899988764

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.76  E-value=2.8e-18  Score=145.96  Aligned_cols=157  Identities=15%  Similarity=0.106  Sum_probs=120.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++|||||+|+||++++++|+ +|++|++++|+.+                   ++.+|++|.+++.++++..     ++|
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-------------------~~~~D~~d~~~~~~~~~~~-----~~d   56 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-------------------EFCGDFSNPKGVAETVRKL-----RPD   56 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-------------------SSCCCTTCHHHHHHHHHHH-----CCS
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-------------------cccccCCCHHHHHHHHHhc-----CCC
Confidence            69999999999999999999 8999999998761                   3468999999999998865     589


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES  190 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~  190 (255)
                      +|||+|+.....  .+.+++.+.+++|+.++.++++++.+          .+.++|++||...+... ..   .++++..
T Consensus        57 ~vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~----------~~~~~v~~SS~~vy~~~-~~---~~~~E~~  120 (299)
T 1n2s_A           57 VIVNAAAHTAVD--KAESEPELAQLLNATSVEAIAKAANE----------TGAWVVHYSTDYVFPGT-GD---IPWQETD  120 (299)
T ss_dssp             EEEECCCCCCHH--HHTTCHHHHHHHHTHHHHHHHHHHTT----------TTCEEEEEEEGGGSCCC-TT---CCBCTTS
T ss_pred             EEEECcccCCHh--hhhcCHHHHHHHHHHHHHHHHHHHHH----------cCCcEEEEecccEEeCC-CC---CCCCCCC
Confidence            999999964321  12345678899999999999988842          12389999998654322 11   2344555


Q ss_pred             CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          191 AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       191 ~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      +..+...|+.+|.+.+.+++.++.         +++.++|+.+.++.
T Consensus       121 ~~~p~~~Y~~sK~~~E~~~~~~~~---------~~~ilRp~~v~G~~  158 (299)
T 1n2s_A          121 ATSPLNVYGKTKLAGEKALQDNCP---------KHLIFRTSWVYAGK  158 (299)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHCS---------SEEEEEECSEECSS
T ss_pred             CCCCccHHHHHHHHHHHHHHHhCC---------CeEEEeeeeecCCC
Confidence            556677999999998888776532         35569999998874

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.74  E-value=1.8e-17  Score=151.64  Aligned_cols=181  Identities=13%  Similarity=0.100  Sum_probs=127.7

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch---HHHHHHHHHhh-------CCCCceEEEEeCCCCHHHHHHH
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA---GKDVREAIVKE-------IPSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~---~~~~~~~~~~~-------~~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      .++||||||+|+||.+++++|.+.|++|++++|+...   .....+.+...       ....++.++.+|+++++++.  
T Consensus       150 ~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~--  227 (508)
T 4f6l_B          150 LGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV--  227 (508)
T ss_dssp             CEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC--
T ss_pred             CCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC--
Confidence            4799999999999999999999999999999999873   22333332221       11357999999999977766  


Q ss_pred             HHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccc
Q 025275           99 ASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYS  178 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~  178 (255)
                            ...++|+|||||+....     ...+.+.+++|+.++.++++++.+   .       ..++|++||... ....
T Consensus       228 ------~~~~~D~Vih~Aa~~~~-----~~~~~~~~~~Nv~gt~~ll~~a~~---~-------~~~~v~iSS~~v-G~~~  285 (508)
T 4f6l_B          228 ------LPENMDTIIHAGARTDH-----FGDDDEFEKVNVQGTVDVIRLAQQ---H-------HARLIYVSTISV-GTYF  285 (508)
T ss_dssp             ------CSSCCSEEEECCCC-------------CCHHHHHHHHHHHHHHHHT---T-------TCEEEEEEESCT-TSEE
T ss_pred             ------CccCCCEEEECCceecC-----CCCHHHHhhhHHHHHHHHHHHHHh---C-------CCcEEEeCChhh-ccCC
Confidence                  34579999999996532     234566789999999999998875   1       359999999886 2111


Q ss_pred             cC-ccCCCCCcccC---CCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          179 EG-IRFDKINDESA---YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       179 ~~-~~~~~~~~~~~---~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      .. .+..++.+..+   ..+...|+.+|.+.+.+++.++    +.|  ++++.++||.|.++...
T Consensus       286 ~~~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~----~~g--i~~~ilRp~~v~G~~~~  344 (508)
T 4f6l_B          286 DIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAV----NNG--LDGRIVRVGNLTSPYNG  344 (508)
T ss_dssp             CTTCSCCEECTTCSCSSBCCCSHHHHHHHHHHHHHHHHH----HTT--CEEEEEEECCEESCSSS
T ss_pred             ccCCcCcccccccccccccCCCcHHHHHHHHHHHHHHHH----HcC--CCEEEEecceeccCCCC
Confidence            10 01112222222   2356789999999888887754    246  89999999999988643

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.73  E-value=8.7e-19  Score=148.50  Aligned_cols=161  Identities=16%  Similarity=0.042  Sum_probs=119.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +++++|||| +|+||++++++|+++|++|++++|+.+.+            ..++.++.+|++|.+++..+++      +
T Consensus         2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~------~   62 (286)
T 3gpi_A            2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM------------PAGVQTLIADVTRPDTLASIVH------L   62 (286)
T ss_dssp             CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC------------CTTCCEEECCTTCGGGCTTGGG------G
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccCCceEEccCCChHHHHHhhc------C
Confidence            357899999 59999999999999999999999987652            3468899999999988777665      2


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+|||+|+..       ..++.+.+++|+.++.++++++..         .+.+++|++||...+. ....   .+++
T Consensus        63 ~~d~vih~a~~~-------~~~~~~~~~~n~~~~~~ll~a~~~---------~~~~~~v~~SS~~vyg-~~~~---~~~~  122 (286)
T 3gpi_A           63 RPEILVYCVAAS-------EYSDEHYRLSYVEGLRNTLSALEG---------APLQHVFFVSSTGVYG-QEVE---EWLD  122 (286)
T ss_dssp             CCSEEEECHHHH-------HHC-----CCSHHHHHHHHHHTTT---------SCCCEEEEEEEGGGCC-CCCS---SEEC
T ss_pred             CCCEEEEeCCCC-------CCCHHHHHHHHHHHHHHHHHHHhh---------CCCCEEEEEcccEEEc-CCCC---CCCC
Confidence            599999999852       244567788999999999988752         2346999999976443 2221   2344


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      +..+..+...|+.+|.+.+.+ +..          ++++.++|+.+.++..
T Consensus       123 E~~~~~p~~~Y~~sK~~~E~~-~~~----------~~~~ilR~~~v~G~~~  162 (286)
T 3gpi_A          123 EDTPPIAKDFSGKRMLEAEAL-LAA----------YSSTILRFSGIYGPGR  162 (286)
T ss_dssp             TTSCCCCCSHHHHHHHHHHHH-GGG----------SSEEEEEECEEEBTTB
T ss_pred             CCCCCCCCChhhHHHHHHHHH-Hhc----------CCeEEEecccccCCCc
Confidence            555666778999999998776 432          3456699999988753

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.72  E-value=2.3e-17  Score=139.55  Aligned_cols=145  Identities=17%  Similarity=0.123  Sum_probs=112.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHc--CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALR--GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      |++|||||+|+||++++++|+++  |++|++++|+.++.....    .    ..+.++.+|++|.+++..+++       
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~----~----~~~~~~~~D~~d~~~l~~~~~-------   65 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLA----D----QGVEVRHGDYNQPESLQKAFA-------   65 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHH----H----TTCEEEECCTTCHHHHHHHTT-------
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHh----h----cCCeEEEeccCCHHHHHHHHh-------
Confidence            46999999999999999999999  999999999877654322    1    257889999999998887776       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+|||+|+..  .   . +      ++|+.++.++++++...         +.++||++||..+..            
T Consensus        66 ~~d~vi~~a~~~--~---~-~------~~n~~~~~~l~~a~~~~---------~~~~~v~~Ss~~~~~------------  112 (287)
T 2jl1_A           66 GVSKLLFISGPH--Y---D-N------TLLIVQHANVVKAARDA---------GVKHIAYTGYAFAEE------------  112 (287)
T ss_dssp             TCSEEEECCCCC--S---C-H------HHHHHHHHHHHHHHHHT---------TCSEEEEEEETTGGG------------
T ss_pred             cCCEEEEcCCCC--c---C-c------hHHHHHHHHHHHHHHHc---------CCCEEEEECCCCCCC------------
Confidence            489999999852  1   1 1      57888998888877432         235999999976431            


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                            ....|+.+|.+.+.+++.       .+  ++++.++||.+.++.
T Consensus       113 ------~~~~y~~~K~~~E~~~~~-------~~--~~~~ilrp~~~~~~~  147 (287)
T 2jl1_A          113 ------SIIPLAHVHLATEYAIRT-------TN--IPYTFLRNALYTDFF  147 (287)
T ss_dssp             ------CCSTHHHHHHHHHHHHHH-------TT--CCEEEEEECCBHHHH
T ss_pred             ------CCCchHHHHHHHHHHHHH-------cC--CCeEEEECCEecccc
Confidence                  123799999998887752       45  888889999987764

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.70  E-value=1.9e-16  Score=134.89  Aligned_cols=157  Identities=15%  Similarity=0.037  Sum_probs=110.9

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +|+++||||+|+||++++++|+++| ++|++++|+.++...  +.+..    ..+.++.+|++|++++..+++       
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~~----~~~~~~~~D~~d~~~l~~~~~-------   71 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELRL----QGAEVVQGDQDDQVIMELALN-------   71 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHHH----TTCEEEECCTTCHHHHHHHHT-------
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHHH----CCCEEEEecCCCHHHHHHHHh-------
Confidence            4789999999999999999999999 999999999765421  22322    257889999999999988876       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+|||+++.....          ....|+.++.+++++    +++     .+.++||++|+. +......        
T Consensus        72 ~~d~vi~~a~~~~~~----------~~~~~~~~~~~~~~a----a~~-----~gv~~iv~~S~~-~~~~~~~--------  123 (299)
T 2wm3_A           72 GAYATFIVTNYWESC----------SQEQEVKQGKLLADL----ARR-----LGLHYVVYSGLE-NIKKLTA--------  123 (299)
T ss_dssp             TCSEEEECCCHHHHT----------CHHHHHHHHHHHHHH----HHH-----HTCSEEEECCCC-CHHHHTT--------
T ss_pred             cCCEEEEeCCCCccc----------cchHHHHHHHHHHHH----HHH-----cCCCEEEEEcCc-cccccCC--------
Confidence            589999999853211          123445555555544    443     124589996554 3332111        


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                          ......|..+|++++.+++.       .|  ++++.|+||++.+++..
T Consensus       124 ----~~~~~~y~~sK~~~e~~~~~-------~g--i~~~ilrp~~~~~~~~~  162 (299)
T 2wm3_A          124 ----GRLAAAHFDGKGEVEEYFRD-------IG--VPMTSVRLPCYFENLLS  162 (299)
T ss_dssp             ----TSCCCHHHHHHHHHHHHHHH-------HT--CCEEEEECCEEGGGGGT
T ss_pred             ----CcccCchhhHHHHHHHHHHH-------CC--CCEEEEeecHHhhhchh
Confidence                11235799999998887764       25  88889999999998654

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.68  E-value=4.3e-16  Score=136.19  Aligned_cols=153  Identities=17%  Similarity=0.130  Sum_probs=109.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeC-CCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD-VSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~si~~~~~~~~~~  105 (255)
                      +++++++||||+|+||++++++|+++|++|++++|+.++..  .+.+..   ...+.++.+| ++|.+++..+++     
T Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--~~~l~~---~~~v~~v~~D~l~d~~~l~~~~~-----   72 (352)
T 1xgk_A            3 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQA---IPNVTLFQGPLLNNVPLMDTLFE-----   72 (352)
T ss_dssp             CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHT---STTEEEEESCCTTCHHHHHHHHT-----
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh--HHHHhh---cCCcEEEECCccCCHHHHHHHHh-----
Confidence            34678999999999999999999999999999999887642  123322   2357889999 999999988876     


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc-ccccccCccCC
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH-RFAYSEGIRFD  184 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~-~~~~~~~~~~~  184 (255)
                        .+|++|||++...      .       +.|..+ .++++++    ++.    +..++||++||... ..         
T Consensus        73 --~~d~Vi~~a~~~~------~-------~~~~~~-~~l~~aa----~~~----g~v~~~V~~SS~~~~~~---------  119 (352)
T 1xgk_A           73 --GAHLAFINTTSQA------G-------DEIAIG-KDLADAA----KRA----GTIQHYIYSSMPDHSLY---------  119 (352)
T ss_dssp             --TCSEEEECCCSTT------S-------CHHHHH-HHHHHHH----HHH----SCCSEEEEEECCCGGGT---------
T ss_pred             --cCCEEEEcCCCCC------c-------HHHHHH-HHHHHHH----HHc----CCccEEEEeCCcccccc---------
Confidence              4799999997531      0       124443 4444444    431    11359999999762 22         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                            +......|..+|++++.+++.+       +  ++++.|+||++.+..
T Consensus       120 ------~~~~~~~y~~sK~~~E~~~~~~-------g--i~~~ivrpg~~g~~~  157 (352)
T 1xgk_A          120 ------GPWPAVPMWAPKFTVENYVRQL-------G--LPSTFVYAGIYNNNF  157 (352)
T ss_dssp             ------SSCCCCTTTHHHHHHHHHHHTS-------S--SCEEEEEECEEGGGC
T ss_pred             ------CCCCCccHHHHHHHHHHHHHHc-------C--CCEEEEecceecCCc
Confidence                  1123357999999988887652       4  788889999875543

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.68  E-value=4e-16  Score=135.67  Aligned_cols=159  Identities=14%  Similarity=0.037  Sum_probs=112.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +.+++|||||+|+||++++++|++.|++|++++|+........+.+.... ...+.++.+|++|.+++.+++++.     
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~-~~~v~~~~~Dl~d~~~l~~~~~~~-----   82 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALE-DKGAIIVYGLINEQEAMEKILKEH-----   82 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHH-HTTCEEEECCTTCHHHHHHHHHHT-----
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHH-hCCcEEEEeecCCHHHHHHHHhhC-----
Confidence            35789999999999999999999999999999998732222222222111 236899999999999999999864     


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+|||+++..                 |+.+..++++++...-        .-.++|+  |..+..          .+
T Consensus        83 ~~d~Vi~~a~~~-----------------n~~~~~~l~~aa~~~g--------~v~~~v~--S~~g~~----------~~  125 (346)
T 3i6i_A           83 EIDIVVSTVGGE-----------------SILDQIALVKAMKAVG--------TIKRFLP--SEFGHD----------VN  125 (346)
T ss_dssp             TCCEEEECCCGG-----------------GGGGHHHHHHHHHHHC--------CCSEEEC--SCCSSC----------TT
T ss_pred             CCCEEEECCchh-----------------hHHHHHHHHHHHHHcC--------CceEEee--cccCCC----------CC
Confidence            699999999861                 7778888887775432        1236664  333211          12


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      +..+..+...|+.+|.+++.+.+.       .+  +.++.++||.+.....
T Consensus       126 e~~~~~p~~~y~~sK~~~e~~l~~-------~g--~~~tivrpg~~~g~~~  167 (346)
T 3i6i_A          126 RADPVEPGLNMYREKRRVRQLVEE-------SG--IPFTYICCNSIASWPY  167 (346)
T ss_dssp             TCCCCTTHHHHHHHHHHHHHHHHH-------TT--CCBEEEECCEESSCCC
T ss_pred             ccCcCCCcchHHHHHHHHHHHHHH-------cC--CCEEEEEecccccccC
Confidence            233445667899999997766654       35  7777899998887553

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.68  E-value=1.5e-16  Score=134.28  Aligned_cols=142  Identities=15%  Similarity=0.086  Sum_probs=105.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHc--CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           31 TAIVTGASSGIGTETARVLALR--GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++|||||+|+||++++++|+++  |++|++++|+.+......    .    ..+.++.+|++|++++..+++       +
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~----~----~~~~~~~~D~~d~~~~~~~~~-------~   65 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALA----A----QGITVRQADYGDEAALTSALQ-------G   65 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHH----H----TTCEEEECCTTCHHHHHHHTT-------T
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhh----c----CCCeEEEcCCCCHHHHHHHHh-------C
Confidence            4899999999999999999998  999999999877654322    1    257889999999998887775       5


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      +|+|||+|+...              ..|+.++.++++++...         +.++||++||..+..             
T Consensus        66 ~d~vi~~a~~~~--------------~~~~~~~~~l~~a~~~~---------~~~~~v~~Ss~~~~~-------------  109 (286)
T 2zcu_A           66 VEKLLLISSSEV--------------GQRAPQHRNVINAAKAA---------GVKFIAYTSLLHADT-------------  109 (286)
T ss_dssp             CSEEEECC----------------------CHHHHHHHHHHHH---------TCCEEEEEEETTTTT-------------
T ss_pred             CCEEEEeCCCCc--------------hHHHHHHHHHHHHHHHc---------CCCEEEEECCCCCCC-------------
Confidence            799999998521              13566766666666432         235999999976431             


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                           ....|+.+|.+++.+++.       .+  ++++.++||++.++.
T Consensus       110 -----~~~~y~~sK~~~e~~~~~-------~~--~~~~ilrp~~~~~~~  144 (286)
T 2zcu_A          110 -----SPLGLADEHIETEKMLAD-------SG--IVYTLLRNGWYSENY  144 (286)
T ss_dssp             -----CCSTTHHHHHHHHHHHHH-------HC--SEEEEEEECCBHHHH
T ss_pred             -----CcchhHHHHHHHHHHHHH-------cC--CCeEEEeChHHhhhh
Confidence                 124799999998887753       35  889999999887764

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.64  E-value=4.6e-15  Score=126.46  Aligned_cols=152  Identities=14%  Similarity=0.125  Sum_probs=103.2

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-------chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-------AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      +++++||||+|+||++++++|+++|++|++++|+.       ++.+. .+.+..    ..+.++.+|++|.+++..+++ 
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~-~~~l~~----~~v~~v~~D~~d~~~l~~~~~-   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEEL-IDNYQS----LGVILLEGDINDHETLVKAIK-   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHH-HHHHHH----TTCEEEECCTTCHHHHHHHHT-
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHH-HHHHHh----CCCEEEEeCCCCHHHHHHHHh-
Confidence            46899999999999999999999999999999986       33322 223322    257899999999999888876 


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                            ++|+|||+++...                 +.+..++++++    ++.    +.-.++|  .|..+..  .+  
T Consensus        76 ------~~d~vi~~a~~~~-----------------~~~~~~l~~aa----~~~----g~v~~~v--~S~~g~~--~~--  118 (307)
T 2gas_A           76 ------QVDIVICAAGRLL-----------------IEDQVKIIKAI----KEA----GNVKKFF--PSEFGLD--VD--  118 (307)
T ss_dssp             ------TCSEEEECSSSSC-----------------GGGHHHHHHHH----HHH----CCCSEEE--CSCCSSC--TT--
T ss_pred             ------CCCEEEECCcccc-----------------cccHHHHHHHH----Hhc----CCceEEe--ecccccC--cc--
Confidence                  5899999998632                 23344444444    331    1134776  3433321  00  


Q ss_pred             cCCCCCcccC-CCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          182 RFDKINDESA-YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       182 ~~~~~~~~~~-~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                            +..+ .+....| .+|++++.+++.       .+  ++++.|+||++.+++..
T Consensus       119 ------~~~~~~p~~~~y-~sK~~~e~~~~~-------~~--i~~~~lrp~~~~~~~~~  161 (307)
T 2gas_A          119 ------RHDAVEPVRQVF-EEKASIRRVIEA-------EG--VPYTYLCCHAFTGYFLR  161 (307)
T ss_dssp             ------SCCCCTTHHHHH-HHHHHHHHHHHH-------HT--CCBEEEECCEETTTTGG
T ss_pred             ------cccCCCcchhHH-HHHHHHHHHHHH-------cC--CCeEEEEcceeeccccc
Confidence                  1111 2224578 999988876652       24  77888999999887543

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.63  E-value=1.5e-15  Score=132.41  Aligned_cols=173  Identities=12%  Similarity=0.016  Sum_probs=117.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcC-----CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           29 GLTAIVTGASSGIGTETARVLALRG-----VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G-----~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      +|++|||||+|+||++++++|+++|     ++|++++|+.....         ....++.++.+|++|.+++.++++.+ 
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~~~~~-   70 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW---------HEDNPINYVQCDISDPDDSQAKLSPL-   70 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC---------CCSSCCEEEECCTTSHHHHHHHHTTC-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc---------cccCceEEEEeecCCHHHHHHHHhcC-
Confidence            4789999999999999999999999     99999999876532         01346889999999999888877643 


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEE-------EecCCccccc
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIV-------NVSSEAHRFA  176 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii-------~vsS~~~~~~  176 (255)
                         +.+|+|||+|+...       +++.+.+++|+.++.++++++.+...       +..++|       ++||...+..
T Consensus        71 ---~~~d~vih~a~~~~-------~~~~~~~~~n~~~~~~l~~a~~~~~~-------~~~~~v~~~g~~i~~Ss~~vyg~  133 (364)
T 2v6g_A           71 ---TDVTHVFYVTWANR-------STEQENCEANSKMFRNVLDAVIPNCP-------NLKHISLQTGRKHYMGPFESYGK  133 (364)
T ss_dssp             ---TTCCEEEECCCCCC-------SSHHHHHHHHHHHHHHHHHHHTTTCT-------TCCEEEEECCTHHHHCCGGGTTT
T ss_pred             ---CCCCEEEECCCCCc-------chHHHHHHHhHHHHHHHHHHHHHhcc-------ccceEEeccCceEEEechhhccc
Confidence               24999999999642       24577899999999999998875421       123666       6777654321


Q ss_pred             cccCccCCCCCcccCCCC-ccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          177 YSEGIRFDKINDESAYNS-FGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~-~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      ...  +..++++..+..+ ...|.    +.+.    +..++.+...++++..++|+.+..+..
T Consensus       134 ~~~--~~~~~~E~~~~~~~~~~y~----~~E~----~~~~~~~~~~~~~~~ilRp~~v~G~~~  186 (364)
T 2v6g_A          134 IES--HDPPYTEDLPRLKYMNFYY----DLED----IMLEEVEKKEGLTWSVHRPGNIFGFSP  186 (364)
T ss_dssp             SCC--CCSSBCTTSCCCSSCCHHH----HHHH----HHHHHHTTSTTCEEEEEEESSEECCCT
T ss_pred             ccc--CCCCCCccccCCccchhhH----HHHH----HHHHHhhcCCCceEEEECCCceeCCCC
Confidence            110  0112333333322 34562    2233    333443321127888899999998643

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.62  E-value=4.4e-15  Score=125.44  Aligned_cols=153  Identities=14%  Similarity=0.097  Sum_probs=108.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++||||| |+||.+++++|+++|++|++++|+.++.....    .    ..+.++.+|++|.+            ..++
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~----~~~~~~~~D~~d~~------------~~~~   64 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR----A----SGAEPLLWPGEEPS------------LDGV   64 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH----H----TTEEEEESSSSCCC------------CTTC
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh----h----CCCeEEEecccccc------------cCCC
Confidence            78999998 99999999999999999999999987654332    1    25889999999932            4579


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+|+.....     +..              .+.+++.+++..   .+..++|++||...+ +....   .+++++
T Consensus        65 d~vi~~a~~~~~~-----~~~--------------~~~l~~a~~~~~---~~~~~~v~~Ss~~vy-g~~~~---~~~~E~  118 (286)
T 3ius_A           65 THLLISTAPDSGG-----DPV--------------LAALGDQIAARA---AQFRWVGYLSTTAVY-GDHDG---AWVDET  118 (286)
T ss_dssp             CEEEECCCCBTTB-----CHH--------------HHHHHHHHHHTG---GGCSEEEEEEEGGGG-CCCTT---CEECTT
T ss_pred             CEEEECCCccccc-----cHH--------------HHHHHHHHHhhc---CCceEEEEeecceec-CCCCC---CCcCCC
Confidence            9999999864321     111              123333333310   123599999997544 22222   234455


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .+..+...|+.+|.+.+.+++.+      .+  ++++.++|+.+.++.
T Consensus       119 ~~~~p~~~Y~~sK~~~E~~~~~~------~~--~~~~ilRp~~v~G~~  158 (286)
T 3ius_A          119 TPLTPTAARGRWRVMAEQQWQAV------PN--LPLHVFRLAGIYGPG  158 (286)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHS------TT--CCEEEEEECEEEBTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhh------cC--CCEEEEeccceECCC
Confidence            56666788999999988877766      45  888889999998874

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.61  E-value=2.2e-15  Score=127.54  Aligned_cols=146  Identities=18%  Similarity=0.127  Sum_probs=101.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           31 TAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ++|||||+|+||++++++|++. |++|++++|+.++....    .    ...+.++.+|++|++++..+++       ++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~----~----~~~v~~~~~D~~d~~~l~~~~~-------~~   66 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD----W----RGKVSVRQLDYFNQESMVEAFK-------GM   66 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG----G----BTTBEEEECCTTCHHHHHHHTT-------TC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh----h----hCCCEEEEcCCCCHHHHHHHHh-------CC
Confidence            5999999999999999999998 89999999998754321    1    3468999999999998888776       58


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+|+.....            ..|+.++.++++++    ++     .+.++||++||.....              
T Consensus        67 d~vi~~a~~~~~~------------~~~~~~~~~l~~aa----~~-----~gv~~iv~~Ss~~~~~--------------  111 (289)
T 3e48_A           67 DTVVFIPSIIHPS------------FKRIPEVENLVYAA----KQ-----SGVAHIIFIGYYADQH--------------  111 (289)
T ss_dssp             SEEEECCCCCCSH------------HHHHHHHHHHHHHH----HH-----TTCCEEEEEEESCCST--------------
T ss_pred             CEEEEeCCCCccc------------hhhHHHHHHHHHHH----HH-----cCCCEEEEEcccCCCC--------------
Confidence            9999999863321            12555555555444    44     2345999999954211              


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                           ...|..++..     ..+...+...+  ++++.++||++.+++.
T Consensus       112 -----~~~~~~~~~~-----~~~e~~~~~~g--~~~~ilrp~~~~~~~~  148 (289)
T 3e48_A          112 -----NNPFHMSPYF-----GYASRLLSTSG--IDYTYVRMAMYMDPLK  148 (289)
T ss_dssp             -----TCCSTTHHHH-----HHHHHHHHHHC--CEEEEEEECEESTTHH
T ss_pred             -----CCCCccchhH-----HHHHHHHHHcC--CCEEEEeccccccccH
Confidence                 1112222211     12333344556  8999999999998754

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.61  E-value=7.1e-15  Score=134.69  Aligned_cols=165  Identities=15%  Similarity=0.072  Sum_probs=116.3

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++++|||||+|+||.+++++|+++|++|++++|+....                ..+.+|+.+.  .       .+.+.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~----------------~~v~~d~~~~--~-------~~~l~~  201 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP----------------GKRFWDPLNP--A-------SDLLDG  201 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT----------------TCEECCTTSC--C-------TTTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc----------------cceeecccch--h-------HHhcCC
Confidence            57899999999999999999999999999999997642                1256777643  1       233457


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      +|+|||+|+..... ..+.+.....+++|+.++.++++++.   .+     .+.+++|++||...+.......   ++++
T Consensus       202 ~D~Vih~A~~~~~~-~~~~~~~~~~~~~Nv~gt~~ll~a~a---~~-----~~~~r~V~~SS~~vyg~~~~~~---~~~E  269 (516)
T 3oh8_A          202 ADVLVHLAGEPIFG-RFNDSHKEAIRESRVLPTKFLAELVA---ES-----TQCTTMISASAVGFYGHDRGDE---ILTE  269 (516)
T ss_dssp             CSEEEECCCC------CCGGGHHHHHHHTHHHHHHHHHHHH---HC-----SSCCEEEEEEEGGGGCSEEEEE---EECT
T ss_pred             CCEEEECCCCcccc-ccchhHHHHHHHHHHHHHHHHHHHHH---hc-----CCCCEEEEeCcceEecCCCCCC---ccCC
Confidence            99999999975322 34566788899999999999999743   11     2346999999976543111111   2233


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      ..+. +...|+.+|...+.+.    ......|  ++++.++||.+.++.
T Consensus       270 ~~~~-~~~~y~~~~~~~E~~~----~~~~~~g--i~~~ilRp~~v~Gp~  311 (516)
T 3oh8_A          270 ESES-GDDFLAEVCRDWEHAT----APASDAG--KRVAFIRTGVALSGR  311 (516)
T ss_dssp             TSCC-CSSHHHHHHHHHHHTT----HHHHHTT--CEEEEEEECEEEBTT
T ss_pred             CCCC-CcChHHHHHHHHHHHH----HHHHhCC--CCEEEEEeeEEECCC
Confidence            3333 4567888887766543    3344556  899999999999864

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.56  E-value=2.2e-15  Score=132.15  Aligned_cols=137  Identities=17%  Similarity=0.132  Sum_probs=107.3

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +++|||||+|+||++++++|+++|+ +|+.++|+                           +|.+++..+++       +
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~---------------------------~d~~~l~~~~~-------~   46 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ---------------------------TKEEELESALL-------K   46 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT---------------------------CCHHHHHHHHH-------H
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC---------------------------CCHHHHHHHhc-------c
Confidence            3699999999999999999999998 77666554                           77888888887       3


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      +|+|||+|+...+      +++.+.+++|+.++.++++++.+.        +...++|++||.....             
T Consensus        47 ~d~Vih~a~~~~~------~~~~~~~~~n~~~~~~l~~a~~~~--------~~~~~~v~~Ss~~~~~-------------   99 (369)
T 3st7_A           47 ADFIVHLAGVNRP------EHDKEFSLGNVSYLDHVLDILTRN--------TKKPAILLSSSIQATQ-------------   99 (369)
T ss_dssp             CSEEEECCCSBCT------TCSTTCSSSCCBHHHHHHHHHTTC--------SSCCEEEEEEEGGGGS-------------
T ss_pred             CCEEEECCcCCCC------CCHHHHHHHHHHHHHHHHHHHHHh--------CCCCeEEEeCchhhcC-------------
Confidence            8999999997543      233445788999999998887421        2224899999977441             


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                            ...|+.+|.+.+.+++.++.+.   +  +++..++|+.+..+..
T Consensus       100 ------~~~Y~~sK~~~E~~~~~~~~~~---g--~~~~i~R~~~v~G~~~  138 (369)
T 3st7_A          100 ------DNPYGESKLQGEQLLREYAEEY---G--NTVYIYRWPNLFGKWC  138 (369)
T ss_dssp             ------CSHHHHHHHHHHHHHHHHHHHH---C--CCEEEEEECEEECTTC
T ss_pred             ------CCCchHHHHHHHHHHHHHHHHh---C--CCEEEEECCceeCCCC
Confidence                  4689999999999999887765   3  6777799999988743

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.55  E-value=2.4e-14  Score=122.94  Aligned_cols=151  Identities=11%  Similarity=0.066  Sum_probs=100.0

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-c----hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-A----AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .++++||||+|+||++++++|+++|++|++++|+. .    ...+..+.+..    ..+.++.+|++|.+++..+++   
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~----~~v~~v~~D~~d~~~l~~a~~---   76 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRS----MGVTIIEGEMEEHEKMVSVLK---   76 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHH----TTCEEEECCTTCHHHHHHHHT---
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhc----CCcEEEEecCCCHHHHHHHHc---
Confidence            36799999999999999999999999999999986 2    12222222322    258899999999999988887   


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                          ++|+|||+++...                 +.+..++++    .+.+.    +.-++||  .|..+...  +    
T Consensus        77 ----~~d~vi~~a~~~~-----------------~~~~~~l~~----aa~~~----g~v~~~v--~S~~g~~~--~----  119 (321)
T 3c1o_A           77 ----QVDIVISALPFPM-----------------ISSQIHIIN----AIKAA----GNIKRFL--PSDFGCEE--D----  119 (321)
T ss_dssp             ----TCSEEEECCCGGG-----------------SGGGHHHHH----HHHHH----CCCCEEE--CSCCSSCG--G----
T ss_pred             ----CCCEEEECCCccc-----------------hhhHHHHHH----HHHHh----CCccEEe--ccccccCc--c----
Confidence                4899999998532                 233334444    44431    1134776  34333210  0    


Q ss_pred             CCCCcccCC-CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          184 DKINDESAY-NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       184 ~~~~~~~~~-~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                          +..+. +....| .+|++++.+++.       .+  ++++.|+||++.++.
T Consensus       120 ----~~~~~~p~~~~y-~sK~~~e~~~~~-------~~--~~~~~lrp~~~~~~~  160 (321)
T 3c1o_A          120 ----RIKPLPPFESVL-EKKRIIRRAIEA-------AA--LPYTYVSANCFGAYF  160 (321)
T ss_dssp             ----GCCCCHHHHHHH-HHHHHHHHHHHH-------HT--CCBEEEECCEEHHHH
T ss_pred             ----ccccCCCcchHH-HHHHHHHHHHHH-------cC--CCeEEEEeceecccc
Confidence                01111 124579 999998877652       24  666778999887654

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.55  E-value=3.6e-14  Score=121.73  Aligned_cols=150  Identities=10%  Similarity=0.086  Sum_probs=99.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ++++||||+|+||.+++++|+++|++|++++|+.+...+..+++..    ..+.++.+|++|.+++..+++       ++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~----~~v~~v~~Dl~d~~~l~~a~~-------~~   80 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS----LGAIIVKGELDEHEKLVELMK-------KV   80 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH----TTCEEEECCTTCHHHHHHHHT-------TC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc----CCCEEEEecCCCHHHHHHHHc-------CC
Confidence            6799999999999999999999999999999987532333333332    257899999999999988886       58


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+++...                 +.+..+++    +.+++.    +..+++|+  |..+..  .+        +.
T Consensus        81 d~vi~~a~~~~-----------------~~~~~~l~----~aa~~~----g~v~~~v~--S~~g~~--~~--------~~  123 (318)
T 2r6j_A           81 DVVISALAFPQ-----------------ILDQFKIL----EAIKVA----GNIKRFLP--SDFGVE--ED--------RI  123 (318)
T ss_dssp             SEEEECCCGGG-----------------STTHHHHH----HHHHHH----CCCCEEEC--SCCSSC--TT--------TC
T ss_pred             CEEEECCchhh-----------------hHHHHHHH----HHHHhc----CCCCEEEe--eccccC--cc--------cc
Confidence            99999998532                 22333334    344431    11347763  333321  00        11


Q ss_pred             cCC-CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          190 SAY-NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       190 ~~~-~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .+. +....| .+|++++.+++.       .+  +.++.++||++...+
T Consensus       124 ~~~~p~~~~y-~sK~~~e~~~~~-------~~--~~~~~lr~~~~~~~~  162 (318)
T 2r6j_A          124 NALPPFEALI-ERKRMIRRAIEE-------AN--IPYTYVSANCFASYF  162 (318)
T ss_dssp             CCCHHHHHHH-HHHHHHHHHHHH-------TT--CCBEEEECCEEHHHH
T ss_pred             cCCCCcchhH-HHHHHHHHHHHh-------cC--CCeEEEEcceehhhh
Confidence            111 123568 999887776643       34  667778999876643

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.55  E-value=2.5e-14  Score=122.20  Aligned_cols=160  Identities=11%  Similarity=0.043  Sum_probs=104.3

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchH-HHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAG-KDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .++++||||+|+||++++++|+++|++|++++|+.... .+..+.+.... ...+.++.+|++|.+++..+++       
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~l~~~~~-------   75 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALK-------   75 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHT-------
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHH-hCCeEEEeCCCCCHHHHHHHHh-------
Confidence            36799999999999999999999999999999985321 11111121111 2358899999999999888876       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+|||+++.....             .|+.+..++++++.    +.    +.-+++|+  |..+..  ...     + 
T Consensus        76 ~~d~vi~~a~~~~~~-------------~~~~~~~~l~~aa~----~~----g~v~~~v~--S~~g~~--~~~-----~-  124 (313)
T 1qyd_A           76 QVDVVISALAGGVLS-------------HHILEQLKLVEAIK----EA----GNIKRFLP--SEFGMD--PDI-----M-  124 (313)
T ss_dssp             TCSEEEECCCCSSSS-------------TTTTTHHHHHHHHH----HS----CCCSEEEC--SCCSSC--TTS-----C-
T ss_pred             CCCEEEECCccccch-------------hhHHHHHHHHHHHH----hc----CCCceEEe--cCCcCC--ccc-----c-
Confidence            589999999864321             14555555555543    31    11347774  433321  000     0 


Q ss_pred             cccC-CCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          188 DESA-YNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       188 ~~~~-~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                       ..+ .+....| .+|.+++.+.+       ..+  ++++.++||++.+++.
T Consensus       125 -~~~~~p~~~~y-~sK~~~e~~~~-------~~g--~~~~ilrp~~~~~~~~  165 (313)
T 1qyd_A          125 -EHALQPGSITF-IDKRKVRRAIE-------AAS--IPYTYVSSNMFAGYFA  165 (313)
T ss_dssp             -CCCCSSTTHHH-HHHHHHHHHHH-------HTT--CCBCEEECCEEHHHHT
T ss_pred             -ccCCCCCcchH-HHHHHHHHHHH-------hcC--CCeEEEEeceeccccc
Confidence             111 1234578 99998777664       235  7777799998877543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.55  E-value=4.1e-14  Score=120.65  Aligned_cols=154  Identities=14%  Similarity=0.153  Sum_probs=100.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchH--HHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAG--KDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .++++||||+|+||++++++|+++|++|++++|+....  .+..+.+.... ...+.++.+|++|.+++..+++      
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~l~~~~~------   76 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVK------   76 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHH------
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHH-hCCCEEEEeccCCHHHHHHHHc------
Confidence            36799999999999999999999999999999985432  11122222111 2358899999999999988887      


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                       ++|+|||+++...                 +.+..++++++    ++.    +...++|+  |..+..  .+       
T Consensus        77 -~~d~vi~~a~~~~-----------------~~~~~~l~~aa----~~~----g~v~~~v~--S~~g~~--~~-------  119 (308)
T 1qyc_A           77 -NVDVVISTVGSLQ-----------------IESQVNIIKAI----KEV----GTVKRFFP--SEFGND--VD-------  119 (308)
T ss_dssp             -TCSEEEECCCGGG-----------------SGGGHHHHHHH----HHH----CCCSEEEC--SCCSSC--TT-------
T ss_pred             -CCCEEEECCcchh-----------------hhhHHHHHHHH----Hhc----CCCceEee--cccccC--cc-------
Confidence             4899999998532                 22333444444    331    11347763  333321  10       


Q ss_pred             CcccCC-CCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          187 NDESAY-NSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       187 ~~~~~~-~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                       +..+. +....| .+|++++.+.+.       .+  ++++.++||++.+++
T Consensus       120 -~~~~~~p~~~~y-~sK~~~e~~~~~-------~~--~~~~~~r~~~~~~~~  160 (308)
T 1qyc_A          120 -NVHAVEPAKSVF-EVKAKVRRAIEA-------EG--IPYTYVSSNCFAGYF  160 (308)
T ss_dssp             -SCCCCTTHHHHH-HHHHHHHHHHHH-------HT--CCBEEEECCEEHHHH
T ss_pred             -ccccCCcchhHH-HHHHHHHHHHHh-------cC--CCeEEEEeceecccc
Confidence             11121 224578 999988776653       24  667778999887754

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.41  E-value=2.8e-12  Score=108.95  Aligned_cols=162  Identities=17%  Similarity=0.135  Sum_probs=104.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ++||||||||.||++++++|.++|++|+++.|++..              ..+.   .|     .+.      .+....+
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~--------------~~~~---~~-----~~~------~~~l~~~   52 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP--------------GRIT---WD-----ELA------ASGLPSC   52 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT--------------TEEE---HH-----HHH------HHCCCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc--------------Ceee---cc-----hhh------HhhccCC
Confidence            359999999999999999999999999999997642              1111   11     111      1234579


Q ss_pred             eEEEEccCCC--CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          110 NILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       110 d~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      |.+||+|+..  .+....+.....+.++.|+.++-++++++...-       .+...+|+.||...+ +....   ...+
T Consensus        53 d~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~-------~~~~~~i~~Ss~~vy-g~~~~---~~~~  121 (298)
T 4b4o_A           53 DAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAP-------QPPKAWVLVTGVAYY-QPSLT---AEYD  121 (298)
T ss_dssp             SEEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCS-------SCCSEEEEEEEGGGS-CCCSS---CCBC
T ss_pred             CEEEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhC-------CCceEEEEEeeeeee-cCCCC---Cccc
Confidence            9999999843  222334566677888999999888877664332       123456766665543 32222   2344


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      ++.+..+...|+..+...+.     +......+  +++..+.|+.+..+-
T Consensus       122 E~~p~~~~~~~~~~~~~~e~-----~~~~~~~~--~~~~~~r~~~v~g~~  164 (298)
T 4b4o_A          122 EDSPGGDFDFFSNLVTKWEA-----AARLPGDS--TRQVVVRSGVVLGRG  164 (298)
T ss_dssp             TTCCCSCSSHHHHHHHHHHH-----HHCCSSSS--SEEEEEEECEEECTT
T ss_pred             ccCCccccchhHHHHHHHHH-----HHHhhccC--CceeeeeeeeEEcCC
Confidence            55566565666666544332     12233445  888889999998763

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=99.31  E-value=1.8e-12  Score=111.99  Aligned_cols=172  Identities=12%  Similarity=0.017  Sum_probs=110.2

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-------eEEEEEeccc--hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-------HVIMAVRNMA--AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-------~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      ++++||||+|+||.+++..|+++|.       +|++.++...  ........+...    .+.++ .|+.+.+.+...++
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~----~~~~~-~di~~~~~~~~a~~   79 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDC----AFPLL-AGLEATDDPKVAFK   79 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT----TCTTE-EEEEEESCHHHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcc----ccccc-CCeEeccChHHHhC
Confidence            4799999999999999999999986       7999988742  222222223211    11122 46665444444443


Q ss_pred             HHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          101 EYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                             .+|+|||+||....+.    ++..+.++.|+.++.++++++.++-       ....+++++|+......+...
T Consensus        80 -------~~D~Vih~Ag~~~~~~----~~~~~~~~~Nv~~t~~l~~a~~~~~-------~~~~~vvv~snp~~~~~~~~~  141 (327)
T 1y7t_A           80 -------DADYALLVGAAPRKAG----MERRDLLQVNGKIFTEQGRALAEVA-------KKDVKVLVVGNPANTNALIAY  141 (327)
T ss_dssp             -------TCSEEEECCCCCCCTT----CCHHHHHHHHHHHHHHHHHHHHHHS-------CTTCEEEECSSSHHHHHHHHH
T ss_pred             -------CCCEEEECCCcCCCCC----CCHHHHHHHHHHHHHHHHHHHHhhc-------CCCeEEEEeCCchhhhHHHHH
Confidence                   5899999999765331    2345679999999999999887653       023588888886532221110


Q ss_pred             ccCCCCCccc-CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          181 IRFDKINDES-AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       181 ~~~~~~~~~~-~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                             +.. +.++...|+.+|...+.+.+.++..+.     +.+..|+|..|..+
T Consensus       142 -------~~~~~~~p~~~yg~tkl~~er~~~~~a~~~g-----~~~~~vr~~~V~G~  186 (327)
T 1y7t_A          142 -------KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTG-----TGVDRIRRMTVWGN  186 (327)
T ss_dssp             -------HTCTTSCGGGEEECCHHHHHHHHHHHHHHHT-----CCGGGEECCEEEBC
T ss_pred             -------HHcCCCChhheeccchHHHHHHHHHHHHHhC-----cChhheeeeEEEcC
Confidence                   011 233455799999988888888877654     44444555555544

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.31  E-value=4.9e-12  Score=107.32  Aligned_cols=86  Identities=20%  Similarity=0.276  Sum_probs=73.2

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ..++++|+++||||+||+|++++++|+++|++|++++|+.+++++..+++...   ..+.++.+|+++++++..+++   
T Consensus       114 ~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~---~~~~~~~~D~~~~~~~~~~~~---  187 (287)
T 1lu9_A          114 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAVK---  187 (287)
T ss_dssp             TSCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHTT---
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEecCCCHHHHHHHHH---
Confidence            45678999999999999999999999999999999999988888888777553   135678899999988877765   


Q ss_pred             cCCCCeeEEEEccCCC
Q 025275          104 SQGRPLNILINNAGIM  119 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~  119 (255)
                          .+|+||||+|..
T Consensus       188 ----~~DvlVn~ag~g  199 (287)
T 1lu9_A          188 ----GAHFVFTAGAIG  199 (287)
T ss_dssp             ----TCSEEEECCCTT
T ss_pred             ----hCCEEEECCCcc
Confidence                379999999853

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=99.09  E-value=2.2e-10  Score=93.24  Aligned_cols=78  Identities=24%  Similarity=0.295  Sum_probs=60.4

Q ss_pred             CCCCcEEEEecC----------------CCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCC
Q 025275           26 DGTGLTAIVTGA----------------SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV   89 (255)
Q Consensus        26 ~~~~k~vlItG~----------------s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl   89 (255)
                      +++||++|||||                +|++|.++|++|+++|++|+++++... +.         .+. .+  -.+|+
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~---------~~~-g~--~~~dv   71 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP---------TPP-FV--KRVDV   71 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC---------CCT-TE--EEEEC
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc---------cCC-CC--eEEcc
Confidence            478999999999                699999999999999999999987652 11         011 12  34688


Q ss_pred             CCHHHHHHHHHHHhcCCCCeeEEEEccCCC
Q 025275           90 SSLASVRKFASEYNSQGRPLNILINNAGIM  119 (255)
Q Consensus        90 ~~~~si~~~~~~~~~~~g~id~lv~~ag~~  119 (255)
                      ++.++   +++.+.+.++++|++|||||+.
T Consensus        72 ~~~~~---~~~~v~~~~~~~Dili~~Aav~   98 (226)
T 1u7z_A           72 MTALE---MEAAVNASVQQQNIFIGCAAVA   98 (226)
T ss_dssp             CSHHH---HHHHHHHHGGGCSEEEECCBCC
T ss_pred             CcHHH---HHHHHHHhcCCCCEEEECCccc
Confidence            87544   5566666678899999999976

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.95  E-value=3.1e-09  Score=77.11  Aligned_cols=74  Identities=23%  Similarity=0.223  Sum_probs=61.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .+++++|+|+ |++|+++++.|.+.| ++|++++|+.++++...        ...+.++.+|+++.+++..+++      
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~------   68 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN--------RMGVATKQVDAKDEAGLAKALG------   68 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH--------TTTCEEEECCTTCHHHHHHHTT------
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH--------hCCCcEEEecCCCHHHHHHHHc------
Confidence            3578999999 999999999999999 89999999877654433        1246788999999888777664      


Q ss_pred             CCeeEEEEccC
Q 025275          107 RPLNILINNAG  117 (255)
Q Consensus       107 g~id~lv~~ag  117 (255)
                       .+|++|++++
T Consensus        69 -~~d~vi~~~~   78 (118)
T 3ic5_A           69 -GFDAVISAAP   78 (118)
T ss_dssp             -TCSEEEECSC
T ss_pred             -CCCEEEECCC
Confidence             6899999996

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.87  E-value=5.9e-09  Score=85.05  Aligned_cols=78  Identities=14%  Similarity=0.255  Sum_probs=57.2

Q ss_pred             CCcEEEEecC----------------CCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC
Q 025275           28 TGLTAIVTGA----------------SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS   91 (255)
Q Consensus        28 ~~k~vlItG~----------------s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   91 (255)
                      +||++|||||                +|++|.++|++|+++|++|++++|..... .       .. ...+..  .|+..
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~-~-------~~-~~~~~~--~~v~s   70 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALK-P-------EP-HPNLSI--REITN   70 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCC-C-------CC-CTTEEE--EECCS
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccc-c-------cC-CCCeEE--EEHhH
Confidence            5899999999                78899999999999999999999975421 0       00 112333  35554


Q ss_pred             HHHHHHHHHHHhcCCCCeeEEEEccCCC
Q 025275           92 LASVRKFASEYNSQGRPLNILINNAGIM  119 (255)
Q Consensus        92 ~~si~~~~~~~~~~~g~id~lv~~ag~~  119 (255)
                         ++++++.+.+.++.+|++|+||++.
T Consensus        71 ---~~em~~~v~~~~~~~Dili~aAAvs   95 (232)
T 2gk4_A           71 ---TKDLLIEMQERVQDYQVLIHSMAVS   95 (232)
T ss_dssp             ---HHHHHHHHHHHGGGCSEEEECSBCC
T ss_pred             ---HHHHHHHHHHhcCCCCEEEEcCccc
Confidence               5555666666678899999999975

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=98.87  E-value=1.9e-09  Score=83.20  Aligned_cols=76  Identities=12%  Similarity=0.162  Sum_probs=63.2

Q ss_pred             chHHHHHHHHHHcCCeEEEEEeccchHH---HHHHHHHhhCCCCceEEEEeCCCCH--HHHHHHHHHHhcCCCCeeEEEE
Q 025275           40 GIGTETARVLALRGVHVIMAVRNMAAGK---DVREAIVKEIPSAKVDAMELDVSSL--ASVRKFASEYNSQGRPLNILIN  114 (255)
Q Consensus        40 giG~~ia~~L~~~G~~Vi~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~--~si~~~~~~~~~~~g~id~lv~  114 (255)
                      -++.++++.|++.|++|++..|+.+...   +..+.+.+.  +.++..+++|++++  ++++++++.+.+.+|+ |+|||
T Consensus        27 ~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~--G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLVn  103 (157)
T 3gxh_A           27 LPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQA--GMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLVH  103 (157)
T ss_dssp             CCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHT--TCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEEE
T ss_pred             CCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHc--CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEEE
Confidence            4779999999999999999988755432   234444444  66889999999999  9999999999999999 99999


Q ss_pred             ccCC
Q 025275          115 NAGI  118 (255)
Q Consensus       115 ~ag~  118 (255)
                      |||+
T Consensus       104 nAgg  107 (157)
T 3gxh_A          104 CLAN  107 (157)
T ss_dssp             CSBS
T ss_pred             CCCC
Confidence            9995

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.84  E-value=1.7e-08  Score=89.49  Aligned_cols=82  Identities=21%  Similarity=0.338  Sum_probs=71.2

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcC---CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRG---VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G---~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++++|+|| |+||+++++.|++.|   .+|++++|+.+++++..+++.... +.++..+.+|++|.+++++++++.    
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~----   75 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEV----   75 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHH----
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhh----
Confidence            57899999 899999999999998   389999999999888888876532 246889999999999999999986    


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                       ++|+||||++.
T Consensus        76 -~~DvVin~ag~   86 (405)
T 4ina_A           76 -KPQIVLNIALP   86 (405)
T ss_dssp             -CCSEEEECSCG
T ss_pred             -CCCEEEECCCc
Confidence             68999999984

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.65  E-value=6.4e-08  Score=77.04  Aligned_cols=79  Identities=13%  Similarity=0.237  Sum_probs=57.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|++++||||+||||.++++.+...|++|++++|+.+..+..    .+.  +..   ..+|.++.+..+.+.+...  .+
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~----~~~--g~~---~~~d~~~~~~~~~~~~~~~--~~  106 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML----SRL--GVE---YVGDSRSVDFADEILELTD--GY  106 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH----HTT--CCS---EEEETTCSTHHHHHHHHTT--TC
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----HHc--CCC---EEeeCCcHHHHHHHHHHhC--CC
Confidence            579999999999999999999999999999999987654332    222  222   1247777654444444332  13


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++|+|+|
T Consensus       107 ~~D~vi~~~g  116 (198)
T 1pqw_A          107 GVDVVLNSLA  116 (198)
T ss_dssp             CEEEEEECCC
T ss_pred             CCeEEEECCc
Confidence            6999999997

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.65  E-value=5.5e-08  Score=83.81  Aligned_cols=79  Identities=16%  Similarity=0.277  Sum_probs=60.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++|||||+|+||.++++.+...|++|++++++.++++.. +++     +..   ..+|.++.+++.+.+.++..  +
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~-----g~~---~~~d~~~~~~~~~~~~~~~~--~  213 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQI-----GFD---AAFNYKTVNSLEEALKKASP--D  213 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT-----TCS---EEEETTSCSCHHHHHHHHCT--T
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-Hhc-----CCc---EEEecCCHHHHHHHHHHHhC--C
Confidence            589999999999999999999999999999999987665444 332     222   22477774445556665543  5


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++|+|+|
T Consensus       214 ~~d~vi~~~g  223 (333)
T 1v3u_A          214 GYDCYFDNVG  223 (333)
T ss_dssp             CEEEEEESSC
T ss_pred             CCeEEEECCC
Confidence            7999999998

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.65  E-value=5.5e-08  Score=87.41  Aligned_cols=77  Identities=19%  Similarity=0.276  Sum_probs=61.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++++++|+| +|++|+++++.|++.|++|++++|+.++.++..+    ..  ..+..+.+|++|.+++.++++       
T Consensus         2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~----~~--~~~~~~~~Dv~d~~~l~~~l~-------   67 (450)
T 1ff9_A            2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA----GV--QHSTPISLDVNDDAALDAEVA-------   67 (450)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTT----TC--TTEEEEECCTTCHHHHHHHHT-------
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHH----hc--CCceEEEeecCCHHHHHHHHc-------
Confidence            468899997 7999999999999999999999998765443322    11  136788999999988877764       


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      .+|+||||++.
T Consensus        68 ~~DvVIn~a~~   78 (450)
T 1ff9_A           68 KHDLVISLIPY   78 (450)
T ss_dssp             TSSEEEECCC-
T ss_pred             CCcEEEECCcc
Confidence            58999999985

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.64  E-value=1.5e-08  Score=85.81  Aligned_cols=82  Identities=22%  Similarity=0.277  Sum_probs=61.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|+++|||++ |+|+++++.|++.| +|++++|+.++++++.+++..... ... .+.+|+++.          .+
T Consensus       124 ~~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~-~~~-~~~~d~~~~----------~~  189 (287)
T 1nvt_A          124 GRVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLN-KKF-GEEVKFSGL----------DV  189 (287)
T ss_dssp             CCCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHT-CCH-HHHEEEECT----------TC
T ss_pred             CCcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcc-ccc-ceeEEEeeH----------HH
Confidence            46789999999997 99999999999999 999999998888887777654210 010 123444441          45


Q ss_pred             CCCCeeEEEEccCCCC
Q 025275          105 QGRPLNILINNAGIMA  120 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~  120 (255)
                      .++++|++|||+|...
T Consensus       190 ~~~~~DilVn~ag~~~  205 (287)
T 1nvt_A          190 DLDGVDIIINATPIGM  205 (287)
T ss_dssp             CCTTCCEEEECSCTTC
T ss_pred             hhCCCCEEEECCCCCC
Confidence            5678999999998653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.58  E-value=5.3e-08  Score=85.34  Aligned_cols=108  Identities=18%  Similarity=0.221  Sum_probs=73.4

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+++++++|+|+ |+||+++++.+...|++|++++|+.++++...+.+     +..   +.+|.++.+++.+++.     
T Consensus       163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~-----g~~---~~~~~~~~~~l~~~~~-----  228 (369)
T 2eez_A          163 GVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF-----GGR---VITLTATEANIKKSVQ-----  228 (369)
T ss_dssp             BBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----TTS---EEEEECCHHHHHHHHH-----
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc-----Cce---EEEecCCHHHHHHHHh-----
Confidence            477899999999 99999999999999999999999987655443322     222   4567788887777765     


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                        ..|++|++++.....                 .+..+.+..++.|+       +++.||++++..+
T Consensus       229 --~~DvVi~~~g~~~~~-----------------~~~li~~~~l~~mk-------~gg~iV~v~~~~g  270 (369)
T 2eez_A          229 --HADLLIGAVLVPGAK-----------------APKLVTRDMLSLMK-------EGAVIVDVAVDQG  270 (369)
T ss_dssp             --HCSEEEECCC------------------------CCSCHHHHTTSC-------TTCEEEECC----
T ss_pred             --CCCEEEECCCCCccc-----------------cchhHHHHHHHhhc-------CCCEEEEEecCCC
Confidence              479999999863210                 01223344555553       3689999998754

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.55  E-value=6.1e-07  Score=76.70  Aligned_cols=84  Identities=26%  Similarity=0.323  Sum_probs=66.2

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec---cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN---MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      ..++++|+++|+|+ ||+|++++..|++.|+ +|++++|+   .++.+++.+++.... +  +.+...++.+.+++...+
T Consensus       149 ~~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~-~--~~~~~~~~~~~~~l~~~l  224 (315)
T 3tnl_A          149 GHDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKT-D--CKAQLFDIEDHEQLRKEI  224 (315)
T ss_dssp             TCCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS-S--CEEEEEETTCHHHHHHHH
T ss_pred             CCCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhc-C--CceEEeccchHHHHHhhh
Confidence            46789999999998 7999999999999999 89999999   778888888877653 2  233345677766666555


Q ss_pred             HHHhcCCCCeeEEEEccCC
Q 025275          100 SEYNSQGRPLNILINNAGI  118 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~  118 (255)
                      .       ..|+|||+...
T Consensus       225 ~-------~aDiIINaTp~  236 (315)
T 3tnl_A          225 A-------ESVIFTNATGV  236 (315)
T ss_dssp             H-------TCSEEEECSST
T ss_pred             c-------CCCEEEECccC
Confidence            5       47999999863

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.55  E-value=1.5e-10  Score=103.92  Aligned_cols=46  Identities=22%  Similarity=0.279  Sum_probs=39.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVR   70 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~   70 (255)
                      .+.+.||+++|||++ +||+++|+.|+..|++|+++++++....+..
T Consensus       260 g~~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa  305 (488)
T 3ond_A          260 DVMIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDPICALQAT  305 (488)
T ss_dssp             CCCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCcccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            456899999999987 9999999999999999999999876654433

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.52  E-value=2.4e-07  Score=83.48  Aligned_cols=80  Identities=18%  Similarity=0.255  Sum_probs=61.9

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..++++++++|+|+ |++|+++++.|++. |++|++++|+.++++++.+.       ..+..+.+|++|.+++..+++  
T Consensus        18 ~~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-------~~~~~~~~D~~d~~~l~~~l~--   87 (467)
T 2axq_A           18 EGRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-------SGSKAISLDVTDDSALDKVLA--   87 (467)
T ss_dssp             -----CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-------GTCEEEECCTTCHHHHHHHHH--
T ss_pred             ccCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-------cCCcEEEEecCCHHHHHHHHc--
Confidence            35577899999997 99999999999998 67999999997766554432       135677899999888877775  


Q ss_pred             hcCCCCeeEEEEccCC
Q 025275          103 NSQGRPLNILINNAGI  118 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~  118 (255)
                           .+|+|||+++.
T Consensus        88 -----~~DvVIn~tp~   98 (467)
T 2axq_A           88 -----DNDVVISLIPY   98 (467)
T ss_dssp             -----TSSEEEECSCG
T ss_pred             -----CCCEEEECCch
Confidence                 58999999985

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.49  E-value=4.1e-07  Score=78.82  Aligned_cols=80  Identities=14%  Similarity=0.129  Sum_probs=60.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+|++|+||+++++.+...|++|++++|+.++++.. +++     +..   ..+|+++.+++.+.+.++...  
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~-~~~-----g~~---~~~d~~~~~~~~~~~~~~~~~--  237 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELF-RSI-----GGE---VFIDFTKEKDIVGAVLKATDG--  237 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHH-HHT-----TCC---EEEETTTCSCHHHHHHHHHTS--
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHH-HHc-----CCc---eEEecCccHhHHHHHHHHhCC--
Confidence            589999999999999999999999999999999988765332 222     222   224877555666667666544  


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|+++|.
T Consensus       238 ~~D~vi~~~g~  248 (347)
T 2hcy_A          238 GAHGVINVSVS  248 (347)
T ss_dssp             CEEEEEECSSC
T ss_pred             CCCEEEECCCc
Confidence            69999999983

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=98.45  E-value=6.3e-07  Score=77.26  Aligned_cols=159  Identities=13%  Similarity=-0.005  Sum_probs=97.8

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCC-------eEEEEEec----cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHH
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGV-------HVIMAVRN----MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRK   97 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~-------~Vi~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~   97 (255)
                      .++++||||+|.+|.+++..|+..|.       +|++.+++    .++++.....+...  ...+.   .|+....+...
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~--~~~~~---~~i~~~~~~~~   79 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDC--AFPLL---AGMTAHADPMT   79 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTT--TCTTE---EEEEEESSHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhh--ccccc---CcEEEecCcHH
Confidence            35799999999999999999999885       79999888    44444434444431  11111   24433223333


Q ss_pred             HHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275           98 FASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus        98 ~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      .++       ..|++|++||....+. .+   -.+.+..|+.....+++.+.++.       +..++||++|+......+
T Consensus        80 al~-------~aD~Vi~~ag~~~~~g-~~---r~dl~~~N~~i~~~i~~~i~~~~-------~p~a~ii~~SNPv~~~t~  141 (329)
T 1b8p_A           80 AFK-------DADVALLVGARPRGPG-ME---RKDLLEANAQIFTVQGKAIDAVA-------SRNIKVLVVGNPANTNAY  141 (329)
T ss_dssp             HTT-------TCSEEEECCCCCCCTT-CC---HHHHHHHHHHHHHHHHHHHHHHS-------CTTCEEEECSSSHHHHHH
T ss_pred             HhC-------CCCEEEEeCCCCCCCC-CC---HHHHHHHHHHHHHHHHHHHHHhc-------CCCeEEEEccCchHHHHH
Confidence            443       5899999999765432 22   23467888888888888877653       124699999987654422


Q ss_pred             ccCccCCCCCccc-CCCCccchHHhHHHHHHHHHHHHHHHh
Q 025275          178 SEGIRFDKINDES-AYNSFGAYGQSKLANILHAKELAKHLK  217 (255)
Q Consensus       178 ~~~~~~~~~~~~~-~~~~~~~Y~~sKaa~~~l~~~la~~~~  217 (255)
                      .-..       .. +++....|+.++.-...+.+.++..+.
T Consensus       142 ~~~~-------~~~~~p~~~v~g~t~Ld~~r~~~~la~~lg  175 (329)
T 1b8p_A          142 IAMK-------SAPSLPAKNFTAMLRLDHNRALSQIAAKTG  175 (329)
T ss_dssp             HHHH-------TCTTSCGGGEEECCHHHHHHHHHHHHHHHT
T ss_pred             HHHH-------HcCCCCHHHEEEeecHHHHHHHHHHHHHhC
Confidence            2100       00 122223466666544556666776664

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=98.42  E-value=4.3e-08  Score=89.73  Aligned_cols=96  Identities=20%  Similarity=0.198  Sum_probs=61.5

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc-
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS-  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~-  104 (255)
                      ++++|+++|||| ||+|++++..|++.|++|++++|+.++++++.+++     +.++.    ++.|   +       .+ 
T Consensus       361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~-----~~~~~----~~~d---l-------~~~  420 (523)
T 2o7s_A          361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAI-----GGKAL----SLTD---L-------DNY  420 (523)
T ss_dssp             -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHT-----TC-CE----ETTT---T-------TTC
T ss_pred             ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCcee----eHHH---h-------hhc
Confidence            467899999999 59999999999999999999999988777766554     22222    2222   1       11 


Q ss_pred             CCCCeeEEEEccCCCC-------CCCCCChHHHHHHHHHHHHHH
Q 025275          105 QGRPLNILINNAGIMA-------SPFMLSKDNIELQFATNHLGH  141 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~-------~~~~~~~~~~~~~~~~n~~~~  141 (255)
                      ..+.+|++|||+|...       +..+...+.+...+++|+.+.
T Consensus       421 ~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~  464 (523)
T 2o7s_A          421 HPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPR  464 (523)
T ss_dssp             --CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSS
T ss_pred             cccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCc
Confidence            1135899999998642       122344556666777777654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=98.42  E-value=3.3e-07  Score=79.20  Aligned_cols=80  Identities=15%  Similarity=0.219  Sum_probs=58.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+||+|+||..+++.+...|++|++++++.++++...+++     +.. .  .+|.++.+++.+.+.++..  +
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~-----g~~-~--~~d~~~~~~~~~~~~~~~~--~  224 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF-----GFD-D--AFNYKEESDLTAALKRCFP--N  224 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS-----CCS-E--EEETTSCSCSHHHHHHHCT--T
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCc-e--EEecCCHHHHHHHHHHHhC--C
Confidence            5899999999999999999999999999999999876654433222     222 1  2366654445555555532  5


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++|+|+|
T Consensus       225 ~~d~vi~~~g  234 (345)
T 2j3h_A          225 GIDIYFENVG  234 (345)
T ss_dssp             CEEEEEESSC
T ss_pred             CCcEEEECCC
Confidence            7999999998

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=98.41  E-value=9.8e-07  Score=75.92  Aligned_cols=80  Identities=14%  Similarity=0.204  Sum_probs=58.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+||+|+||.++++.+...|++|++++++.++++... ++     +..   ..+|.++.+..+.+.+....  .
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~-----g~~---~~~d~~~~~~~~~i~~~~~~--~  213 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR-KL-----GCH---HTINYSTQDFAEVVREITGG--K  213 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH-----TCS---EEEETTTSCHHHHHHHHHTT--C
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCC---EEEECCCHHHHHHHHHHhCC--C
Confidence            5789999999999999999999999999999999876655442 22     222   12477665544444443321  3


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|+|+|.
T Consensus       214 ~~d~vi~~~g~  224 (333)
T 1wly_A          214 GVDVVYDSIGK  224 (333)
T ss_dssp             CEEEEEECSCT
T ss_pred             CCeEEEECCcH
Confidence            69999999984

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.40  E-value=7.9e-07  Score=76.31  Aligned_cols=79  Identities=13%  Similarity=0.196  Sum_probs=58.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++|||||+|+||.++++.+...|++|++++++.++++...+ +     +..   ..+|.++++..+.+.+...  ..
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~-----g~~---~~~~~~~~~~~~~~~~~~~--~~  208 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-A-----GAW---QVINYREEDLVERLKEITG--GK  208 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-H-----TCS---EEEETTTSCHHHHHHHHTT--TC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c-----CCC---EEEECCCccHHHHHHHHhC--CC
Confidence            58999999999999999999999999999999998766544432 2     222   1247776655554444332  13


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++|+|+|
T Consensus       209 ~~D~vi~~~g  218 (327)
T 1qor_A          209 KVRVVYDSVG  218 (327)
T ss_dssp             CEEEEEECSC
T ss_pred             CceEEEECCc
Confidence            6999999998

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=98.38  E-value=5e-06  Score=71.48  Aligned_cols=120  Identities=18%  Similarity=0.149  Sum_probs=77.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++++||||+|.+|..++..|+++|  .+|++.+++++  +.....+.......++..    +.+.++...+++       
T Consensus         9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~----~~~t~d~~~al~-------   75 (326)
T 1smk_A            9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRG----FLGQQQLEAALT-------   75 (326)
T ss_dssp             EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEE----EESHHHHHHHHT-------
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEE----EeCCCCHHHHcC-------
Confidence            579999999999999999999998  68999988765  222223332211112222    233444555554       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      ..|++|+++|....+.. +.+   +.+..|+.+...+++.+.++..        .+.|+++|.....
T Consensus        76 gaDvVi~~ag~~~~~g~-~r~---dl~~~N~~~~~~i~~~i~~~~p--------~~~viv~SNPv~~  130 (326)
T 1smk_A           76 GMDLIIVPAGVPRKPGM-TRD---DLFKINAGIVKTLCEGIAKCCP--------RAIVNLISNPVNS  130 (326)
T ss_dssp             TCSEEEECCCCCCCSSC-CCS---HHHHHHHHHHHHHHHHHHHHCT--------TSEEEECCSSHHH
T ss_pred             CCCEEEEcCCcCCCCCC-CHH---HHHHHHHHHHHHHHHHHHhhCC--------CeEEEEECCchHH
Confidence            58999999997643322 222   3478888888888888776543        3466666665554

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.37  E-value=1.4e-06  Score=65.27  Aligned_cols=75  Identities=17%  Similarity=0.178  Sum_probs=57.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +++.++|+|+ |.+|.++++.|.++|++|++++++++..+...    ..    .+.++..|.++++.+..+      ...
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~----~~----~~~~~~gd~~~~~~l~~~------~~~   69 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLE----DE----GFDAVIADPTDESFYRSL------DLE   69 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH----HT----TCEEEECCTTCHHHHHHS------CCT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH----HC----CCcEEECCCCCHHHHHhC------Ccc
Confidence            3467999998 77999999999999999999999876644433    22    356788999998876543      224


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ..|++|.+.+
T Consensus        70 ~~d~vi~~~~   79 (141)
T 3llv_A           70 GVSAVLITGS   79 (141)
T ss_dssp             TCSEEEECCS
T ss_pred             cCCEEEEecC
Confidence            6899998775

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.37  E-value=7.6e-07  Score=74.62  Aligned_cols=77  Identities=14%  Similarity=0.262  Sum_probs=58.1

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|+++|+|+ ||+|+++++.|++.|++|++++|+.++++++.+++...  + .+.  ..|+   ++       +.+
T Consensus       115 ~~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~--~-~~~--~~~~---~~-------~~~  178 (271)
T 1nyt_A          115 FIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT--G-SIQ--ALSM---DE-------LEG  178 (271)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG--S-SEE--ECCS---GG-------GTT
T ss_pred             cCcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhcc--C-Cee--EecH---HH-------hcc
Confidence            5678999999998 79999999999999999999999988877777665432  1 221  1333   11       112


Q ss_pred             CCCCeeEEEEccCCC
Q 025275          105 QGRPLNILINNAGIM  119 (255)
Q Consensus       105 ~~g~id~lv~~ag~~  119 (255)
                        +.+|++|||++..
T Consensus       179 --~~~DivVn~t~~~  191 (271)
T 1nyt_A          179 --HEFDLIINATSSG  191 (271)
T ss_dssp             --CCCSEEEECCSCG
T ss_pred             --CCCCEEEECCCCC
Confidence              5799999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.35  E-value=4.7e-07  Score=67.70  Aligned_cols=77  Identities=14%  Similarity=0.076  Sum_probs=55.8

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++++++|+|+ |.+|..+++.|.+.|++|++++++.+..+.    +...    ....+..|.++.+.+..+      ..
T Consensus         4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~----~~~~----~~~~~~~d~~~~~~l~~~------~~   68 (144)
T 2hmt_A            4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNA----YASY----ATHAVIANATEENELLSL------GI   68 (144)
T ss_dssp             --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHT----TTTT----CSEEEECCTTCHHHHHTT------TG
T ss_pred             CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHh----CCEEEEeCCCCHHHHHhc------CC
Confidence            45678999998 999999999999999999999988654322    2111    235677899987655433      12


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      ..+|++|++++.
T Consensus        69 ~~~d~vi~~~~~   80 (144)
T 2hmt_A           69 RNFEYVIVAIGA   80 (144)
T ss_dssp             GGCSEEEECCCS
T ss_pred             CCCCEEEECCCC
Confidence            368999999873

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=98.33  E-value=1.6e-06  Score=75.30  Aligned_cols=80  Identities=14%  Similarity=0.189  Sum_probs=58.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+||+|+||.++++.+...|++|++++++.++++.. +++     +..   ..+|.++.+..+.+.+.. . .+
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~-----g~~---~~~~~~~~~~~~~~~~~~-~-~~  230 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKL-----GAA---AGFNYKKEDFSEATLKFT-K-GA  230 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH-----TCS---EEEETTTSCHHHHHHHHT-T-TS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCc---EEEecCChHHHHHHHHHh-c-CC
Confidence            589999999999999999999999999999999987765544 333     222   224666654444443322 1 13


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|+|+|.
T Consensus       231 ~~d~vi~~~G~  241 (354)
T 2j8z_A          231 GVNLILDCIGG  241 (354)
T ss_dssp             CEEEEEESSCG
T ss_pred             CceEEEECCCc
Confidence            69999999984

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=98.33  E-value=1.2e-06  Score=75.51  Aligned_cols=79  Identities=15%  Similarity=0.323  Sum_probs=57.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+||+|+||..+++.+...|++|++++++.++++...+++     +.. .  .+|.++++..+.+ .+..  .+
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~-----g~~-~--~~~~~~~~~~~~~-~~~~--~~  217 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL-----GFD-G--AIDYKNEDLAAGL-KREC--PK  217 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT-----CCS-E--EEETTTSCHHHHH-HHHC--TT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCC-E--EEECCCHHHHHHH-HHhc--CC
Confidence            5899999999999999999999999999999999887655443332     222 1  2366665433333 3332  34


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++|+|+|
T Consensus       218 ~~d~vi~~~g  227 (336)
T 4b7c_A          218 GIDVFFDNVG  227 (336)
T ss_dssp             CEEEEEESSC
T ss_pred             CceEEEECCC
Confidence            7999999998

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=98.31  E-value=1.1e-06  Score=76.38  Aligned_cols=79  Identities=15%  Similarity=0.220  Sum_probs=56.7

Q ss_pred             CC--cEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           28 TG--LTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        28 ~~--k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .|  +++||+||+|+||..+++.+...|+ +|++++++.++++...+++     +..   ..+|.++.+ +.+.+.+...
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~-----g~~---~~~d~~~~~-~~~~~~~~~~  228 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL-----GFD---AAINYKKDN-VAEQLRESCP  228 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS-----CCS---EEEETTTSC-HHHHHHHHCT
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc-----CCc---eEEecCchH-HHHHHHHhcC
Confidence            46  8999999999999999999999999 9999999876654443322     222   224776643 3333443332


Q ss_pred             CCCCeeEEEEccC
Q 025275          105 QGRPLNILINNAG  117 (255)
Q Consensus       105 ~~g~id~lv~~ag  117 (255)
                        +++|++|+|+|
T Consensus       229 --~~~d~vi~~~G  239 (357)
T 2zb4_A          229 --AGVDVYFDNVG  239 (357)
T ss_dssp             --TCEEEEEESCC
T ss_pred             --CCCCEEEECCC
Confidence              26999999998

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=98.30  E-value=4e-06  Score=72.07  Aligned_cols=80  Identities=18%  Similarity=0.306  Sum_probs=55.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+||+|+||...++.+...|++|++++++.++++.. +++     +.. ..  +|.++++..+.+.+ ... ..
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~-----ga~-~~--~~~~~~~~~~~~~~-~~~-~~  216 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIA-KEY-----GAE-YL--INASKEDILRQVLK-FTN-GK  216 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT-----TCS-EE--EETTTSCHHHHHHH-HTT-TS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc-----CCc-EE--EeCCCchHHHHHHH-HhC-CC
Confidence            589999999999999999999999999999999987765432 222     322 12  35555443333333 221 23


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|+|+|.
T Consensus       217 g~D~vid~~g~  227 (334)
T 3qwb_A          217 GVDASFDSVGK  227 (334)
T ss_dssp             CEEEEEECCGG
T ss_pred             CceEEEECCCh
Confidence            69999999984

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.30  E-value=1.9e-06  Score=75.18  Aligned_cols=86  Identities=16%  Similarity=0.218  Sum_probs=59.3

Q ss_pred             CcccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Q 025275           16 STAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASV   95 (255)
Q Consensus        16 ~~~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si   95 (255)
                      +.++.+.+.+.-+.++|+|.|| |++|+.+++.|++ .++|.+.+++.++++..         ...+..+.+|++|.+++
T Consensus         3 ~~~~~~~~~~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~---------~~~~~~~~~d~~d~~~l   71 (365)
T 3abi_A            3 HKVHHHHHHIEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKV---------KEFATPLKVDASNFDKL   71 (365)
T ss_dssp             -------------CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHH---------TTTSEEEECCTTCHHHH
T ss_pred             cccccccccccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHH---------hccCCcEEEecCCHHHH
Confidence            4455666777777788999998 9999999999976 57899999987665443         22456788999999998


Q ss_pred             HHHHHHHhcCCCCeeEEEEccCCC
Q 025275           96 RKFASEYNSQGRPLNILINNAGIM  119 (255)
Q Consensus        96 ~~~~~~~~~~~g~id~lv~~ag~~  119 (255)
                      .++++       ..|+||++++..
T Consensus        72 ~~~~~-------~~DvVi~~~p~~   88 (365)
T 3abi_A           72 VEVMK-------EFELVIGALPGF   88 (365)
T ss_dssp             HHHHT-------TCSEEEECCCGG
T ss_pred             HHHHh-------CCCEEEEecCCc
Confidence            88877       479999998743

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.29  E-value=1.9e-06  Score=72.63  Aligned_cols=81  Identities=16%  Similarity=0.263  Sum_probs=62.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.+++.+++....++..+.  ..+..+   +...+.   
T Consensus       123 ~~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~--~~~~~~---l~~~l~---  193 (283)
T 3jyo_A          123 PNAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV--GVDARG---IEDVIA---  193 (283)
T ss_dssp             TTCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEE--EECSTT---HHHHHH---
T ss_pred             cCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEE--EcCHHH---HHHHHh---
Confidence            4678999999998 7999999999999998 69999999999998888887653333333  334433   344444   


Q ss_pred             cCCCCeeEEEEccCC
Q 025275          104 SQGRPLNILINNAGI  118 (255)
Q Consensus       104 ~~~g~id~lv~~ag~  118 (255)
                          ..|+|||+...
T Consensus       194 ----~~DiVInaTp~  204 (283)
T 3jyo_A          194 ----AADGVVNATPM  204 (283)
T ss_dssp             ----HSSEEEECSST
T ss_pred             ----cCCEEEECCCC
Confidence                36999999854

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=98.28  E-value=2.4e-06  Score=74.18  Aligned_cols=79  Identities=16%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|++++|+||+|+||.++++.+...|++|++++++.++++. .++   .  +..   ..+|.++++..+.+.+...  .+
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~-~~~---~--ga~---~~~d~~~~~~~~~~~~~~~--~~  238 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKI-VLQ---N--GAH---EVFNHREVNYIDKIKKYVG--EK  238 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHH---T--TCS---EEEETTSTTHHHHHHHHHC--TT
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHH-HHH---c--CCC---EEEeCCCchHHHHHHHHcC--CC
Confidence            58899999999999999999999999999999998776542 222   2  222   1246766554444433321  23


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++|+|+|
T Consensus       239 ~~D~vi~~~G  248 (351)
T 1yb5_A          239 GIDIIIEMLA  248 (351)
T ss_dssp             CEEEEEESCH
T ss_pred             CcEEEEECCC
Confidence            6999999998

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=98.24  E-value=6.1e-06  Score=70.41  Aligned_cols=84  Identities=19%  Similarity=0.303  Sum_probs=63.2

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec---cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN---MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      ..++++|+++|+|+ ||.|++++..|++.|+ +|.+++|+   .++.+++.+++.... +..+  ...+..+.+.....+
T Consensus       143 ~~~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~-~~~v--~~~~~~~l~~~~~~l  218 (312)
T 3t4e_A          143 GFDMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENT-DCVV--TVTDLADQHAFTEAL  218 (312)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHS-SCEE--EEEETTCHHHHHHHH
T ss_pred             CCCcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhcc-Ccce--EEechHhhhhhHhhc
Confidence            46788999999997 8999999999999998 79999999   777888888876653 2223  334566643334444


Q ss_pred             HHHhcCCCCeeEEEEccCC
Q 025275          100 SEYNSQGRPLNILINNAGI  118 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~  118 (255)
                      .       ..|+|||+...
T Consensus       219 ~-------~~DiIINaTp~  230 (312)
T 3t4e_A          219 A-------SADILTNGTKV  230 (312)
T ss_dssp             H-------HCSEEEECSST
T ss_pred             c-------CceEEEECCcC
Confidence            4       36999999764

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=98.20  E-value=5e-06  Score=71.91  Aligned_cols=80  Identities=16%  Similarity=0.206  Sum_probs=56.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .++++||+|++|+||..+++.+... |++|+++++++++++.. +++     +...   .+|.++.+..+. +.++... 
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~-~~~-----g~~~---~~~~~~~~~~~~-~~~~~~~-  238 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA-KRA-----GADY---VINASMQDPLAE-IRRITES-  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH-HHH-----TCSE---EEETTTSCHHHH-HHHHTTT-
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh-----CCCE---EecCCCccHHHH-HHHHhcC-
Confidence            5789999999999999999999999 99999999987765443 232     2221   236665443332 3333221 


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +++|++|+|+|.
T Consensus       239 ~~~d~vi~~~g~  250 (347)
T 1jvb_A          239 KGVDAVIDLNNS  250 (347)
T ss_dssp             SCEEEEEESCCC
T ss_pred             CCceEEEECCCC
Confidence            479999999984

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=98.16  E-value=7.3e-06  Score=71.08  Aligned_cols=79  Identities=19%  Similarity=0.328  Sum_probs=57.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+||+|+||..+++.+...|++|++++++.++++... ++     +.. ..  +|.++++..+.+.+ ..  .+
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~-~~--~~~~~~~~~~~~~~-~~--~~  234 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RL-----GAK-RG--INYRSEDFAAVIKA-ET--GQ  234 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH-----TCS-EE--EETTTSCHHHHHHH-HH--SS
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hc-----CCC-EE--EeCCchHHHHHHHH-Hh--CC
Confidence            5889999999999999999999999999999999987755443 22     322 12  35555443333333 32  45


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|+|+|.
T Consensus       235 g~Dvvid~~g~  245 (353)
T 4dup_A          235 GVDIILDMIGA  245 (353)
T ss_dssp             CEEEEEESCCG
T ss_pred             CceEEEECCCH
Confidence            79999999984

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=98.14  E-value=3.5e-06  Score=73.49  Aligned_cols=76  Identities=20%  Similarity=0.212  Sum_probs=53.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc---chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM---AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +++|+++||+|+ |++|..+++.+...|++|++++++.   ++.+ ..+++     +.  ..+  | .+ + +.+.+.+.
T Consensus       178 ~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~-~~~~~-----ga--~~v--~-~~-~-~~~~~~~~  243 (366)
T 2cdc_A          178 TLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQT-VIEET-----KT--NYY--N-SS-N-GYDKLKDS  243 (366)
T ss_dssp             SSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHH-HHHHH-----TC--EEE--E-CT-T-CSHHHHHH
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHH-HHHHh-----CC--cee--c-hH-H-HHHHHHHh
Confidence            345899999999 9999999999999999999999987   5542 22332     32  223  5 44 2 22222221


Q ss_pred             hcCCCCeeEEEEccCC
Q 025275          103 NSQGRPLNILINNAGI  118 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~  118 (255)
                       .  +++|++|+++|.
T Consensus       244 -~--~~~d~vid~~g~  256 (366)
T 2cdc_A          244 -V--GKFDVIIDATGA  256 (366)
T ss_dssp             -H--CCEEEEEECCCC
T ss_pred             -C--CCCCEEEECCCC
Confidence             2  579999999985

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.10  E-value=1.9e-05  Score=59.98  Aligned_cols=77  Identities=17%  Similarity=0.141  Sum_probs=56.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHH-HHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKF-ASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~-~~~~~~~  105 (255)
                      .++.++|.|+ |.+|+.++++|.+.|++|++++++. +..+...+..     ...+.++..|.++++.+..+ ++     
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~-----   70 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGID-----   70 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTT-----
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcChh-----
Confidence            3467888986 9999999999999999999999974 3333333221     22477889999998866554 22     


Q ss_pred             CCCeeEEEEccC
Q 025275          106 GRPLNILINNAG  117 (255)
Q Consensus       106 ~g~id~lv~~ag  117 (255)
                        ..|.+|.+.+
T Consensus        71 --~ad~vi~~~~   80 (153)
T 1id1_A           71 --RCRAILALSD   80 (153)
T ss_dssp             --TCSEEEECSS
T ss_pred             --hCCEEEEecC
Confidence              5799998775

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.09  E-value=7e-06  Score=68.73  Aligned_cols=77  Identities=14%  Similarity=0.205  Sum_probs=57.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++...  + .+..  +|+.          ++.+
T Consensus       115 ~~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~--~-~~~~--~~~~----------~~~~  178 (272)
T 1p77_A          115 WLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY--G-NIQA--VSMD----------SIPL  178 (272)
T ss_dssp             CCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG--S-CEEE--EEGG----------GCCC
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcccc--C-CeEE--eeHH----------Hhcc
Confidence            5678999999998 79999999999999999999999998888887776432  1 2222  2321          1111


Q ss_pred             CCCCeeEEEEccCCC
Q 025275          105 QGRPLNILINNAGIM  119 (255)
Q Consensus       105 ~~g~id~lv~~ag~~  119 (255)
                        +..|++||+++..
T Consensus       179 --~~~DivIn~t~~~  191 (272)
T 1p77_A          179 --QTYDLVINATSAG  191 (272)
T ss_dssp             --SCCSEEEECCCC-
T ss_pred             --CCCCEEEECCCCC
Confidence              4799999999864

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=98.09  E-value=1.3e-05  Score=69.11  Aligned_cols=79  Identities=18%  Similarity=0.309  Sum_probs=57.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .++++||+|++|++|..+++.+...|++|++++++.++++... ++     +.. ..  +|.++++ +.+.+.++.. ..
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~-----ga~-~~--~d~~~~~-~~~~~~~~~~-~~  234 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-AL-----GAD-ET--VNYTHPD-WPKEVRRLTG-GK  234 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH-----TCS-EE--EETTSTT-HHHHHHHHTT-TT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc-----CCC-EE--EcCCccc-HHHHHHHHhC-CC
Confidence            5789999999999999999999999999999999877655442 22     222 12  4776653 3333333322 23


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++|+++|
T Consensus       235 ~~d~vi~~~g  244 (343)
T 2eih_A          235 GADKVVDHTG  244 (343)
T ss_dssp             CEEEEEESSC
T ss_pred             CceEEEECCC
Confidence            6999999998

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=98.08  E-value=3.9e-05  Score=65.50  Aligned_cols=156  Identities=15%  Similarity=0.170  Sum_probs=91.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEe--ccchHHHHHHHHHhh--CCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVR--NMAAGKDVREAIVKE--IPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r--~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++||||+|++|.+++..|+..|.  ++.+.++  +.++++.....+...  ..+..+.+...|    +++...+     
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al-----   72 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRII-----   72 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGG-----
T ss_pred             EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHh-----
Confidence            689999999999999999999884  5888888  654443322223221  111122222211    1112222     


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                        ...|++||+||....+. .+   -.+.+..|+.+...+++++.++- +        +.|+++|.......+.-.    
T Consensus        73 --~gaD~Vi~~Ag~~~~~g-~~---r~dl~~~N~~i~~~i~~~i~~~~-~--------~~vlv~SNPv~~~t~~~~----  133 (313)
T 1hye_A           73 --DESDVVIITSGVPRKEG-MS---RMDLAKTNAKIVGKYAKKIAEIC-D--------TKIFVITNPVDVMTYKAL----  133 (313)
T ss_dssp             --TTCSEEEECCSCCCCTT-CC---HHHHHHHHHHHHHHHHHHHHHHC-C--------CEEEECSSSHHHHHHHHH----
T ss_pred             --CCCCEEEECCCCCCCCC-Cc---HHHHHHHHHHHHHHHHHHHHHhC-C--------eEEEEecCcHHHHHHHHH----
Confidence              36899999999764332 22   23558889999888888887654 3        467777776654321100    


Q ss_pred             CCCcccCCCCccchHH-hHHHHHHHHHHHHHHHh
Q 025275          185 KINDESAYNSFGAYGQ-SKLANILHAKELAKHLK  217 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~-sKaa~~~l~~~la~~~~  217 (255)
                         ...+++....++. +..-...+.+.++..+.
T Consensus       134 ---k~~~~p~~rviG~gt~LD~~r~~~~la~~lg  164 (313)
T 1hye_A          134 ---VDSKFERNQVFGLGTHLDSLRFKVAIAKFFG  164 (313)
T ss_dssp             ---HHHCCCTTSEEECTTHHHHHHHHHHHHHHHT
T ss_pred             ---HhhCcChhcEEEeCccHHHHHHHHHHHHHhC
Confidence               0012333345555 44444455666666664

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=98.07  E-value=2.3e-05  Score=67.81  Aligned_cols=79  Identities=13%  Similarity=0.091  Sum_probs=54.6

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++++||+||+|+||...++.+...|++|++++++.++++.+. ++     +.. ..  +|.++++..+.+.+....  .+
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~~-----Ga~-~~--~~~~~~~~~~~v~~~~~~--~g  233 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DI-----GAA-HV--LNEKAPDFEATLREVMKA--EQ  233 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH-HH-----TCS-EE--EETTSTTHHHHHHHHHHH--HC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCC-EE--EECCcHHHHHHHHHHhcC--CC
Confidence            489999999999999999999999999999999888765443 33     322 22  244443333332222211  26


Q ss_pred             eeEEEEccCC
Q 025275          109 LNILINNAGI  118 (255)
Q Consensus       109 id~lv~~ag~  118 (255)
                      +|++|+|+|.
T Consensus       234 ~D~vid~~g~  243 (349)
T 3pi7_A          234 PRIFLDAVTG  243 (349)
T ss_dssp             CCEEEESSCH
T ss_pred             CcEEEECCCC
Confidence            9999999983

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=98.07  E-value=1.5e-05  Score=68.65  Aligned_cols=80  Identities=18%  Similarity=0.219  Sum_probs=56.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+||+|+||...++.+...|++|++++++.++++...+ +     +... .  +|.++.+..+.+.+ ... ..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l-----ga~~-~--~~~~~~~~~~~~~~-~~~-~~  212 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR-L-----GAAY-V--IDTSTAPLYETVME-LTN-GI  212 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-H-----TCSE-E--EETTTSCHHHHHHH-HTT-TS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-C-----CCcE-E--EeCCcccHHHHHHH-HhC-CC
Confidence            58999999999999999999999999999999999887654433 2     3221 2  35555443333333 221 23


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|+|+|.
T Consensus       213 g~Dvvid~~g~  223 (340)
T 3gms_A          213 GADAAIDSIGG  223 (340)
T ss_dssp             CEEEEEESSCH
T ss_pred             CCcEEEECCCC
Confidence            69999999984

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=98.05  E-value=1.7e-05  Score=65.46  Aligned_cols=82  Identities=13%  Similarity=0.278  Sum_probs=66.5

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc-------------------chHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM-------------------AAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++++|+|.|+ ||+|..+++.|++.|. ++.+++++.                   .+.+...+.+.+..|+.++..+.
T Consensus        29 l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  107 (249)
T 1jw9_B           29 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  107 (249)
T ss_dssp             HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence            56789999996 6999999999999997 899999987                   78888888888877777777777


Q ss_pred             eCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           87 LDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        87 ~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      .++++ +.+..+++       ..|+||.+.+
T Consensus       108 ~~~~~-~~~~~~~~-------~~DvVi~~~d  130 (249)
T 1jw9_B          108 ALLDD-AELAALIA-------EHDLVLDCTD  130 (249)
T ss_dssp             SCCCH-HHHHHHHH-------TSSEEEECCS
T ss_pred             ccCCH-hHHHHHHh-------CCCEEEEeCC
Confidence            77764 44555554       5799998874

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=98.04  E-value=1.5e-05  Score=68.18  Aligned_cols=80  Identities=16%  Similarity=0.271  Sum_probs=56.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+||+|++|...++.+...|++|++++++.++++... ++     +.. ..  +|.++.+..+.+.+.. . ..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~-----Ga~-~~--~~~~~~~~~~~~~~~~-~-~~  208 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-AL-----GAW-ET--IDYSHEDVAKRVLELT-D-GK  208 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HH-----TCS-EE--EETTTSCHHHHHHHHT-T-TC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCC-EE--EeCCCccHHHHHHHHh-C-CC
Confidence            5899999999999999999999999999999999877655433 22     322 22  3555544344333322 1 23


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|+|+|.
T Consensus       209 g~Dvvid~~g~  219 (325)
T 3jyn_A          209 KCPVVYDGVGQ  219 (325)
T ss_dssp             CEEEEEESSCG
T ss_pred             CceEEEECCCh
Confidence            69999999984

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.03  E-value=1.7e-05  Score=58.71  Aligned_cols=75  Identities=17%  Similarity=0.283  Sum_probs=54.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++.++|+|+ |.+|..+++.|.+.|++|++++++++..+..    ....   .+.++..|.++.+.+...      ....
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~----~~~~---~~~~~~~d~~~~~~l~~~------~~~~   69 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKA----SAEI---DALVINGDCTKIKTLEDA------GIED   69 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----HHHC---SSEEEESCTTSHHHHHHT------TTTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHH----HHhc---CcEEEEcCCCCHHHHHHc------Cccc
Confidence            357889987 9999999999999999999999987654333    2221   345677899887654321      1236


Q ss_pred             eeEEEEccC
Q 025275          109 LNILINNAG  117 (255)
Q Consensus       109 id~lv~~ag  117 (255)
                      .|++|.+.+
T Consensus        70 ~d~vi~~~~   78 (140)
T 1lss_A           70 ADMYIAVTG   78 (140)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEEeeC
Confidence            899999875

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.00  E-value=4.2e-05  Score=64.99  Aligned_cols=119  Identities=13%  Similarity=0.081  Sum_probs=75.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEe--ccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVR--NMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r--~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++||||+|.+|.+++..|+..|.  ++.+.++  +.++++.....+..... ...+.+.. +  +.+    .+      
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~~~----a~------   68 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--GYE----DT------   68 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--CGG----GG------
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--CHH----Hh------
Confidence            699999999999999999999885  6888988  66554433333322110 12223222 2  221    12      


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                       ...|++|++||....+. .+.   .+.+..|+.....+++.+.++-        ..+.|+++|......
T Consensus        69 -~~aDvVi~~ag~~~~~g-~~r---~dl~~~N~~i~~~i~~~i~~~~--------p~~~viv~SNPv~~~  125 (303)
T 1o6z_A           69 -AGSDVVVITAGIPRQPG-QTR---IDLAGDNAPIMEDIQSSLDEHN--------DDYISLTTSNPVDLL  125 (303)
T ss_dssp             -TTCSEEEECCCCCCCTT-CCH---HHHHHHHHHHHHHHHHHHHTTC--------SCCEEEECCSSHHHH
T ss_pred             -CCCCEEEEcCCCCCCCC-CCH---HHHHHHHHHHHHHHHHHHHHHC--------CCcEEEEeCChHHHH
Confidence             26899999999764432 222   3457888888888877776542        245677766665443

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.95  E-value=4.1e-05  Score=66.01  Aligned_cols=79  Identities=27%  Similarity=0.367  Sum_probs=54.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+||+|+||...++.+...|++|++++++.++.+... ++     +.. ..+  |.. . ++...+.+... ..
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~-----ga~-~v~--~~~-~-~~~~~v~~~~~-~~  226 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVK-SV-----GAD-IVL--PLE-E-GWAKAVREATG-GA  226 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HH-----TCS-EEE--ESS-T-THHHHHHHHTT-TS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hc-----CCc-EEe--cCc-h-hHHHHHHHHhC-CC
Confidence            5899999999999999999999999999999999887764333 33     222 223  333 2 23333333321 12


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|+|+|.
T Consensus       227 g~Dvvid~~g~  237 (342)
T 4eye_A          227 GVDMVVDPIGG  237 (342)
T ss_dssp             CEEEEEESCC-
T ss_pred             CceEEEECCch
Confidence            69999999984

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.94  E-value=1.4e-05  Score=67.76  Aligned_cols=78  Identities=21%  Similarity=0.189  Sum_probs=55.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .++++++++|+|+ ||+|++++..|++.|+ +|++++|+.++++++.+++...  ..  ...     +.+++..      
T Consensus       137 ~~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~--~~--~~~-----~~~~~~~------  200 (297)
T 2egg_A          137 ITLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDER--RS--AYF-----SLAEAET------  200 (297)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSS--SC--CEE-----CHHHHHH------
T ss_pred             CCCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhc--cC--cee-----eHHHHHh------
Confidence            4678999999998 7899999999999998 8999999988877666554221  00  111     2222222      


Q ss_pred             cCCCCeeEEEEccCCC
Q 025275          104 SQGRPLNILINNAGIM  119 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~  119 (255)
                       .....|+||++++..
T Consensus       201 -~~~~aDivIn~t~~~  215 (297)
T 2egg_A          201 -RLAEYDIIINTTSVG  215 (297)
T ss_dssp             -TGGGCSEEEECSCTT
T ss_pred             -hhccCCEEEECCCCC
Confidence             223689999999854

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.91  E-value=2.6e-05  Score=67.99  Aligned_cols=75  Identities=13%  Similarity=0.186  Sum_probs=54.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++||+|+ |+||...++.+...|++|++++++.++.+...+++     +.. ..  +|..+.+.+.    ++   .+
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l-----Ga~-~v--~~~~~~~~~~----~~---~~  250 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF-----GAD-SF--LVSRDQEQMQ----AA---AG  250 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS-----CCS-EE--EETTCHHHHH----HT---TT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----CCc-eE--EeccCHHHHH----Hh---hC
Confidence            6899999996 99999999999999999999999887765443232     322 12  3666654332    22   24


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|.++|.
T Consensus       251 ~~D~vid~~g~  261 (366)
T 1yqd_A          251 TLDGIIDTVSA  261 (366)
T ss_dssp             CEEEEEECCSS
T ss_pred             CCCEEEECCCc
Confidence            79999999985

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.91  E-value=1.4e-05  Score=71.56  Aligned_cols=84  Identities=21%  Similarity=0.327  Sum_probs=55.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEE--eCCC---------CHHHHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAME--LDVS---------SLASVR   96 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~Dl~---------~~~si~   96 (255)
                      .|+++||+||+|+||...++.+...|++|++++++.++++.+ +++     +....+-.  .|+.         +.++++
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~-~~l-----Ga~~~i~~~~~~~~~~~~~~~~~~~~~~~  293 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAV-RAL-----GCDLVINRAELGITDDIADDPRRVVETGR  293 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT-----TCCCEEEHHHHTCCTTGGGCHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-Hhc-----CCCEEEecccccccccccccccccchhhh
Confidence            589999999999999999999999999999999877665443 222     32222211  1221         122333


Q ss_pred             HHHHHHhcC-CCCeeEEEEccC
Q 025275           97 KFASEYNSQ-GRPLNILINNAG  117 (255)
Q Consensus        97 ~~~~~~~~~-~g~id~lv~~ag  117 (255)
                      .+.+++.+. .+++|++|+++|
T Consensus       294 ~~~~~v~~~~g~g~Dvvid~~G  315 (447)
T 4a0s_A          294 KLAKLVVEKAGREPDIVFEHTG  315 (447)
T ss_dssp             HHHHHHHHHHSSCCSEEEECSC
T ss_pred             HHHHHHHHHhCCCceEEEECCC
Confidence            444444433 246999999998

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.89  E-value=6.4e-05  Score=63.18  Aligned_cols=76  Identities=17%  Similarity=0.287  Sum_probs=58.3

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..++++|+++|+|+ ||+|++++..|++.|+ +|++.+|+.++.+++.+++...  + .+.....  .+   +       
T Consensus       121 ~~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~--~-~~~~~~~--~~---l-------  184 (281)
T 3o8q_A          121 QVLLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY--G-EVKAQAF--EQ---L-------  184 (281)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGG--S-CEEEEEG--GG---C-------
T ss_pred             CCCccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhcc--C-CeeEeeH--HH---h-------
Confidence            45688999999998 6999999999999996 8999999999888888887543  1 2333322  11   1       


Q ss_pred             hcCCCCeeEEEEccCC
Q 025275          103 NSQGRPLNILINNAGI  118 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~  118 (255)
                      .   ...|+|||+...
T Consensus       185 ~---~~aDiIInaTp~  197 (281)
T 3o8q_A          185 K---QSYDVIINSTSA  197 (281)
T ss_dssp             C---SCEEEEEECSCC
T ss_pred             c---CCCCEEEEcCcC
Confidence            1   368999999864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.88  E-value=2.2e-05  Score=59.83  Aligned_cols=81  Identities=10%  Similarity=0.102  Sum_probs=56.3

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +.....+++++|.|+ |.+|..+++.|.+.|++|++++|+++..+...+       ......+..|.++.+.+..+    
T Consensus        13 ~~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~-------~~g~~~~~~d~~~~~~l~~~----   80 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS-------EFSGFTVVGDAAEFETLKEC----   80 (155)
T ss_dssp             ----CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT-------TCCSEEEESCTTSHHHHHTT----
T ss_pred             hhcccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh-------cCCCcEEEecCCCHHHHHHc----
Confidence            345567889999986 999999999999999999999999876433210       11245677788886544321    


Q ss_pred             hcCCCCeeEEEEccC
Q 025275          103 NSQGRPLNILINNAG  117 (255)
Q Consensus       103 ~~~~g~id~lv~~ag  117 (255)
                        .....|++|.+.+
T Consensus        81 --~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           81 --GMEKADMVFAFTN   93 (155)
T ss_dssp             --TGGGCSEEEECSS
T ss_pred             --CcccCCEEEEEeC
Confidence              1235899998886

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.87  E-value=0.0001  Score=62.15  Aligned_cols=91  Identities=12%  Similarity=0.346  Sum_probs=73.8

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc------------------chHHHHHHHHHhhCCCCceEEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM------------------AAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      .+++++|+|.|+ ||+|..+++.|++.|. ++.++|.+.                  .+.+...+.+++..|+.++..+.
T Consensus        33 kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~  111 (292)
T 3h8v_A           33 KIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHN  111 (292)
T ss_dssp             GGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEec
Confidence            357789999986 6999999999999996 799999875                  67788888899888888899999


Q ss_pred             eCCCCHHHHHHHHHHHhcC----CCCeeEEEEccC
Q 025275           87 LDVSSLASVRKFASEYNSQ----GRPLNILINNAG  117 (255)
Q Consensus        87 ~Dl~~~~si~~~~~~~~~~----~g~id~lv~~ag  117 (255)
                      .++++.+.++.+++.+...    ....|+||.+..
T Consensus       112 ~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D  146 (292)
T 3h8v_A          112 YNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD  146 (292)
T ss_dssp             CCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS
T ss_pred             ccCCcHHHHHHHhhhhcccccccCCCCCEEEECCc
Confidence            9999877788777654321    136899997764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.82  E-value=6.2e-05  Score=65.54  Aligned_cols=77  Identities=17%  Similarity=0.147  Sum_probs=56.3

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++++++|+|+ |++|+++++.+...|++|++++|+.++++...+...     ..+..   +..+.+.+.+.+.      
T Consensus       165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~------  229 (361)
T 1pjc_A          165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVEL---LYSNSAEIETAVA------  229 (361)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEE---EECCHHHHHHHHH------
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC-----ceeEe---eeCCHHHHHHHHc------
Confidence            56799999999 999999999999999999999999887666544331     12222   2233444444443      


Q ss_pred             CCeeEEEEccCCC
Q 025275          107 RPLNILINNAGIM  119 (255)
Q Consensus       107 g~id~lv~~ag~~  119 (255)
                       ..|++|++++..
T Consensus       230 -~~DvVI~~~~~~  241 (361)
T 1pjc_A          230 -EADLLIGAVLVP  241 (361)
T ss_dssp             -TCSEEEECCCCT
T ss_pred             -CCCEEEECCCcC
Confidence             589999999864

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.79  E-value=5.6e-05  Score=65.73  Aligned_cols=78  Identities=14%  Similarity=0.202  Sum_probs=55.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+||+|++|...++.+...|++|++++++.++++... +   .  +.. ..  +|.++.+ +.+.+.+..  .+
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~-~---~--Ga~-~~--~~~~~~~-~~~~~~~~~--~~  230 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLK-S---L--GCD-RP--INYKTEP-VGTVLKQEY--PE  230 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-H---T--TCS-EE--EETTTSC-HHHHHHHHC--TT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-H---c--CCc-EE--EecCChh-HHHHHHHhc--CC
Confidence            5889999999999999999999999999999999876654432 2   2  322 22  2444432 333444432  24


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++|+|+|
T Consensus       231 g~D~vid~~g  240 (362)
T 2c0c_A          231 GVDVVYESVG  240 (362)
T ss_dssp             CEEEEEECSC
T ss_pred             CCCEEEECCC
Confidence            6999999998

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.79  E-value=6.5e-05  Score=65.78  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=58.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+.+++++|+|+ |+||+++++.+...|++|++.+|+.++++...+.+     +..+   .++..+.+++..++.     
T Consensus       165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~-----g~~~---~~~~~~~~~l~~~l~-----  230 (377)
T 2vhw_A          165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF-----CGRI---HTRYSSAYELEGAVK-----  230 (377)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----TTSS---EEEECCHHHHHHHHH-----
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc-----CCee---EeccCCHHHHHHHHc-----
Confidence            578999999998 99999999999999999999999987655443322     2222   234445556666554     


Q ss_pred             CCCeeEEEEccCCC
Q 025275          106 GRPLNILINNAGIM  119 (255)
Q Consensus       106 ~g~id~lv~~ag~~  119 (255)
                        ..|++|++++..
T Consensus       231 --~aDvVi~~~~~p  242 (377)
T 2vhw_A          231 --RADLVIGAVLVP  242 (377)
T ss_dssp             --HCSEEEECCCCT
T ss_pred             --CCCEEEECCCcC
Confidence              479999998754

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=97.77  E-value=6.6e-05  Score=67.34  Aligned_cols=84  Identities=17%  Similarity=0.257  Sum_probs=57.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEe--C--------CCCHHHHHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL--D--------VSSLASVRK   97 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--D--------l~~~~si~~   97 (255)
                      .|.++||+||+|+||...++.+...|++|++++++.++++.+ +++     +....+-..  |        ..+.++++.
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~-~~l-----Ga~~vi~~~~~d~~~~~~~~~~~~~~~~~  301 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEIC-RAM-----GAEAIIDRNAEGYRFWKDENTQDPKEWKR  301 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHH-----TCCEEEETTTTTCCSEEETTEECHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHH-Hhh-----CCcEEEecCcCcccccccccccchHHHHH
Confidence            588999999999999999999888999999999877665433 333     222111111  1        234455555


Q ss_pred             HHHHHhcCC--CCeeEEEEccC
Q 025275           98 FASEYNSQG--RPLNILINNAG  117 (255)
Q Consensus        98 ~~~~~~~~~--g~id~lv~~ag  117 (255)
                      +.+++.+..  .++|++|.++|
T Consensus       302 ~~~~i~~~t~g~g~Dvvid~~G  323 (456)
T 3krt_A          302 FGKRIRELTGGEDIDIVFEHPG  323 (456)
T ss_dssp             HHHHHHHHHTSCCEEEEEECSC
T ss_pred             HHHHHHHHhCCCCCcEEEEcCC
Confidence            555555432  37999999998

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.76  E-value=9.2e-05  Score=63.70  Aligned_cols=77  Identities=14%  Similarity=0.078  Sum_probs=54.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+|+ |++|..+++.+...|++|++++++.++++... +   .  +.. .  .+|.++.+ +.+.+.++.   +
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~---l--Ga~-~--~~d~~~~~-~~~~~~~~~---~  229 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-E---L--GAD-L--VVNPLKED-AAKFMKEKV---G  229 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-H---T--TCS-E--EECTTTSC-HHHHHHHHH---S
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-H---C--CCC-E--EecCCCcc-HHHHHHHHh---C
Confidence            5789999999 78999999999999999999999877654432 2   2  322 1  24766543 333333332   4


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|+++|.
T Consensus       230 ~~d~vid~~g~  240 (339)
T 1rjw_A          230 GVHAAVVTAVS  240 (339)
T ss_dssp             SEEEEEESSCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.73  E-value=0.00016  Score=62.38  Aligned_cols=78  Identities=13%  Similarity=0.156  Sum_probs=55.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+||+|++|...++.+...|++|++++++.++++.+. ++     +.. ..  +|..+  .+.+.+.+.  ..+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~-~v--i~~~~--~~~~~~~~~--~~~  216 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTK-KM-----GAD-IV--LNHKE--SLLNQFKTQ--GIE  216 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHH-HH-----TCS-EE--ECTTS--CHHHHHHHH--TCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hc-----CCc-EE--EECCc--cHHHHHHHh--CCC
Confidence            5899999999999999999999999999999999877654433 22     322 22  23333  233334443  334


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|.++|.
T Consensus       217 g~Dvv~d~~g~  227 (346)
T 3fbg_A          217 LVDYVFCTFNT  227 (346)
T ss_dssp             CEEEEEESSCH
T ss_pred             CccEEEECCCc
Confidence            79999999983

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.73  E-value=7.6e-05  Score=63.10  Aligned_cols=73  Identities=18%  Similarity=0.235  Sum_probs=52.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-HHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-LASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~si~~~~~~~~~~~  106 (255)
                      .|++++|+|++|++|..+++.+...|++|++++++.++++... ++     +.. ..  +|..+ .+..    +++    
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~-----ga~-~~--~~~~~~~~~~----~~~----  187 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-AL-----GAE-EA--ATYAEVPERA----KAW----  187 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HT-----TCS-EE--EEGGGHHHHH----HHT----
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc-----CCC-EE--EECCcchhHH----HHh----
Confidence            5899999999999999999999999999999999887765442 22     222 12  35544 3322    222    


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +++|++|+ +|.
T Consensus       188 ~~~d~vid-~g~  198 (302)
T 1iz0_A          188 GGLDLVLE-VRG  198 (302)
T ss_dssp             TSEEEEEE-CSC
T ss_pred             cCceEEEE-CCH
Confidence            47999999 873

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=97.72  E-value=0.00012  Score=63.03  Aligned_cols=76  Identities=20%  Similarity=0.395  Sum_probs=52.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+||+|+||...++.+...|++|+++ ++.++++. .+++     +..  .  +| .+.+ +...+.+... ..
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~-~~~l-----Ga~--~--i~-~~~~-~~~~~~~~~~-~~  215 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEY-VRDL-----GAT--P--ID-ASRE-PEDYAAEHTA-GQ  215 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHH-HHHH-----TSE--E--EE-TTSC-HHHHHHHHHT-TS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHH-HHHc-----CCC--E--ec-cCCC-HHHHHHHHhc-CC
Confidence            58899999999999999999999999999998 66655433 2332     332  2  34 3333 3333333322 23


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++|.++|
T Consensus       216 g~D~vid~~g  225 (343)
T 3gaz_A          216 GFDLVYDTLG  225 (343)
T ss_dssp             CEEEEEESSC
T ss_pred             CceEEEECCC
Confidence            6999999998

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.70  E-value=0.00049  Score=58.68  Aligned_cols=120  Identities=18%  Similarity=0.146  Sum_probs=73.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++.|+||+|.+|..++..|++.|  .+|++.++++  .+.....+.......++....    ..++.+.+++       .
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~----~t~d~~~a~~-------~   68 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYL----GPEQLPDCLK-------G   68 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEE----SGGGHHHHHT-------T
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEec----CCCCHHHHhC-------C
Confidence            58999999999999999999988  5899999987  333333333221111122110    0122333444       5


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      .|++|+++|....+. .+-.   +.+..|+.....+++.+.++.        ..+.+|++|......
T Consensus        69 aDvVvi~ag~~~~~g-~~r~---dl~~~n~~i~~~i~~~i~~~~--------p~a~viv~sNPv~~~  123 (314)
T 1mld_A           69 CDVVVIPAGVPRKPG-MTRD---DLFNTNATIVATLTAACAQHC--------PDAMICIISNPVNST  123 (314)
T ss_dssp             CSEEEECCSCCCCTT-CCGG---GGHHHHHHHHHHHHHHHHHHC--------TTSEEEECSSCHHHH
T ss_pred             CCEEEECCCcCCCCC-CcHH---HHHHHHHHHHHHHHHHHHhhC--------CCeEEEEECCCcchh
Confidence            799999999865432 2222   235666666555555554443        357899888877654

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.68  E-value=0.00016  Score=62.34  Aligned_cols=79  Identities=18%  Similarity=0.244  Sum_probs=53.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|+++||+|+ |++|...++.+...|+ +|++++++.++++.. +++     +.. ..  +|..+++ +.+.+.++.. .
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~-~~~-----Ga~-~~--~~~~~~~-~~~~v~~~~~-g  234 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELA-KKV-----GAD-YV--INPFEED-VVKEVMDITD-G  234 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHH-HHH-----TCS-EE--ECTTTSC-HHHHHHHHTT-T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-----CCC-EE--ECCCCcC-HHHHHHHHcC-C
Confidence            7889999999 9999999999988999 899999987654433 233     321 12  3555433 3333333321 1


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      .++|++|.++|.
T Consensus       235 ~g~D~vid~~g~  246 (348)
T 2d8a_A          235 NGVDVFLEFSGA  246 (348)
T ss_dssp             SCEEEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            269999999983

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.66  E-value=7.1e-05  Score=58.42  Aligned_cols=78  Identities=13%  Similarity=0.098  Sum_probs=56.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++.++.++|.| .|.+|..+++.|.+. |++|++++++++..+.    +...  +  +..+..|.++++.+..+     .
T Consensus        36 ~~~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~----~~~~--g--~~~~~gd~~~~~~l~~~-----~  101 (183)
T 3c85_A           36 NPGHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQ----HRSE--G--RNVISGDATDPDFWERI-----L  101 (183)
T ss_dssp             CCTTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHH----HHHT--T--CCEEECCTTCHHHHHTB-----C
T ss_pred             CCCCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHH----HHHC--C--CCEEEcCCCCHHHHHhc-----c
Confidence            45677788888 599999999999999 9999999999766443    3222  2  45677899987654422     0


Q ss_pred             CCCCeeEEEEccC
Q 025275          105 QGRPLNILINNAG  117 (255)
Q Consensus       105 ~~g~id~lv~~ag  117 (255)
                      .....|++|.+.+
T Consensus       102 ~~~~ad~vi~~~~  114 (183)
T 3c85_A          102 DTGHVKLVLLAMP  114 (183)
T ss_dssp             SCCCCCEEEECCS
T ss_pred             CCCCCCEEEEeCC
Confidence            1346899998775

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.65  E-value=0.00018  Score=59.44  Aligned_cols=82  Identities=15%  Similarity=0.289  Sum_probs=64.0

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc-------------------chHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM-------------------AAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++++|+|.|+ ||+|.++++.|+..|. ++.+++++.                   .+.+.+.+.+.+..|+.++..+.
T Consensus        26 l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  104 (251)
T 1zud_1           26 LLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ  104 (251)
T ss_dssp             HHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence            56789999998 6799999999999997 688886542                   56778888888887777777777


Q ss_pred             eCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           87 LDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        87 ~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      .+++. +.+..+++       ..|+||.+..
T Consensus       105 ~~~~~-~~~~~~~~-------~~DvVi~~~d  127 (251)
T 1zud_1          105 QRLTG-EALKDAVA-------RADVVLDCTD  127 (251)
T ss_dssp             SCCCH-HHHHHHHH-------HCSEEEECCS
T ss_pred             ccCCH-HHHHHHHh-------cCCEEEECCC
Confidence            66764 45666665       3699998764

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=97.62  E-value=0.00017  Score=62.20  Aligned_cols=123  Identities=13%  Similarity=0.069  Sum_probs=74.7

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhh-CCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKE-IPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ++++++.|+|++|.+|..+|..++.+|.  +|++.|.+.++++.....+... .+..++.+-    +|   ....++   
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t----~d---~~~al~---   75 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFT----SD---IKEALT---   75 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEE----SC---HHHHHT---
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEc----CC---HHHHhC---
Confidence            4567899999999999999999999994  7999999887666544444432 122222211    12   222333   


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCe-EEEecCCcccc
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGR-IVNVSSEAHRF  175 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~-ii~vsS~~~~~  175 (255)
                          ..|++|.+||.+..+- .   +-.+.+..|+.-...+++.+.++-        ..+. ++++|......
T Consensus        76 ----dADvVvitaG~p~kpG-~---~R~dLl~~N~~I~~~i~~~i~~~~--------p~a~~vlvvsNPvd~~  132 (343)
T 3fi9_A           76 ----DAKYIVSSGGAPRKEG-M---TREDLLKGNAEIAAQLGKDIKSYC--------PDCKHVIIIFNPADIT  132 (343)
T ss_dssp             ----TEEEEEECCC-----------CHHHHHHHHHHHHHHHHHHHHHHC--------TTCCEEEECSSSHHHH
T ss_pred             ----CCCEEEEccCCCCCCC-C---CHHHHHHHHHHHHHHHHHHHHHhc--------cCcEEEEEecCchHHH
Confidence                5899999999754332 1   223446666655555555544443        3454 78888876443

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.60  E-value=3.6e-05  Score=57.82  Aligned_cols=72  Identities=14%  Similarity=0.218  Sum_probs=53.3

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +++++|.|+ |++|+.+++.|.+.|++|++.+|+.++.++..+++     +  ....  +..+   +...++       .
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~-----~--~~~~--~~~~---~~~~~~-------~   80 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY-----E--YEYV--LIND---IDSLIK-------N   80 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH-----T--CEEE--ECSC---HHHHHH-------T
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh-----C--CceE--eecC---HHHHhc-------C
Confidence            789999996 99999999999999999999999988776666554     2  1121  2333   333343       4


Q ss_pred             eeEEEEccCCCC
Q 025275          109 LNILINNAGIMA  120 (255)
Q Consensus       109 id~lv~~ag~~~  120 (255)
                      .|++|.+.+...
T Consensus        81 ~Divi~at~~~~   92 (144)
T 3oj0_A           81 NDVIITATSSKT   92 (144)
T ss_dssp             CSEEEECSCCSS
T ss_pred             CCEEEEeCCCCC
Confidence            799999987643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.58  E-value=0.00024  Score=53.02  Aligned_cols=73  Identities=12%  Similarity=0.095  Sum_probs=55.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +.++|.|+ |.+|..+++.|.+.|++|++++++++..+...    ..    .+.++..|.++++.+..+      .....
T Consensus         8 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~----~~----g~~~i~gd~~~~~~l~~a------~i~~a   72 (140)
T 3fwz_A            8 NHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELR----ER----GVRAVLGNAANEEIMQLA------HLECA   72 (140)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH----HT----TCEEEESCTTSHHHHHHT------TGGGC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH----Hc----CCCEEECCCCCHHHHHhc------CcccC
Confidence            45778886 88999999999999999999999987654433    22    356788999998866543      11257


Q ss_pred             eEEEEccC
Q 025275          110 NILINNAG  117 (255)
Q Consensus       110 d~lv~~ag  117 (255)
                      |.+|.+.+
T Consensus        73 d~vi~~~~   80 (140)
T 3fwz_A           73 KWLILTIP   80 (140)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEECC
Confidence            88887765

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=97.54  E-value=0.00018  Score=61.04  Aligned_cols=93  Identities=17%  Similarity=0.190  Sum_probs=60.5

Q ss_pred             CCCcE-EEEecCCC-----------------c-hHHHHHHHHHHcCCeEEEEEeccchHH------HH--HHHHHhhC-C
Q 025275           27 GTGLT-AIVTGASS-----------------G-IGTETARVLALRGVHVIMAVRNMAAGK------DV--REAIVKEI-P   78 (255)
Q Consensus        27 ~~~k~-vlItG~s~-----------------g-iG~~ia~~L~~~G~~Vi~~~r~~~~~~------~~--~~~~~~~~-~   78 (255)
                      +.||+ ||||+|++                 | .|.++|++++++|++|+++.+...-..      ..  .+.+.... .
T Consensus        34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~~~  113 (313)
T 1p9o_A           34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPA  113 (313)
T ss_dssp             HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTSCCTTGGGSCHHHHHHHCEECCC-
T ss_pred             hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCCcCcchhccCccchhhhhcccccc
Confidence            57787 99998876                 6 999999999999999999998643110      00  11110000 0


Q ss_pred             CCceEEEEeCCCCHHHHHHHHHHH------------------------------hcCCCCeeEEEEccCCC
Q 025275           79 SAKVDAMELDVSSLASVRKFASEY------------------------------NSQGRPLNILINNAGIM  119 (255)
Q Consensus        79 ~~~~~~~~~Dl~~~~si~~~~~~~------------------------------~~~~g~id~lv~~ag~~  119 (255)
                      ...+..+.+|+...+++..++.+.                              .+.++..|++|.+|++.
T Consensus       114 ~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVs  184 (313)
T 1p9o_A          114 LSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVS  184 (313)
T ss_dssp             CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCC
T ss_pred             ccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchh
Confidence            123445666776666555555443                              23457799999999986

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.54  E-value=0.00014  Score=60.79  Aligned_cols=76  Identities=16%  Similarity=0.270  Sum_probs=57.0

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.+++.+++..    ..+...  ++.+   +.      
T Consensus       115 ~~~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~----~~~~~~--~~~~---l~------  178 (272)
T 3pwz_A          115 GEPLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH----SRLRIS--RYEA---LE------  178 (272)
T ss_dssp             CCCCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC----TTEEEE--CSGG---GT------
T ss_pred             CCCccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc----CCeeEe--eHHH---hc------
Confidence            45688999999998 6999999999999996 899999999888888777633    123333  2222   11      


Q ss_pred             hcCCCCeeEEEEccCC
Q 025275          103 NSQGRPLNILINNAGI  118 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~  118 (255)
                       .  ...|+|||+...
T Consensus       179 -~--~~~DivInaTp~  191 (272)
T 3pwz_A          179 -G--QSFDIVVNATSA  191 (272)
T ss_dssp             -T--CCCSEEEECSSG
T ss_pred             -c--cCCCEEEECCCC
Confidence             1  368999999754

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.53  E-value=0.00068  Score=58.46  Aligned_cols=81  Identities=21%  Similarity=0.198  Sum_probs=51.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-HHHHHHHHHHHhc-C
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-LASVRKFASEYNS-Q  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~si~~~~~~~~~-~  105 (255)
                      .|+++||+|+ |++|...++.+...|++|++++++.++++.. ++   .  +.. ..+  |.++ .+..+.+.+.... .
T Consensus       168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~---l--Ga~-~~~--~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVA-KN---C--GAD-VTL--VVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HH---T--TCS-EEE--ECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HH---h--CCC-EEE--cCcccccHHHHHHHHhcccc
Confidence            5789999997 8999999988888999999999887664433 22   2  322 222  4443 2222222222210 1


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                      .+++|++|.++|.
T Consensus       238 g~g~D~vid~~g~  250 (352)
T 1e3j_A          238 GDLPNVTIDCSGN  250 (352)
T ss_dssp             SSCCSEEEECSCC
T ss_pred             CCCCCEEEECCCC
Confidence            2369999999983

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.52  E-value=0.00017  Score=57.97  Aligned_cols=73  Identities=14%  Similarity=0.138  Sum_probs=55.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      +++|.|+ |.+|..+++.|.+.|.+|++++++++..+...+..       .+.++..|.++++.+..+      .....|
T Consensus         2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-------~~~~i~gd~~~~~~l~~a------~i~~ad   67 (218)
T 3l4b_C            2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-------KATIIHGDGSHKEILRDA------EVSKND   67 (218)
T ss_dssp             CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-------SSEEEESCTTSHHHHHHH------TCCTTC
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-------CCeEEEcCCCCHHHHHhc------CcccCC
Confidence            5899996 89999999999999999999999987654433221       356788999998766543      123578


Q ss_pred             EEEEccC
Q 025275          111 ILINNAG  117 (255)
Q Consensus       111 ~lv~~ag  117 (255)
                      ++|.+.+
T Consensus        68 ~vi~~~~   74 (218)
T 3l4b_C           68 VVVILTP   74 (218)
T ss_dssp             EEEECCS
T ss_pred             EEEEecC
Confidence            8887765

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.49  E-value=0.00021  Score=61.47  Aligned_cols=121  Identities=13%  Similarity=0.062  Sum_probs=74.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC--e-----EEEEEecc--chHHHHHHHHHhh-CCCCceEEEEeCCCCHHHHHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV--H-----VIMAVRNM--AAGKDVREAIVKE-IPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~--~-----Vi~~~r~~--~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      ++++||||+|.||.+++..|+..|.  +     ++++++++  +.++-....+... .+  ...  ....++  .....+
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~--~~~--~~~~~~--~~~~~~   77 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP--LLK--DVIATD--KEEIAF   77 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCT--TEE--EEEEES--CHHHHT
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhc--ccC--CEEEcC--CcHHHh
Confidence            4799999999999999999998875  5     99999875  2444444444432 11  111  111111  122222


Q ss_pred             HHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-eEEEecCCcccc
Q 025275          100 SEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREG-RIVNVSSEAHRF  175 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g-~ii~vsS~~~~~  175 (255)
                      +       ..|++|++||....+-+ +   -.+.++.|+.....+++.+.++-.        .+ +++++|......
T Consensus        78 ~-------daDvVvitAg~prkpG~-t---R~dll~~N~~i~~~i~~~i~~~~~--------~~~~vivvsNPvd~~  135 (333)
T 5mdh_A           78 K-------DLDVAILVGSMPRRDGM-E---RKDLLKANVKIFKCQGAALDKYAK--------KSVKVIVVGNPANTN  135 (333)
T ss_dssp             T-------TCSEEEECCSCCCCTTC-C---TTTTHHHHHHHHHHHHHHHHHHSC--------TTCEEEECSSSHHHH
T ss_pred             C-------CCCEEEEeCCCCCCCCC-C---HHHHHHHHHHHHHHHHHHHHHhCC--------CCeEEEEcCCchHHH
Confidence            2       58999999997654322 2   223467777776666665554432        34 688888876544

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.49  E-value=0.00076  Score=58.40  Aligned_cols=83  Identities=18%  Similarity=0.152  Sum_probs=58.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCe-EEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVH-VIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.++||+|+ |++|...++-+...|++ |++++++.++++.. +++ .    ..+..+..|-.+.+.+.+.+.+... .
T Consensus       179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l-~----~~~~~~~~~~~~~~~~~~~v~~~t~-g  250 (363)
T 3m6i_A          179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFA-KEI-C----PEVVTHKVERLSAEESAKKIVESFG-G  250 (363)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH-HHH-C----TTCEEEECCSCCHHHHHHHHHHHTS-S
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-c----hhcccccccccchHHHHHHHHHHhC-C
Confidence            5789999998 99999998888889997 99998887765433 333 2    2344555565555555555555432 2


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      .++|++|.++|.
T Consensus       251 ~g~Dvvid~~g~  262 (363)
T 3m6i_A          251 IEPAVALECTGV  262 (363)
T ss_dssp             CCCSEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            369999999984

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.48  E-value=0.0014  Score=56.20  Aligned_cols=121  Identities=12%  Similarity=0.009  Sum_probs=75.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCC--CceEEEEeCCCCHHHHHHHHHHHh
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPS--AKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ..+++.|+|+ |.+|.+++..|++.|.  +|++.++++++++.....+....+.  ..+....-|   +           
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~-----------   68 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y-----------   68 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G-----------
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H-----------
Confidence            3467999996 9999999999999996  8999999887776655555442221  223333222   1           


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      +.+...|++|.++|.+..+- .+   -.+.++.|+.-...+++    .+.+.    ...+.++++|......
T Consensus        69 ~a~~~aDvVvi~ag~p~kpG-~~---R~dL~~~N~~Iv~~i~~----~I~~~----~p~a~vlvvtNPvd~~  128 (326)
T 3pqe_A           69 EDCKDADIVCICAGANQKPG-ET---RLELVEKNLKIFKGIVS----EVMAS----GFDGIFLVATNPVDIL  128 (326)
T ss_dssp             GGGTTCSEEEECCSCCCCTT-CC---HHHHHHHHHHHHHHHHH----HHHHT----TCCSEEEECSSSHHHH
T ss_pred             HHhCCCCEEEEecccCCCCC-cc---HHHHHHHHHHHHHHHHH----HHHHh----cCCeEEEEcCChHHHH
Confidence            11235899999999764432 22   22345556554444444    44432    2357888888876544

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.46  E-value=0.00033  Score=61.05  Aligned_cols=76  Identities=26%  Similarity=0.399  Sum_probs=51.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+||+|++|...++.+...|++|+++++ .++.+. .+++     +.. ..  +|.++.+..+    ++.+ .+
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~~~-~~~l-----Ga~-~v--~~~~~~~~~~----~~~~-~~  247 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDASEL-VRKL-----GAD-DV--IDYKSGSVEE----QLKS-LK  247 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHHH-HHHT-----TCS-EE--EETTSSCHHH----HHHT-SC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHHHH-HHHc-----CCC-EE--EECCchHHHH----HHhh-cC
Confidence            5889999999999999999988889999998884 444332 2322     322 22  2555433222    2222 25


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|.++|.
T Consensus       248 g~D~vid~~g~  258 (375)
T 2vn8_A          248 PFDFILDNVGG  258 (375)
T ss_dssp             CBSEEEESSCT
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.42  E-value=0.00027  Score=60.34  Aligned_cols=75  Identities=23%  Similarity=0.325  Sum_probs=49.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++||+|++|++|...++.+...|++|++++++.++++... ++     +.. ..  +|..+.+  ...++++.  .+++|
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~-~l-----Ga~-~~--i~~~~~~--~~~~~~~~--~~~~d  218 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VL-----GAK-EV--LAREDVM--AERIRPLD--KQRWA  218 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HT-----TCS-EE--EECC-----------CC--SCCEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-Hc-----CCc-EE--EecCCcH--HHHHHHhc--CCccc
Confidence            7999999999999999988889999999999987755442 22     322 12  2444432  22233332  24699


Q ss_pred             EEEEccCC
Q 025275          111 ILINNAGI  118 (255)
Q Consensus       111 ~lv~~ag~  118 (255)
                      ++|.++|.
T Consensus       219 ~vid~~g~  226 (328)
T 1xa0_A          219 AAVDPVGG  226 (328)
T ss_dssp             EEEECSTT
T ss_pred             EEEECCcH
Confidence            99999984

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=97.42  E-value=0.00039  Score=60.22  Aligned_cols=85  Identities=16%  Similarity=0.216  Sum_probs=52.7

Q ss_pred             CC-cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCH--HHHHHHHHHHhc
Q 025275           28 TG-LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL--ASVRKFASEYNS  104 (255)
Q Consensus        28 ~~-k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~--~si~~~~~~~~~  104 (255)
                      .| .++||+||+|++|...++-+...|++|+++.++.++..+..+.+++.  +.. ..+  |..+.  +.+.+.+.++..
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~l--Ga~-~vi--~~~~~~~~~~~~~i~~~t~  240 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKEL--GAT-QVI--TEDQNNSREFGPTIKEWIK  240 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHH--TCS-EEE--EHHHHHCGGGHHHHHHHHH
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhc--CCe-EEE--ecCccchHHHHHHHHHHhh
Confidence            47 89999999999999888888889999999988776533333333333  322 122  22110  112222333220


Q ss_pred             -CCCCeeEEEEccC
Q 025275          105 -QGRPLNILINNAG  117 (255)
Q Consensus       105 -~~g~id~lv~~ag  117 (255)
                       ..+++|++|.++|
T Consensus       241 ~~~~g~Dvvid~~G  254 (364)
T 1gu7_A          241 QSGGEAKLALNCVG  254 (364)
T ss_dssp             HHTCCEEEEEESSC
T ss_pred             ccCCCceEEEECCC
Confidence             1246999999998

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.41  E-value=0.00024  Score=61.12  Aligned_cols=77  Identities=18%  Similarity=0.242  Sum_probs=53.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.++||+|+ |++|...++.+...|+ +|++++++.++++... ++ .    .  ..  +|..+++ +.+.+.++.  .
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~l-a----~--~v--~~~~~~~-~~~~~~~~~--~  229 (343)
T 2dq4_A          164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR-PY-A----D--RL--VNPLEED-LLEVVRRVT--G  229 (343)
T ss_dssp             TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGT-TT-C----S--EE--ECTTTSC-HHHHHHHHH--S
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-H----H--hc--cCcCccC-HHHHHHHhc--C
Confidence            7899999999 9999999998888999 8999998876543221 11 1    1  11  3555432 334444443  3


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +++|++|.++|.
T Consensus       230 ~g~D~vid~~g~  241 (343)
T 2dq4_A          230 SGVEVLLEFSGN  241 (343)
T ss_dssp             SCEEEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            469999999983

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.39  E-value=0.0005  Score=60.69  Aligned_cols=74  Identities=19%  Similarity=0.312  Sum_probs=54.4

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++.|++++|.|+ |++|+.+++.|...|+ +|++++|+.++.++..+++     +..  .  .+..   ++...+.    
T Consensus       164 ~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~-----g~~--~--~~~~---~l~~~l~----  226 (404)
T 1gpj_A          164 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-----GGE--A--VRFD---ELVDHLA----  226 (404)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-----TCE--E--CCGG---GHHHHHH----
T ss_pred             cccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc-----CCc--e--ecHH---hHHHHhc----
Confidence            578999999998 9999999999999998 8999999987765655554     221  1  2222   2333332    


Q ss_pred             CCCCeeEEEEccCCC
Q 025275          105 QGRPLNILINNAGIM  119 (255)
Q Consensus       105 ~~g~id~lv~~ag~~  119 (255)
                         ..|++|.+.+..
T Consensus       227 ---~aDvVi~at~~~  238 (404)
T 1gpj_A          227 ---RSDVVVSATAAP  238 (404)
T ss_dssp             ---TCSEEEECCSSS
T ss_pred             ---CCCEEEEccCCC
Confidence               579999998753

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.35  E-value=0.0034  Score=53.82  Aligned_cols=123  Identities=11%  Similarity=0.018  Sum_probs=78.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhh--CCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKE--IPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ....+++.|+|+ |.+|.+++..|+.+|.  +|++.+++.++++.....+...  .+. ....+..  +|++        
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~-~~~i~~~--~d~~--------   83 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLK-TPKIVSS--KDYS--------   83 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCS-CCEEEEC--SSGG--------
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccC-CCeEEEc--CCHH--------
Confidence            345678999997 9999999999999997  7999999987776666556542  111 1122222  2221        


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                         .+...|++|.+||....+- ++-+   +.++.|+.-...+++.+.++        ...+.++++|......
T Consensus        84 ---~~~~aDiVvi~aG~~~kpG-~tR~---dL~~~N~~I~~~i~~~i~~~--------~p~a~vlvvtNPvdi~  142 (331)
T 4aj2_A           84 ---VTANSKLVIITAGARQQEG-ESRL---NLVQRNVNIFKFIIPNVVKY--------SPQCKLLIVSNPVDIL  142 (331)
T ss_dssp             ---GGTTEEEEEECCSCCCCTT-CCGG---GGHHHHHHHHHHHHHHHHHH--------CTTCEEEECSSSHHHH
T ss_pred             ---HhCCCCEEEEccCCCCCCC-ccHH---HHHHHHHHHHHHHHHHHHHH--------CCCeEEEEecChHHHH
Confidence               1236899999999865443 2222   24555555444444444443        2357899999876544

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.34  E-value=0.00066  Score=58.87  Aligned_cols=78  Identities=15%  Similarity=0.196  Sum_probs=53.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|+++||+| +|++|...++.+...|++|++++++.++++.. +++     +.. ..+  | .+.+.+.+.+.++.. ..
T Consensus       189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~l-----Ga~-~vi--~-~~~~~~~~~v~~~~~-g~  256 (363)
T 3uog_A          189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRA-FAL-----GAD-HGI--N-RLEEDWVERVYALTG-DR  256 (363)
T ss_dssp             TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH-----TCS-EEE--E-TTTSCHHHHHHHHHT-TC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHH-HHc-----CCC-EEE--c-CCcccHHHHHHHHhC-CC
Confidence            588999999 89999999998888999999999987765443 333     322 222  4 332233333443322 23


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++|.++|
T Consensus       257 g~D~vid~~g  266 (363)
T 3uog_A          257 GADHILEIAG  266 (363)
T ss_dssp             CEEEEEEETT
T ss_pred             CceEEEECCC
Confidence            6999999998

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.34  E-value=0.0028  Score=53.98  Aligned_cols=122  Identities=20%  Similarity=0.149  Sum_probs=74.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec--cchHHHHHHHHHhhC----CCCceEEEEeCCCCHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN--MAAGKDVREAIVKEI----PSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~--~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      .++.+++.|+|+ |.+|.+++..|+..|. +|++.+++  ++..+.....+....    ...++..  .  ++.      
T Consensus         5 ~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~--t--~d~------   73 (315)
T 3tl2_A            5 TIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG--T--SDY------   73 (315)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE--E--SCG------
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE--c--CCH------
Confidence            345678999997 9999999999999999 99999999  444433333332210    0112221  1  111      


Q ss_pred             HHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275           99 ASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                           +.+...|++|.++|.+..+- .+-   .+.++.|+.-.-.+.+.+.++        ...+.++++|......
T Consensus        74 -----~a~~~aDvVIiaag~p~kpg-~~R---~dl~~~N~~i~~~i~~~i~~~--------~p~a~vlvvsNPvd~~  133 (315)
T 3tl2_A           74 -----ADTADSDVVVITAGIARKPG-MSR---DDLVATNSKIMKSITRDIAKH--------SPNAIIVVLTNPVDAM  133 (315)
T ss_dssp             -----GGGTTCSEEEECCSCCCCTT-CCH---HHHHHHHHHHHHHHHHHHHHH--------CTTCEEEECCSSHHHH
T ss_pred             -----HHhCCCCEEEEeCCCCCCCC-CCH---HHHHHHHHHHHHHHHHHHHHh--------CCCeEEEECCChHHHH
Confidence                 12346899999999865442 222   334555655444444444433        2357888888876544

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=97.28  E-value=0.0009  Score=57.46  Aligned_cols=83  Identities=13%  Similarity=0.241  Sum_probs=62.8

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc-------------------chHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM-------------------AAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++++|+|.|+ ||+|.++++.|+..|. ++.+++++.                   .+.+...+.+.+..|+.++..+.
T Consensus        32 L~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~  110 (340)
T 3rui_A           32 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK  110 (340)
T ss_dssp             HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             HhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEe
Confidence            57889999987 6999999999999997 688888753                   56778888888888877777777


Q ss_pred             eCCC-------C-------HHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           87 LDVS-------S-------LASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        87 ~Dl~-------~-------~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      .++.       +       .+.+..+++       ..|+||.+..
T Consensus       111 ~~i~~~g~~~~~~~~~~~~~~~l~~~l~-------~~DlVvd~tD  148 (340)
T 3rui_A          111 LSIPMIGHKLVNEEAQHKDFDRLRALIK-------EHDIIFLLVD  148 (340)
T ss_dssp             CCCCCTTSCCSCHHHHHHHHHHHHHHHH-------HCSEEEECCS
T ss_pred             ccccccCcccchhhhhcCCHHHHHhhhc-------cCCEEEecCC
Confidence            6552       2       223334444       4799998875

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.25  E-value=0.00023  Score=59.55  Aligned_cols=44  Identities=18%  Similarity=0.068  Sum_probs=38.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDV   69 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~   69 (255)
                      .++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.+++
T Consensus       113 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l  157 (277)
T 3don_A          113 EGIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNW  157 (277)
T ss_dssp             TTGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            4678999999997 7999999999999999 899999998765443

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.25  E-value=0.0029  Score=54.12  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=72.5

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhC----CCCceEEEEeCCCCHHHHHHHHHH
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEI----PSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ++.+++.|+|+ |.+|.+++..|+..|. +|++.++++++++.....+....    ...++...    +|.+    .   
T Consensus         5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t----~d~~----a---   72 (324)
T 3gvi_A            5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGA----NDYA----A---   72 (324)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE----SSGG----G---
T ss_pred             CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEe----CCHH----H---
Confidence            34568999998 9999999999999998 99999999987654444443321    11222221    1211    1   


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                          +...|++|.++|.+..+-. +-   .+.+..|+.-    ++...+.+.+.    ...+.++++|......
T Consensus        73 ----~~~aDiVIiaag~p~k~G~-~R---~dl~~~N~~i----~~~i~~~i~~~----~p~a~iivvtNPvd~~  130 (324)
T 3gvi_A           73 ----IEGADVVIVTAGVPRKPGM-SR---DDLLGINLKV----MEQVGAGIKKY----APEAFVICITNPLDAM  130 (324)
T ss_dssp             ----GTTCSEEEECCSCCCC---------CHHHHHHHHH----HHHHHHHHHHH----CTTCEEEECCSSHHHH
T ss_pred             ----HCCCCEEEEccCcCCCCCC-CH---HHHHHhhHHH----HHHHHHHHHHH----CCCeEEEecCCCcHHH
Confidence                2358999999997654322 21   1234444443    44444444432    2356888888876544

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=97.24  E-value=0.00051  Score=59.52  Aligned_cols=82  Identities=16%  Similarity=0.339  Sum_probs=65.7

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc-------------------chHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM-------------------AAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++++|+|.|+ ||+|.++++.|+..|. ++.+++++.                   .+.+...+.+.+..|..++..+.
T Consensus       116 L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~  194 (353)
T 3h5n_A          116 LKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIA  194 (353)
T ss_dssp             HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             HhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEee
Confidence            56889999988 7899999999999997 799998752                   46677888888888888899998


Q ss_pred             eCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           87 LDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        87 ~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      .+++....+.       + +...|+||.+..
T Consensus       195 ~~i~~~~~~~-------~-~~~~DlVvd~~D  217 (353)
T 3h5n_A          195 LNINDYTDLH-------K-VPEADIWVVSAD  217 (353)
T ss_dssp             CCCCSGGGGG-------G-SCCCSEEEECCC
T ss_pred             cccCchhhhh-------H-hccCCEEEEecC
Confidence            8888764322       2 447899998764

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=97.24  E-value=0.0023  Score=55.80  Aligned_cols=80  Identities=18%  Similarity=0.195  Sum_probs=53.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCC--CHHHHHHHHHHHhc
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS--SLASVRKFASEYNS  104 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--~~~si~~~~~~~~~  104 (255)
                      .|.++||+| +|++|...++.+...| ++|++++++.++++.+. +   .  +.. ..+  |..  +.+++.+.+.++..
T Consensus       195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~---l--Ga~-~vi--~~~~~~~~~~~~~v~~~~~  264 (380)
T 1vj0_A          195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-E---I--GAD-LTL--NRRETSVEERRKAIMDITH  264 (380)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-H---T--TCS-EEE--ETTTSCHHHHHHHHHHHTT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-H---c--CCc-EEE--eccccCcchHHHHHHHHhC
Confidence            478999999 8999999998888899 59999999877654332 2   2  322 223  433  23444444444322


Q ss_pred             CCCCeeEEEEccCC
Q 025275          105 QGRPLNILINNAGI  118 (255)
Q Consensus       105 ~~g~id~lv~~ag~  118 (255)
                      . .++|++|.++|.
T Consensus       265 g-~g~Dvvid~~g~  277 (380)
T 1vj0_A          265 G-RGADFILEATGD  277 (380)
T ss_dssp             T-SCEEEEEECSSC
T ss_pred             C-CCCcEEEECCCC
Confidence            1 259999999984

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.21  E-value=0.0014  Score=56.17  Aligned_cols=123  Identities=13%  Similarity=0.149  Sum_probs=69.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCC-CceEEEEeCCCCHHHHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPS-AKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +..++++.|+|+ |.+|.+++..|+..|.  +|++.++++++++.....+....+- ..+.... |  ++          
T Consensus         6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~-~--~~----------   71 (326)
T 3vku_A            6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYS-A--EY----------   71 (326)
T ss_dssp             -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--CG----------
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEE-C--cH----------
Confidence            445678999996 9999999999999987  8999999887776655555543210 1222221 1  21          


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                       +.+...|++|.+||....+-+ +   -.+.++.|+.-    ++...+.+.+.    ...+.++++|......
T Consensus        72 -~a~~~aDiVvi~ag~~~kpG~-t---R~dL~~~N~~I----~~~i~~~i~~~----~p~a~ilvvtNPvdi~  131 (326)
T 3vku_A           72 -SDAKDADLVVITAGAPQKPGE-T---RLDLVNKNLKI----LKSIVDPIVDS----GFNGIFLVAANPVDIL  131 (326)
T ss_dssp             -GGGTTCSEEEECCCCC--------------------C----HHHHHHHHHTT----TCCSEEEECSSSHHHH
T ss_pred             -HHhcCCCEEEECCCCCCCCCc-h---HHHHHHHHHHH----HHHHHHHHHhc----CCceEEEEccCchHHH
Confidence             123368999999997643321 1   22334444433    44444444432    2357888888766443

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.20  E-value=0.005  Score=52.54  Aligned_cols=122  Identities=11%  Similarity=0.112  Sum_probs=74.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +.+++.|+|+ |.+|.+++..|+..|. +|++.++++++++.....+....+  +........  +|++    .      
T Consensus         4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t--~d~~----a------   70 (321)
T 3p7m_A            4 ARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT--NDYK----D------   70 (321)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCGG----G------
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc--CCHH----H------
Confidence            3467888885 9999999999999988 999999999877655545543210  111222211  1211    2      


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                       +...|++|.++|.+..+- .+-   .+.+..|+.-...+++.+.++-        ..+.++++|......
T Consensus        71 -~~~aDvVIi~ag~p~k~G-~~R---~dl~~~N~~i~~~i~~~i~~~~--------p~a~vivvtNPvd~~  128 (321)
T 3p7m_A           71 -LENSDVVIVTAGVPRKPG-MSR---DDLLGINIKVMQTVGEGIKHNC--------PNAFVICITNPLDIM  128 (321)
T ss_dssp             -GTTCSEEEECCSCCCCTT-CCH---HHHHHHHHHHHHHHHHHHHHHC--------TTCEEEECCSSHHHH
T ss_pred             -HCCCCEEEEcCCcCCCCC-CCH---HHHHHHhHHHHHHHHHHHHHHC--------CCcEEEEecCchHHH
Confidence             225899999999765432 222   2344555544444444443332        357888888876544

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=97.14  E-value=0.0019  Score=55.88  Aligned_cols=78  Identities=21%  Similarity=0.248  Sum_probs=53.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.++||+|+ |++|...++-+... |++|++++++.++++.+. ++     +.. ..  +|..++  +.+.+.++.. .
T Consensus       186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~-~v--i~~~~~--~~~~v~~~~~-g  252 (359)
T 1h2b_A          186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RL-----GAD-HV--VDARRD--PVKQVMELTR-G  252 (359)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HT-----TCS-EE--EETTSC--HHHHHHHHTT-T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-Hh-----CCC-EE--Eeccch--HHHHHHHHhC-C
Confidence            5789999999 89999988888778 999999998876644332 22     322 22  355554  4444444432 1


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      .++|++|.++|.
T Consensus       253 ~g~Dvvid~~G~  264 (359)
T 1h2b_A          253 RGVNVAMDFVGS  264 (359)
T ss_dssp             CCEEEEEESSCC
T ss_pred             CCCcEEEECCCC
Confidence            269999999984

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.13  E-value=0.00082  Score=58.16  Aligned_cols=74  Identities=15%  Similarity=0.246  Sum_probs=52.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCH-HHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL-ASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~si~~~~~~~~~~~  106 (255)
                      .|.++||+|+ |++|...++.+...|++|++++++.++++.+. ++     +.. ..+  |..+. +    ..+++.   
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~-~v~--~~~~~~~----~~~~~~---  241 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-KM-----GAD-HYI--ATLEEGD----WGEKYF---  241 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HH-----TCS-EEE--EGGGTSC----HHHHSC---
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-Hc-----CCC-EEE--cCcCchH----HHHHhh---
Confidence            5889999999 99999999888889999999999988765443 33     322 122  33332 2    222332   


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +++|++|.++|.
T Consensus       242 ~~~D~vid~~g~  253 (360)
T 1piw_A          242 DTFDLIVVCASS  253 (360)
T ss_dssp             SCEEEEEECCSC
T ss_pred             cCCCEEEECCCC
Confidence            479999999985

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.13  E-value=0.0019  Score=56.12  Aligned_cols=74  Identities=16%  Similarity=0.317  Sum_probs=53.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++||+|+ |++|...++.+...|++|++++++.++++... ++     +.. ..  +|..+.+.+    +++.   +
T Consensus       194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~-~l-----Ga~-~v--i~~~~~~~~----~~~~---~  256 (369)
T 1uuf_A          194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-AL-----GAD-EV--VNSRNADEM----AAHL---K  256 (369)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HH-----TCS-EE--EETTCHHHH----HTTT---T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCc-EE--eccccHHHH----HHhh---c
Confidence            5789999998 88999999888889999999999887765443 33     322 12  355555433    2222   4


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|.++|.
T Consensus       257 g~Dvvid~~g~  267 (369)
T 1uuf_A          257 SFDFILNTVAA  267 (369)
T ss_dssp             CEEEEEECCSS
T ss_pred             CCCEEEECCCC
Confidence            79999999985

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=97.11  E-value=0.0012  Score=57.25  Aligned_cols=78  Identities=12%  Similarity=0.175  Sum_probs=50.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHH-cCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLAL-RGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.++||+||+|++|...++-+.. .|++|++++++.++++.+ ++   .  +.. ..  +|-.+  .+...+.++  ..
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~-~~---l--Gad-~v--i~~~~--~~~~~v~~~--~~  237 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWV-KS---L--GAH-HV--IDHSK--PLAAEVAAL--GL  237 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHH-HH---T--TCS-EE--ECTTS--CHHHHHHTT--CS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH-HH---c--CCC-EE--EeCCC--CHHHHHHHh--cC
Confidence            578999999999999777665554 488999999987664433 22   2  322 12  24433  233333333  23


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +++|+++.++|.
T Consensus       238 ~g~Dvvid~~g~  249 (363)
T 4dvj_A          238 GAPAFVFSTTHT  249 (363)
T ss_dssp             CCEEEEEECSCH
T ss_pred             CCceEEEECCCc
Confidence            579999999983

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.09  E-value=0.0032  Score=54.28  Aligned_cols=79  Identities=20%  Similarity=0.208  Sum_probs=52.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCC--CHHHHHHHHHHHhc
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS--SLASVRKFASEYNS  104 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--~~~si~~~~~~~~~  104 (255)
                      .|.++||+|+ |++|...++.+...|+ +|++++++.++++.. +++     +.. ..+  |..  +.++....+.+...
T Consensus       171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~-~vi--~~~~~~~~~~~~~i~~~~~  240 (356)
T 1pl8_A          171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEI-----GAD-LVL--QISKESPQEIARKVEGQLG  240 (356)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT-----TCS-EEE--ECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-----CCC-EEE--cCcccccchHHHHHHHHhC
Confidence            5789999996 8999998888888999 899999887654332 222     322 222  444  22333333333322


Q ss_pred             CCCCeeEEEEccCC
Q 025275          105 QGRPLNILINNAGI  118 (255)
Q Consensus       105 ~~g~id~lv~~ag~  118 (255)
                        +++|++|.++|.
T Consensus       241 --~g~D~vid~~g~  252 (356)
T 1pl8_A          241 --CKPEVTIECTGA  252 (356)
T ss_dssp             --SCCSEEEECSCC
T ss_pred             --CCCCEEEECCCC
Confidence              469999999983

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.09  E-value=0.0013  Score=57.28  Aligned_cols=79  Identities=15%  Similarity=0.189  Sum_probs=53.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-HHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-LASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~si~~~~~~~~~~  105 (255)
                      .|+++||+|+ |++|...++.+...|+ +|+++++++++++... ++     +.. ..  +|.++ .+++.+.+.++.. 
T Consensus       192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l-----Ga~-~v--i~~~~~~~~~~~~~~~~~~-  260 (374)
T 1cdo_A          192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF-----GAT-DF--VNPNDHSEPISQVLSKMTN-  260 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT-----TCC-EE--ECGGGCSSCHHHHHHHHHT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hh-----CCc-eE--EeccccchhHHHHHHHHhC-
Confidence            5789999995 9999999988888999 7999998887755432 22     322 12  34443 1234444444433 


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                       +++|++|.++|.
T Consensus       261 -~g~D~vid~~g~  272 (374)
T 1cdo_A          261 -GGVDFSLECVGN  272 (374)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCCCEEEECCCC
Confidence             479999999984

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.09  E-value=0.0021  Score=55.06  Aligned_cols=76  Identities=13%  Similarity=0.085  Sum_probs=52.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++||+|+ |++|...++-+...|++|++++++.++++.. ++   .  +.. ..  +|..+++..+.+.+    ..+
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~---l--Ga~-~~--i~~~~~~~~~~~~~----~~g  231 (340)
T 3s2e_A          166 PGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLA-RR---L--GAE-VA--VNARDTDPAAWLQK----EIG  231 (340)
T ss_dssp             TTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHH-HH---T--TCS-EE--EETTTSCHHHHHHH----HHS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HH---c--CCC-EE--EeCCCcCHHHHHHH----hCC
Confidence            5889999997 8999999988888999999999987765432 22   2  322 12  35554433333333    224


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++|.++|
T Consensus       232 ~~d~vid~~g  241 (340)
T 3s2e_A          232 GAHGVLVTAV  241 (340)
T ss_dssp             SEEEEEESSC
T ss_pred             CCCEEEEeCC
Confidence            7999999987

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.07  E-value=0.0015  Score=56.73  Aligned_cols=80  Identities=24%  Similarity=0.321  Sum_probs=52.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh-cC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN-SQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~-~~  105 (255)
                      .|.++||+|+ |++|...++-+...|+ +|++++++.++.+ ..+++     +.. ..  .|.++.+..+ .+.+.. ..
T Consensus       182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~-~a~~l-----Ga~-~v--i~~~~~~~~~-~i~~~~~~~  250 (370)
T 4ej6_A          182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRR-LAEEV-----GAT-AT--VDPSAGDVVE-AIAGPVGLV  250 (370)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHH-HHHHH-----TCS-EE--ECTTSSCHHH-HHHSTTSSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHH-HHHHc-----CCC-EE--ECCCCcCHHH-HHHhhhhcc
Confidence            5889999998 8999998888888999 7888888876543 33333     322 12  3555543222 233211 12


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                      .+++|++|.++|.
T Consensus       251 ~gg~Dvvid~~G~  263 (370)
T 4ej6_A          251 PGGVDVVIECAGV  263 (370)
T ss_dssp             TTCEEEEEECSCC
T ss_pred             CCCCCEEEECCCC
Confidence            3579999999983

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.06  E-value=0.0011  Score=57.23  Aligned_cols=75  Identities=21%  Similarity=0.322  Sum_probs=52.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++||+|+ |++|...++.+...|++|++++++.++.+...+++     +.. ..  .|..+.+.+    .++   .+
T Consensus       180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~l-----Ga~-~v--i~~~~~~~~----~~~---~~  243 (357)
T 2cf5_A          180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDL-----GAD-DY--VIGSDQAKM----SEL---AD  243 (357)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTS-----CCS-CE--EETTCHHHH----HHS---TT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHc-----CCc-ee--eccccHHHH----HHh---cC
Confidence            6889999995 99999999888889999999999887654433222     222 12  244454332    222   24


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|.++|.
T Consensus       244 g~D~vid~~g~  254 (357)
T 2cf5_A          244 SLDYVIDTVPV  254 (357)
T ss_dssp             TEEEEEECCCS
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=97.06  E-value=0.0012  Score=57.15  Aligned_cols=83  Identities=17%  Similarity=0.249  Sum_probs=50.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++||+||+|++|...++-+...|++++++.+..++.++..+.+++.  +.. ..+  |-.+. .. ..+.++....+
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~l--Ga~-~vi--~~~~~-~~-~~~~~~~~~~~  239 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSL--GAE-HVI--TEEEL-RR-PEMKNFFKDMP  239 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHT--TCS-EEE--EHHHH-HS-GGGGGTTSSSC
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhc--CCc-EEE--ecCcc-hH-HHHHHHHhCCC
Confidence            5889999999999999888877778999888877655433333334333  322 222  21111 11 11222222223


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|++|.++|
T Consensus       240 ~~Dvvid~~g  249 (357)
T 1zsy_A          240 QPRLALNCVG  249 (357)
T ss_dssp             CCSEEEESSC
T ss_pred             CceEEEECCC
Confidence            5999999987

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=97.01  E-value=0.0023  Score=55.61  Aligned_cols=79  Identities=16%  Similarity=0.187  Sum_probs=52.8

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ..|.++||+||+|++|...++-+...|++|+.+. +.++++ ..+++     +.. ..  +|..+++ +.+.+.++.  .
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~-~~~~l-----Ga~-~v--i~~~~~~-~~~~v~~~t--~  229 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFD-LAKSR-----GAE-EV--FDYRAPN-LAQTIRTYT--K  229 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHH-HHHHT-----TCS-EE--EETTSTT-HHHHHHHHT--T
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHH-HHHHc-----CCc-EE--EECCCch-HHHHHHHHc--c
Confidence            4688999999999999999998888999998886 555533 33332     322 22  2555443 333333332  2


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +++|++|.++|.
T Consensus       230 g~~d~v~d~~g~  241 (371)
T 3gqv_A          230 NNLRYALDCITN  241 (371)
T ss_dssp             TCCCEEEESSCS
T ss_pred             CCccEEEECCCc
Confidence            459999999984

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.00  E-value=0.00053  Score=57.54  Aligned_cols=46  Identities=13%  Similarity=0.178  Sum_probs=39.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVR   70 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~   70 (255)
                      ..++++++++|.|+ ||.|++++..|++.|+ +|.+++|+.++.+++.
T Consensus       117 ~~~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La  163 (282)
T 3fbt_A          117 RVEIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIY  163 (282)
T ss_dssp             TCCCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHC
T ss_pred             CCCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            45678999999997 6999999999999998 8999999987655443

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.00  E-value=0.0024  Score=54.75  Aligned_cols=82  Identities=16%  Similarity=0.131  Sum_probs=54.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhh---CC-CCceEEEEeCCCCHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKE---IP-SAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~---~~-~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      |..+.+++.|.|+ |.+|.++|..|+..|. +|.+.+++++.++.....+...   .. ..++.+.    +|.   +..+
T Consensus         5 ~~~~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t----~d~---~ea~   76 (331)
T 1pzg_A            5 LVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE----YSY---EAAL   76 (331)
T ss_dssp             CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE----CSH---HHHH
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEe----CCH---HHHh
Confidence            4444467999998 9999999999999998 9999999988776643333221   11 1122221    332   2233


Q ss_pred             HHHhcCCCCeeEEEEccCCCCC
Q 025275          100 SEYNSQGRPLNILINNAGIMAS  121 (255)
Q Consensus       100 ~~~~~~~g~id~lv~~ag~~~~  121 (255)
                      +       ..|++|.++|.+..
T Consensus        77 ~-------~aDiVi~a~g~p~~   91 (331)
T 1pzg_A           77 T-------GADCVIVTAGLTKV   91 (331)
T ss_dssp             T-------TCSEEEECCSCSSC
T ss_pred             C-------CCCEEEEccCCCCC
Confidence            3       57999999987644

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.99  E-value=0.0095  Score=50.17  Aligned_cols=117  Identities=12%  Similarity=0.096  Sum_probs=69.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhh---CCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKE---IPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++.|+|+ |.+|.+++..|++.|.  +|++.+++++.++.....+...   .+ ........  +|++    .+      
T Consensus         2 kI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~-~~~~i~~t--~d~~----a~------   67 (294)
T 1oju_A            2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGID-KYPKIVGG--ADYS----LL------   67 (294)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTT-CCCEEEEE--SCGG----GG------
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcC-CCCEEEEe--CCHH----Hh------
Confidence            5889999 9999999999999997  8999999987765322223221   11 11122211  1221    22      


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                       ...|++|.++|....+- .+-.   +.++.|.    -+++...+.+.+.    ...+.++++|.....
T Consensus        68 -~~aDiVViaag~~~kpG-~~R~---dl~~~N~----~i~~~i~~~i~~~----~p~a~iivvsNPvd~  123 (294)
T 1oju_A           68 -KGSEIIVVTAGLARKPG-MTRL---DLAHKNA----GIIKDIAKKIVEN----APESKILVVTNPMDV  123 (294)
T ss_dssp             -TTCSEEEECCCCCCCSS-CCHH---HHHHHHH----HHHHHHHHHHHTT----STTCEEEECSSSHHH
T ss_pred             -CCCCEEEECCCCCCCCC-CcHH---HHHHHHH----HHHHHHHHHHHhh----CCCeEEEEeCCcchH
Confidence             25799999999865432 2322   2344444    3444444555442    235677777776543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.98  E-value=0.0018  Score=56.24  Aligned_cols=79  Identities=15%  Similarity=0.204  Sum_probs=53.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-HHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-LASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~si~~~~~~~~~~  105 (255)
                      .|+++||+|+ |++|...++.+...|+ +|++++++.++++.. +++     +.. ..  +|.++ .+++.+.+.++.. 
T Consensus       191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~l-----Ga~-~v--i~~~~~~~~~~~~~~~~~~-  259 (374)
T 2jhf_A          191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEV-----GAT-EC--VNPQDYKKPIQEVLTEMSN-  259 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT-----TCS-EE--ECGGGCSSCHHHHHHHHTT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh-----CCc-eE--ecccccchhHHHHHHHHhC-
Confidence            5789999995 9999999988888999 799999988775443 222     322 22  24443 1224444554433 


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                       +++|++|.++|.
T Consensus       260 -~g~D~vid~~g~  271 (374)
T 2jhf_A          260 -GGVDFSFEVIGR  271 (374)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCCcEEEECCCC
Confidence             479999999984

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.98  E-value=0.0018  Score=55.92  Aligned_cols=74  Identities=18%  Similarity=0.222  Sum_probs=50.7

Q ss_pred             CcEEEEecCCCchHHHH-HHHH-HHcCCe-EEEEEeccc---hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           29 GLTAIVTGASSGIGTET-ARVL-ALRGVH-VIMAVRNMA---AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        29 ~k~vlItG~s~giG~~i-a~~L-~~~G~~-Vi~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +.++||+|+ |++|... ++-+ ...|++ |++++++.+   +++.+ +++     +.  ..+  |..+++ +.+ +.++
T Consensus       173 ~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~-~~l-----Ga--~~v--~~~~~~-~~~-i~~~  239 (357)
T 2b5w_A          173 PSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII-EEL-----DA--TYV--DSRQTP-VED-VPDV  239 (357)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHH-HHT-----TC--EEE--ETTTSC-GGG-HHHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHH-HHc-----CC--ccc--CCCccC-HHH-HHHh
Confidence            389999999 9999988 7666 578997 999999887   54433 222     32  223  555432 333 4444


Q ss_pred             hcCCCCeeEEEEccCC
Q 025275          103 NSQGRPLNILINNAGI  118 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~  118 (255)
                       .  +++|++|.++|.
T Consensus       240 -~--gg~Dvvid~~g~  252 (357)
T 2b5w_A          240 -Y--EQMDFIYEATGF  252 (357)
T ss_dssp             -S--CCEEEEEECSCC
T ss_pred             -C--CCCCEEEECCCC
Confidence             2  379999999983

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.97  E-value=0.00092  Score=54.16  Aligned_cols=72  Identities=17%  Similarity=0.111  Sum_probs=53.1

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      .+.++|.|+ |.+|+.+++.|.+.|+ |++++++++..+..    . .    .+.++..|.++++.+..+      ....
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~----~-~----~~~~i~gd~~~~~~l~~a------~i~~   71 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVL----R-S----GANFVHGDPTRVSDLEKA------NVRG   71 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHH----H-T----TCEEEESCTTCHHHHHHT------TCTT
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHH----h-c----CCeEEEcCCCCHHHHHhc------Ccch
Confidence            356888897 8999999999999999 99999987764332    2 1    367888999998765543      1125


Q ss_pred             eeEEEEccC
Q 025275          109 LNILINNAG  117 (255)
Q Consensus       109 id~lv~~ag  117 (255)
                      .|.+|.+.+
T Consensus        72 ad~vi~~~~   80 (234)
T 2aef_A           72 ARAVIVDLE   80 (234)
T ss_dssp             CSEEEECCS
T ss_pred             hcEEEEcCC
Confidence            688887664

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=96.97  E-value=0.014  Score=49.63  Aligned_cols=119  Identities=15%  Similarity=0.100  Sum_probs=72.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHc-C--CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEe-CCCCHHHHHHHHHHHhcCC
Q 025275           31 TAIVTGASSGIGTETARVLALR-G--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL-DVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~-G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++.|+||+|.+|.+++..|+++ +  .+++++++++ .+.-....+...  ...+..... .-.+++    .++      
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~--~~~~~v~~~~~~~~~~----~~~------   68 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI--PTAVKIKGFSGEDATP----ALE------   68 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTS--CSSEEEEEECSSCCHH----HHT------
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCC--CCCceEEEecCCCcHH----HhC------
Confidence            5889999999999999999886 5  3799999987 444333444432  112222211 111222    233      


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                       ..|++|.+||.+..+- ++   -.+.++.|..-...+++.+.++-        ..+.++++|......
T Consensus        69 -~aDivii~ag~~rkpG-~~---R~dll~~N~~I~~~i~~~i~~~~--------p~a~vlvvtNPvd~~  124 (312)
T 3hhp_A           69 -GADVVLISAGVARKPG-MD---RSDLFNVNAGIVKNLVQQVAKTC--------PKACIGIITNPVNTT  124 (312)
T ss_dssp             -TCSEEEECCSCSCCTT-CC---HHHHHHHHHHHHHHHHHHHHHHC--------TTSEEEECSSCHHHH
T ss_pred             -CCCEEEEeCCCCCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHC--------CCcEEEEecCcchhH
Confidence             5899999999865432 22   23446666655555555544432        346788888766544

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.97  E-value=0.0011  Score=56.98  Aligned_cols=69  Identities=19%  Similarity=0.257  Sum_probs=49.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++||+|+ |++|...++.+...|++|++++++.++.+.+. ++     +....+     ++.+.+.       +   
T Consensus       176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~v~-----~~~~~~~-------~---  233 (348)
T 3two_A          176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDAL-SM-----GVKHFY-----TDPKQCK-------E---  233 (348)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHH-HT-----TCSEEE-----SSGGGCC-------S---
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-hc-----CCCeec-----CCHHHHh-------c---
Confidence            5889999997 99999998888889999999999988765432 22     322222     3333221       1   


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|.++|.
T Consensus       234 ~~D~vid~~g~  244 (348)
T 3two_A          234 ELDFIISTIPT  244 (348)
T ss_dssp             CEEEEEECCCS
T ss_pred             CCCEEEECCCc
Confidence            69999999985

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.96  E-value=0.0022  Score=55.69  Aligned_cols=79  Identities=14%  Similarity=0.173  Sum_probs=53.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-HHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-LASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~si~~~~~~~~~~  105 (255)
                      .|.++||+|+ |++|...++.+...|+ +|++++++.++++.+ +++     +.. ..  +|.++ .+++.+.+.++.. 
T Consensus       190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~-~~l-----Ga~-~v--i~~~~~~~~~~~~v~~~~~-  258 (373)
T 2fzw_A          190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARA-KEF-----GAT-EC--INPQDFSKPIQEVLIEMTD-  258 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHH-----TCS-EE--ECGGGCSSCHHHHHHHHTT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc-----CCc-eE--eccccccccHHHHHHHHhC-
Confidence            5789999996 9999999988888999 799999888775543 333     322 12  24433 1234444444433 


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                       +++|++|.++|.
T Consensus       259 -~g~D~vid~~g~  270 (373)
T 2fzw_A          259 -GGVDYSFECIGN  270 (373)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCCCEEEECCCc
Confidence             479999999984

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.96  E-value=0.0022  Score=59.05  Aligned_cols=83  Identities=13%  Similarity=0.216  Sum_probs=63.4

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc-------------------chHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM-------------------AAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++++|+|.|+ ||+|.++++.|+..|. ++.++|++.                   .+.+.+.+.+++..|+.++..+.
T Consensus       324 L~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~  402 (615)
T 4gsl_A          324 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK  402 (615)
T ss_dssp             HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEee
Confidence            57889999987 6999999999999997 799998753                   56778888898888887888877


Q ss_pred             eCC-------CCH-------HHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           87 LDV-------SSL-------ASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        87 ~Dl-------~~~-------~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      .++       +++       +.+..+++       ..|+||.+..
T Consensus       403 ~~Ipm~gh~v~~e~~~~l~~~~l~~ll~-------~~DlVvd~tD  440 (615)
T 4gsl_A          403 LSIPMIGHKLVNEEAQHKDFDRLRALIK-------EHDIIFLLVD  440 (615)
T ss_dssp             CCCCCTTCCCSCHHHHHHHHHHHHHHHH-------HCSEEEECCS
T ss_pred             ccccccCccccchhhhcCCHHHHHHHhh-------cCCEEEecCC
Confidence            655       222       22333333       4799998875

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=96.96  E-value=0.0017  Score=56.69  Aligned_cols=81  Identities=19%  Similarity=0.248  Sum_probs=53.0

Q ss_pred             CCCcEEEEec-CCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTG-ASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG-~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ..|.++||.| |+|++|...++-+...|++|++++++.++++.+. +   .  +.. ..+  |..+++..+.+.+.... 
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~-~---l--Ga~-~~~--~~~~~~~~~~v~~~t~~-  238 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLK-A---Q--GAV-HVC--NAASPTFMQDLTEALVS-  238 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHH-H---T--TCS-CEE--ETTSTTHHHHHHHHHHH-
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-h---C--CCc-EEE--eCCChHHHHHHHHHhcC-
Confidence            3578899997 9999999998888889999999998877654332 2   2  322 122  44443322222222111 


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                       .++|++|.++|.
T Consensus       239 -~g~d~v~d~~g~  250 (379)
T 3iup_A          239 -TGATIAFDATGG  250 (379)
T ss_dssp             -HCCCEEEESCEE
T ss_pred             -CCceEEEECCCc
Confidence             269999999984

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.94  E-value=0.0012  Score=52.49  Aligned_cols=42  Identities=17%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHH
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA   72 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~   72 (255)
                      +++|+||+|.+|.++++.|++.|++|++.+|+.++.+...+.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~   43 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAE   43 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            588999999999999999999999999999998776655544

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.94  E-value=0.0017  Score=55.23  Aligned_cols=73  Identities=15%  Similarity=0.321  Sum_probs=49.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.+++|+||+|++|...++.+...|++|+.+++.. + .+..+++     +.. ..  .|..+.+.+...       ..
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-~-~~~~~~l-----Ga~-~~--i~~~~~~~~~~~-------~~  214 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-N-HAFLKAL-----GAE-QC--INYHEEDFLLAI-------ST  214 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-H-HHHHHHH-----TCS-EE--EETTTSCHHHHC-------CS
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-h-HHHHHHc-----CCC-EE--EeCCCcchhhhh-------cc
Confidence            588999999999999999999989999999887543 3 2333333     322 22  244443322211       14


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|+++.++|
T Consensus       215 g~D~v~d~~g  224 (321)
T 3tqh_A          215 PVDAVIDLVG  224 (321)
T ss_dssp             CEEEEEESSC
T ss_pred             CCCEEEECCC
Confidence            7999999998

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.91  E-value=0.0059  Score=52.33  Aligned_cols=77  Identities=16%  Similarity=0.215  Sum_probs=51.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHc--CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALR--GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .|.++||+|+ |++|...++.+...  |++|++++++.++.+.. +++     +.. ..  +|..+.   ....+++.. 
T Consensus       170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~-~~l-----Ga~-~v--i~~~~~---~~~~~~~~~-  235 (344)
T 2h6e_A          170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFA-LEL-----GAD-YV--SEMKDA---ESLINKLTD-  235 (344)
T ss_dssp             SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHH-HHH-----TCS-EE--ECHHHH---HHHHHHHHT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHH-HHh-----CCC-EE--eccccc---hHHHHHhhc-
Confidence            6899999999 89999988888888  99999999887765433 233     321 12  233320   122333332 


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                      ..++|++|.++|.
T Consensus       236 g~g~D~vid~~g~  248 (344)
T 2h6e_A          236 GLGASIAIDLVGT  248 (344)
T ss_dssp             TCCEEEEEESSCC
T ss_pred             CCCccEEEECCCC
Confidence            2369999999984

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.91  E-value=0.0024  Score=55.53  Aligned_cols=79  Identities=20%  Similarity=0.228  Sum_probs=53.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-HHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-LASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~si~~~~~~~~~~  105 (255)
                      .|.++||+|+ |++|...++.+...|+ +|++++++.++++.+ +++     +.. ..  +|.++ .+++.+.+.++.. 
T Consensus       195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~-~v--i~~~~~~~~~~~~v~~~~~-  263 (376)
T 1e3i_A          195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KAL-----GAT-DC--LNPRELDKPVQDVITELTA-  263 (376)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT-----TCS-EE--ECGGGCSSCHHHHHHHHHT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh-----CCc-EE--EccccccchHHHHHHHHhC-
Confidence            5789999996 9999999888888999 799999988775443 232     322 12  24442 1223444444433 


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                       +++|++|.++|.
T Consensus       264 -~g~Dvvid~~G~  275 (376)
T 1e3i_A          264 -GGVDYSLDCAGT  275 (376)
T ss_dssp             -SCBSEEEESSCC
T ss_pred             -CCccEEEECCCC
Confidence             379999999984

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.89  E-value=0.0037  Score=54.96  Aligned_cols=79  Identities=18%  Similarity=0.333  Sum_probs=52.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.++||+|+ |++|...++-+...|+ +|++++++.++++. .+++     +.. ..  +|..+.+..+ .+.++.. .
T Consensus       213 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~-~~~l-----Ga~-~v--i~~~~~~~~~-~i~~~t~-g  280 (404)
T 3ip1_A          213 PGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNL-AKEL-----GAD-HV--IDPTKENFVE-AVLDYTN-G  280 (404)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHH-HHHH-----TCS-EE--ECTTTSCHHH-HHHHHTT-T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH-HHHc-----CCC-EE--EcCCCCCHHH-HHHHHhC-C
Confidence            5889999998 8999998888888999 89999888766443 3333     322 22  2544443333 3333321 2


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      .++|++|.++|.
T Consensus       281 ~g~D~vid~~g~  292 (404)
T 3ip1_A          281 LGAKLFLEATGV  292 (404)
T ss_dssp             CCCSEEEECSSC
T ss_pred             CCCCEEEECCCC
Confidence            269999999984

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=96.89  E-value=0.0028  Score=53.80  Aligned_cols=73  Identities=21%  Similarity=0.294  Sum_probs=49.5

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      |+ +||+||+|++|...++-+...|++|++++++.++.+.+. ++     +.... +  |..+.+.    ++++  ..++
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~v-i--~~~~~~~----~~~~--~~~~  211 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLK-SL-----GANRI-L--SRDEFAE----SRPL--EKQL  211 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH-HH-----TCSEE-E--EGGGSSC----CCSS--CCCC
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hc-----CCCEE-E--ecCCHHH----HHhh--cCCC
Confidence            45 999999999999999988889999999999887755443 33     32222 2  2222111    1111  1247


Q ss_pred             eeEEEEccC
Q 025275          109 LNILINNAG  117 (255)
Q Consensus       109 id~lv~~ag  117 (255)
                      +|++|.++|
T Consensus       212 ~d~v~d~~g  220 (324)
T 3nx4_A          212 WAGAIDTVG  220 (324)
T ss_dssp             EEEEEESSC
T ss_pred             ccEEEECCC
Confidence            999999887

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=96.85  E-value=0.022  Score=49.05  Aligned_cols=123  Identities=15%  Similarity=0.040  Sum_probs=70.0

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-------eEEEEEeccc--hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHH
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-------HVIMAVRNMA--AGKDVREAIVKEIPSAKVDAMELDVSSLASVRK   97 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-------~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~   97 (255)
                      ++.-+|.|+||+|+||..++..|++...       ++.+.+..+.  .++-..-.+..............  +|.   ..
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~--~~~---~~   96 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVT--ADP---RV   96 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEE--SCH---HH
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEc--CCh---HH
Confidence            3445899999999999999999987643       6888887653  22333333433211111112211  121   12


Q ss_pred             HHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           98 FASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        98 ~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      .+       ...|++|..||.+..+- ++-+   +.++.|..=.-.+.+.+.++-       .+...|+.+|...
T Consensus        97 a~-------~~advVvi~aG~prkpG-mtR~---DLl~~Na~I~~~~~~~i~~~a-------~~~~~vlvvsNPv  153 (345)
T 4h7p_A           97 AF-------DGVAIAIMCGAFPRKAG-MERK---DLLEMNARIFKEQGEAIAAVA-------ASDCRVVVVGNPA  153 (345)
T ss_dssp             HT-------TTCSEEEECCCCCCCTT-CCHH---HHHHHHHHHHHHHHHHHHHHS-------CTTCEEEECSSSH
T ss_pred             Hh-------CCCCEEEECCCCCCCCC-CCHH---HHHHHhHHHHHHHHHHHHhhc-------cCceEEEEeCCCc
Confidence            22       36899999999876543 3333   345666554444444443332       1234677777764

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.84  E-value=0.0018  Score=53.91  Aligned_cols=43  Identities=21%  Similarity=0.200  Sum_probs=39.0

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHH
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAI   73 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~   73 (255)
                      +|+++|.|+ ||.|++++..|++.|.+|.+.+|+.++.+++. ++
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~  160 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL  160 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC
Confidence            799999997 89999999999999999999999999887776 44

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.83  E-value=0.0017  Score=56.55  Aligned_cols=79  Identities=9%  Similarity=0.119  Sum_probs=54.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-HHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-LASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~si~~~~~~~~~~  105 (255)
                      .|.++||+|+ |++|...++-+...|+ +|++++++.++++. .+++     +.. ..  +|..+ .+.+.+.+.++.. 
T Consensus       193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~-a~~l-----Ga~-~v--i~~~~~~~~~~~~i~~~~~-  261 (378)
T 3uko_A          193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYET-AKKF-----GVN-EF--VNPKDHDKPIQEVIVDLTD-  261 (378)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHH-HHTT-----TCC-EE--ECGGGCSSCHHHHHHHHTT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH-HHHc-----CCc-EE--EccccCchhHHHHHHHhcC-
Confidence            5889999998 9999999888888999 79999999877543 2222     322 12  24432 2234444554433 


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                       +++|++|.++|.
T Consensus       262 -gg~D~vid~~g~  273 (378)
T 3uko_A          262 -GGVDYSFECIGN  273 (378)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCCCEEEECCCC
Confidence             379999999984

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.82  E-value=0.022  Score=48.37  Aligned_cols=121  Identities=10%  Similarity=0.135  Sum_probs=73.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      +.+++.|+|+ |.+|..++..|+.+|.  +|++.+.++++++.....+....+  +..+.+. .|  +.+    .     
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~-~~--~~~----a-----   71 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK-AG--EYS----D-----   71 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEE-EC--CGG----G-----
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEE-eC--CHH----H-----
Confidence            3467999998 9999999999999884  799999987766543333332111  1222222 22  221    1     


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                        +...|++|..+|....+- .+-+   +.+..|+.    +++...+.+.+.    ...+.+|++|......
T Consensus        72 --~~~aDvVvi~ag~~~~~g-~~r~---dl~~~n~~----i~~~i~~~i~~~----~p~a~viv~tNPv~~~  129 (317)
T 3d0o_A           72 --CHDADLVVICAGAAQKPG-ETRL---DLVSKNLK----IFKSIVGEVMAS----KFDGIFLVATNPVDIL  129 (317)
T ss_dssp             --GTTCSEEEECCCCCCCTT-CCHH---HHHHHHHH----HHHHHHHHHHHT----TCCSEEEECSSSHHHH
T ss_pred             --hCCCCEEEECCCCCCCCC-CcHH---HHHHHHHH----HHHHHHHHHHHh----CCCcEEEEecCcHHHH
Confidence              236899999999764432 2222   23333433    444455555542    3467888888776554

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.80  E-value=0.032  Score=47.68  Aligned_cols=121  Identities=11%  Similarity=-0.015  Sum_probs=74.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC-CCceEEEE-eCCCCHHHHHHHHHHHh
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP-SAKVDAME-LDVSSLASVRKFASEYN  103 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~-~Dl~~~~si~~~~~~~~  103 (255)
                      ..+++.|+|+ |.+|..++..|+..|.  +|++.+++++.++.....+....+ ........ .|..             
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~-------------   85 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS-------------   85 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC-------------
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH-------------
Confidence            3467999999 9999999999999997  899999988776655544443211 00111121 1211             


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                       .+...|++|.+||....+-+.-.+    .+..|+.-    .+...+.+.+.    ...+.++++|......
T Consensus        86 -~~~daDiVIitaG~p~kpG~tR~d----ll~~N~~I----~k~i~~~I~k~----~P~a~ilvvtNPvdi~  144 (330)
T 3ldh_A           86 -VSAGSKLVVITAGARQQEGESRLN----LVQRNVNI----FKFIIPNIVKH----SPDCLKELHPELGTDK  144 (330)
T ss_dssp             -SCSSCSEEEECCSCCCCSSCCTTG----GGHHHHHH----HHHHHHHHHHH----CTTCEEEECSSSHHHH
T ss_pred             -HhCCCCEEEEeCCCCCCCCCCHHH----HHHhhHHH----HHHHHHHHHhh----CCCceEEeCCCccHHH
Confidence             134689999999987554322222    23344433    44444444432    2467899998876544

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.76  E-value=0.0032  Score=54.68  Aligned_cols=79  Identities=16%  Similarity=0.173  Sum_probs=52.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-HHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-LASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~si~~~~~~~~~~  105 (255)
                      .|.++||+|+ |++|...++.+...|+ +|++++++.++++.. +++     +.. ..  +|..+ .+.+.+.+.++.. 
T Consensus       191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~-~v--i~~~~~~~~~~~~i~~~t~-  259 (373)
T 1p0f_A          191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA-IEL-----GAT-EC--LNPKDYDKPIYEVICEKTN-  259 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHT-----TCS-EE--ECGGGCSSCHHHHHHHHTT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc-----CCc-EE--EecccccchHHHHHHHHhC-
Confidence            4789999995 9999998888888899 799999888775443 232     322 22  24332 1224444444433 


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                       +++|++|.++|.
T Consensus       260 -gg~Dvvid~~g~  271 (373)
T 1p0f_A          260 -GGVDYAVECAGR  271 (373)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCCCEEEECCCC
Confidence             479999999984

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.76  E-value=0.0034  Score=57.69  Aligned_cols=84  Identities=13%  Similarity=0.219  Sum_probs=62.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+++..|+.++..+
T Consensus       324 kL~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~  402 (598)
T 3vh1_A          324 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV  402 (598)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEE
Confidence            356789999986 5899999999999997 68888654                   35778888889888787778777


Q ss_pred             EeCCC--------------CHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           86 ELDVS--------------SLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        86 ~~Dl~--------------~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      ..++.              +.+.+..+++       ..|+||.+..
T Consensus       403 ~~~I~~pgh~i~~~~~~~l~~~~l~~li~-------~~DvVvdatD  441 (598)
T 3vh1_A          403 KLSIPMIGHKLVNEEAQHKDFDRLRALIK-------EHDIIFLLVD  441 (598)
T ss_dssp             CCCCCCSSCCCCSHHHHHHHHHHHHHHHH-------HCSEEEECCS
T ss_pred             eccccccCcccccccccccCHHHHHHHHh-------cCCEEEECCC
Confidence            76651              1233444444       3699998764

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.72  E-value=0.0083  Score=51.10  Aligned_cols=120  Identities=16%  Similarity=0.138  Sum_probs=68.0

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCC-CceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPS-AKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+++.|+|+ |.+|..++..|+..|.  +|++.|.++++++.....+....+- ..+.+. .  ++.           +.
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~--~~~-----------~a   71 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-A--GDY-----------SD   71 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CG-----------GG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE-E--CCH-----------HH
Confidence            356888898 9999999999999987  8999999987766544444332110 111111 1  121           11


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      +...|++|.++|....+. .+-   .+.+..|+.-...+++.+.++        ...+.||++|......
T Consensus        72 ~~~aDvVii~~g~p~k~g-~~r---~dl~~~n~~i~~~i~~~i~~~--------~p~a~viv~tNPv~~~  129 (318)
T 1y6j_A           72 VKDCDVIVVTAGANRKPG-ETR---LDLAKKNVMIAKEVTQNIMKY--------YNHGVILVVSNPVDII  129 (318)
T ss_dssp             GTTCSEEEECCCC-------CH---HHHHHHHHHHHHHHHHHHHHH--------CCSCEEEECSSSHHHH
T ss_pred             hCCCCEEEEcCCCCCCCC-cCH---HHHHHhhHHHHHHHHHHHHHh--------CCCcEEEEecCcHHHH
Confidence            336899999999754322 221   233455555444444444433        2367888887766554

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.70  E-value=0.021  Score=48.36  Aligned_cols=119  Identities=16%  Similarity=0.192  Sum_probs=74.2

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++.|+|+ |.+|..++..|+..+  .+|++.|+++++++.....+....+ ...+.+. .|  +.+.    +       
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~-~~--~~~a----~-------   65 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVW-AG--SYGD----L-------   65 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEE-EC--CGGG----G-------
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEE-EC--CHHH----h-------
Confidence            36889998 999999999999987  4799999998777665555544211 1122222 22  2221    2       


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      ...|++|..+|....+- .+-+   +.+..|..    +++...+.+.+.    ...+.+|++|......
T Consensus        66 ~~aD~Vii~ag~~~~~g-~~r~---dl~~~n~~----i~~~i~~~i~~~----~p~a~iiv~tNPv~~~  122 (310)
T 2xxj_A           66 EGARAVVLAAGVAQRPG-ETRL---QLLDRNAQ----VFAQVVPRVLEA----APEAVLLVATNPVDVM  122 (310)
T ss_dssp             TTEEEEEECCCCCCCTT-CCHH---HHHHHHHH----HHHHHHHHHHHH----CTTCEEEECSSSHHHH
T ss_pred             CCCCEEEECCCCCCCCC-cCHH---HHHHhhHH----HHHHHHHHHHHH----CCCcEEEEecCchHHH
Confidence            36899999999765432 2222   23344444    444444444443    2467899988877654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.68  E-value=0.0031  Score=55.55  Aligned_cols=43  Identities=16%  Similarity=0.045  Sum_probs=37.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV   69 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~   69 (255)
                      .+.+++++|+|+ |.+|+.+++.+...|++|++++++.+.++..
T Consensus       169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          169 KVPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            467899999996 8999999999999999999999998776553

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.64  E-value=0.0006  Score=56.31  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=35.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKD   68 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~   68 (255)
                      .+++ +++|.|+ ||.|++++..|++.|+ +|++.+|+.++.++
T Consensus       106 ~~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~  147 (253)
T 3u62_A          106 EVKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKA  147 (253)
T ss_dssp             CCCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred             CCCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            3577 8999987 8999999999999998 89999999766443

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.63  E-value=0.022  Score=47.85  Aligned_cols=39  Identities=21%  Similarity=0.197  Sum_probs=34.4

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV   69 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~   69 (255)
                      +++.|.|+ |.+|.+||..|++.|++|++.+|+++.++..
T Consensus        16 ~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            56888887 8999999999999999999999998876654

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=96.63  E-value=0.0042  Score=55.22  Aligned_cols=64  Identities=20%  Similarity=0.271  Sum_probs=50.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++.+|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+...+.+++..|+.++..+.
T Consensus        38 L~~~~VlvvG~-GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~  116 (434)
T 1tt5_B           38 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  116 (434)
T ss_dssp             HHTCCEEEECS-STHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEE
T ss_pred             hcCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEe
Confidence            36788999987 7899999999999997 68888753                   146677788888877777777776


Q ss_pred             eCCCC
Q 025275           87 LDVSS   91 (255)
Q Consensus        87 ~Dl~~   91 (255)
                      .++++
T Consensus       117 ~~i~~  121 (434)
T 1tt5_B          117 NKIQD  121 (434)
T ss_dssp             SCGGG
T ss_pred             cccch
Confidence            65543

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.61  E-value=0.003  Score=54.86  Aligned_cols=47  Identities=19%  Similarity=0.217  Sum_probs=41.5

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAI   73 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~   73 (255)
                      +++||+++|.|. |.+|..+|+.|.+.|++|++.+++.+.+++..+++
T Consensus       170 ~L~GktV~V~G~-G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~  216 (364)
T 1leh_A          170 SLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE  216 (364)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred             CCCcCEEEEECc-hHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc
Confidence            789999999997 88999999999999999999999887777666654

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.60  E-value=0.0031  Score=52.66  Aligned_cols=41  Identities=29%  Similarity=0.319  Sum_probs=36.9

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      ...+++||.++|.|.++-+|+.+|..|++.|++|.++.+..
T Consensus       154 ~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t  194 (285)
T 3p2o_A          154 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT  194 (285)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             hCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence            34678999999999999999999999999999999987654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.60  E-value=0.02  Score=48.94  Aligned_cols=120  Identities=13%  Similarity=0.182  Sum_probs=73.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+++.|+|+ |.+|..++..|+..+.  +|++.|++.++++.....+....+ ...+.+. .|  +.+.    +      
T Consensus         9 ~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~~--~~~a----~------   74 (326)
T 2zqz_A            9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY-SA--EYSD----A------   74 (326)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE-EC--CGGG----G------
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEE-EC--CHHH----h------
Confidence            367999999 9999999999999885  799999988777665555543211 1122222 22  2221    2      


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                       ...|++|..+|....+- .+-+   +.+..|+.    +++...+.+.+.    ...+.||++|......
T Consensus        75 -~~aDvVii~ag~~~k~g-~~R~---dl~~~n~~----i~~~i~~~i~~~----~p~a~iiv~tNPv~~~  131 (326)
T 2zqz_A           75 -KDADLVVITAGAPQKPG-ETRL---DLVNKNLK----ILKSIVDPIVDS----GFNGIFLVAANPVDIL  131 (326)
T ss_dssp             -GGCSEEEECCCCC------CHH---HHHHHHHH----HHHHHHHHHHHH----TCCSEEEECSSSHHHH
T ss_pred             -CCCCEEEEcCCCCCCCC-CCHH---HHHHHHHH----HHHHHHHHHHHH----CCCeEEEEeCCcHHHH
Confidence             25899999999764332 2222   23444444    444444555443    2467899988877654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.60  E-value=0.0065  Score=53.14  Aligned_cols=79  Identities=22%  Similarity=0.233  Sum_probs=51.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.++||.|+ |++|...++-+...|+ .|++++++.++++.. ++   .  +.  ..  +|.++.+.+.+.+.++.. .
T Consensus       185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a-~~---l--Ga--~~--i~~~~~~~~~~~v~~~t~-g  252 (398)
T 1kol_A          185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KA---Q--GF--EI--ADLSLDTPLHEQIAALLG-E  252 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HH---T--TC--EE--EETTSSSCHHHHHHHHHS-S
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHH-HH---c--CC--cE--EccCCcchHHHHHHHHhC-C
Confidence            5789999995 9999988887777899 688888887664433 22   2  33  22  355443323333333321 1


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      .++|++|.++|.
T Consensus       253 ~g~Dvvid~~G~  264 (398)
T 1kol_A          253 PEVDCAVDAVGF  264 (398)
T ss_dssp             SCEEEEEECCCT
T ss_pred             CCCCEEEECCCC
Confidence            369999999985

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.59  E-value=0.012  Score=50.03  Aligned_cols=119  Identities=18%  Similarity=0.216  Sum_probs=70.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++.|+|+ |.+|.+++..|++.|.  +|++.++++++++.....+.....  .........|  ++           +.+
T Consensus         2 kv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~~-----------~a~   67 (314)
T 3nep_X            2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--DY-----------GPT   67 (314)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--SS-----------GGG
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--CH-----------HHh
Confidence            5788996 9999999999999986  899999998876544444432100  1122222122  21           122


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      ...|++|.++|....+-. +-   .+.++.|+.    +++...+.+.+.    .+.+.++++|......
T Consensus        68 ~~aDvVii~ag~~~kpG~-~R---~dl~~~N~~----i~~~i~~~i~~~----~p~a~vivvtNPvd~~  124 (314)
T 3nep_X           68 EDSDVCIITAGLPRSPGM-SR---DDLLAKNTE----IVGGVTEQFVEG----SPDSTIIVVANPLDVM  124 (314)
T ss_dssp             TTCSEEEECCCC--------C---HHHHHHHHH----HHHHHHHHHHTT----CTTCEEEECCSSHHHH
T ss_pred             CCCCEEEECCCCCCCCCC-CH---HHHHHhhHH----HHHHHHHHHHHh----CCCcEEEecCCchhHH
Confidence            368999999997654322 21   233444443    344455555442    3467888888876544

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.58  E-value=0.14  Score=43.28  Aligned_cols=119  Identities=13%  Similarity=0.161  Sum_probs=71.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++.|+|+ |.+|..++..|+..|.  +|++.+++++.++.....+....+  +..+.+.. |  +.+           .
T Consensus         7 ~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~~~-----------a   71 (316)
T 1ldn_A            7 ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--DYD-----------D   71 (316)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--CGG-----------G
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--cHH-----------H
Confidence            67999998 9999999999999885  799999997755544444443221  11233331 1  211           1


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      +...|++|.+++....+.. +-.+   .+..|.    -+.+...+.+.+.    ...+.++++|......
T Consensus        72 l~~aDvViia~~~~~~~g~-~r~d---l~~~n~----~i~~~i~~~i~~~----~p~a~~iv~tNPv~~~  129 (316)
T 1ldn_A           72 CRDADLVVICAGANQKPGE-TRLD---LVDKNI----AIFRSIVESVMAS----GFQGLFLVATNPVDIL  129 (316)
T ss_dssp             TTTCSEEEECCSCCCCTTT-CSGG---GHHHHH----HHHHHHHHHHHHH----TCCSEEEECSSSHHHH
T ss_pred             hCCCCEEEEcCCCCCCCCC-CHHH---HHHcCh----HHHHHHHHHHHHH----CCCCEEEEeCCchHHH
Confidence            2368999999998654432 2221   233332    3445555555543    2356778887766544

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.58  E-value=0.0084  Score=51.94  Aligned_cols=78  Identities=12%  Similarity=0.114  Sum_probs=51.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|+++||+|+ |++|...++.+...|+ .|++++++.++++.. +++     +.. ..+  |..+.+ +.+.+.+...  
T Consensus       190 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~-~vi--~~~~~~-~~~~~~~~~~--  256 (371)
T 1f8f_A          190 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELA-KQL-----GAT-HVI--NSKTQD-PVAAIKEITD--  256 (371)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HHH-----TCS-EEE--ETTTSC-HHHHHHHHTT--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc-----CCC-EEe--cCCccC-HHHHHHHhcC--
Confidence            5789999995 8999998888888899 699999887664433 333     322 222  443332 2223333322  


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +++|++|.++|.
T Consensus       257 gg~D~vid~~g~  268 (371)
T 1f8f_A          257 GGVNFALESTGS  268 (371)
T ss_dssp             SCEEEEEECSCC
T ss_pred             CCCcEEEECCCC
Confidence            379999999983

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.58  E-value=0.019  Score=47.86  Aligned_cols=42  Identities=21%  Similarity=0.188  Sum_probs=35.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA   72 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~   72 (255)
                      +++.|.|+ |.+|.+||+.|++.|++|++.+++++.++...+.
T Consensus         5 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~   46 (283)
T 4e12_A            5 TNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKR   46 (283)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence            56777765 7899999999999999999999998887766655

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.52  E-value=0.0016  Score=55.44  Aligned_cols=86  Identities=20%  Similarity=0.127  Sum_probs=58.6

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceE-EEEeCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVD-AMELDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..++.|++++|.|++.-+|+.+|+.|+..|++|.+++|+...+.+..+++     ....+ ...+..++++++.+.+.+ 
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~l-----a~~~~~~t~~~~t~~~~L~e~l~~-  245 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESL-----KLNKHHVEDLGEYSEDLLKKCSLD-  245 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCS-----SCCCCEEEEEEECCHHHHHHHHHH-
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHH-----hhhcccccccccccHhHHHHHhcc-
Confidence            44789999999999999999999999999999999988743321111111     11111 111122445677777775 


Q ss_pred             hcCCCCeeEEEEccCCCCC
Q 025275          103 NSQGRPLNILINNAGIMAS  121 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~  121 (255)
                            .|+||...|...+
T Consensus       246 ------ADIVIsAtg~p~~  258 (320)
T 1edz_A          246 ------SDVVITGVPSENY  258 (320)
T ss_dssp             ------CSEEEECCCCTTC
T ss_pred             ------CCEEEECCCCCcc
Confidence                  5999999986543

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.50  E-value=0.046  Score=46.43  Aligned_cols=119  Identities=11%  Similarity=0.135  Sum_probs=71.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++.|+|+ |.+|..++..|+..+.  +|++.|+++++++.....+....+ ...+.+. .|  +.+           .+
T Consensus         6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~-~~--~~~-----------a~   70 (318)
T 1ez4_A            6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY-SG--EYS-----------DC   70 (318)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE-EC--CGG-----------GG
T ss_pred             CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEE-EC--CHH-----------Hh
Confidence            57999998 9999999999999885  799999988777765555544311 1122222 22  211           12


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      ...|++|..+|....+- .+-   .+.+..|+.    +++...+.+.+.    ...+.+|++|......
T Consensus        71 ~~aDvVii~ag~~~~~g-~~R---~dl~~~n~~----i~~~i~~~i~~~----~p~a~iiv~tNPv~~~  127 (318)
T 1ez4_A           71 KDADLVVITAGAPQKPG-ESR---LDLVNKNLN----ILSSIVKPVVDS----GFDGIFLVAANPVDIL  127 (318)
T ss_dssp             TTCSEEEECCCC--------------CHHHHHH----HHHHHHHHHHHT----TCCSEEEECSSSHHHH
T ss_pred             CCCCEEEECCCCCCCCC-CCH---HHHHHHHHH----HHHHHHHHHHHh----CCCeEEEEeCCcHHHH
Confidence            36899999999764332 111   122333333    445555555543    3467899988877554

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=96.50  E-value=0.0042  Score=52.56  Aligned_cols=68  Identities=6%  Similarity=0.038  Sum_probs=46.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++||+|+ |++|...++-+...|++|+.++ +.++.+.+ +++     +.. ..+  |  |.   +    ++   .+
T Consensus       142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~-~~l-----Ga~-~v~--~--d~---~----~v---~~  198 (315)
T 3goh_A          142 KQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALA-AKR-----GVR-HLY--R--EP---S----QV---TQ  198 (315)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHH-HHH-----TEE-EEE--S--SG---G----GC---CS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHH-HHc-----CCC-EEE--c--CH---H----Hh---CC
Confidence            5889999999 9999998888888999999999 77665443 333     322 222  3  21   1    11   45


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|+++.++|.
T Consensus       199 g~Dvv~d~~g~  209 (315)
T 3goh_A          199 KYFAIFDAVNS  209 (315)
T ss_dssp             CEEEEECC---
T ss_pred             CccEEEECCCc
Confidence            79999999984

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=96.48  E-value=0.0047  Score=57.32  Aligned_cols=83  Identities=22%  Similarity=0.319  Sum_probs=61.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc-------------------chHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM-------------------AAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++.+|+|.|+ ||+|..+++.|+..|. ++.+++.+.                   .+...+.+.+++..|+.++..+.
T Consensus        15 L~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~   93 (640)
T 1y8q_B           15 VAGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYH   93 (640)
T ss_dssp             HHHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEE
T ss_pred             HhcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEe
Confidence            45678999987 8999999999999997 798988642                   35566777788877788888888


Q ss_pred             eCCCCHHHHHHHHHHHhcCCCCeeEEEEccC
Q 025275           87 LDVSSLASVRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        87 ~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      .+++.......++.       .+|+||.+..
T Consensus        94 ~~i~~~~~~~~~~~-------~~DlVvda~D  117 (640)
T 1y8q_B           94 DSIMNPDYNVEFFR-------QFILVMNALD  117 (640)
T ss_dssp             SCTTSTTSCHHHHT-------TCSEEEECCS
T ss_pred             cccchhhhhHhhhc-------CCCEEEECCC
Confidence            88865321122332       5788887753

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.48  E-value=0.0066  Score=52.20  Aligned_cols=79  Identities=14%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.++||+|+ |++|...++-+...|+ +|++++++.++++ ..+++     +.. ..  +|.++.+..+. +.+... .
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~-~~~~l-----Ga~-~v--i~~~~~~~~~~-v~~~t~-g  233 (352)
T 3fpc_A          166 LGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCD-IALEY-----GAT-DI--INYKNGDIVEQ-ILKATD-G  233 (352)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHH-HHHHH-----TCC-EE--ECGGGSCHHHH-HHHHTT-T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHH-HHHHh-----CCc-eE--EcCCCcCHHHH-HHHHcC-C
Confidence            5789999985 9999998888888999 7999988876543 33333     322 22  24444332332 222221 1


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      .++|++|.++|.
T Consensus       234 ~g~D~v~d~~g~  245 (352)
T 3fpc_A          234 KGVDKVVIAGGD  245 (352)
T ss_dssp             CCEEEEEECSSC
T ss_pred             CCCCEEEECCCC
Confidence            269999999984

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.46  E-value=0.0094  Score=51.05  Aligned_cols=78  Identities=19%  Similarity=0.262  Sum_probs=49.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.+++|+|+ |++|...++-+... |++|++++++.++++.+ +++     +... .+  |-.+ +..+. +.++.. .
T Consensus       171 ~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~-~~l-----Ga~~-~i--~~~~-~~~~~-v~~~t~-g  237 (345)
T 3jv7_A          171 PGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALA-REV-----GADA-AV--KSGA-GAADA-IRELTG-G  237 (345)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHH-HHT-----TCSE-EE--ECST-THHHH-HHHHHG-G
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHc-----CCCE-EE--cCCC-cHHHH-HHHHhC-C
Confidence            5789999998 99998877766666 67899999987765433 222     3222 22  2222 22222 222221 1


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      .++|++|.++|.
T Consensus       238 ~g~d~v~d~~G~  249 (345)
T 3jv7_A          238 QGATAVFDFVGA  249 (345)
T ss_dssp             GCEEEEEESSCC
T ss_pred             CCCeEEEECCCC
Confidence            269999999984

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.46  E-value=0.0077  Score=52.66  Aligned_cols=43  Identities=16%  Similarity=0.108  Sum_probs=37.8

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV   69 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~   69 (255)
                      .+.+++++|+|+ |.+|+.+++.+...|++|++.+++.++++..
T Consensus       169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          169 TVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQV  211 (384)
T ss_dssp             EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468899999996 8999999999999999999999998775544

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.44  E-value=0.057  Score=46.05  Aligned_cols=117  Identities=15%  Similarity=0.176  Sum_probs=68.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhh----CCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKE----IPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++.|.|+ |.+|.++|..|+..|. +|++.+++++.++.....+...    ....++...    +|.+    .+     
T Consensus        15 ~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t----~d~~----al-----   80 (328)
T 2hjr_A           15 KKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE----NNYE----YL-----   80 (328)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE----SCGG----GG-----
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC----CCHH----HH-----
Confidence            57889998 9999999999999998 9999999988776533333221    111222221    2211    12     


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                        ...|++|.++|.+..+-....+    .+..|+    -+.+...+.+.+.    ...+.+|++|.....
T Consensus        81 --~~aD~VI~avg~p~k~g~tr~d----l~~~n~----~i~~~i~~~i~~~----~p~a~viv~tNP~~~  136 (328)
T 2hjr_A           81 --QNSDVVIITAGVPRKPNMTRSD----LLTVNA----KIVGSVAENVGKY----CPNAFVICITNPLDA  136 (328)
T ss_dssp             --TTCSEEEECCSCCCCTTCCSGG----GHHHHH----HHHHHHHHHHHHH----CTTCEEEECCSSHHH
T ss_pred             --CCCCEEEEcCCCCCCCCCchhh----HHhhhH----HHHHHHHHHHHHH----CCCeEEEEecCchHH
Confidence              2579999999876433222222    122222    2344444444432    234567777766544

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.43  E-value=0.02  Score=47.97  Aligned_cols=85  Identities=19%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHH-------HHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA-------IVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +++.|.| .|.+|..+++.|++.|++|++.+|++++.+...+.       +.+...   ..++-.-+.+...++.+++++
T Consensus        16 ~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~---aDvvi~~vp~~~~~~~v~~~l   91 (296)
T 3qha_A           16 LKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA---ADLIHITVLDDAQVREVVGEL   91 (296)
T ss_dssp             CCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT---SSEEEECCSSHHHHHHHHHHH
T ss_pred             CeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh---CCEEEEECCChHHHHHHHHHH
Confidence            4566776 68999999999999999999999999877665432       111111   344555667777788888888


Q ss_pred             hcCCCCeeEEEEccCC
Q 025275          103 NSQGRPLNILINNAGI  118 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~  118 (255)
                      ......-.++|++...
T Consensus        92 ~~~l~~g~ivv~~st~  107 (296)
T 3qha_A           92 AGHAKPGTVIAIHSTI  107 (296)
T ss_dssp             HTTCCTTCEEEECSCC
T ss_pred             HHhcCCCCEEEEeCCC
Confidence            7655444677777653

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=96.43  E-value=0.01  Score=49.96  Aligned_cols=119  Identities=11%  Similarity=0.069  Sum_probs=71.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++.|+|+ |+||..+|..|+.++.  ++++.|.+++..+-....+....+  +........  .|++.           .
T Consensus         2 KV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~--~d~~~-----------~   67 (294)
T 2x0j_A            2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYSL-----------L   67 (294)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEE--SCGGG-----------G
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecC--CCHHH-----------h
Confidence            4778895 9999999999999884  799999987655443333432110  112222222  12221           2


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      ..-|++|..||.+..+- ++-+   +.++.|..    +++...+.+.+.    ...+.++.+|...-..
T Consensus        68 ~~aDvVvitAG~prkpG-mtR~---dLl~~Na~----I~~~i~~~i~~~----~p~aivlvvsNPvd~~  124 (294)
T 2x0j_A           68 KGSEIIVVTAGLARKPG-MTRL---DLAHKNAG----IIKDIAKKIVEN----APESKILVVTNPMDVM  124 (294)
T ss_dssp             TTCSEEEECCCCCCCSS-SCHH---HHHHHHHH----HHHHHHHHHHTT----STTCEEEECSSSHHHH
T ss_pred             CCCCEEEEecCCCCCCC-CchH---HHHHHHHH----HHHHHHHHHHhc----CCceEEEEecCcchhh
Confidence            25799999999876543 3332   34555655    444555555542    2356788888765433

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.40  E-value=0.0057  Score=54.04  Aligned_cols=57  Identities=18%  Similarity=0.268  Sum_probs=41.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASV   95 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si   95 (255)
                      ..++|.|. |-+|..+++.|.+.|..|++++++++..+...+    .    .+.++..|.++++.+
T Consensus         5 ~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~----g~~vi~GDat~~~~L   61 (413)
T 3l9w_A            5 MRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----F----GMKVFYGDATRMDLL   61 (413)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----T----TCCCEESCTTCHHHH
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----C----CCeEEEcCCCCHHHH
Confidence            45888887 789999999999999999999999876554432    1    233455566665543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.39  E-value=0.0096  Score=52.12  Aligned_cols=79  Identities=19%  Similarity=0.232  Sum_probs=51.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.++||.|+ |++|...++-+...|+ +|++++++.++++.+    ++.  +.  ..  +|..+.+.+.+.+.++.. .
T Consensus       185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a----~~l--Ga--~~--i~~~~~~~~~~~~~~~~~-g  252 (398)
T 2dph_A          185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLL----SDA--GF--ET--IDLRNSAPLRDQIDQILG-K  252 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH----HTT--TC--EE--EETTSSSCHHHHHHHHHS-S
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH----HHc--CC--cE--EcCCCcchHHHHHHHHhC-C
Confidence            5789999996 9999988888777899 899999987664332    222  33  23  355443221222333221 1


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      .++|++|.++|.
T Consensus       253 ~g~Dvvid~~g~  264 (398)
T 2dph_A          253 PEVDCGVDAVGF  264 (398)
T ss_dssp             SCEEEEEECSCT
T ss_pred             CCCCEEEECCCC
Confidence            269999999985

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.38  E-value=0.098  Score=44.45  Aligned_cols=122  Identities=15%  Similarity=0.152  Sum_probs=69.4

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhh----CCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKE----IPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++.|+|+ |.+|..++..|+..|. +|++.++++++++.....+...    ....++...    +|.+    .+     
T Consensus         5 ~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t----~d~~----al-----   70 (322)
T 1t2d_A            5 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS----NTYD----DL-----   70 (322)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE----CCGG----GG-----
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC----CCHH----Hh-----
Confidence            46889998 9999999999999998 8999999988776544444331    111122221    2211    12     


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          105 QGRPLNILINNAGIMASPFMLSKD-NIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~-~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                        ...|++|.++|.+..+.....+ .-.+.+..|+.    +.+...+.+.+.    ...+.+|++|...+..
T Consensus        71 --~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~----i~~~i~~~i~~~----~p~a~iiv~tNP~~~~  132 (322)
T 1t2d_A           71 --AGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNK----IMIEIGGHIKKN----CPNAFIIVVTNPVDVM  132 (322)
T ss_dssp             --TTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHH----HHHHHHHHHHHH----CTTSEEEECSSSHHHH
T ss_pred             --CCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHH----HHHHHHHHHHHH----CCCeEEEEecCChHHH
Confidence              2589999999976433221000 00111222222    344444444432    2356777777765543

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.38  E-value=0.0036  Score=53.31  Aligned_cols=39  Identities=31%  Similarity=0.500  Sum_probs=34.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV   69 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~   69 (255)
                      ++||+||+|++|...++.+...|++|++++++.++++..
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~  191 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL  191 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            799999999999999999988999999999998775443

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.37  E-value=0.011  Score=51.39  Aligned_cols=75  Identities=9%  Similarity=0.094  Sum_probs=55.0

Q ss_pred             cccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           21 VTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        21 ~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      ++..+.+.+++++|.|+ |.+|+.+++.+.+.|++|++++.+......      ..  .  -.++..|..|.+.+.++++
T Consensus         4 ~~~~~~~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~------~~--a--d~~~~~~~~d~~~l~~~~~   72 (377)
T 3orq_A            4 MNFNKLKFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCR------YV--A--HEFIQAKYDDEKALNQLGQ   72 (377)
T ss_dssp             SSCCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTG------GG--S--SEEEECCTTCHHHHHHHHH
T ss_pred             cccccCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhh------hh--C--CEEEECCCCCHHHHHHHHH
Confidence            34455567899999986 568999999999999999999876543110      00  1  1466689999998888876


Q ss_pred             HHhcCCCCeeEEE
Q 025275          101 EYNSQGRPLNILI  113 (255)
Q Consensus       101 ~~~~~~g~id~lv  113 (255)
                      +       +|+++
T Consensus        73 ~-------~dvi~   78 (377)
T 3orq_A           73 K-------CDVIT   78 (377)
T ss_dssp             H-------CSEEE
T ss_pred             h-------CCcce
Confidence            4       57664

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.36  E-value=0.0068  Score=50.30  Aligned_cols=37  Identities=16%  Similarity=0.092  Sum_probs=34.4

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      ++||.++|.|+++-+|+.+|+.|.+.|++|.++.+..
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t  184 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT  184 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            8999999999999999999999999999999987643

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.34  E-value=0.0065  Score=50.68  Aligned_cols=41  Identities=37%  Similarity=0.426  Sum_probs=36.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      ..+++||.++|.|.++-+|+.+|..|+..|++|.++.+...
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~  196 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTR  196 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCc
Confidence            46789999999999999999999999999999999876543

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=96.34  E-value=0.0055  Score=52.84  Aligned_cols=63  Identities=22%  Similarity=0.260  Sum_probs=50.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++.+|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+++..|..++..+.
T Consensus        34 L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~  112 (346)
T 1y8q_A           34 LRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT  112 (346)
T ss_dssp             HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC
T ss_pred             HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEe
Confidence            56789999986 6999999999999997 68888642                   346778888888887777777776


Q ss_pred             eCCC
Q 025275           87 LDVS   90 (255)
Q Consensus        87 ~Dl~   90 (255)
                      .+++
T Consensus       113 ~~~~  116 (346)
T 1y8q_A          113 EDIE  116 (346)
T ss_dssp             SCGG
T ss_pred             cccC
Confidence            6654

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.34  E-value=0.029  Score=47.48  Aligned_cols=118  Identities=15%  Similarity=0.151  Sum_probs=66.5

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhh----CCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKE----IPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++.|+|+ |.+|..++..|+..|. +|++.++++++++.....+...    ....++...    +|.+    .+     
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t----~d~~----a~-----   68 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT----NNYA----DT-----   68 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE----SCGG----GG-----
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC----CCHH----HH-----
Confidence            57999998 9999999999999996 8999999988776544444331    111122221    2211    12     


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                        ...|++|.++|.+..+-. +-+   +.+..|+    -+.+...+.+.+.    ...+.++++|......
T Consensus        69 --~~aD~Vi~a~g~p~~~g~-~r~---dl~~~n~----~i~~~i~~~i~~~----~p~a~vi~~tNPv~~~  125 (309)
T 1ur5_A           69 --ANSDVIVVTSGAPRKPGM-SRE---DLIKVNA----DITRACISQAAPL----SPNAVIIMVNNPLDAM  125 (309)
T ss_dssp             --TTCSEEEECCCC---------C---HHHHHHH----HHHHHHHHHHGGG----CTTCEEEECCSSHHHH
T ss_pred             --CCCCEEEEcCCCCCCCCC-CHH---HHHHHHH----HHHHHHHHHHHhh----CCCeEEEEcCCchHHH
Confidence              258999999997543221 111   1222233    2344444444432    2345666776665443

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.33  E-value=0.028  Score=47.71  Aligned_cols=117  Identities=13%  Similarity=0.192  Sum_probs=67.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++.|.|+ |.+|.+++..|++.|.  +|++.+++++.++.....+....+ .....+. .  ++.+    .+       .
T Consensus         2 kI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~-~--~d~~----~~-------~   66 (319)
T 1a5z_A            2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY-A--GDYA----DL-------K   66 (319)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE-E--CCGG----GG-------T
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEE-e--CCHH----Hh-------C
Confidence            5789998 9999999999999998  999999998776665544432111 0011111 1  2322    12       2


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      ..|++|.+++....+. .+.   .+.+..|+.-.    +.+.+.+.+.    ...+.+|++|...+.
T Consensus        67 ~aDvViiav~~~~~~g-~~r---~dl~~~n~~i~----~~i~~~i~~~----~~~~~ii~~tNp~~~  121 (319)
T 1a5z_A           67 GSDVVIVAAGVPQKPG-ETR---LQLLGRNARVM----KEIARNVSKY----APDSIVIVVTNPVDV  121 (319)
T ss_dssp             TCSEEEECCCCCCCSS-CCH---HHHHHHHHHHH----HHHHHHHHHH----CTTCEEEECSSSHHH
T ss_pred             CCCEEEEccCCCCCCC-CCH---HHHHHHHHHHH----HHHHHHHHhh----CCCeEEEEeCCcHHH
Confidence            5799999998654321 111   12333344333    3333444331    124577777766554

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.32  E-value=0.018  Score=48.64  Aligned_cols=117  Identities=18%  Similarity=0.124  Sum_probs=63.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++.|+|+ |.+|..++..|+..|.  +|++.++++++++.....+....+ .....+. .  ++.+    .       +.
T Consensus         2 kI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~-~--~~~~----a-------~~   66 (304)
T 2v6b_A            2 KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVW-H--GGHS----E-------LA   66 (304)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEE-E--ECGG----G-------GT
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEE-E--CCHH----H-------hC
Confidence            6889998 9999999999999998  899999997766544433322111 0111111 1  1211    1       23


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      ..|++|.+++.+..+- .+   -.+.+..|+.-...+++.+.++        ...+.+|++|.....
T Consensus        67 ~aDvVIi~~~~~~~~g-~~---r~dl~~~n~~i~~~i~~~i~~~--------~p~~~vi~~tNP~~~  121 (304)
T 2v6b_A           67 DAQVVILTAGANQKPG-ES---RLDLLEKNADIFRELVPQITRA--------APDAVLLVTSNPVDL  121 (304)
T ss_dssp             TCSEEEECC----------------CHHHHHHHHHHHHHHHHHH--------CSSSEEEECSSSHHH
T ss_pred             CCCEEEEcCCCCCCCC-Cc---HHHHHHhHHHHHHHHHHHHHHh--------CCCeEEEEecCchHH
Confidence            5899999998654321 11   1123344444333344433333        235577777766544

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.31  E-value=0.1  Score=44.07  Aligned_cols=119  Identities=17%  Similarity=0.237  Sum_probs=71.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhC--CCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEI--PSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++.|+|+ |.+|..++..|+..|. +|++.++++++++.....+....  ......+...  +|.+    .+       .
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~~----a~-------~   66 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS--NSYE----DM-------R   66 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE--SCGG----GG-------T
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC--CCHH----Hh-------C
Confidence            3778998 9999999999999887 69999999887765455443310  0112222221  2221    12       2


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccc
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRF  175 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~  175 (255)
                      ..|++|..+|....+- .+-+   +.+..|+    -+.+...+.+.+.    ...+.+|++|......
T Consensus        67 ~aD~Vi~~ag~~~k~G-~~r~---dl~~~n~----~i~~~i~~~i~~~----~p~a~iiv~tNPv~~~  122 (308)
T 2d4a_B           67 GSDIVLVTAGIGRKPG-MTRE---QLLEANA----NTMADLAEKIKAY----AKDAIVVITTNPVDAM  122 (308)
T ss_dssp             TCSEEEECCSCCCCSS-CCTH---HHHHHHH----HHHHHHHHHHHHH----CTTCEEEECCSSHHHH
T ss_pred             CCCEEEEeCCCCCCCC-CcHH---HHHHHHH----HHHHHHHHHHHHH----CCCeEEEEeCCchHHH
Confidence            6899999999865442 2222   2233333    3444555555442    2457888888876544

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.27  E-value=0.0079  Score=50.56  Aligned_cols=40  Identities=28%  Similarity=0.377  Sum_probs=36.6

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      ..+++||.++|.|.++-+|+.+|..|++.|++|.++.|..
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T  199 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT  199 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4678999999999999999999999999999999998754

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.27  E-value=0.071  Score=45.09  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=67.3

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhh----CCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKE----IPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++.|.|+ |.+|.+++..|++.|. +|++.+++++.++.....+...    ....++...    +|.+    .+     
T Consensus         5 ~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t----~d~~----a~-----   70 (317)
T 2ewd_A            5 RKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT----DDYA----DI-----   70 (317)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE----SCGG----GG-----
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC----CCHH----Hh-----
Confidence            57889998 9999999999999998 9999999988766532222211    001122211    1211    11     


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                        ...|++|.++|.+..+.. +-++   .+.-|    .-+.+.+.+.+.+.    .+.+.+|++|.....
T Consensus        71 --~~aDiVi~avg~p~~~g~-~r~d---~~~~~----~~i~~~i~~~i~~~----~~~~iii~~sNp~~~  126 (317)
T 2ewd_A           71 --SGSDVVIITASIPGRPKD-DRSE---LLFGN----ARILDSVAEGVKKY----CPNAFVICITNPLDV  126 (317)
T ss_dssp             --TTCSEEEECCCCSSCCSS-CGGG---GHHHH----HHHHHHHHHHHHHH----CTTSEEEECCSSHHH
T ss_pred             --CCCCEEEEeCCCCCCCCC-cHHH---HHHhh----HHHHHHHHHHHHHH----CCCcEEEEeCChHHH
Confidence              258999999997654432 2221   11112    22334444444432    124567777776544

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.26  E-value=0.0066  Score=54.41  Aligned_cols=74  Identities=11%  Similarity=0.197  Sum_probs=56.3

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ++++|.|+ |-+|..+|++|.+.|.+|++++++++.++.+.+++       .+..+..|.++++.++++--      ...
T Consensus         4 M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~Agi------~~a   69 (461)
T 4g65_A            4 MKIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEAGA------QDA   69 (461)
T ss_dssp             EEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHHTT------TTC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhcCC------CcC
Confidence            45777777 68999999999999999999999987765554432       46788899999886665521      257


Q ss_pred             eEEEEccC
Q 025275          110 NILINNAG  117 (255)
Q Consensus       110 d~lv~~ag  117 (255)
                      |++|-+.+
T Consensus        70 d~~ia~t~   77 (461)
T 4g65_A           70 DMLVAVTN   77 (461)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEEcC
Confidence            88886654

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=96.25  E-value=0.06  Score=45.48  Aligned_cols=116  Identities=19%  Similarity=0.140  Sum_probs=69.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHc--CCeEEEEEeccchHHHHHHHHHhh----CCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           31 TAIVTGASSGIGTETARVLALR--GVHVIMAVRNMAAGKDVREAIVKE----IPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~--G~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++.|.|+ |.+|..++..|++.  |.+|++.+++++.++.....+...    ....++...    +|.+   .       
T Consensus         2 kI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t----~d~~---~-------   66 (310)
T 1guz_A            2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS----NDYA---D-------   66 (310)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE----SCGG---G-------
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC----CCHH---H-------
Confidence            5788998 99999999999985  679999999988776544333221    011111111    2221   1       


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                       ....|++|.+++.+..+. .+   -.+.+..|+.-...+++.+.++.        ..+.+|+++...+.
T Consensus        67 -l~~aDvViiav~~p~~~g-~~---r~dl~~~n~~i~~~i~~~i~~~~--------~~~~viv~tNP~~~  123 (310)
T 1guz_A           67 -TANSDIVIITAGLPRKPG-MT---REDLLMKNAGIVKEVTDNIMKHS--------KNPIIIVVSNPLDI  123 (310)
T ss_dssp             -GTTCSEEEECCSCCCCTT-CC---HHHHHHHHHHHHHHHHHHHHHHC--------SSCEEEECCSSHHH
T ss_pred             -HCCCCEEEEeCCCCCCCC-CC---HHHHHHHHHHHHHHHHHHHHHhC--------CCcEEEEEcCchHH
Confidence             235899999998643221 11   22345555555555555554442        35688888776654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=96.24  E-value=0.018  Score=48.35  Aligned_cols=80  Identities=14%  Similarity=0.087  Sum_probs=51.9

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      .+++.|.||.|.+|.++++.|.+.|++|++.+|+.+.-  ..+.+    ...++.++-+-..   .+..+++++......
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~~--~~~~~----~~aDvVilavp~~---~~~~vl~~l~~~l~~   91 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV--AESIL----ANADVVIVSVPIN---LTLETIERLKPYLTE   91 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG--HHHHH----TTCSEEEECSCGG---GHHHHHHHHGGGCCT
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcccC--HHHHh----cCCCEEEEeCCHH---HHHHHHHHHHhhcCC
Confidence            35789999999999999999999999999999887531  11111    1334555544332   366677776554332


Q ss_pred             eeEEEEccC
Q 025275          109 LNILINNAG  117 (255)
Q Consensus       109 id~lv~~ag  117 (255)
                      =.+++.+++
T Consensus        92 ~~iv~~~~s  100 (298)
T 2pv7_A           92 NMLLADLTS  100 (298)
T ss_dssp             TSEEEECCS
T ss_pred             CcEEEECCC
Confidence            235555554

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.22  E-value=0.007  Score=50.49  Aligned_cols=39  Identities=31%  Similarity=0.386  Sum_probs=35.6

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN   62 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~   62 (255)
                      ..+++||.++|.|.++-+|+.++..|.+.|++|.++.+.
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  194 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF  194 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            457899999999999999999999999999999888654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.16  E-value=0.0086  Score=50.42  Aligned_cols=42  Identities=26%  Similarity=0.247  Sum_probs=37.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAG   66 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~   66 (255)
                      ..++.+++++|.|+ |.+|+++++.|...|++|++.+|+.++.
T Consensus       152 ~~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~  193 (300)
T 2rir_A          152 DYTIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHL  193 (300)
T ss_dssp             SSCSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred             CCCCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            45789999999996 8999999999999999999999987654

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*

Probab=96.16  E-value=0.049  Score=48.03  Aligned_cols=73  Identities=14%  Similarity=0.089  Sum_probs=54.1

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      .++++|+|+ |.+|+.+++.+.+.|++|++++.+......   .   .  ..  ..+..|..|.+.+.+++++.     .
T Consensus        19 ~~~ili~g~-g~~g~~~~~a~~~~G~~v~~v~~~~~~~~~---~---~--ad--~~~~~~~~d~~~l~~~~~~~-----~   82 (433)
T 2dwc_A           19 AQKILLLGS-GELGKEIAIEAQRLGVEVVAVDRYANAPAM---Q---V--AH--RSYVGNMMDKDFLWSVVERE-----K   82 (433)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCEEEEEESSTTCHHH---H---H--SS--EEEESCTTCHHHHHHHHHHH-----C
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhh---h---h--cc--eEEECCCCCHHHHHHHHHHc-----C
Confidence            468999988 579999999999999999999887654211   1   1  11  34567888988887777653     6


Q ss_pred             eeEEEEccC
Q 025275          109 LNILINNAG  117 (255)
Q Consensus       109 id~lv~~ag  117 (255)
                      +|.++...+
T Consensus        83 ~d~V~~~~e   91 (433)
T 2dwc_A           83 PDAIIPEIE   91 (433)
T ss_dssp             CSEEEECSS
T ss_pred             CCEEEECcc
Confidence            899987654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.15  E-value=0.017  Score=45.83  Aligned_cols=79  Identities=14%  Similarity=0.234  Sum_probs=50.9

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ...++..+++.|.| .|.+|.++++.|++.|.+|++.+|+++           ...+.++.++-  +. ...+..+++++
T Consensus        13 ~~~~~~~~~I~iiG-~G~mG~~la~~l~~~g~~V~~~~~~~~-----------~~~~aD~vi~a--v~-~~~~~~v~~~l   77 (209)
T 2raf_A           13 ENLYFQGMEITIFG-KGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------ATTLGEIVIMA--VP-YPALAALAKQY   77 (209)
T ss_dssp             -------CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTTCC-----------CSSCCSEEEEC--SC-HHHHHHHHHHT
T ss_pred             cccccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHH-----------HhccCCEEEEc--CC-cHHHHHHHHHH
Confidence            44567788899999 799999999999999999999999876           11233444443  33 56677777776


Q ss_pred             hcCCCCeeEEEEccC
Q 025275          103 NSQGRPLNILINNAG  117 (255)
Q Consensus       103 ~~~~g~id~lv~~ag  117 (255)
                      ..... =.++++++.
T Consensus        78 ~~~~~-~~~vi~~~~   91 (209)
T 2raf_A           78 ATQLK-GKIVVDITN   91 (209)
T ss_dssp             HHHHT-TSEEEECCC
T ss_pred             HHhcC-CCEEEEECC
Confidence            54333 235666554

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.14  E-value=0.02  Score=47.70  Aligned_cols=41  Identities=15%  Similarity=0.174  Sum_probs=35.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVR   70 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~   70 (255)
                      +++.|.|++|.+|.++++.|++.|++|++.+|+.+..+...
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~   52 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQ   52 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence            57999999999999999999999999999999877655543

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.12  E-value=0.012  Score=49.13  Aligned_cols=43  Identities=33%  Similarity=0.384  Sum_probs=37.9

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA   65 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~   65 (255)
                      ...+++|+.++|.|++.-+|+.+|+.|++.|++|.++.+....
T Consensus       153 ~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~  195 (288)
T 1b0a_A          153 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKN  195 (288)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSC
T ss_pred             cCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchh
Confidence            3467899999999999999999999999999999999766543

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.12  E-value=0.0012  Score=58.21  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=33.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEE-EEEe
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVI-MAVR   61 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi-~~~r   61 (255)
                      ..+++|++++|+| .|.+|...++.|.+.|++|+ +.++
T Consensus       213 g~~l~gk~vaVqG-~GnVG~~~a~~L~~~GakVVavsD~  250 (419)
T 3aoe_E          213 GLDLRGARVVVQG-LGQVGAAVALHAERLGMRVVAVATS  250 (419)
T ss_dssp             TCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCccCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEEEcC
Confidence            4578999999998 78999999999999999988 6676

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.09  E-value=0.0033  Score=52.33  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=37.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV   69 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~   69 (255)
                      .++++++++|.|+ |++|+++++.|.+.|++|.+.+|+.++.++.
T Consensus       125 ~~~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l  168 (275)
T 2hk9_A          125 PEVKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKL  168 (275)
T ss_dssp             TTGGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHH
T ss_pred             CCcCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            4677899999996 7999999999999999999999987665443

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.09  E-value=0.014  Score=48.64  Aligned_cols=85  Identities=12%  Similarity=0.110  Sum_probs=54.9

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCC---eEEEEEeccchHHHHHHHH--------HhhCCCCceEEEEeCCCCHHHHHH
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGV---HVIMAVRNMAAGKDVREAI--------VKEIPSAKVDAMELDVSSLASVRK   97 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~---~Vi~~~r~~~~~~~~~~~~--------~~~~~~~~~~~~~~Dl~~~~si~~   97 (255)
                      .+++.|.|+ |.+|.++++.|++.|+   +|++.+|+.++++...++.        .+...+.++.++-+   .+..+..
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav---~p~~~~~   78 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAV---KPHQIKM   78 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECS---CGGGHHH
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEe---CHHHHHH
Confidence            356778877 8999999999999998   8999999998876665531        01111233444433   3455666


Q ss_pred             HHHHHhcC-CCCeeEEEEccC
Q 025275           98 FASEYNSQ-GRPLNILINNAG  117 (255)
Q Consensus        98 ~~~~~~~~-~g~id~lv~~ag  117 (255)
                      +++++... ...=.++|++++
T Consensus        79 vl~~l~~~~l~~~~iiiS~~a   99 (280)
T 3tri_A           79 VCEELKDILSETKILVISLAV   99 (280)
T ss_dssp             HHHHHHHHHHTTTCEEEECCT
T ss_pred             HHHHHHhhccCCCeEEEEecC
Confidence            77766543 222236777654

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.09  E-value=0.0082  Score=49.49  Aligned_cols=47  Identities=30%  Similarity=0.328  Sum_probs=39.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAI   73 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~   73 (255)
                      .++++ +++|.|+ |++|+++++.|.+.|++|.+++|+.++.++..+++
T Consensus       113 ~~l~~-~v~iiG~-G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~  159 (263)
T 2d5c_A          113 IPLKG-PALVLGA-GGAGRAVAFALREAGLEVWVWNRTPQRALALAEEF  159 (263)
T ss_dssp             CCCCS-CEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH
T ss_pred             CCCCC-eEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence            46788 8999997 77999999999999999999999987766655543

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.08  E-value=0.015  Score=51.80  Aligned_cols=81  Identities=19%  Similarity=0.218  Sum_probs=54.4

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+++++|.++|.|. |+.|.++|+.|+++|++|.+.+++........+.+.+.  +  +.+.. .-...+    .++  
T Consensus         3 ~~~~~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~--g--i~~~~-g~~~~~----~~~--   70 (451)
T 3lk7_A            3 TITTFENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEE--G--IKVVC-GSHPLE----LLD--   70 (451)
T ss_dssp             -CCTTTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHT--T--CEEEE-SCCCGG----GGG--
T ss_pred             chhhcCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhC--C--CEEEE-CCChHH----hhc--
Confidence            446678999999999 78999999999999999999998764323344555544  3  23332 111110    111  


Q ss_pred             hcCCCCeeEEEEccCCC
Q 025275          103 NSQGRPLNILINNAGIM  119 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~  119 (255)
                          +.+|.||...|+.
T Consensus        71 ----~~~d~vv~spgi~   83 (451)
T 3lk7_A           71 ----EDFCYMIKNPGIP   83 (451)
T ss_dssp             ----SCEEEEEECTTSC
T ss_pred             ----CCCCEEEECCcCC
Confidence                1289999999875

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.06  E-value=0.018  Score=50.15  Aligned_cols=43  Identities=16%  Similarity=0.083  Sum_probs=37.9

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHH
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVR   70 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~   70 (255)
                      +.+++++|.|+ |.+|..+++.+...|++|++.+|+.++++...
T Consensus       182 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~  224 (381)
T 3p2y_A          182 VKPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVR  224 (381)
T ss_dssp             ECCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH
T ss_pred             cCCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            57789999999 79999999999999999999999988765543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.01  E-value=0.021  Score=48.54  Aligned_cols=88  Identities=15%  Similarity=0.104  Sum_probs=55.7

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHH-------HHhhCCCCceEEEEeCCCCHHHHHHHH
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA-------IVKEIPSAKVDAMELDVSSLASVRKFA   99 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~Dl~~~~si~~~~   99 (255)
                      .+.+++.|.|. |.+|..+++.|++.|++|++.+|++++.+...+.       +.+...+  ..++-.-+.+...++.++
T Consensus        29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~--aDvVi~~vp~~~~~~~v~  105 (320)
T 4dll_A           29 PYARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARD--ADIVVSMLENGAVVQDVL  105 (320)
T ss_dssp             CCCSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTT--CSEEEECCSSHHHHHHHH
T ss_pred             cCCCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhc--CCEEEEECCCHHHHHHHH
Confidence            34567777755 8999999999999999999999998776554332       1111112  233444556666676666


Q ss_pred             H--HHhcCCCCeeEEEEccC
Q 025275          100 S--EYNSQGRPLNILINNAG  117 (255)
Q Consensus       100 ~--~~~~~~g~id~lv~~ag  117 (255)
                      .  ++......-.++|++..
T Consensus       106 ~~~~~~~~l~~~~~vi~~st  125 (320)
T 4dll_A          106 FAQGVAAAMKPGSLFLDMAS  125 (320)
T ss_dssp             TTTCHHHHCCTTCEEEECSC
T ss_pred             cchhHHhhCCCCCEEEecCC
Confidence            5  44433333456666654

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=95.97  E-value=0.027  Score=46.24  Aligned_cols=88  Identities=14%  Similarity=0.235  Sum_probs=56.2

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCe-EEEEEeccchHHHHHHHHHhh-CC-----CCceEEEEeCCCCHHHHHHHHHH
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVH-VIMAVRNMAAGKDVREAIVKE-IP-----SAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~-Vi~~~r~~~~~~~~~~~~~~~-~~-----~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ++++.|.|+ |.+|..+++.|++.|++ |.+.+|+.++.+...+.+... ..     -.+..++-.-+. ...+..++++
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~-~~~~~~v~~~   87 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLK-DSAFAELLQG   87 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCC-HHHHHHHHHH
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecC-HHHHHHHHHH
Confidence            456888886 99999999999999998 889999987766655542100 00     011222222233 3456778887


Q ss_pred             HhcCCCCeeEEEEccCC
Q 025275          102 YNSQGRPLNILINNAGI  118 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~  118 (255)
                      +......=.+++++++.
T Consensus        88 l~~~~~~~~ivv~~s~~  104 (266)
T 3d1l_A           88 IVEGKREEALMVHTAGS  104 (266)
T ss_dssp             HHTTCCTTCEEEECCTT
T ss_pred             HHhhcCCCcEEEECCCC
Confidence            76544333467777654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.95  E-value=0.012  Score=49.26  Aligned_cols=42  Identities=24%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAG   66 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~   66 (255)
                      ..++.|++++|.|+ |.||+++++.|...|++|++.+|+.++.
T Consensus       150 ~~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~  191 (293)
T 3d4o_A          150 DFTIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLL  191 (293)
T ss_dssp             SSCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred             CCCCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence            35788999999995 8999999999999999999999987653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.95  E-value=0.029  Score=49.27  Aligned_cols=42  Identities=21%  Similarity=0.105  Sum_probs=37.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV   69 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~   69 (255)
                      +.+.+++|.|+ |.+|..+++.+...|++|++.+++...++..
T Consensus       188 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~  229 (405)
T 4dio_A          188 VPAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQV  229 (405)
T ss_dssp             ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            56789999999 7999999999999999999999998775544

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.91  E-value=0.035  Score=45.40  Aligned_cols=77  Identities=13%  Similarity=0.148  Sum_probs=55.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           31 TAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++|.|++|.+|+.+++.+.+. +++|+......+.+++...    .  .  .. +.+|++.++.+...+..+.+.  ++
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~----~--~--~D-vvIDfT~p~a~~~~~~~a~~~--g~   70 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD----G--N--TE-VVIDFTHPDVVMGNLEFLIDN--GI   70 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH----T--T--CC-EEEECSCTTTHHHHHHHHHHT--TC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc----c--C--Cc-EEEEccChHHHHHHHHHHHHc--CC
Confidence            5899999999999999999876 8887765544444443321    1  1  12 556999999888888776654  68


Q ss_pred             eEEEEccCC
Q 025275          110 NILINNAGI  118 (255)
Q Consensus       110 d~lv~~ag~  118 (255)
                      ++|+-..|.
T Consensus        71 ~~VigTTG~   79 (245)
T 1p9l_A           71 HAVVGTTGF   79 (245)
T ss_dssp             EEEECCCCC
T ss_pred             CEEEcCCCC
Confidence            888877763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	255
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	7e-39
d1yo6a1	250	c.2.1.2 (A:1-250) Putative carbonyl reductase snif	2e-37
d2gdza1	254	c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog	1e-34
d1wmaa1	275	c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox	3e-34
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	6e-34
d1sbya1	254	c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase	2e-32
d1hxha_	253	c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge	2e-31
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	2e-31
d1ydea1	250	c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase	3e-31
d2ew8a1	247	c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas	2e-28
d2d1ya1	248	c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T	2e-28
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	3e-28
d1xu9a_	269	c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase	1e-27
d1h5qa_	260	c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga	3e-27
d1hdca_	254	c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr	1e-26
d1xq1a_	259	c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara	2e-26
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	2e-26
d1gz6a_	302	c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do	4e-26
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	7e-26
d2ae2a_	259	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	8e-26
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	1e-24
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	4e-24
d1pr9a_	244	c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie	8e-24
d1vl8a_	251	c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga	3e-23
d1bdba_	276	c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy	4e-23
d1zmta1	252	c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag	8e-23
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	9e-23
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	9e-23
d1oaaa_	259	c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus	1e-22
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	3e-22
d1fmca_	255	c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase	3e-22
d2bd0a1	240	c.2.1.2 (A:2-241) Bacterial sepiapterin reductase	4e-22
d2c07a1	251	c.2.1.2 (A:54-304) beta-keto acyl carrier protein	4e-22
d1jtva_	285	c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi	1e-21
d1x1ta1	260	c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge	2e-21
d1nffa_	244	c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob	3e-21
d1w6ua_	294	c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr	5e-21
d1ja9a_	259	c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc	7e-21
d1zema1	260	c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba	6e-20
d1geea_	261	c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat	7e-20
d2rhca1	257	c.2.1.2 (A:5-261) beta-keto acyl carrier protein r	2e-19
d1edoa_	244	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	2e-19
d2a4ka1	241	c.2.1.2 (A:2-242) beta-keto acyl carrier protein r	5e-19
d1q7ba_	243	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	6e-19
d1snya_	248	c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly	8e-19
d1g0oa_	272	c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase	1e-18
d2ag5a1	245	c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami	2e-18
d1uaya_	241	c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena	3e-18
d1gega_	255	c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl	5e-18
d1uzma1	237	c.2.1.2 (A:9-245) beta-keto acyl carrier protein r	6e-18
d1dhra_	236	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	1e-17
d1ae1a_	258	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	2e-17
d1k2wa_	256	c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s	3e-16
d2o23a1	248	c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr	8e-16
d1mxha_	266	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	1e-15
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	5e-15
d1ulua_	256	c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph	3e-14
d1qsga_	258	c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli	7e-14
d1o5ia_	234	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	4e-13
d1fjha_	257	c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase	2e-10
d1e7wa_	284	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	2e-09
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	2e-09
d2fr1a1	259	c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI	2e-07
d1d7oa_	297	c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B	4e-07
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	9e-07
d2pd4a1	274	c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte	9e-07
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	2e-06
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	2e-06
d2h7ma1	268	c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri	5e-06
d1luaa1	191	c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter	5e-06
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	6e-05
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	7e-05
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	9e-05
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	2e-04
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	2e-04
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	2e-04
d1uh5a_	329	c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite	3e-04
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	5e-04
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	0.001
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	0.001

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (337), Expect = 7e-39
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 18/211 (8%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+VTGAS GIG   AR L  +G+ V+   R +   +++            +     D+S
Sbjct: 12  LALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS 71

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLTHLL 148
           +   +    S   SQ   ++I INNAG+    +    S    +  F  N L   + T   
Sbjct: 72  NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREA 131

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
             +MK+   ++  +G I+N++S +                    +    Y  +K A    
Sbjct: 132 YQSMKE---RNVDDGHIININSMSGHRVL-------------PLSVTHFYSATKYAVTAL 175

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            + L + L+E   +I A  + PG + T    
Sbjct: 176 TEGLRQELREAQTHIRATCISPGVVETQFAF 206

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  129 bits (326), Expect = 2e-37
 Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 16/221 (7%)

Query: 31  TAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           + +VTGA+ GIG    + L       H+I   R++    +     +K I  ++V  + L 
Sbjct: 5   SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE-----LKSIKDSRVHVLPLT 59

Query: 89  VSSLASVRKFASEYNSQ--GRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFL 143
           V+   S+  F S+         L++LINNAG++    +    ++  I  Q   N     L
Sbjct: 60  VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVL 119

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
           LT  LL  +K     S   G  ++VS  A     S           SA     AY  SK 
Sbjct: 120 LTQKLLPLLKN--AASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKA 177

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGIL 244
           A  +  + LA  LK+D   +   +  PG + TNL   N  L
Sbjct: 178 AINMFGRTLAVDLKDDN--VLVVNFCPGWVQTNLGGKNAAL 216

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (308), Expect = 1e-34
 Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 25/215 (11%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
           ++G    A+VTGA+ GIG   A  L L+G  V +   N+ AG   + A+ ++    K   
Sbjct: 1   VNGK--VALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLF 58

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLL 144
           ++ DV+    +R    +       L+IL+NNAG+       ++ N E     N +     
Sbjct: 59  IQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN------NEKNWEKTLQINLVSVISG 112

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T+L LD M K  Q     G I+N+SS A     +          +  Y +          
Sbjct: 113 TYLGLDYMSK--QNGGEGGIIINMSSLAGLMPVA---------QQPVYCASKHGIVGFTR 161

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           +   A  L          +  N++ PG + T +  
Sbjct: 162 SAALAANLMNS------GVRLNAICPGFVNTAILE 190

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 3e-34
 Identities = 54/244 (22%), Positives = 87/244 (35%), Gaps = 40/244 (16%)

Query: 32  AIVTGASSGIGTETARVLA-LRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           A+VTG + GIG    R L  L    V++  R++  G+   + +  E         +LD+ 
Sbjct: 6   ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDID 63

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLTHLL 148
            L S+R        +   L++L+NNAGI    +         E+   TN  G   +   L
Sbjct: 64  DLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTEL 123

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG--------------------------IR 182
           L  +K        +GR+VNVSS     A                                
Sbjct: 124 LPLIKP-------QGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVED 176

Query: 183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGV--NITANSLHPGSIVTNLFRY 240
             K   +       AYG +K+   + ++  A+ L E      I  N+  PG + T++   
Sbjct: 177 TKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP 236

Query: 241 NGIL 244
               
Sbjct: 237 KATK 240

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 6e-34
 Identities = 52/215 (24%), Positives = 76/215 (35%), Gaps = 25/215 (11%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           TG   ++TGA  GIG  TA   A     +++   N    ++           AKV    +
Sbjct: 6   TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVV 63

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNA--GIMASPFMLSKDNIELQFATNHLGHFLLT 145
           D S+   +   A +  ++   ++IL+NNA     +  F      IE  F  N L HF  T
Sbjct: 64  DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTT 123

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L  M K     +  G IV V+S A   +                    AY  SK A 
Sbjct: 124 KAFLPAMTK-----NNHGHIVTVASAAGHVSVP---------------FLLAYCSSKFAA 163

Query: 206 ILHAKELAKHL-KEDGVNITANSLHPGSIVTNLFR 239
           +   K L   L       +    L P  + T   +
Sbjct: 164 VGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIK 198

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

 Score =  117 bits (293), Expect = 2e-32
 Identities = 55/216 (25%), Positives = 79/216 (36%), Gaps = 27/216 (12%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
           +D T    I   A  GIG +T+R L  R +   + +  +     + E      P   +  
Sbjct: 1   MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAIN-PKVNITF 59

Query: 85  MELDVS-SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFL 143
              DV+  +A  +K   +   Q + ++ILIN AGI+          IE   A N  G   
Sbjct: 60  HTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL------DDHQIERTIAINFTGLVN 113

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
            T  +LD   K  +K    G I N+ S     A                     Y  SK 
Sbjct: 114 TTTAILDFWDK--RKGGPGGIIANICSVTGFNAIH---------------QVPVYSASKA 156

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           A +     LAK     G  +TA S++PG   T L  
Sbjct: 157 AVVSFTNSLAKLAPITG--VTAYSINPGITRTPLVH 190

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score =  114 bits (287), Expect = 2e-31
 Identities = 51/214 (23%), Positives = 83/214 (38%), Gaps = 28/214 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTG +SG+G E  ++L   G  V  +  N AAG+ +   +       +   +  
Sbjct: 5   QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRH 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLT 145
           DVSS A      +    +   LN+L+NNAGI+          ++       N    F+  
Sbjct: 60  DVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGC 119

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              +  MK+T       G I+N++S +                      +  Y  SK A 
Sbjct: 120 QQGIAAMKETG------GSIINMASVSSWL---------------PIEQYAGYSASKAAV 158

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
               +  A   ++ G  I  NS+HP  I T + +
Sbjct: 159 SALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQ 192

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score =  114 bits (286), Expect = 2e-31
 Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 29/223 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE-IPSAKVDAME 86
               AI+TG+S+GIG  TA + A  G  V +  R+    ++ R+ I+   +    V+++ 
Sbjct: 4   AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 63

Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGIM------ASPFMLSKDNIELQFATNHLG 140
            DV++ A   +  S    +   L+IL+NNAG         +    S ++ +     N   
Sbjct: 64  ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRS 123

Query: 141 HFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ 200
              LT   +  +         +G IVN+SS A     +                F  Y  
Sbjct: 124 VIALTKKAVPHLSS------TKGEIVNISSIASGLHATPD--------------FPYYSI 163

Query: 201 SKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI 243
           +K A   + +  A  L + G  I  NS+ PG + T      G+
Sbjct: 164 AKAAIDQYTRNTAIDLIQHG--IRVNSISPGLVATGFGSAMGM 204

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 3e-31
 Identities = 53/223 (23%), Positives = 81/223 (36%), Gaps = 32/223 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   +VTG   GIG    R     G  V++  ++ + G     A+ +E+P A    +  
Sbjct: 5   AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGG----RALEQELPGAV--FILC 58

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNA---GIMASPFMLSKDNIELQFATNHLGHFLL 144
           DV+    V+   SE   +   L+ ++NNA        P   S          N LG + L
Sbjct: 59  DVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTL 118

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           T L L  ++K       +G ++N+SS                           Y  +K A
Sbjct: 119 TKLALPYLRK------SQGNVINISSLVGAI---------------GQAQAVPYVATKGA 157

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGD 247
                K LA      G  +  N + PG+I T L+     L  D
Sbjct: 158 VTAMTKALALDESPYG--VRVNCISPGNIWTPLWEELAALMPD 198

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 28/214 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
               A++TG ++GIG   A   A+ G  + +A    A      EA ++ +   +V  ++ 
Sbjct: 4   KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEA---EAAIRNLG-RRVLTVKC 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFM-LSKDNIELQFATNHLGHFLLT 145
           DVS    V  F  +  S     +IL+NNAGI    PF  L+ +  +  F  N    FL+ 
Sbjct: 60  DVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMA 119

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              +  MK+     +  GRI+N++S  +                     +  Y  +K AN
Sbjct: 120 KAFVPGMKR-----NGWGRIINLTSTTYWLKIEA---------------YTHYISTKAAN 159

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           I   + LA  L +DG  IT N++ P  + T    
Sbjct: 160 IGFTRALASDLGKDG--ITVNAIAPSLVRTATTE 191

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

 Score =  106 bits (266), Expect = 2e-28
 Identities = 55/222 (24%), Positives = 77/222 (34%), Gaps = 32/222 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   +VTG + GIG   A+  A  G  V +       GK+V EAI            ++
Sbjct: 4   AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR-PEGKEVAEAI-------GGAFFQV 55

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLT 145
           D+       +F  E       +++L+NNA I    S   +           N      L+
Sbjct: 56  DLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLS 115

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
            L    M+K        G IVNV+S    FA  E                 AY  SK   
Sbjct: 116 ALAAREMRK-----VGGGAIVNVASVQGLFAEQE---------------NAAYNASKGGL 155

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGD 247
           +   + LA  L      I  N++ PG+I T        L  D
Sbjct: 156 VNLTRSLALDLAPLR--IRVNAVAPGAIATEAVLEAIALSPD 195

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score =  105 bits (264), Expect = 3e-28
 Identities = 50/214 (23%), Positives = 78/214 (36%), Gaps = 24/214 (11%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  AI+TG + GIG   A      G  V++  R+   G+   +++       ++   + 
Sbjct: 5   DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---DQIQFFQH 61

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLT 145
           D S      K          P++ L+NNAGI  +  +   +        A N  G F  T
Sbjct: 62  DSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGT 121

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
            L +  M    +       I+N+SS                       S GAY  SK A 
Sbjct: 122 RLGIQRM----KNKGLGASIINMSSIEGFVGDP---------------SLGAYNASKGAV 162

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            + +K  A        ++  N++HPG I T L  
Sbjct: 163 RIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVD 196

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 1e-27
 Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 24/214 (11%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   IVTGAS GIG E A  LA  G HV++  R+    + V    + E+ +A    +  
Sbjct: 13  QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCL-ELGAASAHYIAG 71

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLT 145
            +  +    +F ++       L++LI N     S   F     ++      N L + +LT
Sbjct: 72  TMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLT 131

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L  +K+        G IV VSS A + AY                   AY  SK A 
Sbjct: 132 VAALPMLKQ------SNGSIVVVSSLAGKVAYP---------------MVAAYSASKFAL 170

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                 + K      VN++      G I T    
Sbjct: 171 DGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAM 204

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

 Score =  103 bits (258), Expect = 3e-27
 Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 13/215 (6%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
           I     T IVTG + GIG    R +A  G +V +  R+ A   +V E + KE    K  A
Sbjct: 5   ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-VKTKA 63

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLL 144
            + DVS+   V K   + ++   P++ LI NA    S    + +     FA  +  +   
Sbjct: 64  YQCDVSNTDIVTKTIQQIDADLGPISGLIANA--GVSVVKPATELTHEDFAFVYDVNVFG 121

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
                  + K   +  ++G IV  SS + +      +            +   Y  SK A
Sbjct: 122 VFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLN--------GSLTQVFYNSSKAA 173

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                K LA      G  I  N+L PG + T+   
Sbjct: 174 CSNLVKGLAAEWASAG--IRVNALSPGYVNTDQTA 206

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

 Score =  101 bits (254), Expect = 1e-26
 Identities = 54/222 (24%), Positives = 81/222 (36%), Gaps = 29/222 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +G T I+TG + G+G E AR     G  V++A      G      +             L
Sbjct: 4   SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHL 58

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLT 145
           DV+     ++  +    +   ++ L+NNAGI         S +        N  G F+  
Sbjct: 59  DVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGM 118

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             ++  MK      +  G IVN+SS A                        +YG SK   
Sbjct: 119 KTVIPAMKD-----AGGGSIVNISSAAGLM---------------GLALTSSYGASKWGV 158

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGD 247
              +K  A  L  D   I  NS+HPG   T +    GI +G+
Sbjct: 159 RGLSKLAAVELGTD--RIRVNSVHPGMTYTPMTAETGIRQGE 198

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  101 bits (252), Expect = 2e-26
 Identities = 54/221 (24%), Positives = 81/221 (36%), Gaps = 27/221 (12%)

Query: 22  TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAK 81
           +Q       T +VTG + GIG       A  G  +    RN     +      K+    +
Sbjct: 1   SQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQ 58

Query: 82  VDAMELDVSSLASVRKFASEYNSQ-GRPLNILINNAGIM-ASPFM-LSKDNIELQFATNH 138
           V     D S      K     +S  G  L+ILINN G + + P +  + ++     +TN 
Sbjct: 59  VTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNL 118

Query: 139 LGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAY 198
              + L+ L    +K +       G I+ +SS A   + S G                 Y
Sbjct: 119 ESAYHLSQLAHPLLKAS-----GCGNIIFMSSIAGVVSASVG---------------SIY 158

Query: 199 GQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             +K A    A+ LA     DG  I AN++ P  I T L  
Sbjct: 159 SATKGALNQLARNLACEWASDG--IRANAVAPAVIATPLAE 197

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (251), Expect = 2e-26
 Identities = 48/217 (22%), Positives = 90/217 (41%), Gaps = 33/217 (15%)

Query: 25  IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
           ++ +GL A+VTGA  GIG +T + L   G  V+   R  +       ++ KE P  +   
Sbjct: 1   LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDL----VSLAKECPGIE--P 54

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHF 142
           + +D+    +  K          P+++L+NNA +  M     ++K+  +  F+ N    F
Sbjct: 55  VCVDLGDWDATEKALGGIG----PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVF 110

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
            ++ ++     +        G IVNVSS      +                +   Y  +K
Sbjct: 111 QVSQMVA----RDMINRGVPGSIVNVSSMVAHVTFP---------------NLITYSSTK 151

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            A  +  K +A  L      I  NS++P  ++T++ +
Sbjct: 152 GAMTMLTKAMAMELGPHK--IRVNSVNPTVVLTDMGK 186

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (252), Expect = 4e-26
 Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 30/215 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN-----MAAGKDVREAIVKEIPSAKV 82
            G   +VTGA  G+G   A   A RG  V++         +  G    + +V+EI   + 
Sbjct: 6   DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIR-RRG 64

Query: 83  DAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLG 140
                +  S+ +  K           +++++NNAGI+   S   +S ++ ++    +  G
Sbjct: 65  GKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRG 124

Query: 141 HFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ 200
            F +T    D MKK        GRI+  +S +  +                      Y  
Sbjct: 125 SFQVTRAAWDHMKK-----QNYGRIIMTASASGIY---------------GNFGQANYSA 164

Query: 201 SKLANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
           +KL  +  A  L    +++   I  N++ P +   
Sbjct: 165 AKLGLLGLANTLVIEGRKNN--IHCNTIAPNAGSR 197

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  100 bits (249), Expect = 7e-26
 Identities = 46/223 (20%), Positives = 85/223 (38%), Gaps = 29/223 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE-IPSAKVDAME 86
           +  T I+TG+S+GIG  TA + A  G +V +  R+    ++ R+ I+K  +   +V+++ 
Sbjct: 4   SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 63

Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAG------IMASPFMLSKDNIELQFATNHLG 140
            DV++     +  +    Q   +++L+NNAG         +      D        N   
Sbjct: 64  ADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQA 123

Query: 141 HFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ 200
              +T  +   +  +     +   +   S  A   A                  F  Y  
Sbjct: 124 VIEMTKKVKPHLVAS-----KGEIVNVSSIVAGPQAQP---------------DFLYYAI 163

Query: 201 SKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI 243
           +K A   + +  A  L + G  I  NS+ PG + T      G+
Sbjct: 164 AKAALDQYTRSTAIDLAKFG--IRVNSVSPGMVETGFTNAMGM 204

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

 Score = 99.7 bits (248), Expect = 8e-26
 Identities = 55/215 (25%), Positives = 79/215 (36%), Gaps = 27/215 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G TA+VTG S GIG      LA  G  V    RN     D       +    KV+A   
Sbjct: 7   EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVC 64

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLL 144
           D+SS +  ++  +   +     LNIL+NNAGI+        + ++  L  + N    + L
Sbjct: 65  DLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHL 124

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           + L    +K     S R   +   S                     A      YG +K A
Sbjct: 125 SVLAHPFLK----ASERGNVVFISSVSGAL----------------AVPYEAVYGATKGA 164

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                + LA    +D   I  N + PG I T+L  
Sbjct: 165 MDQLTRCLAFEWAKDN--IRVNGVGPGVIATSLVE 197

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 97.0 bits (241), Expect = 1e-24
 Identities = 45/217 (20%), Positives = 88/217 (40%), Gaps = 27/217 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE-IPSAKVDAME 86
           +G + I+TG+S+GIG   A + A  G  V +  RN    ++ ++ I+K  +P+ K++A+ 
Sbjct: 3   SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 62

Query: 87  LDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML----SKDNIELQFATNHLGHF 142
            DV+  +      +   ++   ++IL+NNAG   +          +  +  F  N     
Sbjct: 63  ADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI 122

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
            +T    + + KT  +      IV                         ++ +  Y  +K
Sbjct: 123 EMTQKTKEHLIKTKGEIVNVSSIVAGPQA--------------------HSGYPYYACAK 162

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            A   + +  A  L + G  +  NS+ PG++ T    
Sbjct: 163 AALDQYTRCTAIDLIQHG--VRVNSVSPGAVATGFMG 197

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.9 bits (238), Expect = 4e-24
 Identities = 44/215 (20%), Positives = 74/215 (34%), Gaps = 28/215 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPS---AKVDA 84
            G  AIVTG ++GIG    + L   G +V++A R +   K   + +   +P    A+V  
Sbjct: 11  QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 70

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHF 142
           ++ ++ +   V             +N L+NN G   ++    +S         TN  G F
Sbjct: 71  IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF 130

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
            +   +  +  K        G IVN+                       +      G ++
Sbjct: 131 YMCKAVYSSWMK-----EHGGSIVNIIVPTKA----------------GFPLAVHSGAAR 169

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
                  K LA      G  I  N + PG I +  
Sbjct: 170 AGVYNLTKSLALEWACSG--IRINCVAPGVIYSQT 202

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (233), Expect = 8e-24
 Identities = 44/214 (20%), Positives = 87/214 (40%), Gaps = 33/214 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   +VTGA  GIG  T + L   G  V+   R  A      +++V+E P   ++ + +
Sbjct: 6   AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADL----DSLVRECP--GIEPVCV 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFM--LSKDNIELQFATNHLGHFLLT 145
           D+    +  +          P+++L+NNA +        ++K+  +  F  N      ++
Sbjct: 60  DLGDWEATERALGSVG----PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVS 115

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
            ++     +        G IVNVSS+  + A +               +   Y  +K A 
Sbjct: 116 QIVA----RGLIARGVPGAIVNVSSQCSQRAVT---------------NHSVYCSTKGAL 156

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +  K +A  L      I  N+++P  ++T++ +
Sbjct: 157 DMLTKVMALELGPHK--IRVNAVNPTVVMTSMGQ 188

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 92.8 bits (230), Expect = 3e-23
 Identities = 48/213 (22%), Positives = 75/213 (35%), Gaps = 22/213 (10%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTG S G+G   A+ LA  G  V++A RN+    +  + + ++    +  A   
Sbjct: 4   RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG-VETMAFRC 62

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFMLSKDNIELQFATNHLGHFLLTH 146
           DVS+   V+K       +   L+ ++N AGI    P     +   L      +   L   
Sbjct: 63  DVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPA----EEFPLDEFRQVIEVNLFGT 118

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
             +     +  + S    I+N+ S          I                Y  SK    
Sbjct: 119 YYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISA--------------YAASKGGVA 164

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
              K LAK     G  I  N + PG   T +  
Sbjct: 165 SLTKALAKEWGRYG--IRVNVIAPGWYRTKMTE 195

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

 Score = 92.8 bits (230), Expect = 4e-23
 Identities = 41/217 (18%), Positives = 70/217 (32%), Gaps = 36/217 (16%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   ++TG +SG+G          G  V +  ++     ++            V  +  
Sbjct: 4   KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH-----GDNVLGIVG 58

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI-------MASPFMLSKDNIELQFATNHLG 140
           DV SL   ++ AS   ++   ++ LI NAGI       +  P        +  F  N  G
Sbjct: 59  DVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKG 118

Query: 141 HFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQ 200
           +       L  +       SR   I  +S+                           Y  
Sbjct: 119 YIHAVKACLPALVA-----SRGNVIFTISNAGFY----------------PNGGGPLYTA 157

Query: 201 SKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL 237
           +K A +   +ELA  L      +  N +  G I ++L
Sbjct: 158 AKHAIVGLVRELAFEL---APYVRVNGVGSGGINSDL 191

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 91.6 bits (227), Expect = 8e-23
 Identities = 30/212 (14%), Positives = 56/212 (26%), Gaps = 33/212 (15%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           TAIVT      G  +A  L+  G  V           D       E+ +      +L   
Sbjct: 2   TAIVTNVKHFGGMGSALRLSEAGHTVACH--------DESFKQKDELEAFAETYPQLKPM 53

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIM--ASPFM-LSKDNIELQFATNHLGHFLLTHL 147
           S     +      S    +++L++N        P    + ++         +  F L + 
Sbjct: 54  SEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNA 113

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
           +   M                     +      I          +     Y  ++     
Sbjct: 114 VASQM--------------------KKRKSGHIIFITSATPFGPWKELSTYTSARAGACT 153

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            A  L+K L E    I   ++ P  + +    
Sbjct: 154 LANALSKELGEYN--IPVFAIGPNYLHSEDSP 183

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 91.2 bits (226), Expect = 9e-23
 Identities = 44/214 (20%), Positives = 77/214 (35%), Gaps = 32/214 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
                ++TGA+ GIG  T  + A  G  ++         ++  EA+           + +
Sbjct: 4   KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVM 56

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAG--IMASPFMLSKDNIELQFATNHLGHFLLT 145
           DV+  ASV +  +E  +    L+ +++ AG       + +  ++ EL    N  G FL+ 
Sbjct: 57  DVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVA 116

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
               + M++        G IV  +S  +                        Y  S    
Sbjct: 117 KAASEAMRE-----KNPGSIVLTASRVYL----------------GNLGQANYAASMAGV 155

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           +   + LA  L   G  I  N+L PG I T +  
Sbjct: 156 VGLTRTLALELGRWG--IRVNTLAPGFIETRMTA 187

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score = 91.7 bits (227), Expect = 9e-23
 Identities = 44/216 (20%), Positives = 74/216 (34%), Gaps = 28/216 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
               AI+TG + GIG  TA++    G  V++A      G+ V   I        +  +  
Sbjct: 5   QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP---DVISFVHC 61

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM----ASPFMLSKDNIELQFATNHLGHFL 143
           DV+    VR       ++   L+I+  N G++     S      ++ +     N  G FL
Sbjct: 62  DVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFL 121

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
           +               +++G IV  +S +   A                     Y  +K 
Sbjct: 122 VAKHAAR-----VMIPAKKGSIVFTASISSFTA--------------GEGVSHVYTATKH 162

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           A +     L   L E G  I  N + P  + + L  
Sbjct: 163 AVLGLTTSLCTELGEYG--IRVNCVSPYIVASPLLT 196

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.4 bits (226), Expect = 1e-22
 Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 34/224 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLA---LRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
                ++TGAS G G   A  LA     G  ++++ R+ +  + ++E +  + P  KV  
Sbjct: 5   GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVL 64

Query: 85  MELDVSSLASVRKFASEYNSQGRP----LNILINNAGIMASPFM-----LSKDNIELQFA 135
              D+ + A V++  S      RP      +LINNA  +               +   +A
Sbjct: 65  AAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWA 124

Query: 136 TNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSF 195
            N      LT   L+  + +         +VN+SS      Y                 +
Sbjct: 125 LNLTSMLCLTSGTLNAFQDSPG---LSKTVVNISSLCALQPYKG---------------W 166

Query: 196 GAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           G Y   K A  +  + LA        ++   S  PG +  ++ +
Sbjct: 167 GLYCAGKAARDMLYQVLAAEEP----SVRVLSYAPGPLDNDMQQ 206

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 90.2 bits (223), Expect = 3e-22
 Identities = 41/212 (19%), Positives = 72/212 (33%), Gaps = 19/212 (8%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           T    ++TG  SG+G  TA  LA  G  + +   +    +  + A+++  P A+V     
Sbjct: 3   TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVA 62

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHL 147
           DVS  A V  + +    +   ++   NNAGI         ++         +   L    
Sbjct: 63  DVSDEAQVEAYVTATTERFGRIDGFFNNAGIE--GKQNPTESFTAAEFDKVVSINLRGVF 120

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
           L         +    G +VN +S                       +   Y  +K   + 
Sbjct: 121 LGLEKVLKIMREQGSGMVVNTASVGGIRGIG---------------NQSGYAAAKHGVVG 165

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             +  A      G  I  N++ PG+I T +  
Sbjct: 166 LTRNSAVEYGRYG--IRINAIAPGAIWTPMVE 195

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 90.1 bits (223), Expect = 3e-22
 Identities = 49/213 (23%), Positives = 81/213 (38%), Gaps = 25/213 (11%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  AI+TGA +GIG E A   A  G  V+++  N  A   V + I +     +  A   
Sbjct: 10  DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRC 67

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM-ASPFMLSKDNIELQFATNHLGHFLLTH 146
           D++S   +   A    S+   ++IL+NNAG     PF +   +    +  N    F L+ 
Sbjct: 68  DITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQ 127

Query: 147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
           L+   M+K                          +  +  N      +      S L   
Sbjct: 128 LVAPEMEKNGG---------------GVILTITSMAAENKNINMTSYASSKAAASHLVRN 172

Query: 207 LHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           + A +L +       NI  N + PG+I+T+  +
Sbjct: 173 M-AFDLGEK------NIRVNGIAPGAILTDALK 198

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

 Score = 89.4 bits (221), Expect = 4e-22
 Identities = 44/217 (20%), Positives = 84/217 (38%), Gaps = 33/217 (15%)

Query: 32  AIVTGASSGIGTETARVLALRGVH-------VIMAVRNMAAGKDVREAIVKEIPSAKVDA 84
            ++TGA  GIG   A   A    H       ++++ R  A  + +      E   A  D 
Sbjct: 4   LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDT 61

Query: 85  MELDVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHF 142
           +  D+S +A VR+  +    +   ++ L+NNAG+    +   L++++ +    TN  G F
Sbjct: 62  ITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTF 121

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
            LT  L   M++        G I  ++S A   A+                    Y  SK
Sbjct: 122 FLTQALFALMER-----QHSGHIFFITSVAATKAFR---------------HSSIYCMSK 161

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                  + +  + ++    +    + PG++ T ++ 
Sbjct: 162 FGQRGLVETMRLYARKCN--VRITDVQPGAVYTPMWG 196

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 89.7 bits (222), Expect = 4e-22
 Identities = 55/211 (26%), Positives = 83/211 (39%), Gaps = 22/211 (10%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+VTGA  GIG E A++LA    HVI   R   +   V + I       +      DVS
Sbjct: 12  VALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVS 69

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLD 150
               + +  ++  ++ + ++IL+NNAGI      L   N E +     L   L +   + 
Sbjct: 70  KKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWED---VLRTNLNSLFYIT 126

Query: 151 TMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAK 210
                   ++R GRI+N+SS                           Y  SK   I   K
Sbjct: 127 QPISKRMINNRYGRIINISSIVGLTGNV---------------GQANYSSSKAGVIGFTK 171

Query: 211 ELAKHLKEDGVNITANSLHPGSIVTNLFRYN 241
            LAK L      IT N++ PG I +++    
Sbjct: 172 SLAKELASRN--ITVNAIAPGFISSDMTDKI 200

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (219), Expect = 1e-21
 Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 26/212 (12%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNM--AAGKDVREAIVKEI--PSAKVDAMEL 87
            ++TG SSGIG   A  LA            +     +       + +  P   ++ ++L
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHL 147
           DV    SV             + +     G++     L +D +      N +G   +   
Sbjct: 65  DVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQA 124

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
            L  MK+        GR++   S                           Y  SK A   
Sbjct: 125 FLPDMKR-----RGSGRVLVTGSVGGLMGLP---------------FNDVYCASKFALEG 164

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
             + LA  L   G  +  + +  G + T    
Sbjct: 165 LCESLAVLLLPFG--VHLSLIECGPVHTAFME 194

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

 Score = 87.9 bits (217), Expect = 2e-21
 Identities = 59/214 (27%), Positives = 84/214 (39%), Gaps = 24/214 (11%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTG++SGIG   A  LA +G  +++     AA  +   A +      KV     
Sbjct: 3   KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA 62

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLT 145
           D+S   +VR        Q   ++IL+NNAGI   A       +  +   A N    F  T
Sbjct: 63  DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGT 122

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L  MKK        GRI+N++S                    A  +  AY  +K   
Sbjct: 123 AAALPHMKK-----QGFGRIINIASAHGLV---------------ASANKSAYVAAKHGV 162

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           +   K  A      G  ITAN++ PG + T L  
Sbjct: 163 VGFTKVTALETAGQG--ITANAICPGWVRTPLVE 194

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 87.0 bits (215), Expect = 3e-21
 Identities = 48/214 (22%), Positives = 79/214 (36%), Gaps = 29/214 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           TG  A+V+G + G+G    R +   G  V+        GK +   +     +     + L
Sbjct: 5   TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHL 59

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML--SKDNIELQFATNHLGHFLLT 145
           DV+  A  +       +    L++L+NNAGI+    +   +    +     N  G FL  
Sbjct: 60  DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGI 119

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             ++  MK+     +  G I+N+SS                       +   Y  +K A 
Sbjct: 120 RAVVKPMKE-----AGRGSIINISSIEGLA---------------GTVACHGYTATKFAV 159

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
               K  A  L   G  I  NS+HPG + T +  
Sbjct: 160 RGLTKSTALELGPSG--IRVNSIHPGLVKTPMTD 191

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

 Score = 87.5 bits (216), Expect = 5e-21
 Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A +TG  +G+G     +L+  G   ++A R M   K   E I  +  + KV A++ 
Sbjct: 24  QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGN-KVHAIQC 82

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHL 147
           DV     V+   SE        NI+INNA    +    ++      + T        T  
Sbjct: 83  DVRDPDMVQNTVSELIKVAGHPNIVINNA--AGNFISPTERLSPNAWKTITDIVLNGTAF 140

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
           +   + K   K+ +    +++++                   +          +K     
Sbjct: 141 VTLEIGKQLIKAQKGAAFLSITTIYAE---------------TGSGFVVPSASAKAGVEA 185

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRGDF 248
            +K LA    + G  +  N + PG I T          G F
Sbjct: 186 MSKSLAAEWGKYG--MRFNVIQPGPIKTKGAFSRLDPTGTF 224

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 86.3 bits (213), Expect = 7e-21
 Identities = 48/218 (22%), Positives = 81/218 (37%), Gaps = 30/218 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
            G  A+ TGA  GIG   A  L  RG  V++   +        E +V E+     +  A+
Sbjct: 5   AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS---SSKAAEEVVAELKKLGAQGVAI 61

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFL 143
           + D+S  + V     +  S    L+ +++N+G+        ++++  +  F  N  G F 
Sbjct: 62  QADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFF 121

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
           +    L   ++        GRI+  SS A                         Y  SK 
Sbjct: 122 VAQQGLKHCRRG-------GRIILTSSIAAVMTGIPN--------------HALYAGSKA 160

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN 241
           A     +  A      G  +T N + PG + T++F  N
Sbjct: 161 AVEGFCRAFAVDCGAKG--VTVNCIAPGGVKTDMFDEN 196

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

 Score = 84.1 bits (207), Expect = 6e-20
 Identities = 49/215 (22%), Positives = 71/215 (33%), Gaps = 27/215 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   +VTGA   IG  TA  LA  G  + +   N  A +    ++ ++    +  +   
Sbjct: 4   NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVC 61

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNA---GIMASPFMLSKDNIELQFATNHLGHFLL 144
           DV+S  +V             ++ L NNA   G  A       D+       N  G F +
Sbjct: 62  DVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHV 121

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
              +   M          GRIVN +S A                        AYG SK A
Sbjct: 122 LKAVSRQMIT-----QNYGRIVNTASMAGVKGPPN---------------MAAYGTSKGA 161

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            I   +  A  L      I  N++ PG +      
Sbjct: 162 IIALTETAALDLAPYN--IRVNAISPGYMGPGFMW 194

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

 Score = 84.0 bits (207), Expect = 7e-20
 Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 28/216 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
            G   ++TG+S+G+G   A   A     V++  R+    +D   ++++EI     +  A+
Sbjct: 6   EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRS---KEDEANSVLEEIKKVGGEAIAV 62

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFL 143
           + DV+  + V         +   L+++INNAG+    S   +S  +      TN  G FL
Sbjct: 63  KGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFL 122

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
            +   +    K   ++  +G ++N+SS   +  +                 F  Y  SK 
Sbjct: 123 GSREAI----KYFVENDIKGTVINMSSVHEKIPWPL---------------FVHYAASKG 163

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
              L  + LA      G  I  N++ PG+I T +  
Sbjct: 164 GMKLMTETLALEYAPKG--IRVNNIGPGAINTPINA 197

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 82.5 bits (203), Expect = 2e-19
 Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 20/211 (9%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
              A+VTGA+SGIG E AR L   G+ V +  R     +   + + +     + D    D
Sbjct: 2   SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCD 59

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLL 148
           V S+  +    +    +  P+++L+NNAG        ++   EL           +  + 
Sbjct: 60  VRSVPEIEALVAAVVERYGPVDVLVNNAGRP-GGGATAELADELWLDVVETNLTGVFRVT 118

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
              +K         GRIVN++S   +                       Y  SK   +  
Sbjct: 119 KQVLKAGGMLERGTGRIVNIASTGGKQGVVH---------------AAPYSASKHGVVGF 163

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            K L   L   G  IT N++ PG + T +  
Sbjct: 164 TKALGLELARTG--ITVNAVCPGFVETPMAA 192

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

 Score = 82.1 bits (202), Expect = 2e-19
 Identities = 48/212 (22%), Positives = 75/212 (35%), Gaps = 29/212 (13%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAMELDV 89
            +VTGAS GIG   A  L   G  V++     A      E + K+I +   +      DV
Sbjct: 4   VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAA---EEVSKQIEAYGGQAITFGGDV 60

Query: 90  SSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATN--HLGHFLLTHL 147
           S  A V             +++++NNAGI     ++     +     +    G FL T  
Sbjct: 61  SKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQA 120

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
               M K      R+GRI+N++S                           Y  +K   I 
Sbjct: 121 ATKIMMK-----KRKGRIINIASVVGLIGNI---------------GQANYAAAKAGVIG 160

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +K  A+        I  N + PG I +++  
Sbjct: 161 FSKTAAREGASRN--INVNVVCPGFIASDMTA 190

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

 Score = 81.3 bits (200), Expect = 5e-19
 Identities = 48/214 (22%), Positives = 77/214 (35%), Gaps = 32/214 (14%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           +G T +VTGA+SGIG     + A  G  ++   R      +   A+      A+  A+  
Sbjct: 4   SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVA 58

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLT 145
           DVS   +V    +E   +   L+ + + AG+   A  + L  +  E     N  G FL+ 
Sbjct: 59  DVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVA 118

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
               + +++          +V   S A                         Y   KL  
Sbjct: 119 RKAGEVLEEGGS-------LVLTGSVAGLG----------------AFGLAHYAAGKLGV 155

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           +  A+ LA  L   G  +  N L PG I T +  
Sbjct: 156 VGLARTLALELARKG--VRVNVLLPGLIQTPMTA 187

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

 Score = 81.0 bits (199), Expect = 6e-19
 Identities = 56/214 (26%), Positives = 87/214 (40%), Gaps = 29/214 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G  A+VTGAS GIG   A  LA RG  VI    +    + + + +      A    + L
Sbjct: 3   EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL-----GANGKGLML 57

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQF--ATNHLGHFLLT 145
           +V+  AS+     +  ++   ++IL+NNAGI     ++   + E      TN    F L+
Sbjct: 58  NVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLS 117

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             ++  M K      R GRI+ + S                           Y  +K   
Sbjct: 118 KAVMRAMMK-----KRHGRIITIGSVVGTMGNG---------------GQANYAAAKAGL 157

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           I  +K LA+ +   G  IT N + PG I T++ R
Sbjct: 158 IGFSKSLAREVASRG--ITVNVVAPGFIETDMTR 189

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 80.9 bits (198), Expect = 8e-19
 Identities = 47/215 (21%), Positives = 78/215 (36%), Gaps = 15/215 (6%)

Query: 31  TAIVTGASSGIGTETARVL---ALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
           + ++TG + G+G    + L        H+    RN    K++ E + K   +  +  ++L
Sbjct: 4   SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKNHSNIHILEIDL 62

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM---ASPFMLSKDNIELQFATNHLGHFLL 144
                        E  ++ + LN+L NNAGI    A    +    +     TN +   +L
Sbjct: 63  RNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIML 122

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
               L  +KK     + E + + V   A     S           +      AY  SK A
Sbjct: 123 AKACLPLLKK--AAKANESQPMGVGRAAIINMSS----ILGSIQGNTDGGMYAYRTSKSA 176

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                K L+  L      I   SLHPG + T++  
Sbjct: 177 LNAATKSLSVDLYPQR--IMCVSLHPGWVKTDMGG 209

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 80.9 bits (199), Expect = 1e-18
 Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 30/216 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA--KVDAM 85
            G  A+VTGA  GIG E A  L  RG  VI+   N     +  E +V  I         +
Sbjct: 17  EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN---STESAEEVVAAIKKNGSDAACV 73

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQ--FATNHLGHFL 143
           + +V  +  + +   E       L+I+ +N+G+++   +      E    F  N  G F 
Sbjct: 74  KANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQF- 132

Query: 144 LTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKL 203
                    ++  +     GR++ + S   +                       Y  SK 
Sbjct: 133 ------FVAREAYKHLEIGGRLILMGSITGQAKA--------------VPKHAVYSGSKG 172

Query: 204 ANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           A    A+ +A  + +    IT N + PG I T+++ 
Sbjct: 173 AIETFARCMAIDMADKK--ITVNVVAPGGIKTDMYH 206

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (195), Expect = 2e-18
 Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 34/214 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G   I+T A+ GIG   A   A  G  VI    N +  +++ +      P  +   ++ 
Sbjct: 5   DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY-----PGIQTRVLD- 58

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGI--MASPFMLSKDNIELQFATNHLGHFLLT 145
                 + +K   ++ ++   L++L N AG     +     + + +     N    +L+ 
Sbjct: 59  -----VTKKKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMI 113

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L  M        + G I+N+SS A                     +   Y  +K A 
Sbjct: 114 KAFLPKMLA-----QKSGNIINMSSVASSVK--------------GVVNRCVYSTTKAAV 154

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           I   K +A    + G  I  N + PG++ T   +
Sbjct: 155 IGLTKSVAADFIQQG--IRCNCVCPGTVDTPSLQ 186

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 78.7 bits (193), Expect = 3e-18
 Identities = 42/214 (19%), Positives = 69/214 (32%), Gaps = 37/214 (17%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           +A+VTG +SG+G   A  L  RG  V++                       +  +E DV+
Sbjct: 3   SALVTGGASGLGRAAALALKARGYRVVVLDLRREGE--------------DLIYVEGDVT 48

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFM-----LSKDNIELQFATNHLGHFLLT 145
               VR+  +    +     ++      +A   +        ++       N LG F + 
Sbjct: 49  REEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVL 108

Query: 146 HLLLDTMKK-TAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
            L    M++       + G IVN +S A                        AY  SK  
Sbjct: 109 RLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQI---------------GQAAYAASKGG 153

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLF 238
            +      A+ L   G  I   ++ PG   T L 
Sbjct: 154 VVALTLPAARELAGWG--IRVVTVAPGLFDTPLL 185

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 78.7 bits (193), Expect = 5e-18
 Identities = 46/211 (21%), Positives = 68/211 (32%), Gaps = 25/211 (11%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
            A+VTGA  GIG   A  L   G  V +A  N A  K V   I +        A+++DVS
Sbjct: 3   VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVS 60

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQF--ATNHLGHFLLTHLL 148
               V     +        ++++NNAG+  S  + S     +      N  G        
Sbjct: 61  DRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAA 120

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
           ++  KK                  +                        Y  SK A    
Sbjct: 121 VEAFKKEGHGGKIINACSQAGHVGNPELA-------------------VYSSSKFAVRGL 161

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +  A+ L   G  IT N   PG + T ++ 
Sbjct: 162 TQTAARDLAPLG--ITVNGYCPGIVKTPMWA 190

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 78.2 bits (192), Expect = 6e-18
 Identities = 43/212 (20%), Positives = 81/212 (38%), Gaps = 33/212 (15%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
              + +VTG + GIG   A+ LA  G  V +  R   A K +               +E+
Sbjct: 6   VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF-------------GVEV 52

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHL 147
           DV+   +V +  +       P+ +L++NAG+ A  F++     + +   N          
Sbjct: 53  DVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRV- 111

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
                   + + ++ GR++ + S +  +                  +   Y  SK   I 
Sbjct: 112 --AQRASRSMQRNKFGRMIFIGSVSGLW---------------GIGNQANYAASKAGVIG 154

Query: 208 HAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            A+ +    +    N+TAN + PG I T++ R
Sbjct: 155 MARSI--ARELSKANVTANVVAPGYIDTDMTR 184

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.8 bits (188), Expect = 1e-17
 Identities = 27/214 (12%), Positives = 54/214 (25%), Gaps = 35/214 (16%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
               +V G    +G+   +    R   V                         V   +  
Sbjct: 2   ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVI---------VKMTDSF 52

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAGIMASPFML---SKDNIELQFATNHLGHFLLT 145
                 V     +     + ++ ++  AG  A           N +L +  +     + +
Sbjct: 53  TEQADQVTAEVGKLLGDQK-VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISS 111

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
           HL    +K         G +    ++A                         YG +K A 
Sbjct: 112 HLATKHLK-------EGGLLTLAGAKAALD---------------GTPGMIGYGMAKGAV 149

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
               + LA           A ++ P ++ T + R
Sbjct: 150 HQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNR 183

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

 Score = 77.5 bits (190), Expect = 2e-17
 Identities = 58/215 (26%), Positives = 80/215 (37%), Gaps = 27/215 (12%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G TA+VTG S GIG      LA  G  V    RN     +  E   ++     V+    
Sbjct: 5   KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVC 62

Query: 88  DVSSLASVRKFASEYNSQ-GRPLNILINNA--GIMASPFMLSKDNIELQFATNHLGHFLL 144
           D+ S     K            LNIL+NNA   I       ++ +  +   TN    + L
Sbjct: 63  DLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHL 122

Query: 145 THLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
           +      +     K+S+ G ++ +SS               I   SA  S   Y  SK A
Sbjct: 123 SQ-----IAYPLLKASQNGNVIFLSS---------------IAGFSALPSVSLYSASKGA 162

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
                K LA    +D  NI  NS+ PG I+T L  
Sbjct: 163 INQMTKSLACEWAKD--NIRVNSVAPGVILTPLVE 195

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 73.7 bits (180), Expect = 3e-16
 Identities = 45/214 (21%), Positives = 78/214 (36%), Gaps = 28/214 (13%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
            G TA++TG++ GIG   A      G  V +A  N+ A +     I          A+ L
Sbjct: 4   DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-----GPAACAIAL 58

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIM--ASPFMLSKDNIELQFATNHLGHFLLT 145
           DV+  AS+ +  +E   +   ++IL+NNA +   A    +++++ +  FA N  G   + 
Sbjct: 59  DVTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMM 118

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
             +   M                          + I              G Y  +K A 
Sbjct: 119 QAVARAMIA-------------------GGRGGKIINMASQAGRRGEALVGVYCATKAAV 159

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
           I   +    +L   G  I  N++ PG +    + 
Sbjct: 160 ISLTQSAGLNLIRHG--INVNAIAPGVVDGEHWD 191

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 8e-16
 Identities = 40/215 (18%), Positives = 68/215 (31%), Gaps = 21/215 (9%)

Query: 29  GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
           GL A++TG +SG+G  TA  L  +G   ++     + G+   + +      A  D     
Sbjct: 5   GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEK 64

Query: 89  VSSLASVRKFASEYNSQGRPLNILINNAG---IMASPFMLSKDNIELQFATNHLGHFLLT 145
               A                   I  A     +      + ++ +     N +G F + 
Sbjct: 65  DVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVI 124

Query: 146 HLLLDTMKKTAQK-SSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 204
            L+   M +       + G I+N +S A                        AY  SK  
Sbjct: 125 RLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQV---------------GQAAYSASKGG 169

Query: 205 NILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
            +     +A+ L   G  I   ++ PG   T L  
Sbjct: 170 IVGMTLPIARDLAPIG--IRVMTIAPGLFGTPLLT 202

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 71.8 bits (175), Expect = 1e-15
 Identities = 36/213 (16%), Positives = 64/213 (30%), Gaps = 16/213 (7%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA------ 84
            A++TG +  IG   A  L  +G  V++  R+    +   + +V E+ +A+  +      
Sbjct: 3   AAVITGGARRIGHSIAVRLHQQGFRVVVHYRH---SEGAAQRLVAELNAARAGSAVLCKG 59

Query: 85  -MELDVSSLASVRKFASEYNSQGRPLNILINNAGI-MASPFMLSKDNIELQFATNHLGHF 142
            + L  S L                 ++L+NNA     +P +   D      A       
Sbjct: 60  DLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQV 119

Query: 143 LLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSK 202
                   +         R          A R      +       +     F  Y  +K
Sbjct: 120 AELF---GSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAK 176

Query: 203 LANILHAKELAKHLKEDGVNITANSLHPGSIVT 235
            A     +  A  L      I  N++ PG  + 
Sbjct: 177 HALGGLTRAAALELAPRH--IRVNAVAPGLSLL 207

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 69.9 bits (170), Expect = 5e-15
 Identities = 30/211 (14%), Positives = 56/211 (26%), Gaps = 35/211 (16%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
            IV G    +G+         G  V+    +  A       I+ +      +  +  +  
Sbjct: 5   VIVYGGKGALGSAILEFFKKNGYTVLNIDLS--ANDQADSNILVDGNKNWTEQEQSILEQ 62

Query: 92  LASVRKFASEYNSQGRPLNILINNAGIMASPFML---SKDNIELQFATNHLGHFLLTHLL 148
            AS  + +         ++ +   AG  A           N +L    +     +   L 
Sbjct: 63  TASSLQGS--------QVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLA 114

Query: 149 LDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILH 208
              +K         G +    + A                     S   YG +K A    
Sbjct: 115 TTHLK-------PGGLLQLTGAAAAM---------------GPTPSMIGYGMAKAAVHHL 152

Query: 209 AKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
              LA        N    ++ P ++ T + R
Sbjct: 153 TSSLAAKDSGLPDNSAVLTIMPVTLDTPMNR 183

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 68.3 bits (166), Expect = 3e-14
 Identities = 29/214 (13%), Positives = 60/214 (28%), Gaps = 33/214 (15%)

Query: 25  IDGTGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV 82
           +D +G  A+V G ++   +G   A  L   G  V ++ +      +  +           
Sbjct: 4   VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEK---LAEALGGA 60

Query: 83  DAMELDVSSLASVRKFASEYNSQGRPLNILINNA------GIMASPFMLSKDNIELQFAT 136
                DV+    +    +        L+ L++         +        + +  L    
Sbjct: 61  LLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEV 120

Query: 137 NHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFG 196
           +      +       +++        G IV ++  A                      + 
Sbjct: 121 SAYSLVAVARRAEPLLREG-------GGIVTLTYYASEKVVP---------------KYN 158

Query: 197 AYGQSKLANILHAKELAKHLKEDGVNITANSLHP 230
               +K A     + LA  L   GV + A S  P
Sbjct: 159 VMAIAKAALEASVRYLAYELGPKGVRVNAISAGP 192

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

 Score = 67.2 bits (163), Expect = 7e-14
 Identities = 29/210 (13%), Positives = 68/210 (32%), Gaps = 22/210 (10%)

Query: 28  TGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAM 85
           +G   +VTG +S   I    A+ +   G  +    +N      V E             +
Sbjct: 4   SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEF---AAQLGSDIVL 60

Query: 86  ELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLT 145
           + DV+  AS+    +E        +  +++ G      +       +      + H + +
Sbjct: 61  QCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISS 120

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
           +  +   K      +    ++ +S      A                 ++   G +K + 
Sbjct: 121 YSFVAMAKACRSMLNPGSALLTLSYLGAERAIP---------------NYNVMGLAKASL 165

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVT 235
             + + +A  +  +G  +  N++  G I T
Sbjct: 166 EANVRYMANAMGPEG--VRVNAISAGPIRT 193

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 64.7 bits (157), Expect = 4e-13
 Identities = 36/214 (16%), Positives = 62/214 (28%), Gaps = 41/214 (19%)

Query: 28  TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL 87
                +V  AS GIG   A VL+  G  V +  RN    K      V             
Sbjct: 3   RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVV------------ 50

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNA--GIMASPFMLSKDNIELQFATNHLGHFLLT 145
                  +RK       + + ++IL+ NA          L+ ++ +    +  L    + 
Sbjct: 51  -----CDLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIV 105

Query: 146 HLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLAN 205
              L  M                        +   +     +  S   +      +++A 
Sbjct: 106 RNYLPAM--------------------KEKGWGRIVAITSFSVISPIENLYTSNSARMAL 145

Query: 206 ILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR 239
               K L+  +   G  IT N + PG   T   +
Sbjct: 146 TGFLKTLSFEVAPYG--ITVNCVAPGWTETERVK 177

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 57.2 bits (137), Expect = 2e-10
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 20/89 (22%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS 91
            +++G ++GIG  T +VL   G  ++          D+R+A V             D+S+
Sbjct: 4   IVISGCATGIGAATRKVLEAAGHQIVGI--------DIRDAEVIA-----------DLST 44

Query: 92  LASVRK-FASEYNSQGRPLNILINNAGIM 119
               ++  A       + ++ L+  AG+ 
Sbjct: 45  AEGRKQAIADVLAKCSKGMDGLVLCAGLG 73

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

 Score = 54.3 bits (129), Expect = 2e-09
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 17/105 (16%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE--------------- 76
           A+VTGA+  +G   A  L   G  V +     AA  +   A +                 
Sbjct: 5   ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN 64

Query: 77  --IPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIM 119
                         V+      +  +   +     ++L+NNA   
Sbjct: 65  VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSF 109

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 30/228 (13%), Positives = 70/228 (30%), Gaps = 17/228 (7%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL 92
           ++TG +  IG+   R +       ++ +  +    +  E++     S + +    D+   
Sbjct: 4   LITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN-LESLSDISESNRYNFEHADICDS 62

Query: 93  ASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTM 152
           A + +   +Y       + +++ A         S         TN +G + L  +     
Sbjct: 63  AEITRIFEQYQ-----PDAVMHLAAESHVD--RSITGPAAFIETNIVGTYALLEVARKYW 115

Query: 153 KKTAQKSSREGRIVNVSSEA------HRFAYSEGIRFDKINDESAYNSFGAYGQSKLANI 206
               +      R  ++S++       H       +      + +AY     Y  SK ++ 
Sbjct: 116 SALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSD 175

Query: 207 LHAKELAKHLKEDGVNI-TANSLHPGSIVTNLFRY--NGILRGDFFSI 251
              +   +      +    +N+  P      L        L G    I
Sbjct: 176 HLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPI 223

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 31 TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAI 73
          T +VTG + G+G + AR LA RG  H+++  R+        E +
Sbjct: 11 TVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELV 54

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

 Score = 47.8 bits (112), Expect = 4e-07
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 25 IDGTGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV 82
          ID  G  A + G +   G G   A+ LA  G  +++     A           +   ++V
Sbjct: 4  IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRV 63

Query: 83 DA 84
            
Sbjct: 64 LP 65

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score = 46.9 bits (110), Expect = 9e-07
 Identities = 37/209 (17%), Positives = 72/209 (34%), Gaps = 20/209 (9%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL 92
           +VTG S  IG+ T   L   G  VI  + N+   K     +++ +       +E D+ + 
Sbjct: 4   LVTGGSGYIGSHTCVQLLQNGHDVI-ILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62

Query: 93  ASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTM 152
           A + +   ++      ++ +I+ AG+ A     S       +  N  G    T  L+  M
Sbjct: 63  ALMTEILHDHA-----IDTVIHFAGLKAVG--ESVQKPLEYYDNNVNG----TLRLISAM 111

Query: 153 KKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKEL 212
           +    K       +  S       Y +  +   +           YG+SKL       +L
Sbjct: 112 RAANVK-----NFIFSS---SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDL 163

Query: 213 AKHLKEDGVNITANSLHPGSIVTNLFRYN 241
            K   +  + +       G+  +     +
Sbjct: 164 QKAQPDWSIALLRYFNPVGAHPSGDMGED 192

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

 Score = 46.6 bits (109), Expect = 9e-07
 Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 28 TGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVRE 71
           G   ++ G ++   I    A+    +G  +     N +  K VR 
Sbjct: 4  KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRP 49

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKV 82
           A++ G    +G   A  LA  G  +++  R     +       +    A +
Sbjct: 3  VALLGGTG-NLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASI 53

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 20/196 (10%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMEL--- 87
            A++TG +   G+  A  L  +G  V    R  ++    R   + + P        L   
Sbjct: 3   VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYG 62

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHL 147
           D+S  +++ +   E                   S   +S ++ E     + +G    T  
Sbjct: 63  DLSDTSNLTRILREV-------QPDEVYNLGAMSHVAVSFESPEYTADVDAMG----TLR 111

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
           LL+ ++    +     R    S+      Y          + + +     Y  +KL    
Sbjct: 112 LLEAIRFLGLEKKT--RFYQASTSE---LYGLVQEI-PQKETTPFYPRSPYAVAKLYAYW 165

Query: 208 HAKELAKHLKEDGVNI 223
                 +       N 
Sbjct: 166 ITVNYRESYGMYACNG 181

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

 Score = 44.4 bits (103), Expect = 5e-06
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 28 TGLTAIVTGA--SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP 78
           G   +V+G    S I    ARV   +G  +++   +        + I   +P
Sbjct: 5  DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI---QRITDRLP 54

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

 Score = 43.7 bits (102), Expect = 5e-06
 Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 16/149 (10%)

Query: 22  TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAK 81
             G    G  A+V   +  +G  +A +LA  G  V++  R +   +   +++ K      
Sbjct: 16  AAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNV 75

Query: 82  VDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGH 141
             A   D +S A   K            + +           +L +   + + +   +  
Sbjct: 76  TAAETADDASRAEAVK----------GAHFVFTAGA--IGLELLPQAAWQNESSIEIVAD 123

Query: 142 FLLTHLLLDTMKKTAQKSSREGRIVNVSS 170
           +     L         K    G+      
Sbjct: 124 YNAQPPLGIGGIDATDK----GKEYGGKR 148

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 30/193 (15%), Positives = 59/193 (30%), Gaps = 31/193 (16%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL 92
           ++TG +  +G+     L + G  V   V N   G+  +  +   I     + +  DV   
Sbjct: 5   LITGGAGFVGSHLTDKLMMDGHEVT-VVDNFFTGR--KRNVEHWIGHENFELINHDVVEP 61

Query: 93  ASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTM 152
             +             ++ + + A   + P      N      TN +G    T  +L   
Sbjct: 62  LYIE------------VDQIYHLASPASPP--NYMYNPIKTLKTNTIG----TLNMLGLA 103

Query: 153 KKTAQKSSREGRIVNVSS-EAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKE 211
           K+         R++  S+ E +          D     +       Y + K         
Sbjct: 104 KRVGA------RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYA 157

Query: 212 LAKHLKEDGVNIT 224
                K++GV + 
Sbjct: 158 YM---KQEGVEVR 167

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 21/196 (10%)

Query: 32  AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA----MEL 87
           A++TG +   G+  A  L  +G  V   VR  ++    R   + + P A ++        
Sbjct: 4   ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYG 63

Query: 88  DVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHL 147
           D++    + K  +E                   S   +S D  E     + +G    T  
Sbjct: 64  DLTDSTCLVKIINEVKPT-------EIYNLGAQSHVKISFDLAEYTADVDGVG----TLR 112

Query: 148 LLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 207
           LLD +K     +S   +    S+        E        + + +     YG +KL    
Sbjct: 113 LLDAVKTCGLINSV--KFYQASTSELYGKVQEI----PQKETTPFYPRSPYGAAKLYAYW 166

Query: 208 HAKELAKHLKEDGVNI 223
                 +      VN 
Sbjct: 167 IVVNFREAYNLFAVNG 182

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 40.7 bits (94), Expect = 9e-05
 Identities = 35/193 (18%), Positives = 61/193 (31%), Gaps = 16/193 (8%)

Query: 33  IVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           IVTG +  IG+     +      VHV +  +   AG       ++ I   +V+ +  D++
Sbjct: 6   IVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKAN---LEAILGDRVELVVGDIA 62

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLD 150
               V K A++ +                 S    S ++      TN +G + L      
Sbjct: 63  DAELVDKLAAKAD---------AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARK 113

Query: 151 TMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAK 210
              +    S+ E        E            +K   E+ YN    Y  +K A+ L  K
Sbjct: 114 YDIRFHHVSTDEVYGDLPLREDL--PGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVK 171

Query: 211 ELAKHLKEDGVNI 223
              +         
Sbjct: 172 AWVRSFGVKATIS 184

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELD 88
          G   +VTGA+  + +     L   G  V    R+ +   ++++    + P     A+  D
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVED 70

Query: 89 VS 90
          + 
Sbjct: 71 ML 72

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 17/189 (8%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
             +VTG +  IG+ T   L   G   +    N++       A ++ +    +   E+D+ 
Sbjct: 3   IVLVTGGAGYIGSHTVVELIENGYDCV-VADNLSNSTYDSVARLEVLTKHHIPFYEVDLC 61

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLD 150
               + K   EY      ++ +I+ AG+ A             +  N LG  +L  L+  
Sbjct: 62  DRKGLEKVFKEYK-----IDSVIHFAGLKAVGESTQIPLR--YYHNNILGTVVLLELMQQ 114

Query: 151 TMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAK 210
                        + V  SS       +       I +E        YG +K A      
Sbjct: 115 YNVS---------KFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILN 165

Query: 211 ELAKHLKED 219
           +L    K+ 
Sbjct: 166 DLYNSDKKS 174

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 6/56 (10%), Positives = 14/56 (25%)

Query: 34 VTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV 89
          + G +  IG          G    +  R        +  ++          +E  +
Sbjct: 8  IVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASL 63

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 329

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 32 AIVTGA--SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAME 86
            + G   ++G G   A+ L+ R V +I  +        ++     +  +  +   +
Sbjct: 5  CFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKD 61

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 21/193 (10%)

Query: 31  TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
           +A+VTG +   G   A++L  +G  V   V   ++    R  + +      +   + D++
Sbjct: 2   SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT--RWRLRELGIEGDIQYEDGDMA 59

Query: 91  SLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLD 150
              SV++   +   Q               S    S +        + LG   L      
Sbjct: 60  DACSVQRAVIKAQPQ-------EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLE---- 108

Query: 151 TMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAK 210
                 ++ S E R    S+          I+ ++ ++ + +     YG +KL       
Sbjct: 109 ----AIRQFSPETRFYQASTS----EMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITV 160

Query: 211 ELAKHLKEDGVNI 223
              +       + 
Sbjct: 161 NYRESFGLHASSG 173

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 5/69 (7%)

Query: 31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS 90
          T  V GA+   G    RV A  G HV   V ++                  V   +  + 
Sbjct: 5  TIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQ-----AIPNVTLFQGPLL 59

Query: 91 SLASVRKFA 99
          +   +    
Sbjct: 60 NNVPLMDTL 68

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 19/192 (9%), Positives = 52/192 (27%), Gaps = 38/192 (19%)

Query: 33  IVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSL 92
            + G    +G+   R L  RG   +            R+              EL++   
Sbjct: 6   FIAGHRGMVGSAIRRQLEQRGDVEL--------VLRTRD--------------ELNLLDS 43

Query: 93  ASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTM 152
            +V  F +            +  A       + +          N +        ++   
Sbjct: 44  RAVHDFFASERIDQ------VYLAAAKVGGIVANNTYPADFIYQNMMI----ESNIIHAA 93

Query: 153 KKTAQKSSREGRIVNVSS-EAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKE 211
            +         +++ + S   +     + +   ++   +   +   Y  +K+A I   + 
Sbjct: 94  HQNDVN-----KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCES 148

Query: 212 LAKHLKEDGVNI 223
             +    D  ++
Sbjct: 149 YNRQYGRDYRSV 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	100.0
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	100.0
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	100.0
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	100.0
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	100.0
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	100.0
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	100.0
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	100.0
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	100.0
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	100.0
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	100.0
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	100.0
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	100.0
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	100.0
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	100.0
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	100.0
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	100.0
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	100.0
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	100.0
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	100.0
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	100.0
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	100.0
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	100.0
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	100.0
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	100.0
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	100.0
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	100.0
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	100.0
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	100.0
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	100.0
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	100.0
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	100.0
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	100.0
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	100.0
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	100.0
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	100.0
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	100.0
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	100.0
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	100.0
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	100.0
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	100.0
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	100.0
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	100.0
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	100.0
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	100.0
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	100.0
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	100.0
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	100.0
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	100.0
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	100.0
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	100.0
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	100.0
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	100.0
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	100.0
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	100.0
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	100.0
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	100.0
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	100.0
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	100.0
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.98
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.97
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.97
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.97
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.97
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.96
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.94
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.88
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.84
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.82
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.8
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.79
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.79
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.79
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.78
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.78
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.77
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.76
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.76
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.74
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.73
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.73
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.73
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.72
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.71
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.7
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.69
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.68
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.66
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.54
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.44
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	99.44
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	99.43
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	99.27
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	99.23
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.23
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.13
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	99.11
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.86
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.36
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.1
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.09
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.07
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	98.04
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.93
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.91
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.88
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.87
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	97.8
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.79
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.76
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.73
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.71
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.71
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	97.71
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.63
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.56
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.5
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.5
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.5
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.48
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.46
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	97.4
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.38
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.37
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.33
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.3
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.28
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.28
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.27
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.24
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.23
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.21
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.18
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	97.17
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.15
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.14
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.13
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.12
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.11
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.11
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.09
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.05
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.02
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.96
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.95
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.94
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.93
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.9
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.89
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.85
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.81
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.8
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.77
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.75
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.73
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.72
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.68
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.67
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.62
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.61
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.56
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.55
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.52
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.5
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.43
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	96.42
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.41
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.35
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.29
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.2
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.04
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.9
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.84
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.79
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.72
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	95.7
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.62
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.58
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.18
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	95.11
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.09
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.99
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.94
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	94.81
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	94.8
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	94.7
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	94.7
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.66
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.5
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	94.5
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	94.49
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.49
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.3
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	94.28
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.26
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.2
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	94.11
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.04
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.03
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	93.99
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.96
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	93.92
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	93.89
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	93.88
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	93.77
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	93.57
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.5
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	93.43
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	93.41
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.41
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	93.36
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	93.34
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	93.3
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.29
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	93.13
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	93.1
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.01
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	92.83
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.8
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	92.78
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	92.71
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	92.7
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	92.59
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	92.55
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	92.44
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	92.09
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	92.07
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	92.04
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	92.03
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	91.98
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	91.93
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	91.89
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	91.86
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.81
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.74
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	91.61
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	91.54
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.5
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.24
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	91.04
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	90.79
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	90.73
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	90.53
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	90.47
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.42
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	90.25
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	90.24
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.21
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	90.17
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	90.02
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	89.96
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	89.61
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	89.19
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	89.14
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	89.08
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	88.92
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.6
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	88.5
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	88.23
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.23
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	88.16
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	88.08
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	88.07
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	87.7
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.69
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	87.63
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	87.62
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	87.58
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.4
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	87.38
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	87.11
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	86.8
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	86.61
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	86.56
d1qkia1	203	Glucose 6-phosphate dehydrogenase, N-terminal doma	86.54
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	86.52
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	86.5
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	86.47
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	86.46
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	86.15
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	86.09
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	85.75
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	85.74
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	85.69
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	85.48
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	85.32
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	85.08
d1m1na_	477	Nitrogenase iron-molybdenum protein, alpha chain {	84.94
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	84.81
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	84.8
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.78
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	84.64
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	84.61
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	84.42
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	84.28
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.06
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	84.0
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	83.55
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	83.5
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	83.29
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	83.02
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	82.98
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	82.89
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	82.73
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	82.55
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	82.11
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	81.81
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	81.8
d2fr1a2	209	Erythromycin synthase, eryAI, 1st ketoreductase mo	81.52
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	81.4
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	81.21
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	81.15
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	81.09
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	80.98
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	80.61
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	80.47
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	80.23
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	80.07

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=4.2e-45  Score=304.37  Aligned_cols=196  Identities=30%  Similarity=0.331  Sum_probs=177.8

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..++++||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++.+.  +.++.++++|++|+++++++++++
T Consensus         4 ~~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvt~~~~v~~~~~~~   81 (251)
T d2c07a1           4 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKI   81 (251)
T ss_dssp             CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHH
Confidence            347789999999999999999999999999999999999999999999999776  668999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+++|++|+||||||...  +..+.+.++|.+++++|+.++++++|+++|+|++     ++.|+||++||..+..     
T Consensus        82 ~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~-----~~~G~IVnisS~~~~~-----  151 (251)
T d2c07a1          82 LTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMIN-----NRYGRIINISSIVGLT-----  151 (251)
T ss_dssp             HHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----HTCEEEEEECCTHHHH-----
T ss_pred             HHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCccccc-----CCCeEEEEECCHHhcC-----
Confidence            999999999999999774  4677899999999999999999999999999998     4679999999999887     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                +.++..+|+++|+|+.+|+|++|.|++++|  ||||+|+||+++|++.+...
T Consensus       152 ----------~~~~~~~Y~asKaal~~ltr~lA~el~~~g--IrVN~V~PG~v~T~~~~~~~  201 (251)
T d2c07a1         152 ----------GNVGQANYSSSKAGVIGFTKSLAKELASRN--ITVNAIAPGFISSDMTDKIS  201 (251)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCC-----CC
T ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHHHHhhhhC--eEEEEEccCCEecccccccC
Confidence                      556778999999999999999999999999  99999999999999987654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=100.00  E-value=2.7e-45  Score=306.71  Aligned_cols=194  Identities=23%  Similarity=0.284  Sum_probs=180.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++....++.++.++++|++|+++++++++++.++
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999988777778999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          106 GRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       106 ~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      +|++|+||||||+..   ++.+++.++|++++++|+.++++++|+++|+|++     ++.|+||++||..+..       
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~-----~~~G~Ii~isS~~~~~-------  148 (258)
T d1iy8a_          81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMRE-----QGSGMVVNTASVGGIR-------  148 (258)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCCEEEEECCGGGTS-------
T ss_pred             hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhh-----hcCCCCcccccHhhcc-------
Confidence            999999999999753   4567899999999999999999999999999987     4689999999999876       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +.+....|+++|+|+.+|+|++|.|++++|  ||||+|+||+++|++.+..
T Consensus       149 --------~~~~~~~Y~asKaal~~lt~~lA~el~~~g--IrVN~i~PG~v~T~~~~~~  197 (258)
T d1iy8a_         149 --------GIGNQSGYAAAKHGVVGLTRNSAVEYGRYG--IRINAIAPGAIWTPMVENS  197 (258)
T ss_dssp             --------BCSSBHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBCSHHHHHH
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHhCccC--ceEEEEeeCcccCHHHHHH
Confidence                    556789999999999999999999999999  9999999999999987643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.7e-45  Score=305.37  Aligned_cols=195  Identities=28%  Similarity=0.367  Sum_probs=181.1

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..|+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.  +.++.++++|++|+++++++++++
T Consensus         5 d~m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~--g~~~~~~~~Dvs~~~~~~~~~~~~   82 (255)
T d1fmca_           5 DNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFA   82 (255)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEccCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999999886  668999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          103 NSQGRPLNILINNAGIMAS-PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      .+++|++|+||||||...+ +.+.+.++|++++++|+.++++++|+++|+|.+     .++|+||++||.++..      
T Consensus        83 ~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-----~~~g~Ii~isS~~~~~------  151 (255)
T d1fmca_          83 ISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEK-----NGGGVILTITSMAAEN------  151 (255)
T ss_dssp             HHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTC------
T ss_pred             HHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcc-----ccccccccccccchhc------
Confidence            9999999999999998743 457899999999999999999999999999998     4678999999998776      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.++..+|+++|+|+.+|+|++|.|++++|  ||||+|+||+|+|++++..
T Consensus       152 ---------~~~~~~~Y~asKaal~~lt~~lA~el~~~g--IrVN~I~PG~i~T~~~~~~  200 (255)
T d1fmca_         152 ---------KNINMTSYASSKAAASHLVRNMAFDLGEKN--IRVNGIAPGAILTDALKSV  200 (255)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTT--EEEEEEEECSBCSHHHHTT
T ss_pred             ---------cccccccchhHHHHHHHHHHHHHHHhCccC--eEEEEeeeCcCcChHhhcc
Confidence                     566788999999999999999999999999  9999999999999988654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.5e-45  Score=302.76  Aligned_cols=191  Identities=29%  Similarity=0.385  Sum_probs=176.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++||++|||||++|||+++|++|+++|++|++++|+++.++++.+++     +.+...+.+|++|+++++++++++.++
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   75 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL-----GANGKGLMLNVTDPASIESVLEKIRAE   75 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh-----CCCCcEEEEEecCHHHhhhhhhhhhcc
Confidence            589999999999999999999999999999999999999888888777     346789999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  ++.+.+.++|++.+++|+.++++++|+++|+|++     ++.|+||++||..+..        
T Consensus        76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~-----~~~G~II~isS~~~~~--------  142 (243)
T d1q7ba_          76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMK-----KRHGRIITIGSVVGTM--------  142 (243)
T ss_dssp             TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCHHHHH--------
T ss_pred             cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHH-----cCCCEeeeecchhhcC--------
Confidence            999999999999774  4678899999999999999999999999999987     4579999999999877        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                             +.++..+|+++|+|+.+|+|+++.|++++|  ||||+|+||+++|++.+....
T Consensus       143 -------~~~~~~~Y~asKaal~~lt~~lA~ela~~g--IrVN~I~PG~i~T~~~~~~~~  193 (243)
T d1q7ba_         143 -------GNGGQANYAAAKAGLIGFSKSLAREVASRG--ITVNVVAPGFIETDMTRALSD  193 (243)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHTSCH
T ss_pred             -------CCCCCHHHHHHHHHHHHHHHHHHHHhCccC--eEEEEEecceEechhhhhhhh
Confidence                   556788999999999999999999999999  999999999999999876544

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.1e-44  Score=301.73  Aligned_cols=195  Identities=25%  Similarity=0.327  Sum_probs=177.8

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+.. +.++.++++|++|+++++++++++.+
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999998887654 56789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|+||||||+..  ++.+.+.++|++.+++|+.++++++|+++|+|++     ++.|+||+++|..+...      
T Consensus        80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-----~~~G~Ii~i~S~~~~~~------  148 (251)
T d1vl8a_          80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRE-----SDNPSIINIGSLTVEEV------  148 (251)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-----CSSCEEEEECCGGGTCC------
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccc-----cccccccccccchhccc------
Confidence            9999999999999763  5678999999999999999999999999999987     56899999999765431      


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +.+....|+++|+|+.+|+|+++.|++++|  ||||+|+||+++|++.+..
T Consensus       149 --------~~~~~~~Y~asKaal~~lt~~lA~e~~~~g--IrVN~I~PG~i~T~~~~~~  197 (251)
T d1vl8a_         149 --------TMPNISAYAASKGGVASLTKALAKEWGRYG--IRVNVIAPGWYRTKMTEAV  197 (251)
T ss_dssp             --------CSSSCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCBCSTTTHHH
T ss_pred             --------cCccccchHHHHHhHHHHHHHHHHHhcccC--eEEEEEeeCcccCHHHHhc
Confidence                    444678999999999999999999999999  9999999999999998754

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=100.00  E-value=2.1e-44  Score=301.41  Aligned_cols=194  Identities=29%  Similarity=0.313  Sum_probs=179.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .++|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.  +.++.++++|++|+++++++++++.
T Consensus         3 ~f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~   80 (259)
T d2ae2a_           3 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVA   80 (259)
T ss_dssp             TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeeCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999876  6688999999999999999999999


Q ss_pred             cCCC-CeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          104 SQGR-PLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       104 ~~~g-~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      ++++ ++|++|||||...  ++.+.+.++|++++++|+.++++++|+++|+|.+     ++.|+||++||..+..     
T Consensus        81 ~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-----~~~G~Ii~isS~~~~~-----  150 (259)
T d2ae2a_          81 NHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKA-----SERGNVVFISSVSGAL-----  150 (259)
T ss_dssp             HHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TSSEEEEEECCGGGTS-----
T ss_pred             HHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhh-----hccccccccccccccc-----
Confidence            8886 7999999999774  4567899999999999999999999999999998     6789999999999876     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                +.+....|+++|+|+.+|+|++|.|++++|  ||||+|+||+|+|++.+..
T Consensus       151 ----------~~~~~~~Y~asKaal~~lt~~lA~el~~~g--IrVN~I~PG~i~T~~~~~~  199 (259)
T d2ae2a_         151 ----------AVPYEAVYGATKGAMDQLTRCLAFEWAKDN--IRVNGVGPGVIATSLVEMT  199 (259)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEEECSBCSHHHHHH
T ss_pred             ----------ccccccchHHHHHHHHHHHHHHHHHhCcCc--eEEEEeeeCcccCHHHHhh
Confidence                      556778999999999999999999999998  9999999999999987653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=100.00  E-value=8.4e-45  Score=302.74  Aligned_cols=194  Identities=28%  Similarity=0.323  Sum_probs=177.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++.++++|++|+++++++++++.++
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEcccCCHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999988877766654     457899999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  ++.+.+.++|++.+++|+.++++++|+++|+|++     ++.|+||++||..+..        
T Consensus        77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~-----~~~G~II~isS~~~~~--------  143 (254)
T d1hdca_          77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKD-----AGGGSIVNISSAAGLM--------  143 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS--------
T ss_pred             cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhh-----cCCCeecccccchhcc--------
Confidence            999999999999874  4577899999999999999999999999999987     4579999999999876        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGILRG  246 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~~~~  246 (255)
                             +.++...|+++|+|+.+|+|++|.|++++|  ||||+|+||+++|+++........
T Consensus       144 -------~~~~~~~Y~asKaal~~lt~~lA~e~a~~g--IrVN~I~PG~v~T~~~~~~~~~~~  197 (254)
T d1hdca_         144 -------GLALTSSYGASKWGVRGLSKLAAVELGTDR--IRVNSVHPGMTYTPMTAETGIRQG  197 (254)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHHHTCCCS
T ss_pred             -------cccchhhHHHHHHHHHHHHHHHHHHhCCCc--eEEEEeeeCcccCccchhcCHHHH
Confidence                   556788999999999999999999999999  999999999999999887665443

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.7e-44  Score=297.96  Aligned_cols=191  Identities=25%  Similarity=0.305  Sum_probs=175.5

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      -.++||++|||||++|||+++|++|+++|++|++++|++++++++.+++     +.++.++++|++|+++++++++++.+
T Consensus         2 G~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   76 (244)
T d1nffa_           2 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVT   76 (244)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----hCcceEEEeecCCHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999998887777766     34688999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|+||||||...  ++.+++.++|++++++|+.++++++|++.|.|.+     ++.|+||++||..+..       
T Consensus        77 ~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~-----~~~G~Ii~isS~~~~~-------  144 (244)
T d1nffa_          77 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKE-----AGRGSIINISSIEGLA-------  144 (244)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS-------
T ss_pred             HhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHh-----cCcceEEecccccccc-------
Confidence            9999999999999874  5678999999999999999999999999999998     4679999999999876       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                              +.+....|+++|+|+.+|+|+++.|++++|  ||||+|+||+++|++.+...
T Consensus       145 --------~~~~~~~Y~asKaal~~ltk~lA~el~~~g--IrVN~I~PG~i~T~~~~~~~  194 (244)
T d1nffa_         145 --------GTVACHGYTATKFAVRGLTKSTALELGPSG--IRVNSIHPGLVKTPMTDWVP  194 (244)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCSGGGTTSC
T ss_pred             --------ccccccchhhHHHHHHHHHHHHHHHhcccC--EEEEEEeeCCccChhHhhhh
Confidence                    566788999999999999999999999999  99999999999999976543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.5e-44  Score=300.90  Aligned_cols=196  Identities=26%  Similarity=0.236  Sum_probs=165.5

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..++|+||++|||||++|||+++|++|+++|++|++++|+++++++..+++...  +.++.++.||++++++++++++++
T Consensus         2 ~~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d1xq1a_           2 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTV   79 (259)
T ss_dssp             CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEeccCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999999876  568999999999999999999999


Q ss_pred             hcCC-CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          103 NSQG-RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       103 ~~~~-g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      .+++ |++|++|||||...  ++.+.+.++|++.+++|+.++++++|+++|+|++     ++.|+||++||..+..    
T Consensus        80 ~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~-----~~~G~Iv~isS~~~~~----  150 (259)
T d1xq1a_          80 SSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKA-----SGCGNIIFMSSIAGVV----  150 (259)
T ss_dssp             HHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSSCEEEEEC----------
T ss_pred             HHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccc-----cccccccccccccccc----
Confidence            9998 78999999999774  5678999999999999999999999999999987     4679999999999876    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                 +.++...|+++|+|+.+|+|++|.|++++|  ||||+|+||+|+|++.+...
T Consensus       151 -----------~~~~~~~Y~asKaal~~lt~~lA~e~~~~g--IrVN~V~PG~i~T~~~~~~~  200 (259)
T d1xq1a_         151 -----------SASVGSIYSATKGALNQLARNLACEWASDG--IRANAVAPAVIATPLAEAVY  200 (259)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEECCSCC--------
T ss_pred             -----------cccccccccccccchhhhhHHHHHHhcccC--eEEEEeccCcccCHHhhhhc
Confidence                       455678999999999999999999999999  99999999999999987543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=100.00  E-value=4.4e-44  Score=297.54  Aligned_cols=192  Identities=28%  Similarity=0.360  Sum_probs=165.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++||++|||||++|||+++|++|+++|++|++++|+.+.  +..+.+...  +.++.++++|++|+++++++++++.++
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~--g~~~~~~~~Dvs~~~~v~~~~~~~~~~   77 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNL--GRRVLTVKCDVSQPGDVEAFGKQVIST   77 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHc--CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999998753  233334443  668999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||+..  ++.+.+.++|++.+++|+.++++++|+++|+|++     ++.|+||++||..+..        
T Consensus        78 ~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-----~~~G~Iv~isS~~~~~--------  144 (247)
T d2ew8a1          78 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKR-----NGWGRIINLTSTTYWL--------  144 (247)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGGS--------
T ss_pred             cCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHh-----cCCCCccccccchhcc--------
Confidence            999999999999874  4577899999999999999999999999999998     4579999999999876        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                             +.+....|++||+|+.+|+|+++.|++++|  ||||+|+||+++|++.+....
T Consensus       145 -------~~~~~~~Y~asKaal~~ltk~lA~ela~~g--IrVN~I~PG~i~T~~~~~~~~  195 (247)
T d2ew8a1         145 -------KIEAYTHYISTKAANIGFTRALASDLGKDG--ITVNAIAPSLVRTATTEASAL  195 (247)
T ss_dssp             -------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCC----------
T ss_pred             -------cCcccccchhhhccHHHHHHHHHHHhcccC--eEEEEEeeCCCCCcccccccc
Confidence                   566788999999999999999999999999  999999999999999876543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=2.1e-44  Score=301.79  Aligned_cols=192  Identities=30%  Similarity=0.301  Sum_probs=170.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      |+||++|||||++|||+++|++|+++|++|++++|+. +.++++.+++.+.. +.++.++++|++|+++++++++++.++
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999975 45677777776553 568999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||+..  ++.+.+.++|.+++++|+.++++++|+++|+|++     ++.|+||++||..+..        
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~-----~~~G~Iv~isS~~~~~--------  147 (260)
T d1x1ta1          81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKK-----QGFGRIINIASAHGLV--------  147 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS--------
T ss_pred             hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhh-----cCCceEeeccccccee--------
Confidence            999999999999874  4677899999999999999999999999999998     4679999999999876        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                             +.++..+|+++|+|+.+|+|+++.|++++|  ||||+|+||+|+|++++..
T Consensus       148 -------~~~~~~~Y~asKaal~~lt~~lA~el~~~g--IrVN~I~PG~i~T~~~~~~  196 (260)
T d1x1ta1         148 -------ASANKSAYVAAKHGVVGFTKVTALETAGQG--ITANAICPGWVRTPLVEKQ  196 (260)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTT--EEEEEEEECCBCC------
T ss_pred             -------ccCCcchhhhhhhhHHHhHHHHHHHhchhC--cEEEEEecCCCCChhhhhh
Confidence                   556778999999999999999999999998  9999999999999997654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=100.00  E-value=4.9e-44  Score=298.79  Aligned_cols=191  Identities=26%  Similarity=0.387  Sum_probs=174.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |.++||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++     +.++.++++|++|+++++++++++.+
T Consensus         1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~~~~~~~~Dvt~~~~v~~~~~~~~~   75 (256)
T d1k2wa_           1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-----GPAACAIALDVTDQASIDRCVAELLD   75 (256)
T ss_dssp             CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEeeCCCHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999998888887776     55789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|+||||||...  ++.+.+.++|++.+++|+.|+++++|+++|.+.++    +++|+||++||..+..       
T Consensus        76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~----~~~g~Iv~isS~~~~~-------  144 (256)
T d1k2wa_          76 RWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAG----GRGGKIINMASQAGRR-------  144 (256)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TSCEEEEEECCGGGTS-------
T ss_pred             HhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHh----ccCCccccccchhhcc-------
Confidence            9999999999999764  56778999999999999999999999999987653    4579999999999876       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +.+....|+++|+|+.+|+|++|.|++++|  ||||+|+||+++|++++..
T Consensus       145 --------~~~~~~~Y~asKaal~~lt~~lA~el~~~g--IrVN~V~PG~i~T~~~~~~  193 (256)
T d1k2wa_         145 --------GEALVGVYCATKAAVISLTQSAGLNLIRHG--INVNAIAPGVVDGEHWDGV  193 (256)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCCTTHHHH
T ss_pred             --------ccccccchhhhhhHHHHHHHHHHHHhcccC--eEEEEEecCCCCchhhhhh
Confidence                    566788999999999999999999999999  9999999999999987644

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=100.00  E-value=3.6e-44  Score=300.25  Aligned_cols=191  Identities=25%  Similarity=0.251  Sum_probs=177.5

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .++||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++.+.  +.++.++.||++|+++++++++++.++
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999876  668999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          106 GRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       106 ~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      +|++|++|||||...   ++.+++.++|++++++|+.++++++|+++|+|.+     ++.|+||++||..+..       
T Consensus        80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~-----~~~G~II~isS~~~~~-------  147 (260)
T d1zema1          80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMIT-----QNYGRIVNTASMAGVK-------  147 (260)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCHHHHS-------
T ss_pred             hCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhh-----hcCCCCCeeechhhcc-------
Confidence            999999999999763   4677999999999999999999999999999987     4689999999999876       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                              +.+....|+++|+|+.+|+|++|.|++++|  ||||+|+||+|+|+++..
T Consensus       148 --------~~~~~~~Y~asKaal~~ltk~lA~el~~~g--IrVN~I~PG~v~T~~~~~  195 (260)
T d1zema1         148 --------GPPNMAAYGTSKGAIIALTETAALDLAPYN--IRVNAISPGYMGPGFMWE  195 (260)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCSSHHHH
T ss_pred             --------CCcchHHHHHHHHHHHHHHHHHHHHhhhhC--CEEEEeccCcccCcchhh
Confidence                    556788999999999999999999999999  999999999999998643

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=100.00  E-value=9.6e-44  Score=294.21  Aligned_cols=191  Identities=23%  Similarity=0.335  Sum_probs=176.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCe-------EEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVH-------VIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~-------Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +++|||||++|||+++|++|+++|++       |++++|+.+.++++.+++.+.  +.++.++.||++|+++++++++++
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHH
Confidence            57899999999999999999999997       999999999999999999876  678999999999999999999999


Q ss_pred             hcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          103 NSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      .+++|++|+||||||...  ++.+.+.++|++++++|+.|+++++|+++|+|++     ++.|+||++||.++..     
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~-----~~~G~Ii~isS~~~~~-----  149 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMER-----QHSGHIFFITSVAATK-----  149 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS-----
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHh-----cCCCceEEEechhhcC-----
Confidence            999999999999999774  4677899999999999999999999999999998     4679999999999877     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCcc
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGIL  244 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~~  244 (255)
                                +.++...|+++|+|+.+|+|+++.|++++|  ||||+|+||+|+|+|++..+..
T Consensus       150 ----------~~~~~~~Y~asK~al~~lt~~la~el~~~g--Irvn~i~PG~v~T~~~~~~~~~  201 (240)
T d2bd0a1         150 ----------AFRHSSIYCMSKFGQRGLVETMRLYARKCN--VRITDVQPGAVYTPMWGKVDDE  201 (240)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTT--EEEEEEEECCBCSTTTCCCCST
T ss_pred             ----------CCCCChHHHHHHHHHHHHHHHHHHHhCcCC--eEEEEeeeCcccCchhhhcCHh
Confidence                      566788999999999999999999999998  9999999999999998876544

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=100.00  E-value=1.2e-43  Score=296.39  Aligned_cols=189  Identities=26%  Similarity=0.320  Sum_probs=174.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |++|||||++|||+++|++|+++|++|++++|++++++++.+++.+.  +.++.+++||++|+++++++++++.++||++
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   79 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence            78899999999999999999999999999999999999999999876  6689999999999999999999999999999


Q ss_pred             eEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          110 NILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       110 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      |+||||||+..  ++.+++.++|++++++|+.|+++++|+++|+|.++    ++.++||++||..+..            
T Consensus        80 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~----~~~g~Iv~isS~~~~~------------  143 (255)
T d1gega_          80 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKE----GHGGKIINACSQAGHV------------  143 (255)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TSCEEEEEECCGGGTS------------
T ss_pred             cEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhh----ccccccccccchhhcc------------
Confidence            99999999774  46789999999999999999999999999988763    4568999999999876            


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                         +.+....|+++|+|+.+|+|++|.|++++|  ||||+|+||+++|+++...
T Consensus       144 ---~~~~~~~Y~asKaal~~ltk~lA~el~~~g--IrVN~I~PG~i~T~~~~~~  192 (255)
T d1gega_         144 ---GNPELAVYSSSKFAVRGLTQTAARDLAPLG--ITVNGYCPGIVKTPMWAEI  192 (255)
T ss_dssp             ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBSSHHHHHH
T ss_pred             ---cCcccccchhCHHHHHhhHHHHHHHhhhhC--cEEEEEecCcccChHHhhh
Confidence               566788999999999999999999999999  9999999999999987654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=100.00  E-value=4.6e-44  Score=299.21  Aligned_cols=190  Identities=28%  Similarity=0.360  Sum_probs=175.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .||++|||||++|||+++|++|+++|++|++++|+++.++++.+++.+.  +.++.++++|++|+++++++++++.++||
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            3799999999999999999999999999999999999999999999876  66899999999999999999999999999


Q ss_pred             CeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          108 PLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDT--MKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       108 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++|+||||||+..  ++.+.+.++|++.+++|+.++++++|+++|+  |.+     ++.|+||+++|..+..        
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~-----~~~g~Ii~i~S~~~~~--------  145 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLE-----RGTGRIVNIASTGGKQ--------  145 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHH-----HTEEEEEEECCGGGTS--------
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHh-----cCCccccccccccccc--------
Confidence            9999999999874  4678999999999999999999999999997  444     3568999999999876        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                             +.+....|+++|+|+.+|+|++|.|++++|  ||||+|+||+|+|+|.+..
T Consensus       146 -------~~~~~~~Y~asKaal~~ltk~lA~el~~~g--IrVN~I~PG~i~T~~~~~~  194 (257)
T d2rhca1         146 -------GVVHAAPYSASKHGVVGFTKALGLELARTG--ITVNAVCPGFVETPMAASV  194 (257)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSE--EEEEEEEECSBCSHHHHHH
T ss_pred             -------ccccchhHHHHHHHHHHHHHHHHHHhhhhC--cEEEEEeeCCCCCHHHHHH
Confidence                   566788999999999999999999999998  9999999999999987654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-44  Score=295.98  Aligned_cols=198  Identities=27%  Similarity=0.310  Sum_probs=179.4

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++...  +.++..+.||++|+++++.+++++.+
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~   80 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKA   80 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999876  66899999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|++|||||...  +..+.+.++|++++++|+.|+++++++++|.|.+     ++.|+||++||..+..       
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~-----~~~G~Iv~isS~~~~~-------  148 (244)
T d1yb1a_          81 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTK-----NNHGHIVTVASAAGHV-------  148 (244)
T ss_dssp             HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCEEEEEECCCC-CC-------
T ss_pred             HcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHh-----cCCceEEEeecchhcC-------
Confidence            9999999999999874  4566788999999999999999999999999998     5689999999999876       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCC-CcEEEEEeeCCceecCcccccCcc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDG-VNITANSLHPGSIVTNLFRYNGIL  244 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~-~~i~vn~v~PG~v~t~~~~~~~~~  244 (255)
                              +.++++.|++||+|+.+|+++|+.|+++.+ .+|+||+|+||+|+|++.+.....
T Consensus       149 --------~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~~~~  203 (244)
T d1yb1a_         149 --------SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPSTS  203 (244)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTHHH
T ss_pred             --------CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCcCcc
Confidence                    555778999999999999999999997742 239999999999999998765443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=100.00  E-value=2e-43  Score=295.65  Aligned_cols=193  Identities=26%  Similarity=0.329  Sum_probs=175.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc-hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++||++|||||++|||+++|++|+++|++|++++|+.+ .++++.+++.+.  +.++.++++|++|+++++++++++.+
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999865 567778888776  66899999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|+||||||+..  ++.+++.++|++.+++|+.++++++|+++|+|.++    +.+++||++||..+..       
T Consensus        82 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~----~~g~~Iv~isS~~~~~-------  150 (261)
T d1geea_          82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEN----DIKGTVINMSSVHEKI-------  150 (261)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT----TCCCEEEEECCGGGTS-------
T ss_pred             HhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccc----cccccccccccchhcc-------
Confidence            9999999999999874  46779999999999999999999999999999873    3345699999998776       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +.+....|+++|+|+.+|+|+++.|++++|  ||||+|+||+|+|++.+..
T Consensus       151 --------~~~~~~~Y~asKaal~~lt~~lA~e~~~~g--IrVN~I~PG~v~T~~~~~~  199 (261)
T d1geea_         151 --------PWPLFVHYAASKGGMKLMTETLALEYAPKG--IRVNNIGPGAINTPINAEK  199 (261)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBCSGGGHHH
T ss_pred             --------cCccccccccCCccchhhHHHHHHHhhhhC--cEEEEEeeCcCcCHhHhhh
Confidence                    566788999999999999999999999999  9999999999999997653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-44  Score=295.77  Aligned_cols=188  Identities=26%  Similarity=0.345  Sum_probs=170.5

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .+++||++|||||++|||+++|++|+++|++|++++|+++.++++.+++      .++.++.||++|+++++++++++.+
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~   75 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIR   75 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999988776665543      3578999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +||++|+||||||...   ++.+.+.++|++.+++|+.++++++|+++|+|+++      +|+||++||..+..      
T Consensus        76 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~------~G~Ii~isS~~~~~------  143 (250)
T d1ydea1          76 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS------QGNVINISSLVGAI------  143 (250)
T ss_dssp             HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------TCEEEEECCHHHHH------
T ss_pred             hcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC------CCCCcccccccccc------
Confidence            9999999999999653   34578999999999999999999999999999862      58999999999877      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.+....|+++|+|+.+|+|++|.|++++|  ||||+|+||+|+|++++..
T Consensus       144 ---------~~~~~~~Y~asKaal~~lt~~lA~e~a~~g--IrVN~I~PG~i~T~~~~~~  192 (250)
T d1ydea1         144 ---------GQAQAVPYVATKGAVTAMTKALALDESPYG--VRVNCISPGNIWTPLWEEL  192 (250)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECSBCCHHHHHH
T ss_pred             ---------cccCcchhHHHHhhHHHHHHHHHHHhcccC--eEEEEEeeCCCCChhHHHH
Confidence                     556778999999999999999999999999  9999999999999987754

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=100.00  E-value=2.4e-43  Score=293.75  Aligned_cols=193  Identities=27%  Similarity=0.306  Sum_probs=174.3

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .++||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++..   +.++.++++|++|+++++++++++.++
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999988888887743   457999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  ++.+.+.++|++++++|+.++++++|+++|+|+++    +.+|+||++||..+..        
T Consensus        80 ~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~----~~gg~Ii~isS~~~~~--------  147 (251)
T d1zk4a1          80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNK----GLGASIINMSSIEGFV--------  147 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS----SSCEEEEEECCGGGTS--------
T ss_pred             hCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhc----CCCCceEeeeccceec--------
Confidence            999999999999874  56789999999999999999999999999999862    3346999999999876        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHH--hhCCCcEEEEEeeCCceecCcccccC
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHL--KEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~--~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                             +.+....|+++|+|+.+|+|++|.|+  .++|  ||||+|+||+|+|++.+...
T Consensus       148 -------~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~g--IrVN~I~PG~i~T~~~~~~~  199 (251)
T d1zk4a1         148 -------GDPSLGAYNASKGAVRIMSKSAALDCALKDYD--VRVNTVHPGYIKTPLVDDLP  199 (251)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCS--EEEEEEEECCBCCHHHHTST
T ss_pred             -------cCCCchhHHHHHHHHhcchHHHHHHHhcCCCc--EEEEEEeCCCCCChhHHhcC
Confidence                   55677899999999999999999984  5667  99999999999999987654

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=100.00  E-value=1.9e-43  Score=293.07  Aligned_cols=190  Identities=27%  Similarity=0.316  Sum_probs=173.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEE-eccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAV-RNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +++|||||++|||+++|++|+++|++|++++ |+.+.++++.+++.+.  +.++.++++|++|+++++++++++.+++|+
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            6899999999999999999999999999875 5666778888888776  668999999999999999999999999999


Q ss_pred             eeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          109 LNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       109 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +|+||||||...  ++.+.+.++|++.+++|+.++++++|+++|+|++     ++.|+||++||.++..           
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~-----~~~G~IVnisS~~~~~-----------  143 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMK-----KRKGRIINIASVVGLI-----------  143 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCTHHHH-----------
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHH-----cCCcEEEEEcChhhcC-----------
Confidence            999999999774  4678999999999999999999999999999987     4679999999999887           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                          +.++...|+++|+|+.+|+|+++.|++++|  ||||+|+||+++|++.+....
T Consensus       144 ----~~~~~~~Y~asKaal~~ltk~lA~el~~~g--IrvN~I~PG~i~T~~~~~~~~  194 (244)
T d1edoa_         144 ----GNIGQANYAAAKAGVIGFSKTAAREGASRN--INVNVVCPGFIASDMTAKLGE  194 (244)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTT--EEEEEEEECSBCSHHHHTTCH
T ss_pred             ----CCCCCHHHHHHHHHHHHChHHHHHHHhhhC--cEEEEEecceeccHHHHHhhH
Confidence                556788999999999999999999999999  999999999999999887654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.8e-43  Score=290.95  Aligned_cols=189  Identities=24%  Similarity=0.290  Sum_probs=168.5

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |+++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++       +..++.||++|+++++++++++.+
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~   73 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALA   73 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999988777665543       467899999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|+||||||+..  ++.+.+.++|++.+++|+.++++++|+++|+|.+     ++.+.++++||.. ..       
T Consensus        74 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~-----~~~~~i~~~ss~~-~~-------  140 (242)
T d1ulsa_          74 HLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMRE-----KNPGSIVLTASRV-YL-------  140 (242)
T ss_dssp             HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TCCEEEEEECCGG-GG-------
T ss_pred             hcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccc-----cccceeeeecccc-cc-------
Confidence            9999999999999874  4568999999999999999999999999999987     5567777777743 33       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                              +.++..+|+++|+|+.+|+|++|.|++++|  ||||+|+||+++|++.+....
T Consensus       141 --------~~~~~~~Y~asKaal~~ltk~lA~ela~~g--IrVN~I~PG~v~T~~~~~~~~  191 (242)
T d1ulsa_         141 --------GNLGQANYAASMAGVVGLTRTLALELGRWG--IRVNTLAPGFIETRMTAKVPE  191 (242)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCTTTSSSCH
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHHhhhC--cEEEEEeeCcccChhhhcCCH
Confidence                    455778999999999999999999999999  999999999999999876543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=100.00  E-value=2.3e-43  Score=294.05  Aligned_cols=190  Identities=26%  Similarity=0.341  Sum_probs=174.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .++||++|||||++|||+++|++|+++|++|++++|+++.++++.+++     +.+..++++|++|+++++++++++.++
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999998888887776     557889999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  ++.+.+.++|++.+++|+.++++++|+++|+|++      ++|+||++||..+..        
T Consensus        78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~------~~G~Iv~isS~~~~~--------  143 (253)
T d1hxha_          78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE------TGGSIINMASVSSWL--------  143 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT------TCEEEEEECCGGGTS--------
T ss_pred             hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh------cCCceecccchhhhc--------
Confidence            999999999999874  4678899999999999999999999999999964      469999999999876        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                             +.+...+|+++|+|+.+|+|++|.|++++|.+||||+|+||+|+|++++..
T Consensus       144 -------~~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~  194 (253)
T d1hxha_         144 -------PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQAS  194 (253)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHH
T ss_pred             -------CccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhh
Confidence                   566788999999999999999999999866669999999999999987643

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.3e-43  Score=291.00  Aligned_cols=185  Identities=28%  Similarity=0.299  Sum_probs=167.6

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .++||++|||||++|||+++|++|+++|++|++++|+++. .+..+++       ...++++|++|+++++++++++.++
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~-~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~   73 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI-------GGAFFQVDLEDERERVRFVEEAAYA   73 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHH-------TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH-HHHHHHc-------CCeEEEEeCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999999765 3344433       2457899999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  ++.+.+.++|++.+++|+.++++++|+++|+|++     ++.|+||++||..+..        
T Consensus        74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~-----~~~G~Ii~isS~~~~~--------  140 (248)
T d2d1ya1          74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRK-----VGGGAIVNVASVQGLF--------  140 (248)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-----TTCEEEEEECCGGGTS--------
T ss_pred             cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccc-----cccccccccccccccc--------
Confidence            999999999999774  5678999999999999999999999999999987     5679999999999876        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                             +.+....|+++|+|+.+|+|+++.|++++|  ||||+|+||+++|++.+.
T Consensus       141 -------~~~~~~~Y~asKaal~~ltk~lA~el~~~g--IrVN~I~PG~v~T~~~~~  188 (248)
T d2d1ya1         141 -------AEQENAAYNASKGGLVNLTRSLALDLAPLR--IRVNAVAPGAIATEAVLE  188 (248)
T ss_dssp             -------BCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHH
T ss_pred             -------cccccchhHHHHHHHHHHHHHHHHHhhhhC--cEEEEEeeCCCCCchHHH
Confidence                   556788999999999999999999999999  999999999999998764

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.8e-43  Score=290.01  Aligned_cols=185  Identities=25%  Similarity=0.350  Sum_probs=165.0

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .++++||++|||||++|||+++|++|+++|++|++++|+.+.             ..++..+++|++|+++++++++++.
T Consensus         2 ~psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~   68 (237)
T d1uzma1           2 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA-------------PKGLFGVEVDVTDSDAVDRAFTAVE   68 (237)
T ss_dssp             CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC-------------CTTSEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch-------------hcCceEEEEecCCHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999999765             3467889999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +++|++|+||||||+..  ++.+.+.++|++++++|+.++++++|+++|+|.+     ++.|+||++||..+..      
T Consensus        69 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-----~~~g~Iv~isS~~~~~------  137 (237)
T d1uzma1          69 EHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQR-----NKFGRMIFIGSVSGLW------  137 (237)
T ss_dssp             HHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCC--------
T ss_pred             HhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccc-----cCCCceEEEcchhhcc------
Confidence            99999999999999874  4678899999999999999999999999999998     6788999999999876      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                               +.++...|+++|+|+.+|+|+++.|+.++|  ||||+|+||+++|++.+..+.
T Consensus       138 ---------~~~~~~~Y~asKaal~~lt~~lA~e~~~~g--IrVN~I~PG~v~T~~~~~~~~  188 (237)
T d1uzma1         138 ---------GIGNQANYAASKAGVIGMARSIARELSKAN--VTANVVAPGYIDTDMTRALDE  188 (237)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCHHHHHSCH
T ss_pred             ---------CCcccHHHHHHHHHHHHHHHHHHhhhhcCC--ceeeeeeeCcCCChhhhccCH
Confidence                     555778999999999999999999999999  999999999999999876543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=100.00  E-value=1.3e-42  Score=291.97  Aligned_cols=191  Identities=24%  Similarity=0.300  Sum_probs=172.8

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++..   ...+.++.||++|+++++++++++.++
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999988888854   346888999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          106 GRPLNILINNAGIMA----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       106 ~g~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +|++|++|||||...    ...+.+.++|++++++|+.++++++|+++|+|.+     ++.|+||++||..+...     
T Consensus        80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~-----~~~g~ii~iss~~~~~~-----  149 (268)
T d2bgka1          80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIP-----AKKGSIVFTASISSFTA-----  149 (268)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGG-----GTCEEEEEECCGGGTCC-----
T ss_pred             cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhh-----cCCCCcccccccccccc-----
Confidence            999999999999763    2457889999999999999999999999999987     56799999999987762     


Q ss_pred             cCCCCCcccCCCC-ccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNS-FGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~-~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                ..+ ...|+++|+|+.+|+|++|.|++++|  ||||+|+||+++|++....
T Consensus       150 ----------~~~~~~~Y~asKaal~~lt~~lA~el~~~g--IrVN~I~PG~i~T~~~~~~  198 (268)
T d2bgka1         150 ----------GEGVSHVYTATKHAVLGLTTSLCTELGEYG--IRVNCVSPYIVASPLLTDV  198 (268)
T ss_dssp             ----------CTTSCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCSCCCCTTS
T ss_pred             ----------ccccccccchhHHHHHhCHHHHHHHhChhC--eEEEecCCCCccChHHhhh
Confidence                      223 34799999999999999999999999  9999999999999998754

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=100.00  E-value=3.7e-42  Score=287.51  Aligned_cols=193  Identities=29%  Similarity=0.307  Sum_probs=174.3

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++...  +..+.++.+|++++++++++++++.+
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~--~~~~~~~~~D~s~~~~~~~~~~~~~~   79 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVAH   79 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeecCCHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999876  66889999999999999999999999


Q ss_pred             CC-CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          105 QG-RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       105 ~~-g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      ++ +.+|+||||||...  ++.+.+.++|.+++++|+.++++++|++.|+|.+     +..|+||++||..+..      
T Consensus        80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~-----~~~g~ii~isS~~~~~------  148 (258)
T d1ae1a_          80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKA-----SQNGNVIFLSSIAGFS------  148 (258)
T ss_dssp             HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTSEEEEEECCGGGTS------
T ss_pred             HhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccc-----cccccccccccccccc------
Confidence            98 67999999999874  4677899999999999999999999999999998     5689999999999876      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                               +.+....|+++|+|+++|+|.+|.|++++|  ||||+|+||+++|++.+..
T Consensus       149 ---------~~~~~~~Y~~sK~al~~lt~~lA~el~~~g--IrvN~I~PG~i~T~~~~~~  197 (258)
T d1ae1a_         149 ---------ALPSVSLYSASKGAINQMTKSLACEWAKDN--IRVNSVAPGVILTPLVETA  197 (258)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBC-------
T ss_pred             ---------ccccchhHHHHHHHHHHHHHHHHHhcCcCc--EEEEEEeeCcccCcchhhh
Confidence                     566788999999999999999999999999  9999999999999987654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-42  Score=290.98  Aligned_cols=195  Identities=28%  Similarity=0.314  Sum_probs=166.6

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhC-CCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-PSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.. +..++.++++|++|+++++++++++.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999998763 235799999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc-cccc
Q 025275          105 QGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH-RFAY  177 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~-~~~~  177 (255)
                      ++|++|+||||||...      +..+.+.++|++.+++|+.++++++|+++|+|+++      .|++|+++|..+ ..  
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~------~g~iI~~~S~~~~~~--  153 (264)
T d1spxa_          82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST------KGEIVNISSIASGLH--  153 (264)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------TCEEEEECCTTSSSS--
T ss_pred             HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc------cCcceeeeeeccccc--
Confidence            9999999999999752      23456889999999999999999999999999872      467777777653 43  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                                   +.+....|+++|+|+.+|+|+++.|++++|  ||||+|+||+|+|++......
T Consensus       154 -------------~~~~~~~Y~asKaal~~lt~~lA~el~~~g--IrVN~V~PG~v~T~~~~~~~~  204 (264)
T d1spxa_         154 -------------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHG--IRVNSISPGLVATGFGSAMGM  204 (264)
T ss_dssp             -------------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCBCCCC------
T ss_pred             -------------cCCCchhhhhhhhhHHHHHHHHHHHhcccC--eEEEEEeeCCCCCcchhccCC
Confidence                         555778899999999999999999999999  999999999999999876544

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=100.00  E-value=3e-42  Score=288.55  Aligned_cols=207  Identities=27%  Similarity=0.294  Sum_probs=179.9

Q ss_pred             ccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ...|+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+.. +.++.++++|++|++++++++++
T Consensus         2 ~~~m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~   80 (260)
T d1h5qa_           2 GFTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQ   80 (260)
T ss_dssp             CEEECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999988886654 56799999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.+++|++|+||||||...  ++.+.+.++|++.+++|+.++++++|++.|+|.++    ...++|++++|.........
T Consensus        81 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~----~~~g~i~~~~s~~~~~~~~~  156 (260)
T d1h5qa_          81 IDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQK----QQKGSIVVTSSMSSQIINQS  156 (260)
T ss_dssp             HHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TCCEEEEEECCGGGTSCCEE
T ss_pred             HHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhccccccc----ccceEEEEeecccccccccc
Confidence            9999999999999999763  46779999999999999999999999999998653    45778888888765432111


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                              ...+.++...|+++|+|+.+|+|+++.|++++|  ||||+|+||+|+|++......
T Consensus       157 --------~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~g--IrvN~I~PG~i~T~~~~~~~~  210 (260)
T d1h5qa_         157 --------SLNGSLTQVFYNSSKAACSNLVKGLAAEWASAG--IRVNALSPGYVNTDQTAHMDK  210 (260)
T ss_dssp             --------ETTEECSCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCGGGGGSCH
T ss_pred             --------ccccCccccchhhhhhhHHHHHHHHHHHhchhC--eEEeecCCCcccCcchhccCH
Confidence                    011334567899999999999999999999999  999999999999999877643

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.4e-42  Score=292.45  Aligned_cols=196  Identities=27%  Similarity=0.268  Sum_probs=172.9

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhC-CCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-PSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ++++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.. ++.++.+++||++|+++++++++++.
T Consensus         1 prL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   80 (272)
T d1xkqa_           1 PRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL   80 (272)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999998753 24579999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCCC--C----CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCC-ccccc
Q 025275          104 SQGRPLNILINNAGIMAS--P----FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSE-AHRFA  176 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~--~----~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~-~~~~~  176 (255)
                      +++|++|++|||||...+  +    .+.+.++|.+++++|+.++++++|+++|+|+++      +|++|+++|. ++.. 
T Consensus        81 ~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~------~g~iI~~~Ss~a~~~-  153 (272)
T d1xkqa_          81 KQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS------KGEIVNVSSIVAGPQ-  153 (272)
T ss_dssp             HHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------TCEEEEECCGGGSSS-
T ss_pred             HHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc------CCccccccchhcccc-
Confidence            999999999999998642  2    346677899999999999999999999999862      4566666664 4444 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                                    +.+....|+++|+|+.+|+|++|.|++++|  ||||+|+||+|+|+|.+....
T Consensus       154 --------------~~~~~~~Y~asKaal~~ltk~lA~el~~~g--IrVN~I~PG~i~T~~~~~~~~  204 (272)
T d1xkqa_         154 --------------AQPDFLYYAIAKAALDQYTRSTAIDLAKFG--IRVNSVSPGMVETGFTNAMGM  204 (272)
T ss_dssp             --------------CCCSSHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEEECCBCSSHHHHTTC
T ss_pred             --------------CCCCcchhhhHHHHHHHHHHHHHHHhcccC--eEEEEEeeCCCcchhhhccCC
Confidence                          556788999999999999999999999999  999999999999999876543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-42  Score=289.73  Aligned_cols=191  Identities=29%  Similarity=0.348  Sum_probs=173.3

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+..++.++.++++|++|+++++++++++.+++
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            47999999999999999999999999999999999999999999999877667789999999999999999999999999


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      |++|+||||||...      .++|++.+++|+.++++++++++|+|.++..  +.+|+||++||.++..           
T Consensus        81 G~iDilVnnAg~~~------~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~--~~~g~Iv~isS~~~~~-----------  141 (254)
T d2gdza1          81 GRLDILVNNAGVNN------EKNWEKTLQINLVSVISGTYLGLDYMSKQNG--GEGGIIINMSSLAGLM-----------  141 (254)
T ss_dssp             SCCCEEEECCCCCC------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGT--CCCEEEEEECCGGGTS-----------
T ss_pred             CCcCeecccccccc------cccchheeeeehhhHHHHHHHHHHHHHHhhc--CCCcEEEeeccHhhcc-----------
Confidence            99999999999743      3568999999999999999999999986422  4568999999999876           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHH--HHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKE--LAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~--la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                          +.+....|+++|+|+.+|+|+  |+.|++++|  ||||+|+||+|+|+|++...
T Consensus       142 ----~~~~~~~Y~asKaal~~ltrs~ala~e~~~~g--IrVN~I~PG~i~T~~~~~~~  193 (254)
T d2gdza1         142 ----PVAQQPVYCASKHGIVGFTRSAALAANLMNSG--VRLNAICPGFVNTAILESIE  193 (254)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCC--EEEEEEEESCBSSHHHHGGG
T ss_pred             ----CCCCccchHHHHHHHHHHHHHHHHHHHhcCCC--EEEEEEEcCCCCChhhhhcc
Confidence                666788999999999999997  678999998  99999999999999987653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.1e-42  Score=290.52  Aligned_cols=195  Identities=23%  Similarity=0.266  Sum_probs=175.3

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... ..++.++.+|++|+++++++++++.+
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999987632 35789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--C--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccC
Q 025275          105 QGRPLNILINNAGIMA--S--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG  180 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~  180 (255)
                      +||++|++|||||...  +  ..+.+.++|++.+++|+.++++++|+++|+|.+     +++|+|+++||.++..     
T Consensus        81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-----~~~g~ii~~ss~~~~~-----  150 (274)
T d1xhla_          81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-----TKGEIVNVSSIVAGPQ-----  150 (274)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----TTCEEEEECCGGGSSS-----
T ss_pred             HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc-----cccccccchhhhhccc-----
Confidence            9999999999999652  2  234678899999999999999999999999987     5678888888877665     


Q ss_pred             ccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          181 IRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       181 ~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                +.++...|+++|+|+.+|+|++|.|++++|  ||||+|+||+|+|++.....
T Consensus       151 ----------~~~~~~~Y~asKaal~~ltk~lA~ela~~g--IrVN~I~PG~i~T~~~~~~~  200 (274)
T d1xhla_         151 ----------AHSGYPYYACAKAALDQYTRCTAIDLIQHG--VRVNSVSPGAVATGFMGAMG  200 (274)
T ss_dssp             ----------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCBCSSHHHHTT
T ss_pred             ----------cCCCCceehhhhhHHHHHHHHHHHHHhHhC--CceeeeccCCCcCchhhhhc
Confidence                      555778999999999999999999999999  99999999999999877654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-41  Score=284.69  Aligned_cols=200  Identities=24%  Similarity=0.254  Sum_probs=178.8

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++||++|||||++|||+++|++|+++|++|++++|++++++++.+++++..+..++.+++||++++++++++++++.++
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999998765678999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|+||||||...  ++.+.+.++|++.+++|+.++++++++++|++.++.   ..+|+||++||.++....      
T Consensus        87 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~---~~~g~Ii~isS~~~~~~~------  157 (257)
T d1xg5a_          87 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERN---VDDGHIININSMSGHRVL------  157 (257)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---CCSCEEEEECCGGGTSCC------
T ss_pred             cCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhc---cCCCceEEEechHhcCCC------
Confidence            999999999999764  467899999999999999999999999999998631   246899999999876421      


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHH--hhCCCcEEEEEeeCCceecCcccccCc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHL--KEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~--~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                             |......|+++|+|+.+|+|+++.|+  .+.|  ||||+|+||+++|++......
T Consensus       158 -------p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~--I~vn~i~PG~i~t~~~~~~~~  210 (257)
T d1xg5a_         158 -------PLSVTHFYSATKYAVTALTEGLRQELREAQTH--IRATCISPGVVETQFAFKLHD  210 (257)
T ss_dssp             -------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCC--CEEEEEEESCBCSSHHHHHTT
T ss_pred             -------CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCC--EEEEEEeCCCCCChhhhhcCh
Confidence                   33456779999999999999999998  4555  999999999999998776544

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-41  Score=280.93  Aligned_cols=187  Identities=24%  Similarity=0.380  Sum_probs=165.5

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++      ..+.++.+|++|++++++++    +
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~----~   70 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKAL----G   70 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHH----T
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHH----H
Confidence            5789999999999999999999999999999999999988776665543      25788999999999887665    4


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|+||||||...  ++.+.+.++|++.+++|+.++++++|++.|.+.++    ..+|+||+++|..+..       
T Consensus        71 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~----~~~g~ii~isS~~~~~-------  139 (242)
T d1cyda_          71 GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINR----GVPGSIVNVSSMVAHV-------  139 (242)
T ss_dssp             TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TCCEEEEEECCGGGTS-------
T ss_pred             HcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhh----cccCcccccchhhccc-------
Confidence            5799999999999763  56789999999999999999999999999987642    4578999999998766       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                              +.+....|+++|+|+.+|+|+++.|++++|  ||||+|+||+++|++.+...
T Consensus       140 --------~~~~~~~Y~asKaal~~lt~~lA~e~~~~g--IrvN~I~PG~i~T~~~~~~~  189 (242)
T d1cyda_         140 --------TFPNLITYSSTKGAMTMLTKAMAMELGPHK--IRVNSVNPTVVLTDMGKKVS  189 (242)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBTTHHHHHHT
T ss_pred             --------cCCccccccchHHHHHHHHHHHHHHhCccC--eecccCCCCCccCHHHHhhc
Confidence                    556788999999999999999999999999  99999999999999987654

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=100.00  E-value=1.6e-41  Score=282.99  Aligned_cols=193  Identities=28%  Similarity=0.324  Sum_probs=171.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCC-CHHHHHHHHHHHh
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS-SLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~si~~~~~~~~  103 (255)
                      |+++||++|||||++|||+++|++|+++|++|++++|+.++.+.. ++++...++.++.++.+|++ +.++++++++++.
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL-AELKAINPKVNITFHTYDVTVPVAESKKLLKKIF   79 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH-HHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH-HHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999998875544 55566666778999999998 6678999999999


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +++|+||+||||||.      .+.+.|++++++|+.|+++++++++|+|.++..  +.+|+||++||..+..        
T Consensus        80 ~~~g~iDilvnnAG~------~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~--~~~g~Ii~isS~~~~~--------  143 (254)
T d1sbya1          80 DQLKTVDILINGAGI------LDDHQIERTIAINFTGLVNTTTAILDFWDKRKG--GPGGIIANICSVTGFN--------  143 (254)
T ss_dssp             HHHSCCCEEEECCCC------CCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGT--CCCEEEEEECCGGGTS--------
T ss_pred             HHcCCCCEEEeCCCC------CCHHHHHHHHHHHhHHHHHHHHHHHHHhhhccc--CCCceEEEEechhhcc--------
Confidence            999999999999996      456789999999999999999999999976422  4578999999999876        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                             +.+++..|+++|+|+.+|+++|+.++.+.|  ||||+|+||+|+|++.+.+..
T Consensus       144 -------~~~~~~~Y~asKaal~~~t~~la~el~~~g--IrVn~I~PG~v~T~~~~~~~~  194 (254)
T d1sbya1         144 -------AIHQVPVYSASKAAVVSFTNSLAKLAPITG--VTAYSINPGITRTPLVHTFNS  194 (254)
T ss_dssp             -------CCTTSHHHHHHHHHHHHHHHHHHHHHHHHS--EEEEEEEECSEESHHHHSCCC
T ss_pred             -------CCCCCHHHHHHHHHHHHHHHHHHhhccccC--eEEEEEEeCCCcCcccccccc
Confidence                   666888999999999999999999999998  999999999999998876644

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-41  Score=279.87  Aligned_cols=188  Identities=22%  Similarity=0.300  Sum_probs=166.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .+.++||++|||||++|||+++|++|+++|++|++++|++++++++.+++      ..+..+.+|++|++++++++    
T Consensus         2 ~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~----   71 (244)
T d1pr9a_           2 ELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERAL----   71 (244)
T ss_dssp             CCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHH----
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHH----
Confidence            46789999999999999999999999999999999999988877766553      24788999999999887766    


Q ss_pred             cCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +++|++|+||||||...  ++.+.+.++|++.+++|+.++++++|+++|.+.++    .+.|+||++||..+..      
T Consensus        72 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~----~~~g~Ii~isS~~~~~------  141 (244)
T d1pr9a_          72 GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIAR----GVPGAIVNVSSQCSQR------  141 (244)
T ss_dssp             TTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----TCCEEEEEECCGGGTS------
T ss_pred             HHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHh----CCcceEeecccccccc------
Confidence            45799999999999874  46778999999999999999999999999976542    4679999999999876      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                               +.+....|+++|+|+.+|+|++|.|++++|  ||||+|+||+|+|++.+...
T Consensus       142 ---------~~~~~~~Y~asKaal~~lt~~lA~el~~~g--IrvN~I~PG~v~T~~~~~~~  191 (244)
T d1pr9a_         142 ---------AVTNHSVYCSTKGALDMLTKVMALELGPHK--IRVNAVNPTVVMTSMGQATW  191 (244)
T ss_dssp             ---------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCSHHHHTTS
T ss_pred             ---------cccchhhhhhhHHHHHHHHHHHHHHhCCCc--EEEEEEeeCcCcChHHhhhc
Confidence                     556778999999999999999999999998  99999999999999876543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-41  Score=287.69  Aligned_cols=193  Identities=23%  Similarity=0.283  Sum_probs=174.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC---CCceEEEEeCCCCHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP---SAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      -.|+||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+..+   +.++.+++||++|++++++++++
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~   87 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   87 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence            348999999999999999999999999999999999999999999999986532   56899999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.+++|++|+||||||...  ++.+.+.++|++.+++|+.++++++|+++|.|.+     ++.|+||++||.. ..    
T Consensus        88 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~-----~~~g~Ii~~ss~~-~~----  157 (297)
T d1yxma1          88 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMK-----EHGGSIVNIIVPT-KA----  157 (297)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHH-----HHCEEEEEECCCC-TT----
T ss_pred             HHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcc-----ccccccccccccc-cc----
Confidence            9999999999999999763  5677899999999999999999999999999987     4578899887643 22    


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                                 +.+....|+++|+|+.+|+|++|.|++++|  ||||+|+||+|+|++...
T Consensus       158 -----------~~~~~~~Y~asKaal~~ltk~lA~el~~~g--IrVN~I~PG~i~T~~~~~  205 (297)
T d1yxma1         158 -----------GFPLAVHSGAARAGVYNLTKSLALEWACSG--IRINCVAPGVIYSQTAVE  205 (297)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEEECSBCCTGGGT
T ss_pred             -----------cccccccchhHHHHHHHHHHHHHHHhcccC--ceEEEeeeCcCcCcchhh
Confidence                       445678999999999999999999999999  999999999999998753

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=100.00  E-value=3.6e-41  Score=284.25  Aligned_cols=188  Identities=21%  Similarity=0.224  Sum_probs=167.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |+|+||++|||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++..+.+|++++++++++++++.+
T Consensus         1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~   75 (276)
T d1bdba_           1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH-----GDNVLGIVGDVRSLEDQKQAASRCVA   75 (276)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeeEEecccccHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999988887776665     45789999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCCC-------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          105 QGRPLNILINNAGIMAS-------PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~-------~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      ++|++|++|||||+...       +.+.+.+.|++++++|+.++++++|+++|+|+++      +|+||+++|..+..  
T Consensus        76 ~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~------~g~iI~i~S~~~~~--  147 (276)
T d1bdba_          76 RFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVAS------RGNVIFTISNAGFY--  147 (276)
T ss_dssp             HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------TCEEEEECCGGGTS--
T ss_pred             HhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhc------CCCceeeeechhcc--
Confidence            99999999999997632       2334456799999999999999999999999862      58999999988776  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                   +.+..+.|+++|+|+.+|+|++|.|+++ +  ||||+|+||+|+|++....
T Consensus       148 -------------~~~~~~~Y~asKaal~~ltr~lA~ela~-~--IrVN~I~PG~i~T~~~~~~  195 (276)
T d1bdba_         148 -------------PNGGGPLYTAAKHAIVGLVRELAFELAP-Y--VRVNGVGSGGINSDLRGPS  195 (276)
T ss_dssp             -------------TTSSCHHHHHHHHHHHHHHHHHHHHHTT-T--CEEEEEEECCCCSCCCCCG
T ss_pred             -------------CCCCCchHHHHHHHHHHHHHHHHHHhhc-c--eEEcccCCCCEecCcCCcc
Confidence                         5567789999999999999999999985 5  9999999999999986543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.9e-40  Score=281.69  Aligned_cols=192  Identities=23%  Similarity=0.257  Sum_probs=169.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc---------chHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM---------AAGKDVREAIVKEIPSAKVDAMELDVSSLAS   94 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s   94 (255)
                      .|+++||++|||||++|||+++|++|+++|++|++++|+.         +.+++..+++...     .....+|++|.++
T Consensus         2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~   76 (302)
T d1gz6a_           2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR-----GGKAVANYDSVEA   76 (302)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT-----TCEEEEECCCGGG
T ss_pred             CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhc-----ccccccccchHHH
Confidence            3679999999999999999999999999999999997653         3455666666543     3467789999999


Q ss_pred             HHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           95 VRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        95 i~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ++++++++.+++|++|+||||||+..  ++.+++.++|++++++|+.|+++++|+++|+|++     ++.|+||++||..
T Consensus        77 ~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~-----~~~G~IV~isS~~  151 (302)
T d1gz6a_          77 GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKK-----QNYGRIIMTASAS  151 (302)
T ss_dssp             HHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTCEEEEEECCHH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHh-----CCCcEEEEeCChh
Confidence            99999999999999999999999874  4678999999999999999999999999999998     4579999999999


Q ss_pred             cccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          173 HRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      +..               +.++...|+++|+|+.+|+|+++.|++++|  ||||+|+||++.|++.....
T Consensus       152 ~~~---------------~~~~~~~Y~asKaal~~lt~~la~E~~~~g--IrVN~I~PG~~~t~~~~~~~  204 (302)
T d1gz6a_         152 GIY---------------GNFGQANYSAAKLGLLGLANTLVIEGRKNN--IHCNTIAPNAGSRMTETVMP  204 (302)
T ss_dssp             HHH---------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEEEECCSTTTGGGSC
T ss_pred             hcC---------------CCCCcHHHHHHHHHHHHHHHHHHHHHhccC--CceeeeCCCCCCcchhhcCc
Confidence            887               556789999999999999999999999999  99999999999988765443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=100.00  E-value=2.5e-40  Score=276.75  Aligned_cols=191  Identities=26%  Similarity=0.349  Sum_probs=169.5

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec-cchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN-MAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .|+||+||||||++|||+++|++|+++|++|++++++ .+.++++.+++.+.  +.++..+++|++|+++++++++++.+
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHc--CCCceEecCCCCCHHHHHHHHHHHHH
Confidence            4889999999999999999999999999999987655 44567777778776  66899999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      ++|++|++|||||...  +..+.+.++|++.+++|+.++++++|+++|+|++       .+++++++|..+...      
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~-------~g~~iii~s~~~~~~------  147 (259)
T d1ja9a_          81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRR-------GGRIILTSSIAAVMT------  147 (259)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEE-------EEEEEEECCGGGTCC------
T ss_pred             HcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhc-------CCccccccccccccc------
Confidence            9999999999999874  4567899999999999999999999999999965       468888888765442      


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              +.+.+..|+++|+|+.+|+|+++.|++++|  ||||+|+||+++|++++..
T Consensus       148 --------~~~~~~~Y~asK~al~~l~r~lA~e~~~~g--IrvN~I~PG~i~T~~~~~~  196 (259)
T d1ja9a_         148 --------GIPNHALYAGSKAAVEGFCRAFAVDCGAKG--VTVNCIAPGGVKTDMFDEN  196 (259)
T ss_dssp             --------SCCSCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCBSSHHHHHH
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHHHhhcC--eEEeccCcCCccChhhhhh
Confidence                    456778999999999999999999999998  9999999999999987654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.6e-40  Score=274.55  Aligned_cols=193  Identities=23%  Similarity=0.281  Sum_probs=172.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHH---cCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLAL---RGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~---~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .|+||++|||||++|||+++|++|++   +|++|++++|+.++++++.+++....++.++.+++||++++++++++++++
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~   82 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence            58899999999999999999999986   799999999999999999999998877889999999999999999999988


Q ss_pred             hcC----CCCeeEEEEccCCCC-----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275          103 NSQ----GRPLNILINNAGIMA-----SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus       103 ~~~----~g~id~lv~~ag~~~-----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                      .+.    ++.+|++|||||...     +..+.+.++|++++++|+.++++++|+++|+|+++   .+..|+||++||..+
T Consensus        83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~---~~~~g~Iv~isS~~~  159 (259)
T d1oaaa_          83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDS---PGLSKTVVNISSLCA  159 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCC---TTCEEEEEEECCGGG
T ss_pred             HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhc---CCCcccccccccccc
Confidence            763    467999999999753     24568889999999999999999999999999862   123579999999998


Q ss_pred             ccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          174 RFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                      ..               +.+++..|++||+|+.+|+|+|+.|  ..|  ||||+|+||+|+|+|.+.
T Consensus       160 ~~---------------~~~~~~~Y~asKaal~~lt~~la~e--~~g--IrVn~v~PG~i~T~~~~~  207 (259)
T d1oaaa_         160 LQ---------------PYKGWGLYCAGKAARDMLYQVLAAE--EPS--VRVLSYAPGPLDNDMQQL  207 (259)
T ss_dssp             TS---------------CCTTCHHHHHHHHHHHHHHHHHHHH--CTT--EEEEEEECCSBSSHHHHH
T ss_pred             cC---------------CCccchHHHHHHHHHHHHHHHHHhC--CCC--CEEEEEEcCCCCCHHHHH
Confidence            76               6667899999999999999999998  456  999999999999998764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=100.00  E-value=1.2e-40  Score=275.66  Aligned_cols=187  Identities=26%  Similarity=0.268  Sum_probs=161.7

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++.++++|++++++++++++++.++
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dls~~~~i~~~~~~i~~~   76 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAVEAVFAEALEE   76 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999987766555443     568899999999999999999999999


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +|++|++|||||...  ++.+.+.++|.+++++|+.++++++|+++|++.+       .+.|+++||.+..         
T Consensus        77 ~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~-------~~~i~~~ss~a~~---------  140 (241)
T d2a4ka1          77 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEE-------GGSLVLTGSVAGL---------  140 (241)
T ss_dssp             HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCT-------TCEEEEECCCTTC---------
T ss_pred             hCCccEeccccccccccchhhhhcccccccccccccccccccccccccccc-------ccceeeccccccc---------
Confidence            999999999998763  5678999999999999999999999999998864       4566666665533         


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                             +.+++..|+++|+|+++|+|+++.|++++|  ||||+|+||+++|++.+...
T Consensus       141 -------~~~~~~~Y~~sK~al~~lt~~lA~el~~~g--IrvN~I~PG~v~T~~~~~~~  190 (241)
T d2a4ka1         141 -------GAFGLAHYAAGKLGVVGLARTLALELARKG--VRVNVLLPGLIQTPMTAGLP  190 (241)
T ss_dssp             -------CHHHHHHHHHCSSHHHHHHHHHHHHHTTTT--CEEEEEEECSBCCGGGTTSC
T ss_pred             -------cccCccccchhhHHHHHHHHHHHHHHhHhC--CEEeeeccCcCCCHHHHhhh
Confidence                   234677899999999999999999999999  99999999999999987544

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.7e-40  Score=275.18  Aligned_cols=193  Identities=16%  Similarity=0.156  Sum_probs=162.9

Q ss_pred             cCCCCCCcEEEEecCCC--chHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~--giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      +.++++||++|||||+|  |||+++|++|+++|++|++++|+++..+ ..+++...  ..+..++++|++|+++++++++
T Consensus         2 ~~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~-~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~   78 (256)
T d1ulua_           2 LTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRP-EAEKLAEA--LGGALLFRADVTQDEELDALFA   78 (256)
T ss_dssp             EEECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHHHHH--TTCCEEEECCTTCHHHHHHHHH
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHH-HHHHhhhc--cCcccccccccCCHHHHHHHHH
Confidence            45689999999999987  9999999999999999999999865444 44455444  4467889999999999999999


Q ss_pred             HHhcCCCCeeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccc
Q 025275          101 EYNSQGRPLNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHR  174 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~  174 (255)
                      ++.+++|++|++|||||..+      +..+.+.++|...+++|+.+++.++|++.|+|++       +|+||++||..+.
T Consensus        79 ~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~-------~G~Iv~isS~~~~  151 (256)
T d1ulua_          79 GVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE-------GGGIVTLTYYASE  151 (256)
T ss_dssp             HHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE-------EEEEEEEECGGGT
T ss_pred             HHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhcc-------CCEEEEEeehHhc
Confidence            99999999999999999763      3456788999999999999999999999998864       5899999999877


Q ss_pred             cccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          175 FAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                      .               +.+....|+++|+|+.+|+|++|.|++++|  ||||+|+||+++|++.....
T Consensus       152 ~---------------~~~~~~~Y~asKaal~~ltr~lA~ela~~g--IrVN~I~PG~i~t~~~~~~~  202 (256)
T d1ulua_         152 K---------------VVPKYNVMAIAKAALEASVRYLAYELGPKG--VRVNAISAGPVRTVAARSIP  202 (256)
T ss_dssp             S---------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCC---------
T ss_pred             C---------------CCCCchHHHHHHHHHHHHHHHHHHHhcccC--CEEeeeccceeeeccccchh
Confidence            6               556778999999999999999999999999  99999999999999877654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=100.00  E-value=1.5e-39  Score=273.74  Aligned_cols=194  Identities=25%  Similarity=0.351  Sum_probs=172.2

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ...+|+||++|||||++|||++||++|+++|++|++++|+. +.++++.+++.+.  +.++.++++|++|++++++++++
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~~~v~~~~~~   89 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACVKANVGVVEDIVRMFEE   89 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh--CCceeeEeCCCCCHHHHHHHHHH
Confidence            34569999999999999999999999999999999998875 4567777777766  66899999999999999999999


Q ss_pred             HhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc
Q 025275          102 YNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE  179 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~  179 (255)
                      +.+.+|++|++|||+|...  +..+.+.++|.+.+++|+.+++.++|+++|+|.+       .|++++++|..+...   
T Consensus        90 ~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~-------~g~~i~i~s~~~~~~---  159 (272)
T d1g0oa_          90 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEI-------GGRLILMGSITGQAK---  159 (272)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCT-------TCEEEEECCGGGTCS---
T ss_pred             HHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccc-------ccccccccccccccc---
Confidence            9999999999999999764  4567899999999999999999999999999965       579999998875432   


Q ss_pred             CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          180 GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                                 +.+....|+++|+|+++|+|++|.|++++|  ||||+|+||+++|++.+..
T Consensus       160 -----------~~~~~~~Y~asKaal~~ltk~lA~e~~~~g--IrVN~I~PG~v~T~~~~~~  208 (272)
T d1g0oa_         160 -----------AVPKHAVYSGSKGAIETFARCMAIDMADKK--ITVNVVAPGGIKTDMYHAV  208 (272)
T ss_dssp             -----------SCSSCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEEEECCBSSHHHHHH
T ss_pred             -----------cccchhhHHHHHHHHHHHHHHHHHHhchhC--eEEEEEccCCcCChHHHHH
Confidence                       445677899999999999999999999998  9999999999999987653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-39  Score=272.39  Aligned_cols=193  Identities=27%  Similarity=0.254  Sum_probs=176.3

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.... +..+..+.+|+++.+++...++++.+.+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999999998887664 5678999999999999999999999999


Q ss_pred             CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          107 RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       107 g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      |.+|+++||||...  ++.+.+.++|.+++++|+.+++.+++.++|+|++      ++|+||++||.++..         
T Consensus        91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~------~~G~ii~isS~~~~~---------  155 (269)
T d1xu9a_          91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQ------SNGSIVVVSSLAGKV---------  155 (269)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------HTCEEEEEEEGGGTS---------
T ss_pred             CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHh------cCCcceEeccchhcC---------
Confidence            99999999999764  4567899999999999999999999999999976      368999999999876         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                            +.+....|++||+|+.+|+++|+.|++.++.+|+||+|+||+|+|++.++.
T Consensus       156 ------~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~~~~~  206 (269)
T d1xu9a_         156 ------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKA  206 (269)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHH
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcHHHHh
Confidence                  666889999999999999999999998766669999999999999987643

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=3.2e-39  Score=268.32  Aligned_cols=199  Identities=24%  Similarity=0.329  Sum_probs=170.0

Q ss_pred             CcEEEEecCCCchHHHHHHHHH---HcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc-
Q 025275           29 GLTAIVTGASSGIGTETARVLA---LRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS-  104 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~---~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~-  104 (255)
                      .|+||||||++|||+++|++|+   +.|++|++++|+.++++++.+ +.+.  +.++.+++||++|+++++++++++.+ 
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~-~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~   78 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED-LAKN--HSNIHILEIDLRNFDAYDKLVADIEGV   78 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHH-HHHH--CTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHhc--CCcEEEEEEEeccHHHHHHHHhhhHHH
Confidence            3899999999999999999996   478999999999999887654 3333  45899999999999999999998854 


Q ss_pred             -CCCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCCCCeEEEecCCccc
Q 025275          105 -QGRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQK------SSREGRIVNVSSEAHR  174 (255)
Q Consensus       105 -~~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~~~~g~ii~vsS~~~~  174 (255)
                       +++++|+||||||+..   +..+.+.++|++++++|+.|+++++++++|+|+++...      ....|++|+++|..+.
T Consensus        79 ~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~  158 (248)
T d1snya_          79 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGS  158 (248)
T ss_dssp             HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGC
T ss_pred             hhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence             6789999999999764   34568899999999999999999999999999874321      2357899999999876


Q ss_pred             cccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCcc
Q 025275          175 FAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGIL  244 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~~  244 (255)
                      ....            +.+++..|++||+|+.+|+++++.++.++|  |+||+|+||+|+|+|.....+.
T Consensus       159 ~~~~------------~~~~~~~Y~aSKaal~~lt~~la~e~~~~g--I~vn~v~PG~v~T~m~~~~~~~  214 (248)
T d1snya_         159 IQGN------------TDGGMYAYRTSKSALNAATKSLSVDLYPQR--IMCVSLHPGWVKTDMGGSSAPL  214 (248)
T ss_dssp             STTC------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGT--CEEEEECCCSBCSTTTCTTCSB
T ss_pred             cCCC------------CCCChHHHHHHHHHHHHHHHHHHHHhCCCC--eEEEEcCCCcccCCcccccCCC
Confidence            5211            345677999999999999999999999998  9999999999999998876553

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=100.00  E-value=7.7e-39  Score=272.23  Aligned_cols=207  Identities=21%  Similarity=0.176  Sum_probs=178.9

Q ss_pred             CCcccccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Q 025275           15 SSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLAS   94 (255)
Q Consensus        15 ~~~~~~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s   94 (255)
                      ++..+.|++..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+.. +.++.++++|++++++
T Consensus        11 ~~~~~~~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~   89 (294)
T d1w6ua_          11 SPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDM   89 (294)
T ss_dssp             CCCCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHH
T ss_pred             CcccccCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHH
Confidence            455666778889999999999999999999999999999999999999999999999887764 5678999999999999


Q ss_pred             HHHHHHHHhcCCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           95 VRKFASEYNSQGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        95 i~~~~~~~~~~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ++.+++.+.++++++|++|||||...  +....+.+++++.+.+|+.+.+.+.+.+.+.+...    ...+.+++++|..
T Consensus        90 v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~~~~i~~~ss~~  165 (294)
T d1w6ua_          90 VQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKA----QKGAAFLSITTIY  165 (294)
T ss_dssp             HHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCEEEEEECCTH
T ss_pred             HHHHhhhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccc----cccccccccccch
Confidence            99999999999999999999999764  35668889999999999999999998888777652    4567888888887


Q ss_pred             cccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          173 HRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                      +..               +.++...|+++|+|+.+|+|++|.|++++|  ||||+|+||+|+|++....-.
T Consensus       166 ~~~---------------~~~~~~~YsasKaal~~ltk~lA~ela~~g--IrVN~I~PG~i~T~~~~~~~~  219 (294)
T d1w6ua_         166 AET---------------GSGFVVPSASAKAGVEAMSKSLAAEWGKYG--MRFNVIQPGPIKTKGAFSRLD  219 (294)
T ss_dssp             HHH---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCC------CC
T ss_pred             hhh---------------cccccchHHHHHHHHHHHHHHHHHHHhHhC--eEEEEEccCccccchhhhccC
Confidence            665               445678899999999999999999999999  999999999999998765543

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=3.6e-40  Score=274.64  Aligned_cols=182  Identities=18%  Similarity=0.166  Sum_probs=162.5

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      .|+|||||++|||+++|++|+++|++|++++|+.+.++++.... ..       +.++|++++++++++++++.++||++
T Consensus         1 ~TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~-~~-------~~~~dv~~~~~~~~~~~~~~~~~G~i   72 (252)
T d1zmta1           1 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFA-ET-------YPQLKPMSEQEPAELIEAVTSAYGQV   72 (252)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHH-HH-------CTTSEECCCCSHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhh-Cc-------EEEeccCCHHHHHHHHHHHHHHcCCC
Confidence            37999999999999999999999999999999988877654432 22       34589999999999999999999999


Q ss_pred             eEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          110 NILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       110 d~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      |+||||||+..   ++.+.+.++|++.+++|+.++++++|+++|+|++     ++.|+||++||..+..           
T Consensus        73 DiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~-----~~~G~IV~isS~~~~~-----------  136 (252)
T d1zmta1          73 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKK-----RKSGHIIFITSATPFG-----------  136 (252)
T ss_dssp             CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCCEEEEECCSTTTS-----------
T ss_pred             CEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcc-----cccceeeccccccccc-----------
Confidence            99999999753   4567899999999999999999999999999988     4679999999998776           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                          +.+....|+++|+|+.+|+|+++.|++++|  ||||+|+||+|+|++....
T Consensus       137 ----~~~~~~~Y~asKaal~~lt~~lA~ela~~g--IrVN~I~PG~i~T~~~~~~  185 (252)
T d1zmta1         137 ----PWKELSTYTSARAGACTLANALSKELGEYN--IPVFAIGPNYLHSEDSPYF  185 (252)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--CCEEEEEESSBCCBTCCSS
T ss_pred             ----ccccccccccccccHHHHHHHHHHHhcccC--cEEEEEecCCCcCcchhhh
Confidence                556778999999999999999999999999  9999999999999987654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=274.82  Aligned_cols=205  Identities=26%  Similarity=0.306  Sum_probs=171.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +++|||||++|||+++|++|+++ |++|++++|+.++++++.+++++.  +.++.+++||++|.++++++++++.+++|+
T Consensus         4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~   81 (275)
T d1wmaa1           4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKEYGG   81 (275)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            46699999999999999999986 899999999999999999999887  567899999999999999999999999999


Q ss_pred             eeEEEEccCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC---
Q 025275          109 LNILINNAGIMAS--PFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF---  183 (255)
Q Consensus       109 id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~---  183 (255)
                      +|+||||||+..+  ..+.+.++|++.+++|+.|+++++++++|+|++       .|+||++||..+..+.+...++   
T Consensus        82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~-------~g~ivnisS~~~~~~~~~~~~y~~~  154 (275)
T d1wmaa1          82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP-------QGRVVNVSSIMSVRALKSCSPELQQ  154 (275)
T ss_dssp             EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE-------EEEEEEECCHHHHHHHHTSCHHHHH
T ss_pred             cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCcccccccceeccccccchhhhh
Confidence            9999999998743  455677899999999999999999999999964       5899999998876543322110   


Q ss_pred             ------------------------CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhC--CCcEEEEEeeCCceecCc
Q 025275          184 ------------------------DKINDESAYNSFGAYGQSKLANILHAKELAKHLKED--GVNITANSLHPGSIVTNL  237 (255)
Q Consensus       184 ------------------------~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~--~~~i~vn~v~PG~v~t~~  237 (255)
                                              ...+ .....+...|++||+++.+|++.++.++.++  +.+|+||+|+||+|+|+|
T Consensus       155 k~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m  233 (275)
T d1wmaa1         155 KFRSETITEEELVGLMNKFVEDTKKGVH-QKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDM  233 (275)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHHHTTCT-TTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTT
T ss_pred             hhcccccchhhhccccccchhccccccc-ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCc
Confidence                                    0011 1122345679999999999999999999764  224999999999999999


Q ss_pred             ccccCcc
Q 025275          238 FRYNGIL  244 (255)
Q Consensus       238 ~~~~~~~  244 (255)
                      .+.....
T Consensus       234 ~~~~~~~  240 (275)
T d1wmaa1         234 AGPKATK  240 (275)
T ss_dssp             TCTTCSB
T ss_pred             ccCcccC
Confidence            8765543

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-39  Score=273.89  Aligned_cols=190  Identities=23%  Similarity=0.257  Sum_probs=157.9

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEE---EeccchHHHHHHHHHhh-CCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMA---VRNMAAGKDVREAIVKE-IPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~---~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .|+||||||++|||+++|++|+++|++|+++   .|+.+...++.+...+. ..+.++.++.||++|+++++.+++++.+
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~   81 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence            5889999999999999999999999975544   55544444444444332 2356899999999999999999998754


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                        |.+|++|||+|...  +..+.+.++|++.+++|+.|+++++|+++|+|.+     ++.|+||++||.++..       
T Consensus        82 --g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~-----~~~G~Iv~isS~~g~~-------  147 (285)
T d1jtva_          82 --GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKR-----RGSGRVLVTGSVGGLM-------  147 (285)
T ss_dssp             --SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEEEEGGGTS-------
T ss_pred             --cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHH-----cCCCceEEEechhhcC-------
Confidence              78999999999774  4567899999999999999999999999999987     4579999999999877       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                              +.+....|++||+|+.+|+++++.|++++|  |+||+|+||+|+|++++...
T Consensus       148 --------~~~~~~~Y~asKaal~~l~~~la~El~~~g--IrVn~V~PG~v~T~~~~~~~  197 (285)
T d1jtva_         148 --------GLPFNDVYCASKFALEGLCESLAVLLLPFG--VHLSLIECGPVHTAFMEKVL  197 (285)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCC-------
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHhhccC--cEEEEEecCCCCChHHHHhc
Confidence                    566788999999999999999999999999  99999999999999987654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.4e-38  Score=262.11  Aligned_cols=176  Identities=23%  Similarity=0.197  Sum_probs=153.3

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      |+||++|||||++|||+++|++|+++|++|++++|+.+.+++       .    ...++.||+++.  +    +++.+++
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~-------~----~~~~~~~Dv~~~--~----~~~~~~~   64 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR-------S----GHRYVVCDLRKD--L----DLLFEKV   64 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-------T----CSEEEECCTTTC--H----HHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh-------c----CCcEEEcchHHH--H----HHHHHHh
Confidence            689999999999999999999999999999999998654322       1    235788999874  3    3445567


Q ss_pred             CCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          107 RPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       107 g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      |++|+||||||...  ++.+++.++|++.+++|+.++++++|+++|+|++     ++.|+||+++|..+..         
T Consensus        65 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~-----~~~G~ii~i~S~~~~~---------  130 (234)
T d1o5ia_          65 KEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKE-----KGWGRIVAITSFSVIS---------  130 (234)
T ss_dssp             CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCGGGTS---------
T ss_pred             CCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccc-----cccccccccccccccc---------
Confidence            89999999999763  4567899999999999999999999999999997     4679999999988665         


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                            +.+....|+++|+|+.+|+|++|.|++++|  ||||+|+||+++|++....
T Consensus       131 ------~~~~~~~Y~asKaal~~ltk~lA~ela~~g--IrVN~I~PG~v~T~~~~~~  179 (234)
T d1o5ia_         131 ------PIENLYTSNSARMALTGFLKTLSFEVAPYG--ITVNCVAPGWTETERVKEL  179 (234)
T ss_dssp             ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSBCCTTHHHH
T ss_pred             ------cccccccchhHHHHHHHHHHHHHHHhcccC--eEEeecccCccchhhhhhh
Confidence                  566778999999999999999999999999  9999999999999987653

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=9.9e-38  Score=259.52  Aligned_cols=202  Identities=28%  Similarity=0.332  Sum_probs=159.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |+.|+||||||++|||+++|++|+++|+  +|++++|+.++++++.    +. .+.++.++++|++|+++++++++++.+
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~----~~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~   75 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK----SI-KDSRVHVLPLTVTCDKSLDTFVSKVGE   75 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH----TC-CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHH----Hh-hCCceEEEEEecCCHHHHHHHHHHHHH
Confidence            3459999999999999999999999996  6999999998876543    22 256899999999999999999999988


Q ss_pred             CCC--CeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCCCCeEEEecCCcc
Q 025275          105 QGR--PLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQK------SSREGRIVNVSSEAH  173 (255)
Q Consensus       105 ~~g--~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~~~~g~ii~vsS~~~  173 (255)
                      .++  .+|+||||||+..   +..+.+.++|++.+++|+.|++++++.++|+|++....      ....++++++++..+
T Consensus        76 ~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~  155 (250)
T d1yo6a1          76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG  155 (250)
T ss_dssp             HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred             HhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccc
Confidence            765  4999999999763   34578889999999999999999999999999875432      134578999998776


Q ss_pred             ccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          174 RFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                      ......        ...+..+..+|++||+|+.+|+++++.|++++|  |+||+|+||+|+|+|......
T Consensus       156 ~~~~~~--------~~~~~~~~~aY~aSKaal~~l~~~la~el~~~g--I~v~~i~PG~v~T~m~~~~~~  215 (250)
T d1yo6a1         156 SITDNT--------SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDN--VLVVNFCPGWVQTNLGGKNAA  215 (250)
T ss_dssp             CSTTCC--------STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGT--CEEEEEECCCC----------
T ss_pred             cccCCc--------ccccchhHHHHHHHHHHHHHHHHHHHHHhcccC--eEEEEEecCCCCCCCCCCCCC
Confidence            543221        111333556799999999999999999999998  999999999999999876544

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-37  Score=255.93  Aligned_cols=196  Identities=22%  Similarity=0.254  Sum_probs=169.3

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.......+|+.+.+.++....++...
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKDVQTALALAKGK   76 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCCcccccccccccccccccccccccc
Confidence            689999999999999999999999999999999999999998888777     457889999999999999999999888


Q ss_pred             CCCeeEEEEccCCCC--------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCeEEEecCCccccc
Q 025275          106 GRPLNILINNAGIMA--------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQ-KSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~g~ii~vsS~~~~~~  176 (255)
                      ++.+|.+++|++...        +..+.+.++|++++++|+.++++++|++.|++..+.. ...+.|+||++||..+.. 
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~-  155 (248)
T d2o23a1          77 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE-  155 (248)
T ss_dssp             HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH-
T ss_pred             cccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc-
Confidence            889999999987542        2345778999999999999999999999999976432 224578999999999876 


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                                    +.+++..|+++|+|+.+|+|+++.|++++|  ||||+|+||+++|++......
T Consensus       156 --------------~~~~~~~Y~asKaal~~lt~~la~e~~~~g--IrvN~I~PG~i~T~~~~~~~~  206 (248)
T d2o23a1         156 --------------GQVGQAAYSASKGGIVGMTLPIARDLAPIG--IRVMTIAPGLFGTPLLTSLPE  206 (248)
T ss_dssp             --------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECCBCCC-------
T ss_pred             --------------CCCCchHHHHHHHHHHHHHHHHHHHhcccC--cceeeeccCceecchhhcCCH
Confidence                          566788999999999999999999999999  999999999999999887654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-37  Score=256.21  Aligned_cols=183  Identities=26%  Similarity=0.352  Sum_probs=158.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .++||++|||||++|||+++|++|+++|++|++++|+++++++..    +   ...+.+..+|+++++.++...++    
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~----~---~~~~~~~~~d~~~~~~~~~~~~~----   71 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE----K---YPGIQTRVLDVTKKKQIDQFANE----   71 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG----G---STTEEEEECCTTCHHHHHHHHHH----
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----h---ccCCceeeeeccccccccccccc----
Confidence            489999999999999999999999999999999999977654432    2   23577888999988776665554    


Q ss_pred             CCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          106 GRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       106 ~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      ++++|+||||||...  ++.+.+.++|++.+++|+.++++++|++.|+|.+     .+.|+||++||..+...       
T Consensus        72 ~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~-----~~~g~Ii~isS~~~~~~-------  139 (245)
T d2ag5a1          72 VERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLA-----QKSGNIINMSSVASSVK-------  139 (245)
T ss_dssp             CSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----HTCEEEEEECCSBTTTB-------
T ss_pred             cccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCccccc-----CCCceeeeeechhhccC-------
Confidence            578999999999875  3677899999999999999999999999999988     56789999999876421       


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRY  240 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~  240 (255)
                             +.+....|+++|+|+++|+|++|.|++++|  ||||+|+||+|+|++.+.
T Consensus       140 -------~~~~~~~Y~~sKaal~~l~r~lA~e~~~~g--IrvN~I~PG~i~T~~~~~  187 (245)
T d2ag5a1         140 -------GVVNRCVYSTTKAAVIGLTKSVAADFIQQG--IRCNCVCPGTVDTPSLQE  187 (245)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCEECHHHHH
T ss_pred             -------CccchhHHHHHHHHHHHHHHHHHHHhhhhC--cEEEEEeeceeechhhHh
Confidence                   455778999999999999999999999999  999999999999998764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.5e-35  Score=242.00  Aligned_cols=180  Identities=16%  Similarity=0.118  Sum_probs=154.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC--
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ--  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~--  105 (255)
                      +||++|||||++|||+++|++|+++|++|++++++....            ......+.+|.++.++.+.+..++.+.  
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE------------ASASVIVKMTDSFTEQADQVTAEVGKLLG   68 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT------------SSEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccccceeecccCcHHHHHHHHHHHHHHhC
Confidence            589999999999999999999999999999999876531            335567788888888888888877665  


Q ss_pred             CCCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          106 GRPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       106 ~g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      .+++|+||||||...   +..+.+.++|++++++|+.++++++++++|+|++       +|+||++||.++..       
T Consensus        69 ~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~-------~G~Iv~isS~~~~~-------  134 (236)
T d1dhra_          69 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE-------GGLLTLAGAKAALD-------  134 (236)
T ss_dssp             TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE-------EEEEEEECCGGGGS-------
T ss_pred             CCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhccc-------ccceeEEccHHHcC-------
Confidence            357999999999653   2345567889999999999999999999999964       58999999998776       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhh--CCCcEEEEEeeCCceecCcccccCc
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKE--DGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~--~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                              +.+....|++||+|+.+|+|+++.|++.  +|  ||||+|+||+++|++.+...+
T Consensus       135 --------~~~~~~~Y~asKaal~~lt~~la~El~~~~~g--I~vn~v~PG~v~T~~~~~~~~  187 (236)
T d1dhra_         135 --------GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSG--AAAIAVLPVTLDTPMNRKSMP  187 (236)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTT--CEEEEEEESCEECHHHHHHST
T ss_pred             --------CccCCcccHHHHHHHHHHHHHHHHHhccCCCc--EEEEEEEeccCcCCcchhhCc
Confidence                    5667889999999999999999999984  56  999999999999999875544

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2e-34  Score=237.33  Aligned_cols=179  Identities=16%  Similarity=0.076  Sum_probs=150.8

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc--CC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS--QG  106 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~--~~  106 (255)
                      +.+||||||++|||+++|++|+++|++|++++|+.+..            ......+.+|+++.+......+.+.+  ++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ------------ADSNILVDGNKNWTEQEQSILEQTASSLQG   69 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT------------SSEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc------------ccccceeccccCchhHHHHHHHHHHHHhcC
Confidence            35679999999999999999999999999999987642            23456677888888877777666655  57


Q ss_pred             CCeeEEEEccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          107 RPLNILINNAGIMA---SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       107 g~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                      +++|+||||||...   +..+...+.|+.++++|+.++++++|+++|+|++       +|+||++||..+..        
T Consensus        70 g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~-------~g~Iv~isS~~~~~--------  134 (235)
T d1ooea_          70 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP-------GGLLQLTGAAAAMG--------  134 (235)
T ss_dssp             CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE-------EEEEEEECCGGGGS--------
T ss_pred             CCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhccccccc-------ceEEEEeccHHhcC--------
Confidence            89999999999753   2334456789999999999999999999999964       58999999998776        


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                             +.+++..|+++|+|+.+|+++++.|++..+.+|++|+|+||+++|++.+..
T Consensus       135 -------~~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~~~~~  185 (235)
T d1ooea_         135 -------PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKW  185 (235)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHH
T ss_pred             -------CcccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcchhhh
Confidence                   666789999999999999999999998544459999999999999988754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-33  Score=232.92  Aligned_cols=189  Identities=14%  Similarity=0.185  Sum_probs=162.8

Q ss_pred             CCCcEEEEecCCC--chHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~--giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |+||++|||||+|  |||+++|+.|+++|++|++++|+++. .+..+++...  ..+.....+|+++..++...++++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL-KGRVEEFAAQ--LGSDIVLQCDVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTT-HHHHHHHHHH--TTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHHHHHhh--cCCcceeecccchHHHHHHHHHHhhh
Confidence            7899999999999  89999999999999999999999654 4444555544  44678889999999999999999999


Q ss_pred             CCCCeeEEEEccCCCCCC-------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccc
Q 025275          105 QGRPLNILINNAGIMASP-------FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAY  177 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~-------~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~  177 (255)
                      .++.+|++|||++.....       .....+.+...+.+|+.+.+.+++.+.+.+.+       ++.||++||..+..  
T Consensus        80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~Ii~iss~~~~~--  150 (258)
T d1qsga_          80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP-------GSALLTLSYLGAER--  150 (258)
T ss_dssp             TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-------EEEEEEEECGGGTS--
T ss_pred             cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CcEEEEecchhhcc--
Confidence            999999999999876321       13556778899999999999999999988854       56899999988665  


Q ss_pred             ccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccC
Q 025275          178 SEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNG  242 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~  242 (255)
                                   +.+.+..|+++|+|+++|+|++|.|++++|  ||||+|+||+|+|++.....
T Consensus       151 -------------~~~~~~~Y~~sKaal~~ltr~lA~el~~~g--IrVN~I~PG~i~T~~~~~~~  200 (258)
T d1qsga_         151 -------------AIPNYNVMGLAKASLEANVRYMANAMGPEG--VRVNAISAGPIRTLAASGIK  200 (258)
T ss_dssp             -------------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTT--EEEEEEEECCCCCTTGGGST
T ss_pred             -------------CCCCcHHHHHHHHHHHHHHHHHHHHhCccC--ceeecccccccccccccccc
Confidence                         555778999999999999999999999998  99999999999999977654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=1.6e-32  Score=231.49  Aligned_cols=189  Identities=18%  Similarity=0.193  Sum_probs=151.4

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc-chHHHHHHHHHhhCCCCceEE-----------------EEeCCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNM-AAGKDVREAIVKEIPSAKVDA-----------------MELDVSS   91 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~Dl~~   91 (255)
                      .++|||||++|||+++|++|+++|++|++++++. +..+++.+++.+..+ .....                 ..+|+++
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~dv~~   81 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVATAPVSGADGSAPVTL   81 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcC-CceEEEEeecccccccccccccccccCCC
Confidence            5899999999999999999999999999987754 456677777776643 23444                 4556999


Q ss_pred             HHHHHHHHHHHhcCCCCeeEEEEccCCCCC--CCCCChHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025275           92 LASVRKFASEYNSQGRPLNILINNAGIMAS--PFMLSKDN--------------IELQFATNHLGHFLLTHLLLDTMKKT  155 (255)
Q Consensus        92 ~~si~~~~~~~~~~~g~id~lv~~ag~~~~--~~~~~~~~--------------~~~~~~~n~~~~~~~~~~~~~~~~~~  155 (255)
                      +++++++++++.+++|++|+||||||...+  +.+.+.++              +...+.+|+.++++++|.+.+.+...
T Consensus        82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~  161 (284)
T d1e7wa_          82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT  161 (284)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence            999999999999999999999999998742  33333333              44578999999999999999887643


Q ss_pred             hc-cCCCCCeEEEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCcee
Q 025275          156 AQ-KSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIV  234 (255)
Q Consensus       156 ~~-~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~  234 (255)
                      .. .....++||+++|..+..               +.+++..|+++|+|+.+|+|++|.|++++|  ||||+|+||++.
T Consensus       162 ~~~~~~~~~~ii~~~s~~~~~---------------~~~~~~~Y~asKaal~~lt~~lA~el~~~g--IrvN~I~PG~t~  224 (284)
T d1e7wa_         162 PAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQ--IRVNGVGPGLSV  224 (284)
T ss_dssp             CGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESSBC
T ss_pred             HHHhcCCCCcccccccccccC---------------CccceeeeccccccchhhhHHHHHHhCCcc--cccccccccccc
Confidence            22 224567899999988655               556778999999999999999999999999  999999999865


Q ss_pred             cC
Q 025275          235 TN  236 (255)
Q Consensus       235 t~  236 (255)
                      +.
T Consensus       225 ~~  226 (284)
T d1e7wa_         225 LV  226 (284)
T ss_dssp             CG
T ss_pred             cc
Confidence            54

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.3e-32  Score=237.08  Aligned_cols=189  Identities=15%  Similarity=0.176  Sum_probs=153.4

Q ss_pred             CCcEEEEec--CCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC----------CCceEEEE---------
Q 025275           28 TGLTAIVTG--ASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP----------SAKVDAME---------   86 (255)
Q Consensus        28 ~~k~vlItG--~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~---------   86 (255)
                      .+|++||||  +++|||++||++|+++|++|++++++................          ........         
T Consensus         1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (329)
T d1uh5a_           1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred             CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence            379999999  568999999999999999999999987655444433322211          01112333         


Q ss_pred             -----------eCCCCHHHHHHHHHHHhcCCCCeeEEEEccCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 025275           87 -----------LDVSSLASVRKFASEYNSQGRPLNILINNAGIMA----SPFMLSKDNIELQFATNHLGHFLLTHLLLDT  151 (255)
Q Consensus        87 -----------~Dl~~~~si~~~~~~~~~~~g~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  151 (255)
                                 +|+++.++++.+++++.+.||++|++|||+|...    ++.+++.++|.+.+++|+.+.+.++|+++|+
T Consensus        81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~  160 (329)
T d1uh5a_          81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence                       3666788899999999999999999999999653    4567899999999999999999999999999


Q ss_pred             HHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCC-ccchHHhHHHHHHHHHHHHHHHhh-CCCcEEEEEee
Q 025275          152 MKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNS-FGAYGQSKLANILHAKELAKHLKE-DGVNITANSLH  229 (255)
Q Consensus       152 ~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sKaa~~~l~~~la~~~~~-~~~~i~vn~v~  229 (255)
                      |++       .|+||++||..+..               +.++ ...|+++|+|+++|+|++|.|+++ .|  ||||+|+
T Consensus       161 m~~-------~GsIv~iss~~~~~---------------~~p~y~~~y~asKaal~~ltr~lA~Ela~~~g--IRVNaI~  216 (329)
T d1uh5a_         161 MKP-------QSSIISLTYHASQK---------------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYN--IRINTIS  216 (329)
T ss_dssp             EEE-------EEEEEEEECGGGTS---------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHC--CEEEEEE
T ss_pred             ccc-------ccccccceeehhcc---------------cccccchhhhhhhccccccchhhHHHHhcccC--cEEEEEe
Confidence            954       68999999988765               3333 457999999999999999999986 58  9999999


Q ss_pred             CCceecCcccc
Q 025275          230 PGSIVTNLFRY  240 (255)
Q Consensus       230 PG~v~t~~~~~  240 (255)
                      ||+|+|+..+.
T Consensus       217 PG~i~T~a~~~  227 (329)
T d1uh5a_         217 AGPLKSRAATA  227 (329)
T ss_dssp             ECCCCCTTGGG
T ss_pred             cCcccchhhhc
Confidence            99999965443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.98  E-value=5.9e-32  Score=222.59  Aligned_cols=183  Identities=24%  Similarity=0.237  Sum_probs=154.3

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++|||||++|||+++|++|+++|++|++++|+.+              ..+....++|+++......+..+...... 
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~--------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-   65 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE--------------GEDLIYVEGDVTREEDVRRAVARAQEEAP-   65 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC--------------SSSSEEEECCTTCHHHHHHHHHHHHHHSC-
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc--------------cccceEeeccccchhhhHHHHHhhhcccc-
Confidence            589999999999999999999999999999999875              33577899999999999988888766654 


Q ss_pred             eeEEEEccCCCC------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCeEEEecCCccccccccCc
Q 025275          109 LNILINNAGIMA------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQ-KSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       109 id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      .+.++.+++...      .....+.+.|.+.+++|+.+.+.+++.+.+.+..... ..++.|+||++||..+..      
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~------  139 (241)
T d1uaya_          66 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE------  139 (241)
T ss_dssp             EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH------
T ss_pred             ccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc------
Confidence            455566665432      2334677899999999999999999999999765332 235679999999999877      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                               +.++...|+++|+|+.+|+|+++.|++++|  ||||+|+||+|+|+++.....
T Consensus       140 ---------~~~~~~~Y~asKaal~~lt~~lA~ela~~g--IrVN~V~PG~i~T~~~~~~~~  190 (241)
T d1uaya_         140 ---------GQIGQAAYAASKGGVVALTLPAARELAGWG--IRVVTVAPGLFDTPLLQGLPE  190 (241)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEECSCSSHHHHTSCH
T ss_pred             ---------CCCCchhhHHHHHHHHHHHHHHHHHHhhcC--CceeeecCCcccccccchhhh
Confidence                     566789999999999999999999999999  999999999999998765543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.97  E-value=3.4e-32  Score=230.94  Aligned_cols=198  Identities=18%  Similarity=0.139  Sum_probs=153.3

Q ss_pred             cCCCCCCcEEEEecCCC--chHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC-------CC---ceEEEEeC--
Q 025275           23 QGIDGTGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP-------SA---KVDAMELD--   88 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~--giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-------~~---~~~~~~~D--   88 (255)
                      +.++|+||++|||||+|  |||+++|++|+++|++|++++|+................       ..   .-....+|  
T Consensus         2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
T d1d7oa_           2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV   81 (297)
T ss_dssp             CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence            45789999999999876  999999999999999999999986543333222211110       00   01222333  


Q ss_pred             ------------------CCCHHHHHHHHHHHhcCCCCeeEEEEccCCC----CCCCCCChHHHHHHHHHHHHHHHHHHH
Q 025275           89 ------------------VSSLASVRKFASEYNSQGRPLNILINNAGIM----ASPFMLSKDNIELQFATNHLGHFLLTH  146 (255)
Q Consensus        89 ------------------l~~~~si~~~~~~~~~~~g~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~~~~~~~~  146 (255)
                                        .++..+++++++++.++||++|+||||||..    .++.+.+.++|.+.+++|+.+++++++
T Consensus        82 ~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~  161 (297)
T d1d7oa_          82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS  161 (297)
T ss_dssp             CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhh
Confidence                              2344567889999999999999999999975    345678999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHh-hCCCcEEE
Q 025275          147 LLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLK-EDGVNITA  225 (255)
Q Consensus       147 ~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~-~~~~~i~v  225 (255)
                      ++++.+.+       .|+++.+++......              ..+....|+++|+++.++++.++.++. ++|  |||
T Consensus       162 ~~~~~~~~-------~g~~~~~~~~~~~~~--------------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~g--Irv  218 (297)
T d1d7oa_         162 HFLPIMNP-------GGASISLTYIASERI--------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQN--IRV  218 (297)
T ss_dssp             HHGGGEEE-------EEEEEEEECGGGTSC--------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHC--CEE
T ss_pred             HHHHHhhc-------CCcceeeeehhhccc--------------ccccccceecccccccccccccchhccccce--EEe
Confidence            99988765       567777777654431              234556899999999999999999996 578  999


Q ss_pred             EEeeCCceecCcccccCc
Q 025275          226 NSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       226 n~v~PG~v~t~~~~~~~~  243 (255)
                      |+|+||+++|++.+....
T Consensus       219 N~I~PG~i~T~~~~~~~~  236 (297)
T d1d7oa_         219 NTISAGPLGSRAAKAIGF  236 (297)
T ss_dssp             EEEEECCCBCCCSSCCSH
T ss_pred             cccccccccchhhhhccC
Confidence            999999999999876543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.97  E-value=2.1e-31  Score=223.69  Aligned_cols=195  Identities=16%  Similarity=0.098  Sum_probs=145.2

Q ss_pred             CCCCcEEEEecCCC--chHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           26 DGTGLTAIVTGASS--GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        26 ~~~~k~vlItG~s~--giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .|+||++|||||+|  |||+++|++|+++|++|++++|++ ++++..+++.+.  +....++.+|++++++++++++++.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~-~~~~~~~~l~~~--~~~~~~~~~d~~~~~~~~~~~~~~~   78 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE-SLEKRVRPIAQE--LNSPYVYELDVSKEEHFKSLYNSVK   78 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST-TTHHHHHHHHHH--TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHhh--CCceeEeeecccchhhHHHHHHHHH
Confidence            37899999999765  999999999999999999999995 466667777766  4567889999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          104 SQGRPLNILINNAGIMASP--FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~--~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                      +.+|.+|++|+|+|.....  .+...+.++..+..+....+.....+...+.+.   .+.++.|+++|+.....      
T Consensus        79 ~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~s~~~~~~------  149 (274)
T d2pd4a1          79 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPL---LNNGASVLTLSYLGSTK------  149 (274)
T ss_dssp             HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG---EEEEEEEEEEECGGGTS------
T ss_pred             HHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccc---cccCcceeeeccccccc------
Confidence            9999999999999976431  222222223333333333333333333333221   12233455555554333      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcccccCc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYNGI  243 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~~~  243 (255)
                               +.+....|+++|+|+.+++|+++.|++++|  ||||+|+||+++|++......
T Consensus       150 ---------~~~~~~~y~asK~al~~ltr~lA~e~~~~G--IrvN~I~PG~v~T~~~~~~~~  200 (274)
T d2pd4a1         150 ---------YMAHYNVMGLAKAALESAVRYLAVDLGKHH--IRVNALSAGPIRTLASSGIAD  200 (274)
T ss_dssp             ---------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEEECCCCCTTGGGSTT
T ss_pred             ---------ccccchhhhHHHHHHHHHHHhhHHHhcCcC--ceecccccCcccCccccccCc
Confidence                     445667899999999999999999999999  999999999999998776543

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.97  E-value=5.2e-31  Score=219.97  Aligned_cols=192  Identities=18%  Similarity=0.167  Sum_probs=153.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-HHHHHHHHHhhCCCCceEEEEeCCCC----HHHHHHHHHHHhc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-GKDVREAIVKEIPSAKVDAMELDVSS----LASVRKFASEYNS  104 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~----~~si~~~~~~~~~  104 (255)
                      .++|||||++|||+++|++|+++|++|++++|+.++ .+++.+++.+.. +.+....++|+.+    ++.++.+++++.+
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDCSFR   80 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhc-CCceEEEecccccchhHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999765 466777777765 4466777766654    5678888888999


Q ss_pred             CCCCeeEEEEccCCCCCCC-------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCC
Q 025275          105 QGRPLNILINNAGIMASPF-------------MLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSE  171 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~-------------~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~  171 (255)
                      ++|++|++|||||+..+..             ......+...+..|+.+.+.+.+.....+..........+.++++++.
T Consensus        81 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (266)
T d1mxha_          81 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA  160 (266)
T ss_dssp             HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred             HhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence            9999999999999764311             122355677888999999999988888876644444566788888888


Q ss_pred             ccccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          172 AHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      .+..               +.+++..|++||+|+++|+|++|.++.++|  ||||+|+||+++|++..
T Consensus       161 ~~~~---------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~g--IrVN~I~PG~i~t~~~~  211 (266)
T d1mxha_         161 MTDL---------------PLPGFCVYTMAKHALGGLTRAAALELAPRH--IRVNAVAPGLSLLPPAM  211 (266)
T ss_dssp             GGGS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESSBSCCSSS
T ss_pred             cccc---------------cCcchhhhhhhHHHHhhhHHHHHHHhCccC--cEEEEeccCcEeccccC
Confidence            7665               566889999999999999999999999999  99999999999998654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.97  E-value=7.3e-31  Score=219.48  Aligned_cols=185  Identities=19%  Similarity=0.194  Sum_probs=150.9

Q ss_pred             CCCCcEEEEec--CCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           26 DGTGLTAIVTG--ASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        26 ~~~~k~vlItG--~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      -|+||++||||  |++|||+++|++|+++|++|++++|+.+++.   +++.+.. +.+...++||++++++++.+++.+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~---~~~~~~~-~~~~~~~~~dv~~~~~~~~~~~~v~   78 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI---QRITDRL-PAKAPLLELDVQNEEHLASLAGRVT   78 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH---HHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH---HHHHHHc-CCceeeEeeecccccccccccchhh
Confidence            47899999999  4579999999999999999999999987653   3333333 5578899999999999999988886


Q ss_pred             cC---CCCeeEEEEccCCCC-------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcc
Q 025275          104 SQ---GRPLNILINNAGIMA-------SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAH  173 (255)
Q Consensus       104 ~~---~g~id~lv~~ag~~~-------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~  173 (255)
                      +.   ++.+|+++||+|+.+       +..+.+.+++.+.+.+|+.+.+...+...++...        +.+++++|...
T Consensus        79 ~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~~s~~~  150 (268)
T d2h7ma1          79 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNP--------GGSIVGMDFDP  150 (268)
T ss_dssp             HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--------EEEEEEEECCC
T ss_pred             hccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccc--------ccccccccccc
Confidence            54   578999999999652       2345778899999999999999888887665432        34455545443


Q ss_pred             ccccccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccc
Q 025275          174 RFAYSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFR  239 (255)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~  239 (255)
                      ..               +.+....|+++|+|+.+|+|+++.|+.++|  ||||+|+||+++|++.+
T Consensus       151 ~~---------------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~g--IrVN~V~PG~v~T~~~~  199 (268)
T d2h7ma1         151 SR---------------AMPAYNWMTVAKSALESVNRFVAREAGKYG--VRSNLVAAGPIRTLAMS  199 (268)
T ss_dssp             SS---------------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEEECCCCCHHHH
T ss_pred             cc---------------cCcccchhhccccchhhccccchhhhhccC--CcceEEecCCCCChhhh
Confidence            33               555778999999999999999999999999  99999999999999875

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.96  E-value=6.2e-29  Score=206.92  Aligned_cols=175  Identities=24%  Similarity=0.288  Sum_probs=146.0

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc---chHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNM---AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++|||||++|||+++|++|+++|+ +|++++|+.   +..++..+++.+.  +.++.++.||++|+++++.+++++.+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dv~d~~~~~~~~~~i~~   86 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELLGGIGD   86 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhc--cccccccccccchHHHHHHhhccccc
Confidence            46999999999999999999999998 589999874   4566677777665  67899999999999999999998866


Q ss_pred             CCCCeeEEEEccCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCcc
Q 025275          105 QGRPLNILINNAGIMA--SPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIR  182 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~  182 (255)
                      . +.+|.+|||+|...  +..+.+.+++...+++|+.+++++.+.+.    .     ...++||++||+++..       
T Consensus        87 ~-~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~----~-----~~~~~iv~~SS~a~~~-------  149 (259)
T d2fr1a1          87 D-VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTR----E-----LDLTAFVLFSSFASAF-------  149 (259)
T ss_dssp             T-SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHT----T-----SCCSEEEEEEEHHHHT-------
T ss_pred             c-ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhh----c-----cCCceEeeecchhhcc-------
Confidence            5 57999999999874  45678899999999999999999877532    2     3467999999999887       


Q ss_pred             CCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          183 FDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                              +.++++.|+++|+++++|++    ++..+|  +++++|+||.+.++
T Consensus       150 --------g~~~~~~YaAaka~l~~la~----~~~~~G--i~v~~I~pg~~~~~  189 (259)
T d2fr1a1         150 --------GAPGLGGYAPGNAYLDGLAQ----QRRSDG--LPATAVAWGTWAGS  189 (259)
T ss_dssp             --------CCTTCTTTHHHHHHHHHHHH----HHHHTT--CCCEEEEECCBC--
T ss_pred             --------CCcccHHHHHHHHhHHHHHH----HHHhCC--CCEEECCCCcccCC
Confidence                    55678899999998877654    555677  99999999988755

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.94  E-value=1.3e-25  Score=186.01  Aligned_cols=181  Identities=21%  Similarity=0.251  Sum_probs=128.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC-CCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ-GRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~-~g~  108 (255)
                      |++|||||++|||+++|++|+++|++|++++|+.++                   ..+|+.+.+..+....++..+ .+.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~-------------------~~~d~~~~~~~~~~~~~~~~~~~~~   62 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE-------------------VIADLSTAEGRKQAIADVLAKCSKG   62 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS-------------------EECCTTSHHHHHHHHHHHHTTCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH-------------------HHHHhcCHHHHHHHHHHHHHHhCCC
Confidence            899999999999999999999999999999997642                   356999999888877766555 467


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC----
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD----  184 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~----  184 (255)
                      +|++|+|||+...     .+.+.....+|..+...+.+...+.+.+     .....+.++.+...........+..    
T Consensus        63 id~lv~~Ag~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (257)
T d1fjha_          63 MDGLVLCAGLGPQ-----TKVLGNVVSVNYFGATELMDAFLPALKK-----GHQPAAVVISSVASAHLAFDKNPLALALE  132 (257)
T ss_dssp             CSEEEECCCCCTT-----CSSHHHHHHHHTHHHHHHHHHHHHHHHT-----SSSCEEEEECCGGGGSSCGGGCTTHHHHH
T ss_pred             CcEEEEcCCCCCc-----HHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hccCcceeeeeccccchhhhhhhhhhhcc
Confidence            9999999986432     3456777889999999999999998876     3344555555543222100000000    


Q ss_pred             --------CC-CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCccccc
Q 025275          185 --------KI-NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLFRYN  241 (255)
Q Consensus       185 --------~~-~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~~~~  241 (255)
                              .+ ......++...|+++|+|+++|+|++|.|++++|  ||||+|+||+++|++++..
T Consensus       133 ~g~~~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~g--IrVN~I~PG~i~T~~~~~~  196 (257)
T d1fjha_         133 AGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAG--VRLNTIAPGATETPLLQAG  196 (257)
T ss_dssp             HTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTT--CEEEEEEECC---------
T ss_pred             CCcEEEEeeehhccCCCcchHHHHHHhhhhhcccccccccccccc--ccccccccCCcCChhHHhh
Confidence                    00 0000112345799999999999999999999999  9999999999999987653

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=8.6e-22  Score=170.48  Aligned_cols=185  Identities=13%  Similarity=0.074  Sum_probs=136.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-----HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-----GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .|+||||||+|.||.+++++|+++|++|++++|....     ++...+.....  ..++.++++|++|.++++++++++ 
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~-   77 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTC--NPKFHLHYGDLSDTSNLTRILREV-   77 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-----------------------CCEEECCCCSSCHHHHHHHHHHH-
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhc--CCCeEEEEeecCCHHHHHHHHhcc-
Confidence            3899999999999999999999999999999985432     22222222122  457999999999999999999987 


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                          .+|+++|+|+.....  .+.++..+.+++|+.|+.++++++...-.+      +..++|++||...+ +.++.   
T Consensus        78 ----~~d~v~h~aa~~~~~--~~~~~~~~~~~~Nv~gt~nllea~~~~~~~------~~~r~i~~SS~~vY-G~~~~---  141 (357)
T d1db3a_          78 ----QPDEVYNLGAMSHVA--VSFESPEYTADVDAMGTLRLLEAIRFLGLE------KKTRFYQASTSELY-GLVQE---  141 (357)
T ss_dssp             ----CCSEEEECCCCCTTT--TTTSCHHHHHHHHTHHHHHHHHHHHHTTCT------TTCEEEEEEEGGGG-TTCCS---
T ss_pred             ----CCCEEEEeecccccc--hhhhCHHHHHHHHHHHHHHHHHHHHHhCCC------CCcEEEEEEchhhh-CCCCC---
Confidence                699999999976543  234556778999999999999988654322      34579999996543 33322   


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .+++++.+..+...|+.+|.+.+.+++.++..+.     +.+..+.|+.+..|.
T Consensus       142 ~~~~E~~~~~P~~~Y~~sK~~~E~~~~~~~~~~~-----l~~~ilR~~~vyGp~  190 (357)
T d1db3a_         142 IPQKETTPFYPRSPYAVAKLYAYWITVNYRESYG-----MYACNGILFNHESPR  190 (357)
T ss_dssp             SSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC-----CCEEEEEECCEECTT
T ss_pred             CCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHhC-----CCEEEEEeccccCCC
Confidence            2456666777778999999999998888877653     666679998888874

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=2.9e-20  Score=159.96  Aligned_cols=187  Identities=20%  Similarity=0.144  Sum_probs=135.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |+||||||+|.||++++++|+++|++|+++++................ ..++.++++|++|.+.++.+++..     ++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~-----~~   75 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEY-----KI   75 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHS-----CC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhc-ccCCeEEEeecCCHHHHHHHHhcc-----CC
Confidence            789999999999999999999999999999864332211112221111 347889999999999999998865     69


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+|+.....  ...+.....+.+|+.++.++++++...-.+         ++|++||...+...+......++.++
T Consensus        76 d~VihlAa~~~~~--~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~---------~~i~~SS~~vyg~~~~~~~~~~~~e~  144 (347)
T d1z45a2          76 DSVIHFAGLKAVG--ESTQIPLRYYHNNILGTVVLLELMQQYNVS---------KFVFSSSATVYGDATRFPNMIPIPEE  144 (347)
T ss_dssp             CEEEECCSCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHHHHTCC---------EEEEEEEGGGGCCGGGSTTCCSBCTT
T ss_pred             CEEEEcccccccc--ccccCcccccccchhhhHHHHHHHHhcccc---------eEEeecceeeecCcccCCCCCccccc
Confidence            9999999964322  233455677899999999999998754433         89999998866543333333355666


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      .+..+...|+.+|.+.+.+++.+...... +  +.+..+.|+.+..+
T Consensus       145 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~-~--~~~~~lR~~~v~g~  188 (347)
T d1z45a2         145 CPLGPTNPYGHTKYAIENILNDLYNSDKK-S--WKFAILRYFNPIGA  188 (347)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHSTT-S--CEEEEEEECEEECC
T ss_pred             cCCCCCChhHhHHHHHHHHHHHHHHhhcc-C--CcEEEEeecceEee
Confidence            67777789999999988877777654332 2  66666777666543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.1e-19  Score=155.76  Aligned_cols=183  Identities=20%  Similarity=0.120  Sum_probs=132.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      ++|||||+|.||++++++|+++|++|++++|................ ..++.++++|++|.+.+.+++++.     ++|
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~-----~~d   75 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDH-----AID   75 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHT-----TCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHhcc-----CCC
Confidence            59999999999999999999999999999874333222222222211 447899999999999999999975     699


Q ss_pred             EEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCccc
Q 025275          111 ILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES  190 (255)
Q Consensus       111 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~~  190 (255)
                      +|||+|+....  ..+.++..+.+++|+.|+.++++++...-.+         ++|++||...+...+.   .....+..
T Consensus        76 ~ViHlAa~~~~--~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~---------~~i~~Ss~~vy~~~~~---~~~~e~~~  141 (338)
T d1udca_          76 TVIHFAGLKAV--GESVQKPLEYYDNNVNGTLRLISAMRAANVK---------NFIFSSSATVYGDQPK---IPYVESFP  141 (338)
T ss_dssp             EEEECCSCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC---------EEEEEEEGGGGCSCCS---SSBCTTSC
T ss_pred             EEEECCCccch--hhHHhCHHHHHHhHHHHHHHHHHHHHHhCCC---------EEEecCcceEEccccc---cccccccc
Confidence            99999985321  1233456688999999999999998865433         8999998765532221   11122222


Q ss_pred             CCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          191 AYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       191 ~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      ...+...|+.+|.+.+.+++....+..  +  +.+..++|+.+.++.
T Consensus       142 ~~~p~~~Y~~sK~~~e~~~~~~~~~~~--~--~~~~ilR~~~v~G~~  184 (338)
T d1udca_         142 TGTPQSPYGKSKLMVEQILTDLQKAQP--D--WSIALLRYFNPVGAH  184 (338)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHST--T--CEEEEEEECEEECCC
T ss_pred             cCCCcchHHHHHhhhhHHHHHHHhhcc--C--CeEEEEeeccEEecc
Confidence            344677899999998888876665543  3  666668888888763

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=8.9e-19  Score=152.88  Aligned_cols=189  Identities=13%  Similarity=0.077  Sum_probs=134.2

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec----------------cchHHHHHHHHHhhCCCCceEEEEeCCCCH
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRN----------------MAAGKDVREAIVKEIPSAKVDAMELDVSSL   92 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~----------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   92 (255)
                      ||+||||||+|.||.+++++|+++|++|+++|.-                .....+....+.... +.++.++++|++|.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~Dl~d~   79 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGDICDF   79 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESCTTSH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhc-CCCcEEEEccCCCH
Confidence            6899999999999999999999999999998721                112233333333322 45789999999999


Q ss_pred             HHHHHHHHHHhcCCCCeeEEEEccCCCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCC
Q 025275           93 ASVRKFASEYNSQGRPLNILINNAGIMASP-FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSE  171 (255)
Q Consensus        93 ~si~~~~~~~~~~~g~id~lv~~ag~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~  171 (255)
                      +.++.+++..     .+|+|+|.|+..... ...+.+...+.+++|+.|+.+++.++...-.+        .++++.||.
T Consensus        80 ~~l~~~~~~~-----~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~--------~~~i~~ss~  146 (393)
T d1i24a_          80 EFLAESFKSF-----EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEE--------CHLVKLGTM  146 (393)
T ss_dssp             HHHHHHHHHH-----CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTT--------CEEEEECCG
T ss_pred             HHHHHHHHhh-----cchheeccccccccccccccccccccccccccccccHHHHHHHHhccc--------cceeecccc
Confidence            9999999987     699999999875432 23466777888999999999999988755433        356666665


Q ss_pred             ccccccccC---ccCCC-------CCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          172 AHRFAYSEG---IRFDK-------INDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       172 ~~~~~~~~~---~~~~~-------~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .... ....   ..+..       .+...+..+...|+.+|.+.+.+++.++.++.     +.+..+.|+.+..+.
T Consensus       147 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~-----l~~~~lR~~~v~G~~  216 (393)
T d1i24a_         147 GEYG-TPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG-----IRATDLNQGVVYGVK  216 (393)
T ss_dssp             GGGC-CCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHC-----CEEEEEEECEEECSC
T ss_pred             cccc-ccccccccccccccccccccccccccccccHHHHHhhhhcccccccccccc-----eeeeecccccccCCC
Confidence            4332 2110   00000       01112334556799999999988887766553     778889999888864

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.79  E-value=2.1e-19  Score=155.56  Aligned_cols=194  Identities=13%  Similarity=0.150  Sum_probs=136.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEE-EEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIM-AVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +||||||+|.||.+++++|++.|++|++ +++.....  ..+.+.......++.++.+|++|.+.++.+++..     .+
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-----~~   74 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAG--NLESLSDISESNRYNFEHADICDSAEITRIFEQY-----QP   74 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTC--CGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccc--cHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhC-----CC
Confidence            5899999999999999999999998554 44322111  0112222223458999999999999999999876     69


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc------CccC
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE------GIRF  183 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~------~~~~  183 (255)
                      |+|||+|+.....  .+.++..+.+++|+.|+.++++++...............++|++||...+.....      ..+.
T Consensus        75 d~VihlAa~~~~~--~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~  152 (361)
T d1kewa_          75 DAVMHLAAESHVD--RSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTL  152 (361)
T ss_dssp             SEEEECCSCCCHH--HHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCC
T ss_pred             CEEEECccccchh--hHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCC
Confidence            9999999864321  2334556789999999999999998876431000012348999999775542221      1111


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      +...+.++..+...|+.+|.+.+.+++.++..+   +  +.+..++|+.+..|..
T Consensus       153 ~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~---~--i~~~~lR~~~vyGp~~  202 (361)
T d1kewa_         153 PLFTETTAYAPSSPYSASKASSDHLVRAWRRTY---G--LPTIVTNCSNNYGPYH  202 (361)
T ss_dssp             CCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CCEEEEEECEEESTTC
T ss_pred             CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---C--CCEEEEecCceECcCC
Confidence            122334455677889999999999988887655   3  7777799999888753

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8e-19  Score=150.37  Aligned_cols=184  Identities=14%  Similarity=0.061  Sum_probs=132.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch-----HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA-----GKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |+||||||+|.||.+++++|.++|++|+.++|....     ++......... ...++.++.+|++|.+.+..++++.  
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~--   78 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAH-IEGNMKLHYGDLTDSTCLVKIINEV--   78 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC----------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhh-ccCCcEEEEeecCCchhhHHHHhhc--
Confidence            445999999999999999999999999999996432     22221121111 1347899999999999999999886  


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                         .+++++|+++....  ..+.+.....+++|+.|+.+++.++......      +..++|++||.+.+ +.++.   .
T Consensus        79 ---~~~~v~~~~a~~~~--~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~------~~~~~i~~SS~~vy-g~~~~---~  143 (347)
T d1t2aa_          79 ---KPTEIYNLGAQSHV--KISFDLAEYTADVDGVGTLRLLDAVKTCGLI------NSVKFYQASTSELY-GKVQE---I  143 (347)
T ss_dssp             ---CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCT------TTCEEEEEEEGGGT-CSCSS---S
T ss_pred             ---ccceeeeeeecccc--chhhccchhhhhhHHHHHHHHHHHHHHcCCC------CCcEEEEecchhee-cCCCC---C
Confidence               68899999885322  1234455667899999999999888655432      23589999986643 32322   2


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      +++++.+..+...|+.||.+.+.+++.++..+.     +.+..++|+.+..|
T Consensus       144 ~~~E~~~~~P~~~Yg~sK~~aE~~~~~~~~~~~-----~~~~ilr~~~vyGp  190 (347)
T d1t2aa_         144 PQKETTPFYPRSPYGAAKLYAYWIVVNFREAYN-----LFAVNGILFNHESP  190 (347)
T ss_dssp             SBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC-----CEEEEEEECCEECT
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC-----CCEEEEEecceeCC
Confidence            455666777778999999999988888766553     56666888877776

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.79  E-value=3.7e-19  Score=152.77  Aligned_cols=189  Identities=16%  Similarity=0.110  Sum_probs=135.0

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .+||+||||||+|.||.+++++|+++|++|+.+.|+.++.....+.............+..|++|.+++..++.      
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------   82 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK------   82 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT------
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc------
Confidence            35899999999999999999999999999999999877665555444444334455667789999987776664      


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC--
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD--  184 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~--  184 (255)
                       .+|+++|+++....  ..+   ....++.|+.|+.++++.+....        ...++|++||..+........+..  
T Consensus        83 -~~~~v~~~a~~~~~--~~~---~~~~~~~nv~gt~~ll~~~~~~~--------~v~~~i~~SS~~~~~~~~~~~~~~~~  148 (342)
T d1y1pa1          83 -GAAGVAHIASVVSF--SNK---YDEVVTPAIGGTLNALRAAAATP--------SVKRFVLTSSTVSALIPKPNVEGIYL  148 (342)
T ss_dssp             -TCSEEEECCCCCSC--CSC---HHHHHHHHHHHHHHHHHHHHTCT--------TCCEEEEECCGGGTCCCCTTCCCCEE
T ss_pred             -cchhhhhhcccccc--ccc---ccccccchhhhHHHHHHhhhccc--------ccccccccccceeeccCCCCCCCccc
Confidence             58999999986432  222   34567889999999998876532        235999999976544222111000  


Q ss_pred             --------------CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          185 --------------KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       185 --------------~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                                    .+.+..+..+...|+.+|.+.+.+++.++.....   ++++..++|+.+..|..
T Consensus       149 ~e~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~---~~~~~~i~p~~v~Gp~~  213 (342)
T d1y1pa1         149 DEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKP---HFTLNAVLPNYTIGTIF  213 (342)
T ss_dssp             CTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCC---SSEEEEEEESEEECCCS
T ss_pred             cccccccccccccccccccCCCCCcCcccchhHhHHHHHHHhhhhccc---ccccceecccceeCCCC
Confidence                          1122333445567999999999888887776542   37888899998877643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.78  E-value=2.4e-21  Score=153.58  Aligned_cols=114  Identities=17%  Similarity=0.211  Sum_probs=96.7

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ...+++||++|||||+||||++++++|+++|++|++++|+.+++++..+++...   .++....+|++|.+++++++.  
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~--   91 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAVK--   91 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHTT--
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc---cchhhhhhhcccHHHHHHHhc--
Confidence            467899999999999999999999999999999999999999999999888764   245678899999998887654  


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLL  148 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~  148 (255)
                           ++|+||||||..  +...+.+.|.+.+++|+.+.++.+..+
T Consensus        92 -----~iDilin~Ag~g--~~~~~~e~~~~~~~~nv~~~~~~~~~~  130 (191)
T d1luaa1          92 -----GAHFVFTAGAIG--LELLPQAAWQNESSIEIVADYNAQPPL  130 (191)
T ss_dssp             -----TCSEEEECCCTT--CCCBCHHHHHTCTTCCEEEECCCSSSC
T ss_pred             -----CcCeeeecCccc--cccCCHHHHHhhhcceeehhHhhHHHH
Confidence                 689999999963  344688899999999887777655433

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.78  E-value=5.1e-18  Score=144.73  Aligned_cols=186  Identities=13%  Similarity=0.058  Sum_probs=135.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc-----hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-----AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |++|||||+|.||++++++|+++|++|+.++|...     +.......... .....+.++.+|+++.+++...++..  
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Di~~~~~~~~~~~~~--   78 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHN-VNKALMKLHYADLTDASSLRRWIDVI--   78 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH--
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhh-ccccceEEEEccccCHHHHHHHHhhh--
Confidence            89999999999999999999999999999998532     21111111111 11346889999999999999999876  


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                         ++|+|+|+|+....  ..+.+.....+..|+.++.+++.++.....+.    ....+++..||......     ...
T Consensus        79 ---~~D~Vih~Aa~~~~--~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~----~~~~~~~~~ss~~~~~~-----~~~  144 (339)
T d1n7ha_          79 ---KPDEVYNLAAQSHV--AVSFEIPDYTADVVATGALRLLEAVRSHTIDS----GRTVKYYQAGSSEMFGS-----TPP  144 (339)
T ss_dssp             ---CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHH----CCCCEEEEEEEGGGGTT-----SCS
T ss_pred             ---ccchhhhccccccc--cccccCccccccccccccchhhhhhhhccccc----ccceeeeecccceeccc-----CCC
Confidence               79999999986432  23345667889999999999999988766552    22335555555443221     112


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .++++.+..+...|+.+|.+.+.++..+...+   +  +.+..++|+.+..|.
T Consensus       145 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~ilR~~~vyGp~  192 (339)
T d1n7ha_         145 PQSETTPFHPRSPYAASKCAAHWYTVNYREAY---G--LFACNGILFNHESPR  192 (339)
T ss_dssp             SBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECCEECTT
T ss_pred             CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHh---C--CCEEEEEEccccCCC
Confidence            35566677788899999999888888777655   3  778889999888874

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=3.3e-18  Score=144.90  Aligned_cols=182  Identities=16%  Similarity=0.108  Sum_probs=132.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |+||||||+|.||++++++|+++|++|+.++|......  .+.+.......++.++.+|++|.+.+...+...     .+
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~--~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~~   73 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT--RWRLRELGIEGDIQYEDGDMADACSVQRAVIKA-----QP   73 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCC--CHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCccc--HHHHHHhcccCCcEEEEccccChHHhhhhhccc-----cc
Confidence            78999999999999999999999999999998764321  122222222457899999999999999998886     57


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      ++++++++.....  ...+...+.++.|+.|+.+++.++...-.+        .++++.||.. +++...   ....+++
T Consensus        74 ~~~~~~a~~~~~~--~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~--------~~~i~~Ss~~-~~~~~~---~~~~~E~  139 (321)
T d1rpna_          74 QEVYNLAAQSFVG--ASWNQPVTTGVVDGLGVTHLLEAIRQFSPE--------TRFYQASTSE-MFGLIQ---AERQDEN  139 (321)
T ss_dssp             SEEEECCSCCCHH--HHTTSHHHHHHHHTHHHHHHHHHHHHHCTT--------SEEEEEEEGG-GGCSCS---SSSBCTT
T ss_pred             ccccccccccccc--ccccchHHHHhhhhhchHHHHHHHHHhCCC--------cccccccchh-hcCccc---CCCCCCC
Confidence            8888888754321  122345678999999999999888654433        3566666544 443222   2334566


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      ++..+...|+.+|.+.+.+++.++..+.     +.+..+.|+.+..|.
T Consensus       140 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~-----~~~~~lr~~~vyGp~  182 (321)
T d1rpna_         140 TPFYPRSPYGVAKLYGHWITVNYRESFG-----LHASSGILFNHESPL  182 (321)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHHC-----CCEEEEEECCEECTT
T ss_pred             CCccccChhHHHHHHHHHHHHHHHhhcC-----CcEEEEEEecccCCC
Confidence            6777888999999999888888876654     666668888777764

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.76  E-value=8e-18  Score=144.03  Aligned_cols=184  Identities=12%  Similarity=0.049  Sum_probs=136.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC---CCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP---SAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +-|++|||||+|.||++++++|.++|++|++++|....-....+.+.....   ..++.++.+|+.|.........    
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~----   90 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA----   90 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT----
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccc----
Confidence            348999999999999999999999999999998744333333333332211   2468999999999887665544    


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                         .++.++|.++....  ..+.++....+++|+.|+.++++++...-         ..++|++||...+.. ..   ..
T Consensus        91 ---~~~~v~~~~a~~~~--~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~---------~~~~i~~SS~~vyg~-~~---~~  152 (341)
T d1sb8a_          91 ---GVDYVLHQAALGSV--PRSINDPITSNATNIDGFLNMLIAARDAK---------VQSFTYAASSSTYGD-HP---GL  152 (341)
T ss_dssp             ---TCSEEEECCSCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHTT---------CSEEEEEEEGGGGTT-CC---CS
T ss_pred             ---cccccccccccccc--cccccCccchhheeehhHHHHHHHHHhcC---------CceEEEcccceeeCC-CC---CC
Confidence               57888888875322  13456777889999999999998886443         239999999886542 22   22


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      +++++.+..+...|+.+|.+.+.+++.++....     +++..++|+.+.++..
T Consensus       153 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~-----i~~~ilR~~~v~G~~~  201 (341)
T d1sb8a_         153 PKVEDTIGKPLSPYAVTKYVNELYADVFSRCYG-----FSTIGLRYFNVFGRRQ  201 (341)
T ss_dssp             SBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHHC-----CCCEEEEECCEECTTC
T ss_pred             CccCCCCCCCCCcchHHHHHHHHHHHHHHHHhC-----CCeEEEEeceeeccCc
Confidence            456677777888999999999999888876653     6666788988887643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.76  E-value=1.1e-17  Score=143.43  Aligned_cols=188  Identities=15%  Similarity=0.108  Sum_probs=138.7

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .+||+||||||+|.||.+++++|+++|++|++++|+..+.....+....   ...+.++.+|++|++.+..+++..    
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~---~~~i~~~~~Dl~d~~~l~~~~~~~----   78 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREF----   78 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHH----
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhc---ccCCeEEEeeccChHhhhhhhhhc----
Confidence            4789999999999999999999999999999999988765544433321   346899999999999999999876    


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                       .+|+++|+|+....  ..+.+.....+++|+.|+.++++++...-.        ...+++.|+......   .....+.
T Consensus        79 -~~~~v~~~aa~~~~--~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~--------~~~~~~~s~~~~~~~---~~~~~~~  144 (356)
T d1rkxa_          79 -QPEIVFHMAAQPLV--RLSYSEPVETYSTNVMGTVYLLEAIRHVGG--------VKAVVNITSDKCYDN---KEWIWGY  144 (356)
T ss_dssp             -CCSEEEECCSCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHHCC--------CCEEEEECCGGGBCC---CCSSSCB
T ss_pred             -hhhhhhhhhccccc--cccccCCccccccccccchhhhhhhhcccc--------ccccccccccccccc---ccccccc
Confidence             78999999986432  123456677899999999999988875432        235555554433322   1222234


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHh------hCCCcEEEEEeeCCceecCc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLK------EDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~------~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .+..+..+...|+.+|...+.+++.++.++.      ..+  +.+..+.|+.+..|-
T Consensus       145 ~~~~~~~p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~vyGp~  199 (356)
T d1rkxa_         145 RENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHG--TAVATVRAGNVIGGG  199 (356)
T ss_dssp             CTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHC--CEEEEEECCCEECTT
T ss_pred             ccccccCCCCccccccccchhhhhHHhhhcccchhccccC--ceEEeccCCCeeCCC
Confidence            4455556677899999999999988887653      234  677778888877653

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.6e-17  Score=140.45  Aligned_cols=167  Identities=13%  Similarity=0.091  Sum_probs=123.3

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      .|+||||||+|.||++|+++|+++|+.|+++++..                      .+|+.+.+.+..+++..     .
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~----------------------~~~~~~~~~~~~~~~~~-----~   54 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASE-----R   54 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch----------------------hccccCHHHHHHHHhhc-----C
Confidence            47899999999999999999999999988765432                      15899999999888764     6


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC--CC
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD--KI  186 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~--~~  186 (255)
                      +|+++|+|+..... ........+.+++|+.++.++++++...-.         .++|++||.+.+. .....+.+  ..
T Consensus        55 ~d~v~~~a~~~~~~-~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v---------~~~i~~SS~~vyg-~~~~~~~~E~~~  123 (315)
T d1e6ua_          55 IDQVYLAAAKVGGI-VANNTYPADFIYQNMMIESNIIHAAHQNDV---------NKLLFLGSSCIYP-KLAKQPMAESEL  123 (315)
T ss_dssp             CSEEEECCCCCCCH-HHHHHCHHHHHHHHHHHHHHHHHHHHHTTC---------CEEEEECCGGGSC-TTCCSSBCGGGT
T ss_pred             CCEEEEcchhcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHcCC---------CEEEEECCceEcC-CCCCCCccCCcc
Confidence            89999999764321 123445566788999999999988865432         3899999987654 22222222  12


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .+..+.++...|+.+|.+.+.+++.+..+.   |  +++..+.|+.+..|..
T Consensus       124 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---g--l~~~ilR~~~vyGp~~  170 (315)
T d1e6ua_         124 LQGTLEPTNEPYAIAKIAGIKLCESYNRQY---G--RDYRSVMPTNLYGPHD  170 (315)
T ss_dssp             TSSCCCGGGHHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECEEESTTC
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---C--CCEEEEeeccEECCCC
Confidence            222333445679999999999988887666   3  7788899999988753

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.7e-17  Score=139.35  Aligned_cols=183  Identities=16%  Similarity=0.077  Sum_probs=128.2

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEe------ccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVR------NMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      |+||||||+|.||.+++++|+++|++|+++++      ......+..+.+.... +.++.++++|++|.+.++.++... 
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~-   80 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKKY-   80 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHHC-
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhc-CCCcEEEEeecccccccccccccc-
Confidence            78999999999999999999999999999874      2222223333333221 457899999999999999988864 


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                          .+++++|+|+....  ..+.+...+.+++|+.|+.++++++...-.         .++|++||...+......   
T Consensus        81 ----~~~~i~h~Aa~~~~--~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v---------~~~i~~ss~~~~~~~~~~---  142 (346)
T d1ek6a_          81 ----SFMAVIHFAGLKAV--GESVQKPLDYYRVNLTGTIQLLEIMKAHGV---------KNLVFSSSATVYGNPQYL---  142 (346)
T ss_dssp             ----CEEEEEECCSCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHHHTTC---------CEEEEEEEGGGGCSCSSS---
T ss_pred             ----ccccccccccccCc--HhhHhCHHHHHHhhhcccccccchhhhcCc---------ccccccccceeeeccccc---
Confidence                68999999996542  123345567899999999999988764332         389998887755432211   


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecC
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTN  236 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~  236 (255)
                      ..........+...|+.+|...+...+.++...  .+  +....+.|+.+.++
T Consensus       143 ~~~~~~~~~~~~~~Y~~~k~~~e~~~~~~~~~~--~~--~~~~~lR~~~v~G~  191 (346)
T d1ek6a_         143 PLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQAD--KT--WNAVLLRYFNPTGA  191 (346)
T ss_dssp             SBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHC--TT--CEEEEEEECEEECC
T ss_pred             cccccccccccCChHHHHHHHHHHHHHHHHHhc--cC--CceEEEeecceecc
Confidence            111122222345679999988887776654322  23  66777888877765

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.73  E-value=1e-16  Score=136.07  Aligned_cols=169  Identities=17%  Similarity=0.176  Sum_probs=121.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc-hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMA-AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +||||||+|.||++++++|+++|++|+++++-.. ...+..+.+..   ..++.++.+|++|.+++..+++..     .+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~---~~~~~~i~~Di~~~~~l~~~~~~~-----~~   73 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITKY-----MP   73 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc---cCCcEEEEcccCCHHHHHHHHHhc-----CC
Confidence            5899999999999999999999999999875332 22233333332   347899999999999999999977     68


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC------
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF------  183 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~------  183 (255)
                      |++||+|+.....  ...++..+.+++|+.|+.++++++...-.+         +.|+.||.......+...+.      
T Consensus        74 d~Vih~aa~~~~~--~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~---------~~i~~sS~~~~~~~~~~~~~~~~~~~  142 (338)
T d1orra_          74 DSCFHLAGQVAMT--TSIDNPCMDFEINVGGTLNLLEAVRQYNSN---------CNIIYSSTNKVYGDLEQYKYNETETR  142 (338)
T ss_dssp             SEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHCTT---------CEEEEEEEGGGGTTCTTSCEEECSSC
T ss_pred             ceEEeeccccccc--ccccChHHHHHHHHHHHHHHHHhhhccccc---------cccccccccccccccccccccccccc
Confidence            9999999864321  223456788999999999999887654332         56666665555443322111      


Q ss_pred             -------CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhh
Q 025275          184 -------DKINDESAYNSFGAYGQSKLANILHAKELAKHLKE  218 (255)
Q Consensus       184 -------~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~  218 (255)
                             ..........+...|+.+|...+.+.......+..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~~  184 (338)
T d1orra_         143 YTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGL  184 (338)
T ss_dssp             EEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccCcccCCccccccccccccchhhhhhhhhhhccCc
Confidence                   12223444556788999999988888888777753

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.6e-17  Score=140.79  Aligned_cols=176  Identities=14%  Similarity=0.072  Sum_probs=121.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |+||||||+|.||++++++|+++|++|+++++......+....+   ....++.....|+.+.            .+..+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~------------~~~~~   66 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW---IGHENFELINHDVVEP------------LYIEV   66 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG---TTCTTEEEEECCTTSC------------CCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHh---cCCCceEEEehHHHHH------------HHcCC
Confidence            78999999999999999999999999999987433221111111   1133555666555432            22369


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC--CCC
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD--KIN  187 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~--~~~  187 (255)
                      |+|||+|+.....  .+.++..+.+++|+.++.++++++...          +.++|++||.+.+. .+...+..  .+.
T Consensus        67 d~VihlAa~~~~~--~~~~~~~~~~~~Nv~g~~~ll~~~~~~----------~~k~I~~SS~~vy~-~~~~~~~~e~~~~  133 (312)
T d2b69a1          67 DQIYHLASPASPP--NYMYNPIKTLKTNTIGTLNMLGLAKRV----------GARLLLASTSEVYG-DPEVHPQSEDYWG  133 (312)
T ss_dssp             SEEEECCSCCSHH--HHTTCHHHHHHHHHHHHHHHHHHHHHH----------TCEEEEEEEGGGGB-SCSSSSBCTTCCC
T ss_pred             CEEEECcccCCch--hHHhCHHHHHHHHHHHHHHHHHHHHHc----------CCcEEEEEChheec-CCCCCCCCccccC
Confidence            9999999864321  112345677899999999999887532          23899999965543 33332222  233


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      +.++..+...|+.+|.+.+.+++.++..+   |  +.+..++|+.+..|..
T Consensus       134 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~~lR~~~vyGp~~  179 (312)
T d2b69a1         134 HVNPIGPRACYDEGKRVAETMCYAYMKQE---G--VEVRVARIFNTFGPRM  179 (312)
T ss_dssp             BCCSSSTTHHHHHHHHHHHHHHHHHHHHH---C--CCEEEEEECCEECTTC
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHHh---C--CcEEEEEeeeEECCCC
Confidence            34455677889999999999888887765   3  7777899999998753

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.72  E-value=2.1e-17  Score=141.76  Aligned_cols=183  Identities=19%  Similarity=0.151  Sum_probs=127.3

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |.||||||+|.||.+++++|.++|++|.+++++...-......+.. ..+.++.++.+|++|.+.+..++.       ..
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~-~~~~~i~~~~~Di~d~~~~~~~~~-------~~   74 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEA-ILGDRVELVVGDIADAELVDKLAA-------KA   74 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGG-GCSSSEEEEECCTTCHHHHHHHHT-------TC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHH-hhcCCeEEEEccCCCHHHHHHHHh-------hh
Confidence            7899999999999999999999998765555432110000011111 124589999999999999888876       47


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCcccccccc--------Cc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSE--------GI  181 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~--------~~  181 (255)
                      +.++|.|+.....  ....+..+.+++|+.|+.+++.++....          .++|++||...+...+.        ..
T Consensus        75 ~~v~~~a~~~~~~--~~~~~~~~~~~~N~~g~~nll~~~~~~~----------~k~i~~ss~~vyg~~~~~~~~~~~~~~  142 (346)
T d1oc2a_          75 DAIVHYAAESHND--NSLNDPSPFIHTNFIGTYTLLEAARKYD----------IRFHHVSTDEVYGDLPLREDLPGHGEG  142 (346)
T ss_dssp             SEEEECCSCCCHH--HHHHCCHHHHHHHTHHHHHHHHHHHHHT----------CEEEEEEEGGGGCCBCCGGGSTTTTCS
T ss_pred             hhhhhhhhccccc--chhhCcccceeeehHhHHhhhhhhcccc----------ccccccccceEecccCccccccccccC
Confidence            8899999764321  1223445778999999999998775333          27788877765432211        11


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      +...+.+..+..+...|+.+|.+.+.+++.+..++   +  +++..+.|+.+..|.
T Consensus       143 ~~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~---~--i~~~ilR~~~vyGp~  193 (346)
T d1oc2a_         143 PGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF---G--VKATISNCSNNYGPY  193 (346)
T ss_dssp             TTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECCEESTT
T ss_pred             cccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHc---C--CCEEEEeecceeCCC
Confidence            12244445566667889999999999888887665   3  888889999998864

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.71  E-value=2.2e-16  Score=137.13  Aligned_cols=190  Identities=16%  Similarity=0.119  Sum_probs=135.1

Q ss_pred             CcEEEEecCCCchHHHHHHHHHH-cCCeEEEEEe---------ccchHHHHHHHHHhh------CCCCceEEEEeCCCCH
Q 025275           29 GLTAIVTGASSGIGTETARVLAL-RGVHVIMAVR---------NMAAGKDVREAIVKE------IPSAKVDAMELDVSSL   92 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~-~G~~Vi~~~r---------~~~~~~~~~~~~~~~------~~~~~~~~~~~Dl~~~   92 (255)
                      +++||||||+|.||.+++++|++ .|++|+++|+         ..+........+...      ..+..+.++.+|++|.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~   81 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence            45799999999999999999986 6889999874         222333333333322      1134688999999999


Q ss_pred             HHHHHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           93 ASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        93 ~si~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      +.+++++++.    .++|+|+|+|+.....  ...+.....+++|+.++.+++.++.....         .++++++|..
T Consensus        82 ~~l~~~~~~~----~~~d~ViH~Aa~~~~~--~~~~~~~~~~~~N~~~t~~~l~~~~~~~~---------~~~~~~~s~~  146 (383)
T d1gy8a_          82 DFLNGVFTRH----GPIDAVVHMCAFLAVG--ESVRDPLKYYDNNVVGILRLLQAMLLHKC---------DKIIFSSSAA  146 (383)
T ss_dssp             HHHHHHHHHS----CCCCEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHHHTTC---------CEEEEEEEGG
T ss_pred             HHhhhhhhcc----ceeehhhccccccccc--ccccccccccccccccccccchhhhccCC---------cccccccccc
Confidence            9999999864    4689999999864321  23345567789999999999988874433         3777777766


Q ss_pred             ccccccc---CccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          173 HRFAYSE---GIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       173 ~~~~~~~---~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .+.....   .....++.++.+..+...|+.+|.+.+.+++.+...+.     +.+.+++|+.+..+..
T Consensus       147 ~~~~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~g-----l~~~~lR~~~vyG~~~  210 (383)
T d1gy8a_         147 IFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYG-----IKGICLRYFNACGAHE  210 (383)
T ss_dssp             GTBSCCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHC-----CEEEEEEECEEECCCT
T ss_pred             cccccccccccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhC-----CCEEEEecceeeccCc
Confidence            5442221   11122455556667788999999998888877766553     7778899998887653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=9.1e-17  Score=138.42  Aligned_cols=179  Identities=20%  Similarity=0.129  Sum_probs=129.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++++||||||+|.||.+|+++|.++|++|+++++......      ...  .....+..+|+++.+.+..+++       
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~------~~~--~~~~~~~~~D~~~~~~~~~~~~-------   78 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM------TED--MFCDEFHLVDLRVMENCLKVTE-------   78 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSS------CGG--GTCSEEEECCTTSHHHHHHHHT-------
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccch------hhh--cccCcEEEeechhHHHHHHHhh-------
Confidence            5677999999999999999999999999999987644310      000  1245788889999887776665       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC---
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD---  184 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~---  184 (255)
                      .+|++||+|+...... ...+.....+..|+.++.+++.++...-.+         ++|++||...+.... ..+..   
T Consensus        79 ~~d~Vih~a~~~~~~~-~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk---------~~i~~SS~~~~~~~~-~~~~~~~~  147 (363)
T d2c5aa1          79 GVDHVFNLAADMGGMG-FIQSNHSVIMYNNTMISFNMIEAARINGIK---------RFFYASSACIYPEFK-QLETTNVS  147 (363)
T ss_dssp             TCSEEEECCCCCCCHH-HHTTCHHHHHHHHHHHHHHHHHHHHHTTCS---------EEEEEEEGGGSCGGG-SSSSSSCE
T ss_pred             cCCeEeeccccccccc-ccccccccccccccchhhHHHHhHHhhCcc---------ccccccccccccccc-cccccccc
Confidence            5899999998653321 223456677899999999999888755433         899999977554322 11111   


Q ss_pred             -CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          185 -KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       185 -~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                       ...+..+..+...|+.+|.+.+.+++.+..++   +  +.+..++|+.+..+.
T Consensus       148 ~~~~e~~~~~p~~~Yg~sK~~~E~~~~~~~~~~---g--l~~~ilR~~~vyG~~  196 (363)
T d2c5aa1         148 LKESDAWPAEPQDAFGLEKLATEELCKHYNKDF---G--IECRIGRFHNIYGPF  196 (363)
T ss_dssp             ECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH---C--CEEEEEEECCEECTT
T ss_pred             cccccCCcCCCCCHHHHHHHHHHHHHHHHHHHh---C--CCEEEEEeeeEeccC
Confidence             12233344556789999999888888777665   3  778889999998864

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.5e-16  Score=135.87  Aligned_cols=178  Identities=11%  Similarity=0.005  Sum_probs=123.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           31 TAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +||||||+|.||++++++|+++| .+|+++++.........       ...++.++++|+++.+++.+.+.+      .+
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~-------~~~~~~~i~~Di~~~~~~~~~~~~------~~   68 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------NHPHFHFVEGDISIHSEWIEYHVK------KC   68 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-------TCTTEEEEECCTTTCSHHHHHHHH------HC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc-------cCCCeEEEECccCChHHHHHHHHh------CC
Confidence            59999999999999999999999 58999988655432221       145799999999987666554332      48


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc---cCCCC
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI---RFDKI  186 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~---~~~~~  186 (255)
                      |+|||+|+.....  ...+...+.+++|+.|+.++++++...          +.+++++||...+.......   .....
T Consensus        69 d~Vih~a~~~~~~--~~~~~~~~~~~~nv~gt~~ll~~~~~~----------~~~~~~~ss~~~~~~~~~~~~~~~~~~~  136 (342)
T d2blla1          69 DVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCVKY----------RKRIIFPSTSEVYGMCSDKYFDEDHSNL  136 (342)
T ss_dssp             SEEEECBCCCCHH--HHHHSHHHHHHHHTHHHHHHHHHHHHT----------TCEEEEECCGGGGBTCCCSSBCTTTCCC
T ss_pred             Ccccccccccccc--ccccCCccccccccccccccccccccc----------cccccccccccccccccccccccccccc
Confidence            9999999964322  223445677999999999999987533          23677777766555332211   11112


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      .......+...|+.+|.+.+.+++.++..+.     +.+..+.|..+..+..
T Consensus       137 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~-----~~~~i~r~~~~~g~~~  183 (342)
T d2blla1         137 IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG-----LQFTLFRPFNWMGPRL  183 (342)
T ss_dssp             BCCCTTCGGGHHHHHHHHHHHHHHHHHHHHC-----CCEEEEEECSEECSSC
T ss_pred             cccccCCCcchhhhcccchhhhhhhhhcccC-----ceeEEeeccccccccc
Confidence            2222334567899999999988888876663     5666678887777643

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.68  E-value=6.2e-17  Score=137.39  Aligned_cols=179  Identities=17%  Similarity=0.140  Sum_probs=126.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEE------EEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVI------MAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ++||||||+|.||++++++|+++|++|.      ..++......  ...+.......++.++..|.++.........   
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---   75 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN--RANLAPVDADPRLRFVHGDIRDAGLLARELR---   75 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC--GGGGGGGTTCTTEEEEECCTTCHHHHHHHTT---
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCcccc--HhHhhhhhcCCCeEEEEeccccchhhhcccc---
Confidence            3589999999999999999999997544      3332211100  0111111124579999999999887665443   


Q ss_pred             cCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccC
Q 025275          104 SQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRF  183 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~  183 (255)
                          .+|+++|+|+....  ........+.+++|+.++.++++++...-         ..++|++||...+.. ...   
T Consensus        76 ----~~d~vi~~a~~~~~--~~~~~~~~~~~~~N~~gt~~ll~~~~~~~---------~~~~I~~Ss~~~yg~-~~~---  136 (322)
T d1r6da_          76 ----GVDAIVHFAAESHV--DRSIAGASVFTETNVQGTQTLLQCAVDAG---------VGRVVHVSTNQVYGS-IDS---  136 (322)
T ss_dssp             ----TCCEEEECCSCCCH--HHHHHCCHHHHHHHTHHHHHHHHHHHHTT---------CCEEEEEEEGGGGCC-CSS---
T ss_pred             ----ccceEEeecccccc--cccccchHHHhhhhHHHHHHHHHHHHHcC---------CceEEEeecceeecC-CCC---
Confidence                68999999986432  12344556678999999999999886432         248999998765542 222   


Q ss_pred             CCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          184 DKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       184 ~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .++++..+..+...|+.+|.+.+.+++.++.+.   +  +.+..++|+.+..|.
T Consensus       137 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~~lR~~~vyGp~  185 (322)
T d1r6da_         137 GSWTESSPLEPNSPYAASKAGSDLVARAYHRTY---G--LDVRITRCCNNYGPY  185 (322)
T ss_dssp             SCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---C--CCEEEEEECEEECTT
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh---C--CCEEEEEeeeEECcC
Confidence            245566677778899999999999888887665   3  777789999998864

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.9e-16  Score=121.85  Aligned_cols=155  Identities=16%  Similarity=0.091  Sum_probs=104.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ..|+++||||||+||++++++|+++|++|.++.|+.+++...        ....+.++.+|++|.+++.++++       
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~gD~~d~~~l~~al~-------   66 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQAADVDKTVA-------   66 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSHHHHHHHHT-------
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc--------cccccccccccccchhhHHHHhc-------
Confidence            458899999999999999999999999999999998764221        13468899999999999888877       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCC
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN  187 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~  187 (255)
                      ++|+||+++|...+....         +++..++.++++++    +++     +-.++|++||.........        
T Consensus        67 ~~d~vi~~~g~~~~~~~~---------~~~~~~~~~l~~aa----~~~-----~v~r~i~~ss~~~~~~~~~--------  120 (205)
T d1hdoa_          67 GQDAVIVLLGTRNDLSPT---------TVMSEGARNIVAAM----KAH-----GVDKVVACTSAFLLWDPTK--------  120 (205)
T ss_dssp             TCSEEEECCCCTTCCSCC---------CHHHHHHHHHHHHH----HHH-----TCCEEEEECCGGGTSCTTC--------
T ss_pred             CCCEEEEEeccCCchhhh---------hhhHHHHHHHHHHH----Hhc-----CCCeEEEEeeeeccCCCcc--------
Confidence            579999999865432111         23344555555544    331     2348999998664431110        


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceec
Q 025275          188 DESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVT  235 (255)
Q Consensus       188 ~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t  235 (255)
                         .......|...|...+.       .+...+  ++...|.||.+..
T Consensus       121 ---~~~~~~~~~~~~~~~e~-------~l~~~~--~~~tiirp~~~~~  156 (205)
T d1hdoa_         121 ---VPPRLQAVTDDHIRMHK-------VLRESG--LKYVAVMPPHIGD  156 (205)
T ss_dssp             ---SCGGGHHHHHHHHHHHH-------HHHHTC--SEEEEECCSEEEC
T ss_pred             ---ccccccccchHHHHHHH-------HHHhcC--CceEEEecceecC
Confidence               11122345555544332       234456  7888899998754

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.7e-15  Score=119.20  Aligned_cols=161  Identities=16%  Similarity=0.051  Sum_probs=112.3

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      .+.+++|+||||||||.||++++++|+++|.  +|++++|++......      .  ...+....+|+.+.+++...++ 
T Consensus         9 ~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~------~--~~~i~~~~~D~~~~~~~~~~~~-   79 (232)
T d2bkaa1           9 DFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE------A--YKNVNQEVVDFEKLDDYASAFQ-   79 (232)
T ss_dssp             HHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG------G--GGGCEEEECCGGGGGGGGGGGS-
T ss_pred             HhCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc------c--cceeeeeeeccccccccccccc-
Confidence            3456789999999999999999999999995  799999986543210      1  2356777788887665544443 


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCc
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGI  181 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~  181 (255)
                            .+|+++|++|..     .......+..++|+.++.++++++...-         -.++|++|+.....      
T Consensus        80 ------~~d~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~---------v~~fi~~Ss~~~~~------  133 (232)
T d2bkaa1          80 ------GHDVGFCCLGTT-----RGKAGAEGFVRVDRDYVLKSAELAKAGG---------CKHFNLLSSKGADK------  133 (232)
T ss_dssp             ------SCSEEEECCCCC-----HHHHHHHHHHHHHTHHHHHHHHHHHHTT---------CCEEEEECCTTCCT------
T ss_pred             ------cccccccccccc-----ccccchhhhhhhcccccceeeecccccC---------ccccccCCcccccc------
Confidence                  689999999852     1233456678889999999888875322         34899999976432      


Q ss_pred             cCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          182 RFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       182 ~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                                 .....|+.+|...+...+    ++...    .+..++||.+..+..
T Consensus       134 -----------~~~~~Y~~~K~~~E~~l~----~~~~~----~~~IlRP~~i~G~~~  171 (232)
T d2bkaa1         134 -----------SSNFLYLQVKGEVEAKVE----ELKFD----RYSVFRPGVLLCDRQ  171 (232)
T ss_dssp             -----------TCSSHHHHHHHHHHHHHH----TTCCS----EEEEEECCEEECTTG
T ss_pred             -----------CccchhHHHHHHhhhccc----ccccc----ceEEecCceeecCCC
Confidence                       123569999976554332    22211    244489999988743

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.44  E-value=3e-13  Score=108.34  Aligned_cols=165  Identities=16%  Similarity=0.054  Sum_probs=104.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCe--EEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVH--VIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~--Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++||||||+|+||++++++|+++|+.  |+...|++++..       ..  ..++.++.+|+++.+++.++++       
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~-------~~--~~~~~~~~~d~~~~~~~~~~~~-------   67 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE-------KI--GGEADVFIGDITDADSINPAFQ-------   67 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH-------HT--TCCTTEEECCTTSHHHHHHHHT-------
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH-------hc--cCCcEEEEeeeccccccccccc-------
Confidence            79999999999999999999999975  555566654322       11  3468899999999998888776       


Q ss_pred             CeeEEEEccCCCCCC-----------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccc
Q 025275          108 PLNILINNAGIMASP-----------FMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFA  176 (255)
Q Consensus       108 ~id~lv~~ag~~~~~-----------~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~  176 (255)
                      .+|.+||+++.....           ............++|+.++.+++.......         .+...+.++......
T Consensus        68 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~~~~~~~  138 (252)
T d2q46a1          68 GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG---------VKHIVVVGSMGGTNP  138 (252)
T ss_dssp             TCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT---------CSEEEEEEETTTTCT
T ss_pred             cceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccc---------ccccccccccccCCC
Confidence            589999999865310           011123345567788999888876665443         347777776553321


Q ss_pred             cccCccCCCCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          177 YSEGIRFDKINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      ..          .........|...+..    ...   .....+  +++..++||.+..+..
T Consensus       139 ~~----------~~~~~~~~~~~~~~~~----~~~---~~~~~~--~~~~ilRp~~v~g~~~  181 (252)
T d2q46a1         139 DH----------PLNKLGNGNILVWKRK----AEQ---YLADSG--TPYTIIRAGGLLDKEG  181 (252)
T ss_dssp             TC----------GGGGGGGCCHHHHHHH----HHH---HHHHSS--SCEEEEEECEEECSCT
T ss_pred             Cc----------ccccccccchhhhhhh----hhh---hhhccc--ccceeecceEEECCCc
Confidence            00          0000111223333222    111   223345  7777899999988753

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=99.44  E-value=2.7e-13  Score=112.36  Aligned_cols=139  Identities=19%  Similarity=0.166  Sum_probs=98.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++|||||+|.||.+++++|.++|. ++.++++...                   +..|++|.+.+++++++.     .+
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~-------------------~~~Dl~~~~~~~~~i~~~-----~~   55 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKE-------------------FCGDFSNPKGVAETVRKL-----RP   55 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSS-------------------SCCCTTCHHHHHHHHHHH-----CC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCcc-------------------ccCcCCCHHHHHHHHHHc-----CC
Confidence            3599999999999999999999885 5555554321                   236999999999999887     69


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+||.....  .+.+.....++.|+.++.+++.++..          .+.+++++||...+. .....   +..+.
T Consensus        56 D~Vih~Aa~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~----------~~~~~~~~ss~~~~~-~~~~~---~~~E~  119 (298)
T d1n2sa_          56 DVIVNAAAHTAVD--KAESEPELAQLLNATSVEAIAKAANE----------TGAWVVHYSTDYVFP-GTGDI---PWQET  119 (298)
T ss_dssp             SEEEECCCCCCHH--HHTTCHHHHHHHHTHHHHHHHHHHTT----------TTCEEEEEEEGGGSC-CCTTC---CBCTT
T ss_pred             CEEEEeccccccc--ccccCccccccccccccccchhhhhc----------ccccccccccccccc-CCCCC---CCccc
Confidence            9999999965321  12334456788999999998887742          244778777765443 22222   33445


Q ss_pred             cCCCCccchHHhHHHHHHHH
Q 025275          190 SAYNSFGAYGQSKLANILHA  209 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~  209 (255)
                      .+..+...|+.+|.+.+.+.
T Consensus       120 ~~~~p~~~y~~~k~~~e~~~  139 (298)
T d1n2sa_         120 DATSPLNVYGKTKLAGEKAL  139 (298)
T ss_dssp             SCCCCSSHHHHHHHHHHHHH
T ss_pred             cccCCCchHhhhhhhhhhhH
Confidence            55567788999998766543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.43  E-value=8.3e-13  Score=108.72  Aligned_cols=155  Identities=24%  Similarity=0.281  Sum_probs=105.3

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      +++|||||||.||++++++|.++|++|+.++|+.                       +|++|.+++++++++.     .+
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~-----------------------~D~~d~~~~~~~l~~~-----~~   53 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD-----------------------LDITNVLAVNKFFNEK-----KP   53 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT-----------------------CCTTCHHHHHHHHHHH-----CC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh-----------------------ccCCCHHHHHHHHHHc-----CC
Confidence            3599999999999999999999999999998753                       4899999999999876     68


Q ss_pred             eEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCcc
Q 025275          110 NILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDE  189 (255)
Q Consensus       110 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~~  189 (255)
                      |+|||+|+....  ..+.......+..|+.....+...+....          ..+++.||... .......   +..+.
T Consensus        54 d~vih~a~~~~~--~~~~~~~~~~~~~n~~~~~~~~~~~~~~~----------~~~~~~ss~~v-~~~~~~~---~~~e~  117 (281)
T d1vl0a_          54 NVVINCAAHTAV--DKCEEQYDLAYKINAIGPKNLAAAAYSVG----------AEIVQISTDYV-FDGEAKE---PITEF  117 (281)
T ss_dssp             SEEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHHT----------CEEEEEEEGGG-SCSCCSS---CBCTT
T ss_pred             CEEEeecccccc--ccccccchhhccccccccccccccccccc----------cccccccccee-eeccccc---ccccc
Confidence            999999986432  12233445567777777776665554322          25666655443 3222222   23344


Q ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          190 SAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       190 ~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                      .+..+...|+.+|...+.+.+    +.   +  .....+.|+.+..+-
T Consensus       118 ~~~~~~~~~~~~k~~~e~~~~----~~---~--~~~~i~R~~~vyG~~  156 (281)
T d1vl0a_         118 DEVNPQSAYGKTKLEGENFVK----AL---N--PKYYIVRTAWLYGDG  156 (281)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHH----HH---C--SSEEEEEECSEESSS
T ss_pred             ccccchhhhhhhhhHHHHHHH----Hh---C--CCccccceeEEeCCC
Confidence            455567789999877654433    22   2  334458999887653

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.27  E-value=1.1e-11  Score=98.19  Aligned_cols=150  Identities=15%  Similarity=0.057  Sum_probs=97.6

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      -|++|||||||.||++++++|.++|.  +|+...|+...               ....+..++.|..++.   +   ...
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~---------------~~~~~~~~~~d~~~~~---~---~~~   60 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------------EHPRLDNPVGPLAELL---P---QLD   60 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------------CCTTEECCBSCHHHHG---G---GCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh---------------hcccccccccchhhhh---h---ccc
Confidence            38999999999999999999999997  56666665421               1112344555544322   1   224


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKI  186 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~  186 (255)
                      +.+|.+|+++|.....    ........+.|+.++.++++++...-         -.+++++||..+..           
T Consensus        61 ~~~d~vi~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~---------v~~~i~~Ss~~~~~-----------  116 (212)
T d2a35a1          61 GSIDTAFCCLGTTIKE----AGSEEAFRAVDFDLPLAVGKRALEMG---------ARHYLVVSALGADA-----------  116 (212)
T ss_dssp             SCCSEEEECCCCCHHH----HSSHHHHHHHHTHHHHHHHHHHHHTT---------CCEEEEECCTTCCT-----------
T ss_pred             cchheeeeeeeeeccc----cccccccccchhhhhhhccccccccc---------cccccccccccccc-----------
Confidence            5789999999864211    11234678889999999888764322         34899999876432           


Q ss_pred             CcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCc
Q 025275          187 NDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNL  237 (255)
Q Consensus       187 ~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~  237 (255)
                            .....|..+|...+...+       ..+. -++..++|+.+..+.
T Consensus       117 ------~~~~~y~~~K~~~E~~l~-------~~~~-~~~~I~Rp~~v~G~~  153 (212)
T d2a35a1         117 ------KSSIFYNRVKGELEQALQ-------EQGW-PQLTIARPSLLFGPR  153 (212)
T ss_dssp             ------TCSSHHHHHHHHHHHHHT-------TSCC-SEEEEEECCSEESTT
T ss_pred             ------ccccchhHHHHHHhhhcc-------cccc-ccceeeCCcceeCCc
Confidence                  134579999976554332       2231 134458999998764

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.8e-11  Score=101.43  Aligned_cols=171  Identities=14%  Similarity=0.076  Sum_probs=102.5

Q ss_pred             EEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh--cCCCC
Q 025275           32 AIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN--SQGRP  108 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~--~~~g~  108 (255)
                      ||||||+|.||.+++++|+++|. .|+++++-... .+.. .+..    .    ..+|..+.+.   ......  ..+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~-~~~~-~~~~----~----~~~~~~~~~~---~~~~~~~~~~~~~   68 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG-TKFV-NLVD----L----NIADYMDKED---FLIQIMAGEEFGD   68 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSG-GGGH-HHHT----S----CCSEEEEHHH---HHHHHHTTCCCSS
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCc-chhh-cccc----c----chhhhccchH---HHHHHhhhhcccc
Confidence            89999999999999999999997 58777643222 1111 1111    1    1122233322   222222  23467


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCCCCCc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIND  188 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~~~~~  188 (255)
                      +++++|.|+......    .......+.|+.++..+++++....          -++|+.||......+..    ....+
T Consensus        69 ~~~i~~~aa~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~----------i~~v~~ss~~~~~~~~~----~~~~~  130 (307)
T d1eq2a_          69 VEAIFHEGACSSTTE----WDGKYMMDNNYQYSKELLHYCLERE----------IPFLYASSAATYGGRTS----DFIES  130 (307)
T ss_dssp             CCEEEECCSCCCTTC----CCHHHHHHHTHHHHHHHHHHHHHHT----------CCEEEEEEGGGGTTCCS----CBCSS
T ss_pred             hhhhhhhcccccccc----ccccccccccccccccccccccccc----------ccccccccccccccccc----ccccc
Confidence            899999997543321    1334456778888888877655332          25666666555443221    12223


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCCceecCcc
Q 025275          189 ESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPGSIVTNLF  238 (255)
Q Consensus       189 ~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG~v~t~~~  238 (255)
                      ..+..+...|+.+|.+.+.+++.+....   +  +.+..+.|..+..|..
T Consensus       131 ~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~--~~~~~~r~~~vyGp~~  175 (307)
T d1eq2a_         131 REYEKPLNVYGYSKFLFDEYVRQILPEA---N--SQIVGFRYFNVYGPRE  175 (307)
T ss_dssp             GGGCCCSSHHHHHHHHHHHHHHHHGGGC---S--SCEEEEEECEEESSSC
T ss_pred             ccccccccccccccchhhhhcccccccc---c--cccccccceeEeeccc
Confidence            3445567889999988777776664433   3  5566688888887643

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.23  E-value=1.9e-11  Score=101.52  Aligned_cols=82  Identities=9%  Similarity=0.059  Sum_probs=62.5

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH-HHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV-REAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++||||||||.||++++++|+++|++|+++.|+....... .+.+... ....+.++++|++|.+++...+.       .
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~v~~v~~d~~d~~~~~~~~~-------~   75 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYF-KQLGAKLIEASLDDHQRLVDALK-------Q   75 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHH-HTTTCEEECCCSSCHHHHHHHHT-------T
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhh-ccCCcEEEEeecccchhhhhhcc-------C
Confidence            4699999999999999999999999999999976533211 1222111 13468999999999998887776       5


Q ss_pred             eeEEEEccCCC
Q 025275          109 LNILINNAGIM  119 (255)
Q Consensus       109 id~lv~~ag~~  119 (255)
                      .+.++++++..
T Consensus        76 ~~~~~~~~~~~   86 (312)
T d1qyda_          76 VDVVISALAGG   86 (312)
T ss_dssp             CSEEEECCCCS
T ss_pred             cchhhhhhhhc
Confidence            78888888753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.13  E-value=2.1e-10  Score=94.31  Aligned_cols=83  Identities=16%  Similarity=0.211  Sum_probs=64.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHH--HHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKD--VREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      +.|+||||||||.||++++++|++.|++|++++|+......  ..+.+.... ...+.++.+|+.+.......++     
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~-----   75 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVK-----   75 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHH-----
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhc-cCCcEEEEeecccchhhhhhhh-----
Confidence            35789999999999999999999999999999998654321  122222221 3467899999999988887776     


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                        ..+.++++++.
T Consensus        76 --~~~~vi~~~~~   86 (307)
T d1qyca_          76 --NVDVVISTVGS   86 (307)
T ss_dssp             --TCSEEEECCCG
T ss_pred             --hceeeeecccc
Confidence              47889998874

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=99.11  E-value=8.2e-10  Score=93.67  Aligned_cols=78  Identities=19%  Similarity=0.161  Sum_probs=59.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHH-HHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLAS-VRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s-i~~~~~~~~~~~  106 (255)
                      +.|+|+||||||.||.+++++|+++|++|+++.|+..+...  +.+..   ...+..++.|++|..+ ++.++.      
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~~---~~~v~~~~gD~~d~~~~~~~a~~------   70 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQA---IPNVTLFQGPLLNNVPLMDTLFE------   70 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHT---STTEEEEESCCTTCHHHHHHHHT------
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhcc---cCCCEEEEeeCCCcHHHHHHHhc------
Confidence            56899999999999999999999999999999998876432  22222   3468899999999654 444443      


Q ss_pred             CCeeEEEEccC
Q 025275          107 RPLNILINNAG  117 (255)
Q Consensus       107 g~id~lv~~ag  117 (255)
                       ..|.++.+..
T Consensus        71 -~~~~~~~~~~   80 (350)
T d1xgka_          71 -GAHLAFINTT   80 (350)
T ss_dssp             -TCSEEEECCC
T ss_pred             -CCceEEeecc
Confidence             5677776653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.86  E-value=6.3e-14  Score=109.48  Aligned_cols=46  Identities=15%  Similarity=0.211  Sum_probs=42.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhh
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE   76 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~   76 (255)
                      ++.|+||+|++|+++|+.|+++|++|++.+|++++++++.+++...
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~   47 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRI   47 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence            4678898899999999999999999999999999999999988765

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1.5e-06  Score=66.46  Aligned_cols=87  Identities=17%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..++++|+|+|.|+ ||.|++++..|++.|. ++++..|+.++.++...................|+.+.+.+.....  
T Consensus        13 ~~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   89 (182)
T d1vi2a1          13 GFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALA--   89 (182)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH--
T ss_pred             CCCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhc--
Confidence            46789999999999 6999999999999998 6999999988766554433221112234566779999887776665  


Q ss_pred             hcCCCCeeEEEEccCC
Q 025275          103 NSQGRPLNILINNAGI  118 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~  118 (255)
                           ..|++||+...
T Consensus        90 -----~~diiIN~Tp~  100 (182)
T d1vi2a1          90 -----SADILTNGTKV  100 (182)
T ss_dssp             -----TCSEEEECSST
T ss_pred             -----ccceeccccCC
Confidence                 57999999864

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.10  E-value=4.8e-06  Score=63.46  Aligned_cols=79  Identities=15%  Similarity=0.223  Sum_probs=54.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +|.++||+||+|++|.+.++-....|++||.+.++.++.+.    +.+.  +....+   |-.+++..+.+.+...  ..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~----~~~~--Ga~~vi---~~~~~~~~~~~~~~~~--~~   97 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY----LKQI--GFDAAF---NYKTVNSLEEALKKAS--PD   97 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH----HHHT--TCSEEE---ETTSCSCHHHHHHHHC--TT
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHH----HHhh--hhhhhc---ccccccHHHHHHHHhh--cC
Confidence            58999999999999999999888899999999988765332    2222  322222   3344433444433322  24


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|+++.+.|
T Consensus        98 Gvd~v~D~vG  107 (182)
T d1v3va2          98 GYDCYFDNVG  107 (182)
T ss_dssp             CEEEEEESSC
T ss_pred             CCceeEEecC
Confidence            7999999987

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.09  E-value=7.6e-06  Score=61.51  Aligned_cols=75  Identities=19%  Similarity=0.276  Sum_probs=56.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+|.++|.|| |.+|+.+|+.|+++|++|++++|+.++.++..+.      .........+..+.......+.       
T Consensus         1 ~~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~------~~~~~~~~~~~~~~~~~~~~i~-------   66 (182)
T d1e5qa1           1 ATKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG------VQHSTPISLDVNDDAALDAEVA-------   66 (182)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTT------CTTEEEEECCTTCHHHHHHHHT-------
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhc------ccccccccccccchhhhHhhhh-------
Confidence            3688999987 9999999999999999999999999886665543      2234555567777666666655       


Q ss_pred             CeeEEEEcc
Q 025275          108 PLNILINNA  116 (255)
Q Consensus       108 ~id~lv~~a  116 (255)
                      ..|.++.+.
T Consensus        67 ~~~~~i~~~   75 (182)
T d1e5qa1          67 KHDLVISLI   75 (182)
T ss_dssp             TSSEEEECS
T ss_pred             ccceeEeec
Confidence            356666554

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.07  E-value=1.5e-05  Score=59.34  Aligned_cols=82  Identities=18%  Similarity=0.315  Sum_probs=61.2

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++++++++|.|+ |++|..+++.|..+|+ ++.++.|+.++.+++.+++     +.  .++  +   .+++...+.    
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~-----~~--~~~--~---~~~~~~~l~----   83 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-----GG--EAV--R---FDELVDHLA----   83 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-----TC--EEC--C---GGGHHHHHH----
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh-----hc--ccc--c---chhHHHHhc----
Confidence            688999999998 9999999999999998 6999999988877777665     22  222  2   234454555    


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHH
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDN  129 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~  129 (255)
                         ..|++|++.+...+.  .+.+.
T Consensus        84 ---~~Divi~atss~~~i--i~~~~  103 (159)
T d1gpja2          84 ---RSDVVVSATAAPHPV--IHVDD  103 (159)
T ss_dssp             ---TCSEEEECCSSSSCC--BCHHH
T ss_pred             ---cCCEEEEecCCCCcc--ccHhh
Confidence               589999999865544  34443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=9.4e-06  Score=61.28  Aligned_cols=79  Identities=18%  Similarity=0.316  Sum_probs=54.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++||+||+|++|...++-+...|++|+++++++++.+.. ++   .  +.. ..  +|.++++-.+.+.+...  ..
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~-~~---~--Ga~-~v--i~~~~~~~~~~i~~~t~--~~   96 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQ---N--GAH-EV--FNHREVNYIDKIKKYVG--EK   96 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HH---T--TCS-EE--EETTSTTHHHHHHHHHC--TT
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccc-cc---c--Ccc-cc--cccccccHHHHhhhhhc--cC
Confidence            588999999999999999998888999999999876554332 22   2  322 22  36666554444433332  23


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|+++.+.|
T Consensus        97 g~d~v~d~~g  106 (174)
T d1yb5a2          97 GIDIIIEMLA  106 (174)
T ss_dssp             CEEEEEESCH
T ss_pred             CceEEeeccc
Confidence            6999998876

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=1.8e-05  Score=59.77  Aligned_cols=80  Identities=14%  Similarity=0.222  Sum_probs=56.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++||+||+|++|...++-....|++|++++++.++.+... ++     +.. +.  +|-++++-.+++ .++. ...
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~-~l-----Ga~-~v--i~~~~~d~~~~v-~~~t-~g~   96 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KA-----GAW-QV--INYREEDLVERL-KEIT-GGK   96 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HH-----TCS-EE--EETTTSCHHHHH-HHHT-TTC
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH-hc-----CCe-EE--EECCCCCHHHHH-HHHh-CCC
Confidence            4789999999999999999988889999999999987754433 33     322 22  366665444433 3332 234


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      .+|+++.+.|.
T Consensus        97 g~d~v~d~~g~  107 (179)
T d1qora2          97 KVRVVYDSVGR  107 (179)
T ss_dssp             CEEEEEECSCG
T ss_pred             CeEEEEeCccH
Confidence            69999998873

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.91  E-value=2e-05  Score=60.28  Aligned_cols=85  Identities=16%  Similarity=0.196  Sum_probs=56.5

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc-CCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS-QGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~-~~g~  108 (255)
                      .+++++||+|++|.+.++-....|++||.+.|+.++.++..+.+++.  +... .+.-|-.+..++...+.++.. ..++
T Consensus        31 ~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~l--Gad~-vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          31 DWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKEL--GATQ-VITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             CEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHH--TCSE-EEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             EEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhc--cccE-EEeccccchhHHHHHHHHHHhhccCC
Confidence            44555799999999988888889999999999988877777777665  3322 222221111223333343332 3457


Q ss_pred             eeEEEEccC
Q 025275          109 LNILINNAG  117 (255)
Q Consensus       109 id~lv~~ag  117 (255)
                      +|+++.+.|
T Consensus       108 vdvv~D~vg  116 (189)
T d1gu7a2         108 AKLALNCVG  116 (189)
T ss_dssp             EEEEEESSC
T ss_pred             ceEEEECCC
Confidence            999999876

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=2e-05  Score=59.26  Aligned_cols=78  Identities=17%  Similarity=0.303  Sum_probs=58.5

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ...+++||.++|.|+ ||.+++++..|.+.|.+|.++.|+.++.+++.+.+....   .+..+  +..+.          
T Consensus        12 ~~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~---~~~~~--~~~~~----------   75 (170)
T d1nyta1          12 LSFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG---SIQAL--SMDEL----------   75 (170)
T ss_dssp             HTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS---SEEEC--CSGGG----------
T ss_pred             cCCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc---ccccc--ccccc----------
Confidence            356789999999997 788999999999999999999999998888877765541   23332  22211          


Q ss_pred             hcCCCCeeEEEEccCC
Q 025275          103 NSQGRPLNILINNAGI  118 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~  118 (255)
                        .....|++||+...
T Consensus        76 --~~~~~dliIN~Tp~   89 (170)
T d1nyta1          76 --EGHEFDLIINATSS   89 (170)
T ss_dssp             --TTCCCSEEEECCSC
T ss_pred             --cccccceeeccccc
Confidence              12358999999853

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.87  E-value=1.9e-05  Score=59.80  Aligned_cols=79  Identities=15%  Similarity=0.284  Sum_probs=54.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++||+||+|++|...++-+...|++|+++.++.++.    +.+++.  +.. +.  .|-.+++-.+.+ .+... ..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~----~~l~~~--Ga~-~v--i~~~~~~~~~~v-~~~t~-~~   93 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR----EMLSRL--GVE-YV--GDSRSVDFADEI-LELTD-GY   93 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH----HHHHTT--CCS-EE--EETTCSTHHHHH-HHHTT-TC
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccc----cccccc--ccc-cc--ccCCccCHHHHH-HHHhC-CC
Confidence            478999999999999999998888999999999876653    233332  322 22  255554433333 33221 23


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      ++|+++.+.|
T Consensus        94 g~d~v~d~~g  103 (183)
T d1pqwa_          94 GVDVVLNSLA  103 (183)
T ss_dssp             CEEEEEECCC
T ss_pred             CEEEEEeccc
Confidence            6999999987

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=1.7e-05  Score=51.53  Aligned_cols=42  Identities=24%  Similarity=0.345  Sum_probs=36.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDV   69 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~   69 (255)
                      ++.++||+||+||+|...++-+...|++|+.+.+++++.+-+
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~   72 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            578999999999999988888888999999999988775443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.79  E-value=2.9e-05  Score=55.77  Aligned_cols=73  Identities=14%  Similarity=0.239  Sum_probs=55.9

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ++++|.|+ |.+|+.++++|.+.|.+|++++++++..+...+++       ...++..|.+|++.++.+--      ...
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i------~~a   66 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGI------EDA   66 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTT------TTC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcCh------hhh
Confidence            36899998 99999999999999999999999987765544331       35688899999886665511      246


Q ss_pred             eEEEEcc
Q 025275          110 NILINNA  116 (255)
Q Consensus       110 d~lv~~a  116 (255)
                      |.++...
T Consensus        67 ~~vv~~t   73 (132)
T d1lssa_          67 DMYIAVT   73 (132)
T ss_dssp             SEEEECC
T ss_pred             hhhcccC
Confidence            7777654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.76  E-value=5.5e-05  Score=56.91  Aligned_cols=78  Identities=15%  Similarity=0.209  Sum_probs=59.7

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      ...+++|.++|.|+ ||.+++++..|.+.+.+|+++.|+.++.+...+.+...   ..+..+..|-.             
T Consensus        13 ~~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~~~~~-------------   75 (171)
T d1p77a1          13 NWLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY---GNIQAVSMDSI-------------   75 (171)
T ss_dssp             TCCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---SCEEEEEGGGC-------------
T ss_pred             CCCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc---cccchhhhccc-------------
Confidence            45788999999977 67899999999998889999999999988888887653   24555544411             


Q ss_pred             cCCCCeeEEEEccCCC
Q 025275          104 SQGRPLNILINNAGIM  119 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~  119 (255)
                       .....|++||+....
T Consensus        76 -~~~~~diiIN~tp~g   90 (171)
T d1p77a1          76 -PLQTYDLVINATSAG   90 (171)
T ss_dssp             -CCSCCSEEEECCCC-
T ss_pred             -cccccceeeeccccc
Confidence             134689999998643

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.73  E-value=0.00014  Score=55.00  Aligned_cols=82  Identities=22%  Similarity=0.263  Sum_probs=53.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.+++|+|+ |++|...++-+...|+ +|+++++++++++. .+++     +.. +.+...=.+..+..+.+.+... .
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~-a~~l-----Ga~-~vi~~~~~~~~~~~~~i~~~~~-~   98 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKL-AEEI-----GAD-LTLNRRETSVEERRKAIMDITH-G   98 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHH-HHHT-----TCS-EEEETTTSCHHHHHHHHHHHTT-T
T ss_pred             CCCEEEEECC-Cccchhheecccccccccccccccccccccc-cccc-----cce-EEEeccccchHHHHHHHHHhhC-C
Confidence            5899999987 8999999999999998 79999998876543 2333     322 2332222233333333333322 2


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      .++|++|.++|.
T Consensus        99 ~g~Dvvid~vG~  110 (182)
T d1vj0a2          99 RGADFILEATGD  110 (182)
T ss_dssp             SCEEEEEECSSC
T ss_pred             CCceEEeecCCc
Confidence            359999999984

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.71  E-value=5.8e-05  Score=56.67  Aligned_cols=75  Identities=17%  Similarity=0.211  Sum_probs=51.4

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ..|+++||+||+|++|...++-+...|++|+.+++++++.+... ++     +.... +  |..+.  .    +++.+ .
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~-~l-----Ga~~~-i--~~~~~--~----~~~~~-~   89 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-AL-----GAEEA-A--TYAEV--P----ERAKA-W   89 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HT-----TCSEE-E--EGGGH--H----HHHHH-T
T ss_pred             CCCCEEEEEeccccchhhhhhhhccccccccccccccccccccc-cc-----cccee-e--ehhhh--h----hhhhc-c
Confidence            36899999999999999998888889999999999877654433 22     32222 2  33321  1    12222 3


Q ss_pred             CCeeEEEEccC
Q 025275          107 RPLNILINNAG  117 (255)
Q Consensus       107 g~id~lv~~ag  117 (255)
                      .++|+++.+.|
T Consensus        90 ~g~D~v~d~~G  100 (171)
T d1iz0a2          90 GGLDLVLEVRG  100 (171)
T ss_dssp             TSEEEEEECSC
T ss_pred             ccccccccccc
Confidence            46999999876

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.71  E-value=9e-05  Score=55.30  Aligned_cols=82  Identities=20%  Similarity=0.213  Sum_probs=54.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC-
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG-  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~-  106 (255)
                      .|.+++|+| +|++|...++.+...|++|+++++++++++...+ +     +.... +..|-.+ +......+++.+.. 
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~-~-----ga~~~-~~~~~~~-~~~~~~~~~~~~~~g   96 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN-C-----GADVT-LVVDPAK-EEESSIIERIRSAIG   96 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-T-----TCSEE-EECCTTT-SCHHHHHHHHHHHSS
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHH-c-----CCcEE-Eeccccc-cccchhhhhhhcccc
Confidence            467899997 6899999999998999999999999877543322 2     32222 2223222 22333444444433 


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      ..+|++|.++|.
T Consensus        97 ~g~D~vid~~g~  108 (170)
T d1e3ja2          97 DLPNVTIDCSGN  108 (170)
T ss_dssp             SCCSEEEECSCC
T ss_pred             cCCceeeecCCC
Confidence            469999999984

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.71  E-value=5e-05  Score=57.43  Aligned_cols=79  Identities=20%  Similarity=0.259  Sum_probs=50.5

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ..|.++||+||+||+|...++-....|++|+.+.+++++.+... ++     +... .+  |-++.  ..+..+.+  ..
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~-~l-----Ga~~-vi--~~~~~--~~~~~~~~--~~   96 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VL-----GAKE-VL--AREDV--MAERIRPL--DK   96 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HT-----TCSE-EE--ECC-----------C--CS
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH-hc-----ccce-ee--ecchh--HHHHHHHh--hc
Confidence            45789999999999998887777789999999999988743332 22     3332 22  22221  12222221  23


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +++|+++.+.|.
T Consensus        97 ~gvD~vid~vgg  108 (176)
T d1xa0a2          97 QRWAAAVDPVGG  108 (176)
T ss_dssp             CCEEEEEECSTT
T ss_pred             cCcCEEEEcCCc
Confidence            579999999984

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.63  E-value=0.0012  Score=47.96  Aligned_cols=120  Identities=15%  Similarity=0.187  Sum_probs=73.9

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHH
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      +-.++++.|.|+ |.+|.++|..|+.+|.  ++++.|++++.++.....+.....  ...+.....|   ++        
T Consensus         3 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d---~~--------   70 (148)
T d1ldna1           3 NNGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD---YD--------   70 (148)
T ss_dssp             TTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECC---GG--------
T ss_pred             CCCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECC---HH--------
Confidence            345678888897 9999999999999885  799999988776554444543211  2223333222   21        


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                         .....|++|.++|....+.+.-.+    .+..|    .-+++...+.+.+.    ...+.+|++|...
T Consensus        71 ---~l~daDvvvitag~~~~~~~~R~d----l~~~N----~~i~~~i~~~i~~~----~p~a~~ivvtNPv  126 (148)
T d1ldna1          71 ---DCRDADLVVICAGANQKPGETRLD----LVDKN----IAIFRSIVESVMAS----GFQGLFLVATNPV  126 (148)
T ss_dssp             ---GTTTCSEEEECCSCCCCTTTCSGG----GHHHH----HHHHHHHHHHHHHH----TCCSEEEECSSSH
T ss_pred             ---HhccceeEEEecccccccCcchhH----HHHHH----HHHHHHHHHHHHhh----CCCceEEEecCcc
Confidence               123579999999986554333333    23333    33445555555543    3356788877744

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.56  E-value=0.00037  Score=50.63  Aligned_cols=117  Identities=17%  Similarity=0.167  Sum_probs=68.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++.|+||+|.+|.++|..|+.+|.  ++++.+.+..+. +. ..+..   .........-+. ..+..+.++       .
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~-~a-~Dl~~---~~~~~~~~~~~~-~~~~~~~~~-------~   68 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG-VA-ADLSH---IETRATVKGYLG-PEQLPDCLK-------G   68 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH-HH-HHHTT---SSSSCEEEEEES-GGGHHHHHT-------T
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch-hh-HHHhh---hhhhcCCCeEEc-CCChHHHhC-------C
Confidence            588999999999999999999985  699999875432 22 22221   111111111121 222333333       5


Q ss_pred             eeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          109 LNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       109 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      .|++|..||....+.+ +-.   +.++.|+.-.-.    +.+.+.+.    ...+.++.+|...
T Consensus        69 aDivVitag~~~~~g~-sR~---~ll~~N~~i~~~----i~~~i~~~----~p~~iiivvtNPv  120 (144)
T d1mlda1          69 CDVVVIPAGVPRKPGM-TRD---DLFNTNATIVAT----LTAACAQH----CPDAMICIISNPV  120 (144)
T ss_dssp             CSEEEECCSCCCCTTC-CGG---GGHHHHHHHHHH----HHHHHHHH----CTTSEEEECSSCH
T ss_pred             CCEEEECCCcCCCCCC-Ccc---hHHHHHHHHHHH----HHHHHHhc----CCCeEEEEecCch
Confidence            7999999997654432 222   235555554444    44444443    2356777777744

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=0.0008  Score=49.64  Aligned_cols=126  Identities=13%  Similarity=0.115  Sum_probs=76.5

Q ss_pred             ccccCCCCCCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC--CCceEEEEeCCCCHHHH
Q 025275           20 EVTQGIDGTGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP--SAKVDAMELDVSSLASV   95 (255)
Q Consensus        20 ~~~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~si   95 (255)
                      .+.+...++..++.|.|+ |.+|..+|..|+.+|.  ++++.+++.+.+......+.....  +........|   .+  
T Consensus        10 ~~~~~~~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d---~~--   83 (159)
T d2ldxa1          10 NLVPEDKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD---YN--   83 (159)
T ss_dssp             ECSSCCCCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS---GG--
T ss_pred             hhcccccCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc---hh--
Confidence            344555566667888886 9999999999999985  799999998766555444543211  1122222222   21  


Q ss_pred             HHHHHHHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275           96 RKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus        96 ~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                               .....|++|..||....+.+...+.    ++.|    ..+++...+.+.+.    ...+.++.+|...
T Consensus        84 ---------~~~~adivvitag~~~~~~~~R~dl----l~~N----~~i~~~i~~~i~~~----~p~~ivivvtNPv  139 (159)
T d2ldxa1          84 ---------VSANSKLVIITAGARMVSGQTRLDL----LQRN----VAIMKAIVPGVIQN----SPDCKIIVVTNPV  139 (159)
T ss_dssp             ---------GGTTEEEEEECCSCCCCTTTCSSCT----THHH----HHHHHHHTTTHHHH----STTCEEEECSSSH
T ss_pred             ---------hhccccEEEEecccccCCCCCHHHH----HHHH----HHHHHHHHHHHhcc----CCCeEEEEeCCcH
Confidence                     1236899999999765443222221    2223    33455556666553    3467788887744

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00056  Score=50.88  Aligned_cols=81  Identities=20%  Similarity=0.217  Sum_probs=54.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.+++|.|+ |++|...++.+...|+ +|+++++++++++.. +++     +.. +.+..+-.+.....+.++...  .
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a-~~~-----Ga~-~~~~~~~~~~~~~~~~~~~~~--g   95 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEI-----GAD-LVLQISKESPQEIARKVEGQL--G   95 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT-----TCS-EEEECSSCCHHHHHHHHHHHH--T
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHH-HHh-----CCc-ccccccccccccccccccccC--C
Confidence            3678999986 9999999999999999 699999998765433 333     322 333334445444444444332  2


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      .++|++|.++|.
T Consensus        96 ~g~Dvvid~~G~  107 (171)
T d1pl8a2          96 CKPEVTIECTGA  107 (171)
T ss_dssp             SCCSEEEECSCC
T ss_pred             CCceEEEeccCC
Confidence            368999999984

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.50  E-value=0.00026  Score=52.72  Aligned_cols=80  Identities=15%  Similarity=0.161  Sum_probs=54.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .+.+++|.|++|++|...++.+...|+ +|+++++++++++... ++     +.. ..+  |-++++..+...+...  .
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~-~~-----Ga~-~~i--~~~~~~~~~~~~~~~~--~   95 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RA-----GAD-YVI--NASMQDPLAEIRRITE--S   95 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HH-----TCS-EEE--ETTTSCHHHHHHHHTT--T
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH-Hc-----CCc-eee--ccCCcCHHHHHHHHhh--c
Confidence            478999999999999999999998996 7888988876543332 22     322 233  4444444444444331  2


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +.+|+++.++|.
T Consensus        96 ~~~d~vid~~g~  107 (170)
T d1jvba2          96 KGVDAVIDLNNS  107 (170)
T ss_dssp             SCEEEEEESCCC
T ss_pred             ccchhhhccccc
Confidence            469999999984

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.48  E-value=0.00042  Score=50.98  Aligned_cols=127  Identities=14%  Similarity=0.072  Sum_probs=72.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhC--CCCceEEEEeCCCCHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEI--PSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      +-.+.+++.|.|+ |.+|..+|..|+..+. ++++.+.+++.++.....+....  .+.......  -++.   +..++ 
T Consensus         3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~--~~~~---~~~~~-   75 (154)
T d1pzga1           3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA--EYSY---EAALT-   75 (154)
T ss_dssp             CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE--ECSH---HHHHT-
T ss_pred             cccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEec--cCch---hhhhc-
Confidence            3445678888897 9999999999999885 89999999876655444443211  011111211  1121   12222 


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKD-NIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~-~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                            ..|++|.++|....+-+.+.+ +-.+.+..|..-    ++...+.+.+.    ...+.++++|...
T Consensus        76 ------~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~i----v~~i~~~i~~~----~p~aiviivsNPv  133 (154)
T d1pzga1          76 ------GADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKI----IREIGQNIKKY----CPKTFIIVVTNPL  133 (154)
T ss_dssp             ------TCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHH----HHHHHHHHHHH----CTTCEEEECCSSH
T ss_pred             ------CCCeEEEecccccCCCCCCcccchhhhhhhhHHH----HHHHHHHHHhc----CCCcEEEEeCCcH
Confidence                  579999999987543321111 112234444444    44444444442    2356777777644

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=9.3e-05  Score=56.33  Aligned_cols=79  Identities=15%  Similarity=0.207  Sum_probs=50.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEE-EEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIM-AVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .+.+|||+||+|++|...++-....|+++++ ++++.++..+..+++     +.. ..+  |..+++ +.+.++++..  
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~-----gad-~vi--~~~~~~-~~~~~~~~~~--   98 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL-----GFD-AAV--NYKTGN-VAEQLREACP--   98 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS-----CCS-EEE--ETTSSC-HHHHHHHHCT--
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc-----cce-EEe--eccchh-HHHHHHHHhc--
Confidence            3489999999999998888777779987554 455555444433332     222 233  555433 4445555432  


Q ss_pred             CCeeEEEEccC
Q 025275          107 RPLNILINNAG  117 (255)
Q Consensus       107 g~id~lv~~ag  117 (255)
                      .++|+++.+.|
T Consensus        99 ~GvDvv~D~vG  109 (187)
T d1vj1a2          99 GGVDVYFDNVG  109 (187)
T ss_dssp             TCEEEEEESSC
T ss_pred             cCceEEEecCC
Confidence            36999999987

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.00049  Score=53.78  Aligned_cols=78  Identities=22%  Similarity=0.244  Sum_probs=55.8

Q ss_pred             CCCCcEEEEecC----------------CCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCC
Q 025275           26 DGTGLTAIVTGA----------------SSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV   89 (255)
Q Consensus        26 ~~~~k~vlItG~----------------s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl   89 (255)
                      +++|+++|||+|                ||-.|.+||+++..+|++|.++.-....           .+...+..+  .+
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~-----------~~p~~~~~~--~~   69 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL-----------PTPPFVKRV--DV   69 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC-----------CCCTTEEEE--EC
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhccccc-----------Ccccccccc--ee
Confidence            688999999987                6889999999999999999888654431           112234444  45


Q ss_pred             CCHHHHHHHHHHHhcCCCCeeEEEEccCCC
Q 025275           90 SSLASVRKFASEYNSQGRPLNILINNAGIM  119 (255)
Q Consensus        90 ~~~~si~~~~~~~~~~~g~id~lv~~ag~~  119 (255)
                      ...+++...+.+..   ...|++|++|++.
T Consensus        70 ~t~~~m~~~~~~~~---~~~D~~i~aAAvs   96 (223)
T d1u7za_          70 MTALEMEAAVNASV---QQQNIFIGCAAVA   96 (223)
T ss_dssp             CSHHHHHHHHHHHG---GGCSEEEECCBCC
T ss_pred             hhhHHHHHHHHhhh---ccceeEeeeechh
Confidence            55556655554443   3579999999876

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.38  E-value=0.00022  Score=52.04  Aligned_cols=120  Identities=14%  Similarity=0.138  Sum_probs=69.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhC--CCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEI--PSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      |++.|.|+ |.+|..+|..|+.+|.  ++++.++++++++.....+....  .........   .|++.+          
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~---~d~~~l----------   67 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI---NDWAAL----------   67 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE---SCGGGG----------
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceec---cCHHHh----------
Confidence            67778895 9999999999999984  79999998876654444444321  122223322   232211          


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                       ..-|++|.+||......+....+-.+.++.|.    -+++.+.+.+.+.    ...+.+|.+|...
T Consensus        68 -~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~----~i~~~i~~~i~~~----~p~aivivvtNPv  125 (146)
T d1hyha1          68 -ADADVVISTLGNIKLQQDNPTGDRFAELKFTS----SMVQSVGTNLKES----GFHGVLVVISNPV  125 (146)
T ss_dssp             -TTCSEEEECCSCGGGTC-------CTTHHHHH----HHHHHHHHHHHHT----TCCSEEEECSSSH
T ss_pred             -ccccEEEEeccccccccccCCccHHHHHHHHH----HHHHHHHHHHhhc----CCCeEEEEecCcH
Confidence             25799999999764322111111122344443    4556666666653    3356777777644

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.37  E-value=0.001  Score=48.72  Aligned_cols=118  Identities=12%  Similarity=0.043  Sum_probs=64.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC---------eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           31 TAIVTGASSGIGTETARVLALRGV---------HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~---------~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ++.|+||+|.+|.+++..|+..+.         +++..+++.+.++.....+.... ......+...-.++    ..++ 
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~-   79 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA-FPLLAGLEATDDPK----VAFK-   79 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT-CTTEEEEEEESCHH----HHTT-
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccc-cccccccccCCchh----hhcc-
Confidence            799999999999999999998763         12222333344444433333321 22333333332222    2222 


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCC
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSE  171 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~  171 (255)
                            ..|++|.++|....+. .+.+   +.++.|+.    +++...+.+.+..   ++.+.|+.+|..
T Consensus        80 ------~advViitaG~~~~pg-~~r~---dl~~~N~~----i~~~~~~~i~k~a---~~~~~vivvsNP  132 (154)
T d1y7ta1          80 ------DADYALLVGAAPRKAG-MERR---DLLQVNGK----IFTEQGRALAEVA---KKDVKVLVVGNP  132 (154)
T ss_dssp             ------TCSEEEECCCCCCCTT-CCHH---HHHHHHHH----HHHHHHHHHHHHS---CTTCEEEECSSS
T ss_pred             ------cccEEEeecCcCCCCC-CcHH---HHHHHHHH----HHHHHHHHHHHhC---CCCcEEEEecCc
Confidence                  5899999999865432 3333   23444444    4444444444310   224566667664

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=0.0033  Score=45.45  Aligned_cols=117  Identities=17%  Similarity=0.144  Sum_probs=66.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHc-C--CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           31 TAIVTGASSGIGTETARVLALR-G--VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~-G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++.|+|++|.+|.++|..|+.+ +  .++.+.+..+ ........+........... ...-.+++    .++       
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~-~~~~~~~~----~~~-------   68 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKG-FSGEDATP----ALE-------   68 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEE-ECSSCCHH----HHT-------
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcE-EEcCCCcc----ccC-------
Confidence            5889999999999999988654 4  5799998764 34333333333211112222 12333332    222       


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      .-|++|.++|....+.+ +-.   +.++.|..-.    +...+.+.+.    ...+.+|.+|...
T Consensus        69 ~aDvvvitaG~~~k~g~-~R~---dl~~~N~~i~----~~v~~~i~~~----~p~aivivvtNPv  121 (145)
T d2cmda1          69 GADVVLISAGVRRKPGM-DRS---DLFNVNAGIV----KNLVQQVAKT----CPKACIGIITNPV  121 (145)
T ss_dssp             TCSEEEECCSCCCCTTC-CGG---GGHHHHHHHH----HHHHHHHHHH----CTTSEEEECSSSH
T ss_pred             CCCEEEECCCccCCCCc-chh---hHHHHHHHHH----HHHHHHHHhh----CCCcEEEEccCCc
Confidence            46999999998654432 222   2355554444    4444444442    2346788887754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.30  E-value=0.0026  Score=46.03  Aligned_cols=103  Identities=18%  Similarity=0.167  Sum_probs=59.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccch--HHHHHHHHHh---hCC-CCceEEEEeCCCCHHHHHHHHHHH
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAA--GKDVREAIVK---EIP-SAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~--~~~~~~~~~~---~~~-~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ++.|.||+|.+|.++|..|+.+|.  ++++.++++..  ++.....+..   ..+ ..++.+...  .+.+    .    
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~--~d~~----~----   71 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESD--ENLR----I----   71 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEET--TCGG----G----
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCc--chHH----H----
Confidence            589999999999999999999994  89999988532  2222222322   111 112222221  1221    1    


Q ss_pred             hcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025275          103 NSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKK  154 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~  154 (255)
                         ....|++|.+||....+- .+-   .+.++.|..-    ++...+.+.+
T Consensus        72 ---l~~aDvVVitAG~~~~~g-~sR---~dl~~~Na~i----v~~i~~~i~~  112 (145)
T d1hyea1          72 ---IDESDVVIITSGVPRKEG-MSR---MDLAKTNAKI----VGKYAKKIAE  112 (145)
T ss_dssp             ---GTTCSEEEECCSCCCCTT-CCH---HHHHHHHHHH----HHHHHHHHHH
T ss_pred             ---hccceEEEEecccccCCC-CCh---hhhhhhhHHH----HHHHHHHHhc
Confidence               125899999999765432 222   2345555544    4444444444

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.28  E-value=0.00015  Score=54.16  Aligned_cols=77  Identities=18%  Similarity=0.215  Sum_probs=51.4

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh-cC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN-SQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~-~~  105 (255)
                      ..+.+|||+||+||+|...++-....|++||.+.++.++.+.+. ++     +.... +  |   .+   ....+.. ..
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~-~l-----Gad~v-i--~---~~---~~~~~~~~~~   86 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK-QL-----GASEV-I--S---RE---DVYDGTLKAL   86 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH-HH-----TCSEE-E--E---HH---HHCSSCCCSS
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHH-hh-----cccce-E--e---cc---chhchhhhcc
Confidence            35678999999999998888877779999999999988754432 22     33322 1  1   11   1111122 22


Q ss_pred             -CCCeeEEEEccCC
Q 025275          106 -GRPLNILINNAGI  118 (255)
Q Consensus       106 -~g~id~lv~~ag~  118 (255)
                       -+++|+++.+.|.
T Consensus        87 ~~~gvd~vid~vgg  100 (167)
T d1tt7a2          87 SKQQWQGAVDPVGG  100 (167)
T ss_dssp             CCCCEEEEEESCCT
T ss_pred             cCCCceEEEecCcH
Confidence             2469999999873

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.28  E-value=0.0011  Score=48.05  Aligned_cols=117  Identities=10%  Similarity=0.111  Sum_probs=66.5

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcC--CeEEEEEeccchHHHHHHHHHhhC-CCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRG--VHVIMAVRNMAAGKDVREAIVKEI-PSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++.|.|+ |.+|..+|..|+.+|  .+|++.|++++..+.....+.... ..........|   ++       +    
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d---~~-------~----   69 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGE---YS-------D----   69 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECC---GG-------G----
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeecc---HH-------H----
Confidence            457888895 999999999999998  479999999876654444443311 12223333333   21       1    


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ....|++|.++|....+.    .+-.+.+..|+    -+++...+.+.+.    ...+.+|++|...
T Consensus        70 ~~~adivvitag~~~~~g----~~r~~l~~~N~----~i~~~~~~~i~~~----~p~aivivvtNPv  124 (146)
T d1ez4a1          70 CKDADLVVITAGAPQKPG----ESRLDLVNKNL----NILSSIVKPVVDS----GFDGIFLVAANPV  124 (146)
T ss_dssp             GTTCSEEEECCCC--------------CHHHHH----HHHHHHHHHHHHT----TCCSEEEECSSSH
T ss_pred             hccccEEEEecccccCCC----CCHHHHHHHHH----HHHHHHHHHHhhc----CCCcEEEEeCCcc
Confidence            125799999999754332    12223344454    3444555555542    2355677766643

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.27  E-value=0.00038  Score=52.23  Aligned_cols=79  Identities=16%  Similarity=0.201  Sum_probs=52.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.+++|.|+ |++|...++.+...|+ +|+++++++++++.. +++     +.. +++  |..+++..+.+ .+... .
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a-~~l-----Ga~-~~i--~~~~~~~~~~v-~~~t~-g   94 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA-KFY-----GAT-DIL--NYKNGHIEDQV-MKLTN-G   94 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH-HHH-----TCS-EEE--CGGGSCHHHHH-HHHTT-T
T ss_pred             CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHH-Hhh-----Ccc-ccc--cccchhHHHHH-HHHhh-c
Confidence            4778999986 8999999988888998 699999887664333 333     321 233  44444333333 33322 2


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      .++|++|.++|.
T Consensus        95 ~G~D~vid~~g~  106 (174)
T d1jqba2          95 KGVDRVIMAGGG  106 (174)
T ss_dssp             SCEEEEEECSSC
T ss_pred             cCcceEEEccCC
Confidence            359999999984

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=0.0011  Score=49.10  Aligned_cols=76  Identities=13%  Similarity=0.206  Sum_probs=50.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.+++|.|+ |++|...++.+...|++|+++++++++++.. +++     +.. +++  |-.++..   ..++   ..+
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a-~~l-----Ga~-~~i--~~~~~~~---~~~~---~~~   90 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDA-MKM-----GAD-HYI--ATLEEGD---WGEK---YFD   90 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHH-HHH-----TCS-EEE--EGGGTSC---HHHH---SCS
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHh-hcc-----CCc-EEe--eccchHH---HHHh---hhc
Confidence            5789999987 8999998888878999999999998876543 333     322 222  2211111   1122   234


Q ss_pred             CeeEEEEccCCC
Q 025275          108 PLNILINNAGIM  119 (255)
Q Consensus       108 ~id~lv~~ag~~  119 (255)
                      .+|+++.+.+..
T Consensus        91 ~~d~vi~~~~~~  102 (168)
T d1piwa2          91 TFDLIVVCASSL  102 (168)
T ss_dssp             CEEEEEECCSCS
T ss_pred             ccceEEEEecCC
Confidence            699999988754

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.23  E-value=0.0046  Score=45.40  Aligned_cols=121  Identities=12%  Similarity=0.032  Sum_probs=73.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhC--CCCceEEEEeCCCCHHHHHHHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEI--PSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      ..+..+++.|.|+ |.+|.++|..|+.+|.  ++++.|++++........+....  ..... .+..  .+++.      
T Consensus        16 ~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~-~~~~--~d~~~------   85 (160)
T d1i0za1          16 ATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPK-IVAD--KDYSV------   85 (160)
T ss_dssp             CCCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSE-EEEC--SSGGG------
T ss_pred             ccCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCe-EEec--cchhh------
Confidence            3455678888896 9999999999999996  79999998776654444443211  11122 2211  22221      


Q ss_pred             HHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          101 EYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                           ...-|++|..||....+. .+-.   +.++.|+    .+++...+.+.+.    ...+-+|++|...
T Consensus        86 -----~~~adiVVitAg~~~~~g-~tR~---~l~~~N~----~i~~~i~~~i~~~----~p~aiiivvtNPv  140 (160)
T d1i0za1          86 -----TANSKIVVVTAGVRQQEG-ESRL---NLVQRNV----NVFKFIIPQIVKY----SPDCIIIVVSNPV  140 (160)
T ss_dssp             -----GTTCSEEEECCSCCCCTT-CCGG---GGHHHHH----HHHHHHHHHHHHH----CTTCEEEECSSSH
T ss_pred             -----cccccEEEEecCCccccC-cchH---HHHHHHH----HHHHHHHHHHHhc----CCCcEEEEeCCch
Confidence                 125799999999765432 2222   2233333    4566666666653    3456788777744

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.21  E-value=0.0011  Score=48.18  Aligned_cols=84  Identities=14%  Similarity=0.075  Sum_probs=56.0

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++..-|++.|.||.|.+|..+|+.|.++|++|.+.+|+.....+...   .   +..+.....+   ..++..++.++..
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~~---~---~~~~v~~~~~---~~~~~~v~~~~~~   75 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESIL---A---NADVVIVSVP---INLTLETIERLKP   75 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHH---T---TCSEEEECSC---GGGHHHHHHHHGG
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchhh---h---hccccccccc---hhhheeeeecccc
Confidence            44455789999999999999999999999999999998876443221   1   3344444333   3446666676655


Q ss_pred             CCCCeeEEEEccC
Q 025275          105 QGRPLNILINNAG  117 (255)
Q Consensus       105 ~~g~id~lv~~ag  117 (255)
                      ....=.+++..+.
T Consensus        76 ~~~~~~iiiD~~S   88 (152)
T d2pv7a2          76 YLTENMLLADLTS   88 (152)
T ss_dssp             GCCTTSEEEECCS
T ss_pred             cccCCceEEEecc
Confidence            4332234554443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00093  Score=49.50  Aligned_cols=74  Identities=16%  Similarity=0.315  Sum_probs=51.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.+++|.|+ |++|...++-+...|+++++++++.++.+ ..+++     +.. .+  +|..+.+...       ...+
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~-~a~~l-----Gad-~~--i~~~~~~~~~-------~~~~   92 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKRE-AAKAL-----GAD-EV--VNSRNADEMA-------AHLK   92 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHH-----TCS-EE--EETTCHHHHH-------TTTT
T ss_pred             CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHH-HHhcc-----CCc-EE--EECchhhHHH-------HhcC
Confidence            5789999986 89999888888889999999998887653 34444     322 22  3555554322       1224


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|++|.++|.
T Consensus        93 ~~D~vid~~g~  103 (168)
T d1uufa2          93 SFDFILNTVAA  103 (168)
T ss_dssp             CEEEEEECCSS
T ss_pred             CCceeeeeeec
Confidence            79999999984

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00027  Score=53.26  Aligned_cols=42  Identities=24%  Similarity=0.318  Sum_probs=35.3

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHH
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKD   68 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~   68 (255)
                      ..+.++||+||+||+|...++-....|++||.++++.++.+.
T Consensus        30 ~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~   71 (177)
T d1o89a2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEY   71 (177)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHH
T ss_pred             CCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHH
Confidence            345689999999999988887777799999999999887543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.15  E-value=0.00026  Score=50.46  Aligned_cols=72  Identities=14%  Similarity=0.098  Sum_probs=52.5

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHH-HHHHhcCCCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKF-ASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~-~~~~~~~~g~  108 (255)
                      |.++|.|+ |-+|+.++++|.+.|.+|++++.+++..++..    ..    ....+..|.++++.+..+ +.       .
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~----~~----~~~~~~gd~~~~~~l~~a~i~-------~   64 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY----ATHAVIANATEENELLSLGIR-------N   64 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT----TT----CSEEEECCTTCTTHHHHHTGG-------G
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH----Hh----CCcceeeecccchhhhccCCc-------c
Confidence            45777766 79999999999999999999999987654432    22    235666899998876655 32       3


Q ss_pred             eeEEEEccC
Q 025275          109 LNILINNAG  117 (255)
Q Consensus       109 id~lv~~ag  117 (255)
                      .|.+|-..+
T Consensus        65 a~~vi~~~~   73 (134)
T d2hmva1          65 FEYVIVAIG   73 (134)
T ss_dssp             CSEEEECCC
T ss_pred             ccEEEEEcC
Confidence            677775554

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.0047  Score=44.26  Aligned_cols=115  Identities=13%  Similarity=0.232  Sum_probs=69.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++.|.|+ |.+|.+++..|+.++.  ++++.|++++.++.....+....+ .........   +++.+           .
T Consensus         2 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~---~~~~~-----------~   66 (140)
T d1a5za1           2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG---DYADL-----------K   66 (140)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEEC---CGGGG-----------T
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCC---cHHHh-----------c
Confidence            4667786 8999999999999884  799999998776544444433211 122333322   22211           2


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ..|++|.+||....+.. +-   .+.+..|.    .+++...+.+.+.    ...+.++++|...
T Consensus        67 ~adivvitag~~~~~g~-~r---~dl~~~N~----~I~~~i~~~i~~~----~p~aivivvtNPv  119 (140)
T d1a5za1          67 GSDVVIVAAGVPQKPGE-TR---LQLLGRNA----RVMKEIARNVSKY----APDSIVIVVTNPV  119 (140)
T ss_dssp             TCSEEEECCCCCCCSSC-CH---HHHHHHHH----HHHHHHHHHHHHH----CTTCEEEECSSSH
T ss_pred             CCCEEEEecccccCCCc-ch---hhhhcccc----chHHHHHHHHHhc----CCCcEEEEeCCcH
Confidence            57999999997654332 22   22344443    3555566666653    3356777777644

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.13  E-value=0.0053  Score=45.78  Aligned_cols=119  Identities=11%  Similarity=0.054  Sum_probs=63.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcC---C----eEEEEEeccc--hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRG---V----HVIMAVRNMA--AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G---~----~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      -+|.||||+|.||.+++..|++..   .    .+.+.+....  .++....+++.... .....+..- ++   ....++
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~-~~~~~~~~~-~~---~~~~~~   99 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY-PLLREVSIG-ID---PYEVFE   99 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEE-SC---HHHHTT
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccc-ccccCcccc-cc---chhhcc
Confidence            369999999999999999999753   2    3444444432  23344434433211 112222111 12   122223


Q ss_pred             HHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCC
Q 025275          101 EYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSE  171 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~  171 (255)
                             ..|++|..+|....+. ++-   .+.+..|..    +++...+.+.+..   ++...|+.+|..
T Consensus       100 -------~aDvVvi~ag~~rkpg-~tR---~Dll~~N~~----I~k~~~~~i~~~a---~~~~~vlvv~NP  152 (175)
T d7mdha1         100 -------DVDWALLIGAKPRGPG-MER---AALLDINGQ----IFADQGKALNAVA---SKNVKVLVVGNP  152 (175)
T ss_dssp             -------TCSEEEECCCCCCCTT-CCH---HHHHHHHHH----HHHHHHHHHHHHS---CTTCEEEECSSS
T ss_pred             -------CCceEEEeeccCCCCC-CcH---HHHHHHHHH----HHHHHHHHHHhhC---CCCcEEEEecCc
Confidence                   6899999999865443 233   334555544    4444444544421   224566666653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.12  E-value=0.00024  Score=53.45  Aligned_cols=81  Identities=17%  Similarity=0.194  Sum_probs=56.8

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEE-eCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAME-LDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~Dl~~~~si~~~~~~~  102 (255)
                      ..+++||.|+|.|+ ||.+++++..|.+.| +|.+..|+.++.+++.+.+...........+. .|+.            
T Consensus        13 ~~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~------------   78 (177)
T d1nvta1          13 IGRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLD------------   78 (177)
T ss_dssp             HCCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTT------------
T ss_pred             CCCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhh------------
Confidence            35689999999977 578999999998776 99999999999988888886543222111111 1111            


Q ss_pred             hcCCCCeeEEEEccCCC
Q 025275          103 NSQGRPLNILINNAGIM  119 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~~  119 (255)
                       ......|++||+....
T Consensus        79 -~~~~~~dliIn~tp~g   94 (177)
T d1nvta1          79 -VDLDGVDIIINATPIG   94 (177)
T ss_dssp             -CCCTTCCEEEECSCTT
T ss_pred             -hccchhhhhccCCccc
Confidence             1224679999997643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.11  E-value=0.0011  Score=49.45  Aligned_cols=78  Identities=12%  Similarity=0.117  Sum_probs=50.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeE-EEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHV-IMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~V-i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.+++|.|+ |++|...++.+...|+++ +++++++++++. .+++     +. .+++  |..+++ +.+.++++.  .
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~-a~~~-----Ga-~~~i--~~~~~~-~~~~i~~~t--~   94 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLEL-AKQL-----GA-THVI--NSKTQD-PVAAIKEIT--D   94 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHH-HHHH-----TC-SEEE--ETTTSC-HHHHHHHHT--T
T ss_pred             CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHH-HHHc-----CC-eEEE--eCCCcC-HHHHHHHHc--C
Confidence            4788999987 899999998888899865 555666555433 3333     32 2333  444433 333344442  2


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +++|++|.+.|.
T Consensus        95 gg~D~vid~~G~  106 (174)
T d1f8fa2          95 GGVNFALESTGS  106 (174)
T ss_dssp             SCEEEEEECSCC
T ss_pred             CCCcEEEEcCCc
Confidence            479999999984

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.11  E-value=0.00074  Score=50.42  Aligned_cols=79  Identities=15%  Similarity=0.201  Sum_probs=53.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-HHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-LASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~si~~~~~~~~~~  105 (255)
                      .|.+++|.|+ ||+|...+..+...|+ +|+++++++++.+.. +++     +.. ..+  |..+ ++.+....+...  
T Consensus        28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a-~~~-----Ga~-~~i--~~~~~~~~~~~~~~~~~--   95 (176)
T d2jhfa2          28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEV-----GAT-ECV--NPQDYKKPIQEVLTEMS--   95 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT-----TCS-EEE--CGGGCSSCHHHHHHHHT--
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHH-HHh-----CCe-eEE--ecCCchhHHHHHHHHHh--
Confidence            4789999999 6899999999999996 788889888775433 222     222 222  2221 233555555443  


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                      .+++|++|.+.|.
T Consensus        96 ~~G~D~vid~~G~  108 (176)
T d2jhfa2          96 NGGVDFSFEVIGR  108 (176)
T ss_dssp             TSCBSEEEECSCC
T ss_pred             cCCCCEEEecCCc
Confidence            2479999999984

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.09  E-value=0.0013  Score=49.17  Aligned_cols=79  Identities=19%  Similarity=0.209  Sum_probs=52.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHH-HHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLAS-VRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~s-i~~~~~~~~~~  105 (255)
                      .|.+++|.|+ ||+|...++.+...|+ +||++++++++++- .+++     +... .+  |-.+.+. .+.+.+...  
T Consensus        29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~-Ak~~-----GA~~-~i--n~~~~~~~~~~~~~~~~--   96 (176)
T d1d1ta2          29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEK-AMAV-----GATE-CI--SPKDSTKPISEVLSEMT--   96 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-HHHH-----TCSE-EE--CGGGCSSCHHHHHHHHH--
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHH-HHhc-----CCcE-EE--CccccchHHHHHHHHhc--
Confidence            5789999986 8999999999999996 79999999987654 3343     3322 22  2222221 222222221  


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                      .+++|++|.+.|.
T Consensus        97 g~G~d~vi~~~g~  109 (176)
T d1d1ta2          97 GNNVGYTFEVIGH  109 (176)
T ss_dssp             TSCCCEEEECSCC
T ss_pred             cccceEEEEeCCc
Confidence            2469999999984

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.05  E-value=0.0016  Score=47.93  Aligned_cols=83  Identities=19%  Similarity=0.137  Sum_probs=53.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHH--------hhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIV--------KEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~--------~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ++.|.| .|-+|..+|+.|.++|++|++.+|+++.++...+.-.        +...+.++.++-+   ...+++.+++++
T Consensus         2 kI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav---p~~~~~~vl~~l   77 (165)
T d2f1ka2           2 KIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT---PIQLILPTLEKL   77 (165)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS---CHHHHHHHHHHH
T ss_pred             EEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccC---cHhhhhhhhhhh
Confidence            355665 4999999999999999999999999776655443210        0011233333322   256788888888


Q ss_pred             hcCCCCeeEEEEccC
Q 025275          103 NSQGRPLNILINNAG  117 (255)
Q Consensus       103 ~~~~g~id~lv~~ag  117 (255)
                      ......=.+++..++
T Consensus        78 ~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          78 IPHLSPTAIVTDVAS   92 (165)
T ss_dssp             GGGSCTTCEEEECCS
T ss_pred             hhhcccccceeeccc
Confidence            766554455665554

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.02  E-value=0.0076  Score=43.25  Aligned_cols=116  Identities=12%  Similarity=0.081  Sum_probs=68.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEecc--chHHHHHHHHHh-hCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNM--AAGKDVREAIVK-EIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~--~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++.|+|++|.+|.++|..|+.++.  ++++.+.+.  +.++-....+.. ............|   ++.       +   
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~---~~~-------~---   68 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG---YED-------T---   68 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC---GGG-------G---
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC---HHH-------h---
Confidence            588999999999999999999985  699988643  223322222322 1112233333222   321       1   


Q ss_pred             CCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          106 GRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       106 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                       ..-|++|..||....+. .+   -.+.++.|.    -+++...+.+.+.    ...+.++.+|...
T Consensus        69 -~~aDiVvitaG~~~~~g-~~---R~dl~~~N~----~I~~~i~~~i~~~----~p~~i~ivvtNPv  122 (142)
T d1o6za1          69 -AGSDVVVITAGIPRQPG-QT---RIDLAGDNA----PIMEDIQSSLDEH----NDDYISLTTSNPV  122 (142)
T ss_dssp             -TTCSEEEECCCCCCCTT-CC---HHHHHHHHH----HHHHHHHHHHHTT----CSCCEEEECCSSH
T ss_pred             -hhcCEEEEecccccccC-Cc---hhhHHHHHH----HHHHHHHHHHHhc----CCCceEEEecChH
Confidence             25899999999765432 22   233444443    4566666666653    3356777776643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.96  E-value=0.0015  Score=48.47  Aligned_cols=79  Identities=14%  Similarity=0.157  Sum_probs=51.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCe-EEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC-HHHHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVH-VIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS-LASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~si~~~~~~~~~~  105 (255)
                      .|.+++|.|+ ||+|...++.+...|+. |+++++++++. +..+++     +.. ..+  |..+ .+.+...+++..  
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~-~~ak~l-----Ga~-~~i--~~~~~~~~~~~~~~~~~--   95 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAKEF-----GAT-ECI--NPQDFSKPIQEVLIEMT--   95 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHH-----TCS-EEE--CGGGCSSCHHHHHHHHT--
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHH-HHHHHh-----CCc-EEE--eCCchhhHHHHHHHHHc--
Confidence            4789999998 58999999999999975 66666666654 444454     322 223  2221 233455555443  


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                      .+++|++|.+.|.
T Consensus        96 ~~g~D~vid~~G~  108 (176)
T d2fzwa2          96 DGGVDYSFECIGN  108 (176)
T ss_dssp             TSCBSEEEECSCC
T ss_pred             CCCCcEeeecCCC
Confidence            3479999999984

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.95  E-value=0.0047  Score=44.41  Aligned_cols=115  Identities=16%  Similarity=0.171  Sum_probs=62.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCCC-CceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIPS-AKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++.|.|+ |.+|.++|..|+.++.  ++++.|++++.++.....+....+. .......   .+++           ...
T Consensus         3 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~---~~~~-----------~~~   67 (142)
T d1y6ja1           3 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA---GDYS-----------DVK   67 (142)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CGG-----------GGT
T ss_pred             eEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEee---CcHH-----------HhC
Confidence            4566686 9999999999999985  7999999987654444444332111 1222111   1111           123


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ..|++|..||....+. .+   -.+.+..|+    .+++...+.+.+.    ...+.+|++|...
T Consensus        68 ~adivvitag~~~~~~-~~---r~~l~~~N~----~i~~~i~~~i~~~----~p~ai~ivvtNPv  120 (142)
T d1y6ja1          68 DCDVIVVTAGANRKPG-ET---RLDLAKKNV----MIAKEVTQNIMKY----YNHGVILVVSNPV  120 (142)
T ss_dssp             TCSEEEECCCC-------C---HHHHHHHHH----HHHHHHHHHHHHH----CCSCEEEECSSSH
T ss_pred             CCceEEEecccccCcC-cc---hhHHhhHHH----HHHHHHHHHhhcc----CCCceEEEecChH
Confidence            5799999999764332 22   233444444    4455555555543    3356777776644

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.94  E-value=0.0035  Score=45.02  Aligned_cols=116  Identities=20%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhC--CCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEI--PSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++.|+|+ |.+|.+++..|+..|.  ++++.|.+++.+......+....  ......+...  ++++.           .
T Consensus         2 KI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~~-----------~   67 (142)
T d1guza1           2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYAD-----------T   67 (142)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGGG-----------G
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCHHH-----------h
Confidence            4677796 9999999999999983  79999999876654433332210  0122333322  22221           1


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ...|++|.++|....+.+ +-   .+.++.|..    +++...+.+.+.    .+.+.++++|...
T Consensus        68 ~dadvvvitag~~~~~g~-~r---~~l~~~N~~----i~~~i~~~i~~~----~p~aivivvtNPv  121 (142)
T d1guza1          68 ANSDIVIITAGLPRKPGM-TR---EDLLMKNAG----IVKEVTDNIMKH----SKNPIIIVVSNPL  121 (142)
T ss_dssp             TTCSEEEECCSCCCCTTC-CH---HHHHHHHHH----HHHHHHHHHHHH----CSSCEEEECCSSH
T ss_pred             cCCeEEEEEEecCCCCCC-ch---HHHHHHHHH----HHHHHHHHhhcc----CCCeEEEEecCCh
Confidence            257999999997654322 21   233444444    444445555442    2356777776644

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.93  E-value=0.0053  Score=44.18  Aligned_cols=116  Identities=13%  Similarity=0.121  Sum_probs=66.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++.|.|+ |.+|.++|..|+.+|.  ++++.+++++.++.....+..... .........  .+.+.    +       .
T Consensus         3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~--~~~~~----~-------~   68 (143)
T d1llda1           3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDPEI----C-------R   68 (143)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCGGG----G-------T
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecC--CCHHH----h-------h
Confidence            4666686 9999999999999985  799999988765443333433211 111222221  12211    1       1


Q ss_pred             CeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          108 PLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       108 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      .-|++|..||....+. .+-   .+.+..|.    .+++...+.+.+.    ...+.++.+|...
T Consensus        69 daDvVVitaG~~~~~g-~~R---~dl~~~N~----~i~~~i~~~i~~~----~p~ai~ivvtNPv  121 (143)
T d1llda1          69 DADMVVITAGPRQKPG-QSR---LELVGATV----NILKAIMPNLVKV----APNAIYMLITNPV  121 (143)
T ss_dssp             TCSEEEECCCCCCCTT-CCH---HHHHHHHH----HHHHHHHHHHHHH----CTTSEEEECCSSH
T ss_pred             CCcEEEEecccccCCC-Cch---hhhhhhhH----HHHHHHHHHHHhh----CCCeEEEEeCCch
Confidence            4799999999765432 222   23455554    3444555555543    2346677776643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0024  Score=46.35  Aligned_cols=76  Identities=17%  Similarity=0.119  Sum_probs=57.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCee
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLN  110 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id  110 (255)
                      .++|.|. |-+|..++++|.++|.+|++++.+++...+..++...    ..+.++..|.++++.++++--      ...+
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~i------~~a~   73 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGI------DRCR   73 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTT------TTCS
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhcc------ccCC
Confidence            3677776 7999999999999999999999988766666655543    357889999999876554422      2567


Q ss_pred             EEEEccC
Q 025275          111 ILINNAG  117 (255)
Q Consensus       111 ~lv~~ag  117 (255)
                      .+|-+.+
T Consensus        74 ~vi~~~~   80 (153)
T d1id1a_          74 AILALSD   80 (153)
T ss_dssp             EEEECSS
T ss_pred             EEEEccc
Confidence            8886653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.89  E-value=0.0019  Score=47.47  Aligned_cols=76  Identities=16%  Similarity=0.155  Sum_probs=49.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.+++|.|+ |++|...++-+...|++|+++++++++++... ++     +.. .++  |.++++..+.+.+..    +
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~-~~-----Ga~-~~i--~~~~~~~~~~~~~~~----~   92 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELAR-KL-----GAS-LTV--NARQEDPVEAIQRDI----G   92 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HT-----TCS-EEE--ETTTSCHHHHHHHHH----S
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhh-cc-----Ccc-ccc--cccchhHHHHHHHhh----c
Confidence            4788999886 99999999888889999999999987654332 22     322 233  455544444433322    3


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      +.+.+|-+++
T Consensus        93 g~~~~i~~~~  102 (166)
T d1llua2          93 GAHGVLVTAV  102 (166)
T ss_dssp             SEEEEEECCS
T ss_pred             CCcccccccc
Confidence            4566666655

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.85  E-value=0.0031  Score=46.67  Aligned_cols=78  Identities=19%  Similarity=0.249  Sum_probs=49.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.+++|.|+ |++|...++.+...|+ .|+++++++++++...    +.  +. .+++  |-.+ +.++...+...  .
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~----~~--ga-~~~i--~~~~-~~~~~~~~~~~--~   98 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE----RL--GA-DHVV--DARR-DPVKQVMELTR--G   98 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH----HT--TC-SEEE--ETTS-CHHHHHHHHTT--T
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHh----hc--cc-ceee--cCcc-cHHHHHHHhhC--C
Confidence            4788999886 9999998888888887 5677777766543332    22  22 2333  3333 33444444322  2


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      .++|++|.++|.
T Consensus        99 ~g~d~vid~~g~  110 (172)
T d1h2ba2          99 RGVNVAMDFVGS  110 (172)
T ss_dssp             CCEEEEEESSCC
T ss_pred             CCceEEEEecCc
Confidence            369999999984

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.81  E-value=0.00075  Score=50.16  Aligned_cols=45  Identities=18%  Similarity=0.333  Sum_probs=38.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAI   73 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~   73 (255)
                      ++|.|+|.|+ ||.+++++..|.+.|+ +|.++.|+.++.+.+.+.+
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~   61 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY   61 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence            6788999987 8999999999999997 6999999988877666554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.80  E-value=0.00052  Score=51.34  Aligned_cols=41  Identities=27%  Similarity=0.227  Sum_probs=35.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHH
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVR   70 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~   70 (255)
                      +|++.|.|+ |.+|.++|..|+++|++|.+.+|+++..+...
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~   41 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ   41 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            478899998 89999999999999999999999877654443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00073  Score=45.04  Aligned_cols=38  Identities=21%  Similarity=0.264  Sum_probs=34.0

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      +++||+++|.|. |.-|.++|+.|.++|++|++.+.+..
T Consensus         2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            578999999988 66899999999999999999998654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.75  E-value=0.0069  Score=43.47  Aligned_cols=116  Identities=11%  Similarity=0.063  Sum_probs=66.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHHHHHhhC--CCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVREAIVKEI--PSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++.|.|+ |.+|.++|..|+.+|.  ++++.+++++.++.....+....  -+........  .|++    .       .
T Consensus         2 KI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~--~d~~----~-------~   67 (142)
T d1ojua1           2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYS----L-------L   67 (142)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCGG----G-------G
T ss_pred             EEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccC--CCHH----H-------h
Confidence            4667786 9999999999999884  69999998876544333333211  1112222221  1121    1       1


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ...|++|..||....+. .+   -.+.+..|.    .+++...+.+.+.    ...+.++.+|...
T Consensus        68 ~~adiVvitag~~~~~g-~~---r~~l~~~n~----~i~~~i~~~i~~~----~p~aivivvtNPv  121 (142)
T d1ojua1          68 KGSEIIVVTAGLARKPG-MT---RLDLAHKNA----GIIKDIAKKIVEN----APESKILVVTNPM  121 (142)
T ss_dssp             TTCSEEEECCCCCCCSS-CC---HHHHHHHHH----HHHHHHHHHHHTT----STTCEEEECSSSH
T ss_pred             ccccEEEEeccccCCCC-Cc---hHHHHHHhh----HHHHHHHHHHHhh----CCCcEEEEecCCh
Confidence            25799999999765432 22   223333333    3455555555542    2356777776644

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.73  E-value=0.00028  Score=54.27  Aligned_cols=43  Identities=23%  Similarity=0.287  Sum_probs=37.2

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHH
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKD   68 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~   68 (255)
                      .+++||+++|-| -|.+|..+|+.|.+.|++|++.+.+.+.+..
T Consensus        23 ~~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~   65 (201)
T d1c1da1          23 GSLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAH   65 (201)
T ss_dssp             CCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHH
Confidence            369999999997 7789999999999999999999987765443

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0012  Score=50.28  Aligned_cols=45  Identities=20%  Similarity=0.228  Sum_probs=38.8

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHh
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVK   75 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~   75 (255)
                      |++.|.|+ |-+|..||..++..|++|++.+++++.++...+.+.+
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~   49 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEE   49 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHH
Confidence            67889998 7899999999999999999999999877766665543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.68  E-value=0.0054  Score=45.55  Aligned_cols=80  Identities=15%  Similarity=0.176  Sum_probs=53.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHH-HHHHHHHHHhc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLA-SVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-si~~~~~~~~~  104 (255)
                      -.|.+++|.|+ |++|...++.+...|+ +|+++++++++++... ++     +.. ..+  |.++.+ .+.......  
T Consensus        26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~-~l-----Ga~-~~i--~~~~~d~~~~~~~~~~--   93 (174)
T d1p0fa2          26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-EL-----GAT-ECL--NPKDYDKPIYEVICEK--   93 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HT-----TCS-EEE--CGGGCSSCHHHHHHHH--
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHH-Hc-----CCc-EEE--cCCCchhHHHHHHHHh--
Confidence            35789999986 8999999999999997 6889999887764443 22     322 233  333222 233333333  


Q ss_pred             CCCCeeEEEEccCC
Q 025275          105 QGRPLNILINNAGI  118 (255)
Q Consensus       105 ~~g~id~lv~~ag~  118 (255)
                      ..+++|++|-++|.
T Consensus        94 ~~~G~d~vid~~g~  107 (174)
T d1p0fa2          94 TNGGVDYAVECAGR  107 (174)
T ss_dssp             TTSCBSEEEECSCC
T ss_pred             cCCCCcEEEEcCCC
Confidence            23479999999884

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.67  E-value=0.0033  Score=45.21  Aligned_cols=117  Identities=15%  Similarity=0.129  Sum_probs=65.5

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhC--CCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEI--PSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +++.|.|+ |.+|.++|..|+.++. ++++.+.+++........+....  .........+  .|++.           .
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~--~d~~~-----------~   67 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NNYAD-----------T   67 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCGGG-----------G
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEec--CcHHH-----------h
Confidence            45677786 9999999999999885 89999988876544333332110  0112222211  11111           1


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ..-|++|.+||....+...    -.+.+..|.    .+++...+.+.+.    ...+.++.+|...
T Consensus        68 ~~advvvitag~~~~~~~~----r~dl~~~N~----~i~~~i~~~i~k~----~p~aivivvtNPv  121 (142)
T d1uxja1          68 ANSDVIVVTSGAPRKPGMS----REDLIKVNA----DITRACISQAAPL----SPNAVIIMVNNPL  121 (142)
T ss_dssp             TTCSEEEECCSCC-------------CHHHHH----HHHHHHHHHHGGG----CTTCEEEECSSSH
T ss_pred             cCCCEEEEeeeccCCcCcc----hhHHHhHHH----HHHHHHHHHHhcc----CCCceEEEeCCch
Confidence            2579999999976543221    122344443    4666666777653    3456777766643

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.01  Score=40.71  Aligned_cols=74  Identities=16%  Similarity=0.156  Sum_probs=56.6

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      +...+.++.|.| +|=+|+-++....+.|+++++.+.+.+....          ..--.++..|..|.+.+..+..+.  
T Consensus         7 ~~~~~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~PA~----------~va~~~i~~~~~d~~~l~~~~~~~--   73 (111)
T d1kjqa2           7 LRPAATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAPAM----------HVAHRSHVINMLDGDALRRVVELE--   73 (111)
T ss_dssp             TSTTCCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCGGG----------GGSSEEEECCTTCHHHHHHHHHHH--
T ss_pred             CCCCCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCchh----------hcCCeEEECCCCCHHHHHHHHHhh--
Confidence            344566899999 5679999999999999999999988764211          011257888999999999988865  


Q ss_pred             CCCCeeEEEE
Q 025275          105 QGRPLNILIN  114 (255)
Q Consensus       105 ~~g~id~lv~  114 (255)
                         .+|++.+
T Consensus        74 ---~~DviT~   80 (111)
T d1kjqa2          74 ---KPHYIVP   80 (111)
T ss_dssp             ---CCSEEEE
T ss_pred             ---CCceEEE
Confidence               5788863

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.61  E-value=0.002  Score=44.46  Aligned_cols=61  Identities=10%  Similarity=0.138  Sum_probs=43.5

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS   91 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   91 (255)
                      .++++||+++|.|++. +|..-++.|++.|++|++.+.....  +. ..+..   ..++.+.+-+..+
T Consensus         7 ~l~l~~k~vlVvG~G~-va~~ka~~ll~~ga~v~v~~~~~~~--~~-~~~~~---~~~i~~~~~~~~~   67 (113)
T d1pjqa1           7 FCQLRDRDCLIVGGGD-VAERKARLLLEAGARLTVNALTFIP--QF-TVWAN---EGMLTLVEGPFDE   67 (113)
T ss_dssp             EECCBTCEEEEECCSH-HHHHHHHHHHHTTBEEEEEESSCCH--HH-HHHHT---TTSCEEEESSCCG
T ss_pred             EEEeCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeccCCh--HH-HHHHh---cCCceeeccCCCH
Confidence            3578999999999865 9999999999999999998765542  11 12222   3356666655543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.56  E-value=0.0033  Score=46.06  Aligned_cols=40  Identities=15%  Similarity=0.148  Sum_probs=33.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKD   68 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~   68 (255)
                      .|.+++|.|+ |++|...++.+...|++|+++++++++++.
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~   66 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLEL   66 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhh
Confidence            4678999875 899999888888899999999988877543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.55  E-value=0.0057  Score=45.41  Aligned_cols=85  Identities=16%  Similarity=0.147  Sum_probs=58.3

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHH---------------HHhhCCCCceEEEEeCCCCHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA---------------IVKEIPSAKVDAMELDVSSLAS   94 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~---------------~~~~~~~~~~~~~~~Dl~~~~s   94 (255)
                      +.+-|.|- |-+|..+|+.|+++|++|++.+|++++.+++.++               +....  .....+...+.+.+.
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ii~~~~~~~~   79 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKL--KKPRRIILLVKAGQA   79 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHB--CSSCEEEECSCTTHH
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhh--cccceEEEecCchHH
Confidence            34556665 8999999999999999999999999887766543               11111  122344456677777


Q ss_pred             HHHHHHHHhcCCCCeeEEEEccC
Q 025275           95 VRKFASEYNSQGRPLNILINNAG  117 (255)
Q Consensus        95 i~~~~~~~~~~~g~id~lv~~ag  117 (255)
                      +..+.+.+......=+++|.+..
T Consensus        80 v~~v~~~l~~~~~~g~iiid~sT  102 (176)
T d2pgda2          80 VDNFIEKLVPLLDIGDIIIDGGN  102 (176)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECSC
T ss_pred             HHHHHHHHHhccccCcEEEecCc
Confidence            88888777655444466776654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.52  E-value=0.019  Score=41.56  Aligned_cols=118  Identities=13%  Similarity=0.049  Sum_probs=62.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC-------eEEEEEeccc--hHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           31 TAIVTGASSGIGTETARVLALRGV-------HVIMAVRNMA--AGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~-------~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ++.|+||+|.+|.+++..|++.+.       .+++.+.+..  .++....++.... ......+..  ++.  ....++ 
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~-~~~~~~~~~--~~~--~~~~~~-   78 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA-LPLLKDVIA--TDK--EEIAFK-   78 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC-CTTEEEEEE--ESC--HHHHTT-
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccc-ccccccccc--Ccc--cccccC-
Confidence            699999999999999999987542       3555554432  2222222222211 112222222  211  112222 


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCC
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSE  171 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~  171 (255)
                            ..|++|.++|....+.+...+    .++.|.    .+++...+.+.+.   .+..+.+|.+|..
T Consensus        79 ------~~dvVVitag~~~~~g~sr~d----ll~~N~----~i~k~~~~~i~k~---a~~~~~iivvsNP  131 (154)
T d5mdha1          79 ------DLDVAILVGSMPRRDGMERKD----LLKANV----KIFKCQGAALDKY---AKKSVKVIVVGNP  131 (154)
T ss_dssp             ------TCSEEEECCSCCCCTTCCTTT----THHHHH----HHHHHHHHHHHHH---SCTTCEEEECSSS
T ss_pred             ------CceEEEEecccCCCCCCchhH----HHHHhH----HHHHHHHHHHHhh---CCCceEEEEecCc
Confidence                  589999999987654433332    233343    4455555555442   1234556666653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.50  E-value=0.0025  Score=48.44  Aligned_cols=80  Identities=19%  Similarity=0.133  Sum_probs=50.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.+|+|.|+ |++|...+..+...|+ .|+++++++++++.. +++     +..  .+ .|-.+++ +...+.++. ..
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a-~~~-----Ga~--~~-~~~~~~~-~~~~i~~~t-~g   92 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KAQ-----GFE--IA-DLSLDTP-LHEQIAALL-GE   92 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT-----TCE--EE-ETTSSSC-HHHHHHHHH-SS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhh-hhc-----ccc--EE-EeCCCcC-HHHHHHHHh-CC
Confidence            4789999986 8999888887777887 688888887664333 222     322  22 2333333 333333332 23


Q ss_pred             CCeeEEEEccCCC
Q 025275          107 RPLNILINNAGIM  119 (255)
Q Consensus       107 g~id~lv~~ag~~  119 (255)
                      .++|++|.+.|..
T Consensus        93 ~g~D~vid~vG~~  105 (195)
T d1kola2          93 PEVDCAVDAVGFE  105 (195)
T ss_dssp             SCEEEEEECCCTT
T ss_pred             CCcEEEEECcccc
Confidence            4699999999854

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.43  E-value=0.004  Score=45.25  Aligned_cols=121  Identities=13%  Similarity=0.119  Sum_probs=70.3

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhh--CCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKE--IPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .++.|.|+ |.+|.++|..|+..+. ++++.+++++.++.....+...  ....+......|  +++           ..
T Consensus         4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~~-----------~~   69 (150)
T d1t2da1           4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TYD-----------DL   69 (150)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CGG-----------GG
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--ccc-----------cc
Confidence            45777785 9999999998888875 7999999887765554444321  012233333322  221           11


Q ss_pred             CCeeEEEEccCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCc
Q 025275          107 RPLNILINNAGIMASPFMLSK-DNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEA  172 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~-~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~  172 (255)
                      ..-|++|.++|....+-+.+. .+-.+.++.|.    -+++.+.+.+.+.    ...+.++++|...
T Consensus        70 ~~advvvitag~~~~~g~~~~~~~R~~l~~~N~----~iv~~i~~~i~~~----~p~aivivvtNPv  128 (150)
T d1t2da1          70 AGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNN----KIMIEIGGHIKKN----CPNAFIIVVTNPV  128 (150)
T ss_dssp             TTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHH----HHHHHHHHHHHHH----CTTSEEEECSSSH
T ss_pred             CCCcEEEEecccccCCCCCccccchhHHHHHHH----HHHHHHHHHHHhc----CCCeEEEEecCch
Confidence            257999999997654322211 11122344444    4555555555553    2356777777744

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0017  Score=55.50  Aligned_cols=64  Identities=20%  Similarity=0.271  Sum_probs=51.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++.+|||.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+.+.+++..|+.++..+.
T Consensus        35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  113 (426)
T d1yovb1          35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  113 (426)
T ss_dssp             HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred             HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence            56778999999 6799999999999998 69999863                   335667778888887777777777


Q ss_pred             eCCCC
Q 025275           87 LDVSS   91 (255)
Q Consensus        87 ~Dl~~   91 (255)
                      .++.+
T Consensus       114 ~~i~~  118 (426)
T d1yovb1         114 NKIQD  118 (426)
T ss_dssp             SCGGG
T ss_pred             ccccc
Confidence            66654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.41  E-value=0.0059  Score=45.36  Aligned_cols=80  Identities=19%  Similarity=0.199  Sum_probs=51.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.+|+|.|+ |+||...++.+...|+ .|++++++++++ +..+++     +.. ..+...-.+ +.+....+...  .
T Consensus        28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~-~~a~~~-----Ga~-~~i~~~~~~-~~~~~~~~~~~--~   96 (174)
T d1e3ia2          28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKAL-----GAT-DCLNPRELD-KPVQDVITELT--A   96 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHT-----TCS-EEECGGGCS-SCHHHHHHHHH--T
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHH-HHHHHh-----CCC-cccCCccch-hhhhhhHhhhh--c
Confidence            5788999975 9999999999999998 588888887764 333333     221 223211111 22333333332  3


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +++|++|.++|.
T Consensus        97 ~G~d~vie~~G~  108 (174)
T d1e3ia2          97 GGVDYSLDCAGT  108 (174)
T ss_dssp             SCBSEEEESSCC
T ss_pred             CCCcEEEEeccc
Confidence            479999999984

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0049  Score=48.38  Aligned_cols=81  Identities=14%  Similarity=0.276  Sum_probs=60.0

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAME   86 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~   86 (255)
                      +++++|+|.| .||+|..++..|++.|. ++.++|.+                   ..+.+.+.+.+++..|+.++..+.
T Consensus        28 L~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~  106 (247)
T d1jw9b_          28 LKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  106 (247)
T ss_dssp             HHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhh
Confidence            6789999999 57899999999999997 68888853                   346677777788887777777766


Q ss_pred             eCCCCHHHHHHHHHHHhcCCCCeeEEEEcc
Q 025275           87 LDVSSLASVRKFASEYNSQGRPLNILINNA  116 (255)
Q Consensus        87 ~Dl~~~~si~~~~~~~~~~~g~id~lv~~a  116 (255)
                      ..++. +.....+.       ..|++|.+.
T Consensus       107 ~~~~~-~~~~~~~~-------~~divid~~  128 (247)
T d1jw9b_         107 ALLDD-AELAALIA-------EHDLVLDCT  128 (247)
T ss_dssp             SCCCH-HHHHHHHH-------TSSEEEECC
T ss_pred             hhhhh-cccccccc-------ccceeeecc
Confidence            55554 33444444       468888655

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.29  E-value=0.0018  Score=48.84  Aligned_cols=82  Identities=15%  Similarity=0.103  Sum_probs=54.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc-----
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS-----  104 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~-----  104 (255)
                      |++.|.|+ |-+|..||..|+..|++|++.+++.+.++...+.+.....    ....-....+...+.....+.-     
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~----~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLV----GRVDKGRMTPAKMAEVLNGIRPTLSYG   79 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHH----HHHTTTSSCHHHHHHHHHHEEEESSST
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHH----hhhcccccchhhhhhhhceeecccccc
Confidence            56888888 7899999999999999999999999887776666543210    0011123345556666665431     


Q ss_pred             CCCCeeEEEEcc
Q 025275          105 QGRPLNILINNA  116 (255)
Q Consensus       105 ~~g~id~lv~~a  116 (255)
                      .....|+++-+.
T Consensus        80 ~~~~adlViEav   91 (186)
T d1wdka3          80 DFGNVDLVVEAV   91 (186)
T ss_dssp             TGGGCSEEEECC
T ss_pred             cccccceeeeee
Confidence            123457777654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.20  E-value=0.013  Score=43.13  Aligned_cols=79  Identities=15%  Similarity=0.193  Sum_probs=49.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHH-HHHHHHHHHhcC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLA-SVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-si~~~~~~~~~~  105 (255)
                      .|.+++|.|+ |++|...+..++..|+ +|+++++++++++... ++     +. .+.+  |.++++ .+++..+.... 
T Consensus        28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~-~~-----GA-d~~i--n~~~~~~~~~~~~~~~~~-   96 (175)
T d1cdoa2          28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF-----GA-TDFV--NPNDHSEPISQVLSKMTN-   96 (175)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT-----TC-CEEE--CGGGCSSCHHHHHHHHHT-
T ss_pred             CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHH-Hc-----CC-cEEE--cCCCcchhHHHHHHhhcc-
Confidence            5788999986 6688888888888887 6888888887754433 22     32 2333  332222 23333333322 


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                       +++|+++.++|.
T Consensus        97 -~G~d~vid~~G~  108 (175)
T d1cdoa2          97 -GGVDFSLECVGN  108 (175)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCcceeeeecCC
Confidence             379999999984

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.04  E-value=0.0079  Score=43.92  Aligned_cols=85  Identities=18%  Similarity=0.172  Sum_probs=52.9

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC-----CCceEEEEeCCCCHHHHHHHHH---HHh
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP-----SAKVDAMELDVSSLASVRKFAS---EYN  103 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~si~~~~~---~~~  103 (255)
                      +-|. |.|-+|..+|+.|+++|++|++.+|++++.++..+.-.....     -.+..++-.-+.+.+.++.++.   .+.
T Consensus         3 IgiI-GlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~   81 (161)
T d1vpda2           3 VGFI-GLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGII   81 (161)
T ss_dssp             EEEE-CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHH
T ss_pred             EEEE-ehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchh
Confidence            4445 558999999999999999999999998876665442110000     0123445556777787877763   233


Q ss_pred             cCCCCeeEEEEccC
Q 025275          104 SQGRPLNILINNAG  117 (255)
Q Consensus       104 ~~~g~id~lv~~ag  117 (255)
                      .....=.++|.+..
T Consensus        82 ~~~~~g~iiid~sT   95 (161)
T d1vpda2          82 EGAKPGTVLIDMSS   95 (161)
T ss_dssp             HHCCTTCEEEECSC
T ss_pred             hccCCCCEEEECCC
Confidence            22222355665553

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.01  Score=43.67  Aligned_cols=44  Identities=32%  Similarity=0.342  Sum_probs=38.9

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAG   66 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~   66 (255)
                      ...++.||.++|.|-|.-+|+-++.-|.++|++|.++......+
T Consensus        31 y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l   74 (166)
T d1b0aa1          31 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNL   74 (166)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCH
T ss_pred             cCcccccceEEEEeccccccHHHHHHHHHhhccccccccccchh
Confidence            45678999999999999999999999999999999887766544

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.84  E-value=0.012  Score=44.04  Aligned_cols=43  Identities=26%  Similarity=0.206  Sum_probs=36.6

Q ss_pred             ccCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch
Q 025275           22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA   65 (255)
Q Consensus        22 ~~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~   65 (255)
                      ....++.+|++.|.| .|.||+++++.+...|++|+..++....
T Consensus        37 ~~~~~l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~   79 (184)
T d1ygya1          37 FSGTEIFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSP   79 (184)
T ss_dssp             CCBCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCH
T ss_pred             cccccccceeeeecc-ccchhHHHHHHhhhccceEEeecCCCCh
Confidence            445678899999988 5899999999999999999999887543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.0039  Score=45.09  Aligned_cols=38  Identities=11%  Similarity=0.163  Sum_probs=33.7

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN   62 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~   62 (255)
                      -..++||++||.|| |.+|..-++.|++.|++|.+++..
T Consensus         8 ~~~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           8 AHQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             heeeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35689999999999 569999999999999999999754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.72  E-value=0.034  Score=40.91  Aligned_cols=41  Identities=20%  Similarity=0.245  Sum_probs=34.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA   72 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~   72 (255)
                      |+-+|  |.|-+|.++|++|+++|++|.+.+|++++.+++.++
T Consensus         3 kIGvI--GlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~   43 (178)
T d1pgja2           3 DVGVV--GLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA   43 (178)
T ss_dssp             SEEEE--CCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred             EEEEE--eehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence            34444  778999999999999999999999999887777665

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.70  E-value=0.056  Score=40.78  Aligned_cols=78  Identities=23%  Similarity=0.145  Sum_probs=58.0

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ...+++|+++|=.|+++|   .++.+++..|+ +|+.++.+++.++...+.+...  +.+..++..|+.+.         
T Consensus        41 ~~~dl~g~~vLDlg~GtG---~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~--~~~~~~~~~d~~~~---------  106 (201)
T d1wy7a1          41 SLGDIEGKVVADLGAGTG---VLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF--KGKFKVFIGDVSEF---------  106 (201)
T ss_dssp             HTTSSTTCEEEEETCTTC---HHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG--TTSEEEEESCGGGC---------
T ss_pred             hcCCCCCCEEEECcCcch---HHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc--CCCceEEECchhhh---------
Confidence            345689999998888877   34455667886 7999999988877777776554  56778888886432         


Q ss_pred             HhcCCCCeeEEEEccCC
Q 025275          102 YNSQGRPLNILINNAGI  118 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~  118 (255)
                          .+++|++|.|..+
T Consensus       107 ----~~~fD~Vi~nPP~  119 (201)
T d1wy7a1         107 ----NSRVDIVIMNPPF  119 (201)
T ss_dssp             ----CCCCSEEEECCCC
T ss_pred             ----CCcCcEEEEcCcc
Confidence                3579999988754

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.01  Score=43.84  Aligned_cols=45  Identities=22%  Similarity=0.245  Sum_probs=39.9

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGK   67 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~   67 (255)
                      ...+++||.++|.|-|.-+|+-++.-|+++|++|.++......+.
T Consensus        33 ~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~   77 (170)
T d1a4ia1          33 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD   77 (170)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH
T ss_pred             hCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHH
Confidence            456789999999999999999999999999999999987766543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.0066  Score=44.14  Aligned_cols=35  Identities=20%  Similarity=0.180  Sum_probs=31.5

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA   65 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~   65 (255)
                      ++++|.|+ |.+|..++..|++.|++|.+++|+.+.
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            35888888 999999999999999999999998764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.18  E-value=0.025  Score=41.17  Aligned_cols=85  Identities=11%  Similarity=-0.011  Sum_probs=52.2

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC-----CCceEEEEeCCCCHHHHHHHHHHH---h
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP-----SAKVDAMELDVSSLASVRKFASEY---N  103 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~si~~~~~~~---~  103 (255)
                      |-+. |.|-+|.++|++|+++|++|.+.+|+.++.+.....-.....     ......+-.-+.+.+.++.++...   .
T Consensus         4 Ig~I-GlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~~   82 (162)
T d3cuma2           4 IAFI-GLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLL   82 (162)
T ss_dssp             EEEE-CCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCHH
T ss_pred             EEEE-EEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccccc
Confidence            4444 679999999999999999999999997765544322110000     112345555677777777776542   2


Q ss_pred             cCCCCeeEEEEccC
Q 025275          104 SQGRPLNILINNAG  117 (255)
Q Consensus       104 ~~~g~id~lv~~ag  117 (255)
                      ....+=+++|.+..
T Consensus        83 ~~l~~g~iiid~st   96 (162)
T d3cuma2          83 AHIAPGTLVLECST   96 (162)
T ss_dssp             HHSCTTCEEEECSC
T ss_pred             ccCCCCCEEEECCC
Confidence            22222245665554

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.11  E-value=0.066  Score=43.50  Aligned_cols=119  Identities=14%  Similarity=0.114  Sum_probs=71.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|++||=.++..|   .++..+++.|+ +|+.++.+++.++...+.+....-..++.++..|+.+      .+.......
T Consensus       145 ~g~~VLDl~~g~G---~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~------~~~~~~~~~  215 (324)
T d2as0a2         145 PGDRVLDVFTYTG---GFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE------EMEKLQKKG  215 (324)
T ss_dssp             TTCEEEETTCTTT---HHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH------HHHHHHHTT
T ss_pred             CCCeeecccCccc---chhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhh------hhHHHHhcc
Confidence            4888886666544   23344556776 7999999998888888877765333467888777643      233333345


Q ss_pred             CCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecC
Q 025275          107 RPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSS  170 (255)
Q Consensus       107 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS  170 (255)
                      .++|++|.+...+.    .+.......    ......+++.+++.++       .+|.+++.|.
T Consensus       216 ~~fD~Vi~DpP~~~----~~~~~~~~~----~~~y~~l~~~a~~ll~-------pGG~lv~~s~  264 (324)
T d2as0a2         216 EKFDIVVLDPPAFV----QHEKDLKAG----LRAYFNVNFAGLNLVK-------DGGILVTCSC  264 (324)
T ss_dssp             CCEEEEEECCCCSC----SSGGGHHHH----HHHHHHHHHHHHTTEE-------EEEEEEEEEC
T ss_pred             CCCCchhcCCcccc----CCHHHHHHH----HHHHHHHHHHHHHHcC-------CCcEEEEEeC
Confidence            67999998865332    222222222    2233445555555554       3677666553

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.09  E-value=0.028  Score=42.29  Aligned_cols=41  Identities=17%  Similarity=0.122  Sum_probs=35.8

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      ...++.||++.|.| -|.||+.+|+.|...|++|+..++...
T Consensus        43 ~~~eL~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          43 GAARIRGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             TCCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             CceeeeCceEEEec-cccccccceeeeeccccceeeccCccc
Confidence            45679999999996 579999999999999999999988654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.99  E-value=0.022  Score=43.04  Aligned_cols=40  Identities=20%  Similarity=0.121  Sum_probs=34.9

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      +-++.||++.|.|- |.||+.+|+.|...|++|+..++...
T Consensus        38 g~el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          38 GREVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             BCCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CccccCCeEEEecc-cccchhHHHhHhhhcccccccCcccc
Confidence            45688999999985 68999999999999999999987654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.94  E-value=0.044  Score=40.93  Aligned_cols=69  Identities=17%  Similarity=0.122  Sum_probs=46.5

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHH-------HHhhCCCCceEEEEeCCCCH
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREA-------IVKEIPSAKVDAMELDVSSL   92 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~Dl~~~   92 (255)
                      .+.+++++++.|.| .|.||+++++.|...|++|+..++...........       +........+..+.+.++++
T Consensus        38 ~~~~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~  113 (188)
T d2naca1          38 HAYDLEAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPE  113 (188)
T ss_dssp             TCCCCTTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTT
T ss_pred             cceeccccceeecc-ccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhccccccc
Confidence            45678999999998 57899999999999999999999864322111110       11111234566777777764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=94.81  E-value=0.019  Score=41.33  Aligned_cols=40  Identities=15%  Similarity=0.250  Sum_probs=32.8

Q ss_pred             EEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHH
Q 025275           32 AIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREA   72 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~   72 (255)
                      +.+.|+ |.+|.++++.|.+.| .+|++.+|+.++++...++
T Consensus         3 I~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~   43 (152)
T d1yqga2           3 VYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE   43 (152)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH
T ss_pred             EEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh
Confidence            556655 999999999999988 7899999998876665554

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.80  E-value=0.034  Score=41.77  Aligned_cols=82  Identities=10%  Similarity=0.059  Sum_probs=60.9

Q ss_pred             CcEEE-EecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           29 GLTAI-VTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        29 ~k~vl-ItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +.++| +|.|+||...+|.+.+ . +.+|+.+|++++.+....+.+...  +.++.++..++.+..   ..+....  .+
T Consensus        24 ~~~~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~~~--~~r~~~~~~~f~~~~---~~~~~~~--~~   94 (192)
T d1m6ya2          24 EKIILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKEF--SDRVSLFKVSYREAD---FLLKTLG--IE   94 (192)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGGG--TTTEEEEECCGGGHH---HHHHHTT--CS
T ss_pred             CCEEEEecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhccc--cccccchhHHHhhHH---HHHHHcC--CC
Confidence            34444 8889999988888876 3 468999999998877777766554  568999999888743   3334322  35


Q ss_pred             CeeEEEEccCCC
Q 025275          108 PLNILINNAGIM  119 (255)
Q Consensus       108 ~id~lv~~ag~~  119 (255)
                      .+|.++..-|+.
T Consensus        95 ~vdgIl~DlGvS  106 (192)
T d1m6ya2          95 KVDGILMDLGVS  106 (192)
T ss_dssp             CEEEEEEECSCC
T ss_pred             Ccceeeeccchh
Confidence            799999998864

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.70  E-value=0.22  Score=39.94  Aligned_cols=77  Identities=14%  Similarity=0.080  Sum_probs=54.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+|++||-.|++.|+   ++..++++|+ +|+.++.++ ......+......-..++.++..|+.+.+          ..
T Consensus        32 ~~~~~VLDiGcG~G~---ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~n~~~~~v~~~~~~~~~~~----------~~   97 (316)
T d1oria_          32 FKDKVVLDVGSGTGI---LCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVE----------LP   97 (316)
T ss_dssp             HTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC----------CS
T ss_pred             CCcCEEEEEecCCcH---HHHHHHHhCCCEEEEEcCcH-HHhhhhhHHHHhCCccccceEeccHHHcc----------cc
Confidence            478999999999885   5667888886 698888775 45555555544433567999999887742          12


Q ss_pred             CCCeeEEEEccC
Q 025275          106 GRPLNILINNAG  117 (255)
Q Consensus       106 ~g~id~lv~~ag  117 (255)
                      ...+|+++....
T Consensus        98 ~~~~D~ivs~~~  109 (316)
T d1oria_          98 VEKVDIIISEWM  109 (316)
T ss_dssp             SSCEEEEEECCC
T ss_pred             cceeEEEeeeee
Confidence            347899987643

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.70  E-value=0.073  Score=40.99  Aligned_cols=77  Identities=9%  Similarity=-0.028  Sum_probs=58.4

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ..+.++++|=.|++.|.   ++..|+++|.+|+.++.+++-++...+.....  +.++.++..|+.+.+           
T Consensus        34 ~~~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~--~~~v~~~~~d~~~~~-----------   97 (246)
T d1y8ca_          34 NNLVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ--GLKPRLACQDISNLN-----------   97 (246)
T ss_dssp             TTCCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECCCGGGCC-----------
T ss_pred             hCCCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhcccccccc--Cccceeeccchhhhc-----------
Confidence            34667899999999984   78899999999999999987777666666554  557889988886532           


Q ss_pred             CCCCeeEEEEccC
Q 025275          105 QGRPLNILINNAG  117 (255)
Q Consensus       105 ~~g~id~lv~~ag  117 (255)
                      ..+.+|+++...+
T Consensus        98 ~~~~fD~i~~~~~  110 (246)
T d1y8ca_          98 INRKFDLITCCLD  110 (246)
T ss_dssp             CSCCEEEEEECTT
T ss_pred             ccccccccceeee
Confidence            1246998886543

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.66  E-value=0.042  Score=38.40  Aligned_cols=73  Identities=16%  Similarity=0.253  Sum_probs=52.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEE-EeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      ++.|.|++|-+|+++++.+.+.|++++.. +++....          ....+   +-.|++.++.....++.+.+.  ++
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~~----------~~~~D---VvIDFS~p~~~~~~l~~~~~~--~~   66 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVEE----------LDSPD---VVIDFSSPEALPKTVDLCKKY--RA   66 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEEE----------CSCCS---EEEECSCGGGHHHHHHHHHHH--TC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHHH----------hccCC---EEEEecCHHHHHHHHHHHHhc--CC
Confidence            58999999999999999999999986544 4332210          11222   345999999998888877665  46


Q ss_pred             eEEEEccCC
Q 025275          110 NILINNAGI  118 (255)
Q Consensus       110 d~lv~~ag~  118 (255)
                      -+|+-..|.
T Consensus        67 p~ViGTTG~   75 (128)
T d1vm6a3          67 GLVLGTTAL   75 (128)
T ss_dssp             EEEECCCSC
T ss_pred             CEEEEcCCC
Confidence            677777763

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.27  Score=39.18  Aligned_cols=76  Identities=11%  Similarity=0.088  Sum_probs=54.9

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+||+||-.|++.|+   ++..++++|+ +|+.++.++. +....+...+.....++.++..|+.+..          ..
T Consensus        34 ~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~-~~~a~~~~~~~~~~~~i~~~~~~~~~l~----------~~   99 (311)
T d2fyta1          34 FKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEI-LYQAMDIIRLNKLEDTITLIKGKIEEVH----------LP   99 (311)
T ss_dssp             TTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTH-HHHHHHHHHHTTCTTTEEEEESCTTTSC----------CS
T ss_pred             CCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHH-HHHHHHHHHHhCCCccceEEEeeHHHhc----------Cc
Confidence            578999999999885   5667888897 6999987764 4455555555444568999999887742          12


Q ss_pred             CCCeeEEEEcc
Q 025275          106 GRPLNILINNA  116 (255)
Q Consensus       106 ~g~id~lv~~a  116 (255)
                      ...+|+++...
T Consensus       100 ~~~~D~Ivse~  110 (311)
T d2fyta1         100 VEKVDVIISEW  110 (311)
T ss_dssp             CSCEEEEEECC
T ss_pred             cccceEEEEee
Confidence            24799998754

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.50  E-value=0.11  Score=41.94  Aligned_cols=82  Identities=17%  Similarity=0.120  Sum_probs=54.1

Q ss_pred             CCcEEEEe-cCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhC-CCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           28 TGLTAIVT-GASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-PSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        28 ~~k~vlIt-G~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ++++||=. .++|+++.    .+++.|++|+.++.+...++...+...... ...++.++..|+.+      .+++...+
T Consensus       132 ~~~rVLdlf~~tG~~sl----~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~------~l~~~~~~  201 (309)
T d2igta1         132 RPLKVLNLFGYTGVASL----VAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK------FIQREERR  201 (309)
T ss_dssp             SCCEEEEETCTTCHHHH----HHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHH------HHHHHHHH
T ss_pred             CCCeEEEecCCCcHHHH----HHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHH------hHHHHhhc
Confidence            57788844 44454443    456789999999999888877777765442 23468888877653      33433334


Q ss_pred             CCCeeEEEEccCCC
Q 025275          106 GRPLNILINNAGIM  119 (255)
Q Consensus       106 ~g~id~lv~~ag~~  119 (255)
                      ..++|+||.....+
T Consensus       202 ~~~fD~IilDPP~f  215 (309)
T d2igta1         202 GSTYDIILTDPPKF  215 (309)
T ss_dssp             TCCBSEEEECCCSE
T ss_pred             CCCCCEEEECCCcc
Confidence            45799999876433

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.49  E-value=0.19  Score=37.54  Aligned_cols=76  Identities=14%  Similarity=0.084  Sum_probs=56.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .+.+||=.|+++|.   ++..|++.|++|+.++.+.+.++...+.....  +.++.++..|..+..          ...+
T Consensus        37 ~~~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~--~~~~~~~~~d~~~l~----------~~~~  101 (226)
T d1ve3a1          37 KRGKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAKSR--ESNVEFIVGDARKLS----------FEDK  101 (226)
T ss_dssp             SCCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCCEEEECCTTSCC----------SCTT
T ss_pred             CCCEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhccc--ccccccccccccccc----------ccCc
Confidence            34578999999984   77889999999999999987777766666655  456778888877632          1224


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      .+|+++....+
T Consensus       102 ~fD~I~~~~~l  112 (226)
T d1ve3a1         102 TFDYVIFIDSI  112 (226)
T ss_dssp             CEEEEEEESCG
T ss_pred             CceEEEEecch
Confidence            79998876543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.031  Score=40.80  Aligned_cols=40  Identities=25%  Similarity=0.308  Sum_probs=35.6

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      ....+.||+++|.|= |.||+.+|+.|...|++|++++.++
T Consensus        18 t~~~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          18 TDVMIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             HCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hCceecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeeccc
Confidence            356789999999975 5899999999999999999999886

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.30  E-value=0.034  Score=40.97  Aligned_cols=40  Identities=30%  Similarity=0.248  Sum_probs=36.3

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEec
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRN   62 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~   62 (255)
                      ...+++||.++|.|-|.-+|+-++..|+++|+.|..+..+
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            4458999999999999999999999999999999888755

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=94.28  E-value=0.048  Score=40.05  Aligned_cols=63  Identities=17%  Similarity=0.079  Sum_probs=47.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhC-----------CCCceEEEEeCCCCH
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-----------PSAKVDAMELDVSSL   92 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Dl~~~   92 (255)
                      ..|.+||..|++.|   ..+..|+++|++|+.++.++..++...+......           .+..+.++..|..+.
T Consensus        19 ~~~~rvLd~GCG~G---~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l   92 (201)
T d1pjza_          19 VPGARVLVPLCGKS---QDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   92 (201)
T ss_dssp             CTTCEEEETTTCCS---HHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             CCCCEEEEecCcCC---HHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccc
Confidence            36789999999998   5788999999999999999887766666553321           123457788888764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.26  E-value=0.025  Score=40.78  Aligned_cols=37  Identities=11%  Similarity=0.217  Sum_probs=31.6

Q ss_pred             CCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHH
Q 025275           37 ASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAI   73 (255)
Q Consensus        37 ~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~   73 (255)
                      |.|-+|.++++.|.+.|+++++.+|+.++.++..+++
T Consensus         7 G~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~   43 (152)
T d2ahra2           7 GVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL   43 (152)
T ss_dssp             CCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH
T ss_pred             eccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc
Confidence            6789999999999999999999999988766655544

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.20  E-value=0.033  Score=38.71  Aligned_cols=70  Identities=20%  Similarity=0.216  Sum_probs=47.4

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCe
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPL  109 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~i  109 (255)
                      |-++|.|. |.+|+.++++|.  |.+|++++.+++..+..    ...    .+.++..|.++++.++.+-      ....
T Consensus         1 kHivI~G~-g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~----~~~----~~~~i~Gd~~~~~~L~~a~------i~~A   63 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLRELR--GSEVFVLAEDENVRKKV----LRS----GANFVHGDPTRVSDLEKAN------VRGA   63 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTSC--GGGEEEEESCTTHHHHH----HHT----TCEEEESCTTSHHHHHHTT------CTTC
T ss_pred             CEEEEECC-CHHHHHHHHHHc--CCCCEEEEcchHHHHHH----Hhc----CccccccccCCHHHHHHhh------hhcC
Confidence            34677765 789999999994  55788888887754332    222    4678899999987665431      1246


Q ss_pred             eEEEEcc
Q 025275          110 NILINNA  116 (255)
Q Consensus       110 d~lv~~a  116 (255)
                      +.+|-+.
T Consensus        64 ~~vi~~~   70 (129)
T d2fy8a1          64 RAVIVNL   70 (129)
T ss_dssp             SEEEECC
T ss_pred             cEEEEec
Confidence            7777544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.11  E-value=0.28  Score=34.77  Aligned_cols=79  Identities=13%  Similarity=0.134  Sum_probs=54.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .++|+.+|=.|+++|   ++..+.+++|+ +|+.++.+.+..+...+.+.......++.+++.|..+      .++.   
T Consensus        12 ~~~g~~vlDl~~GtG---~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~------~l~~---   79 (152)
T d2esra1          12 YFNGGRVLDLFAGSG---GLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER------AIDC---   79 (152)
T ss_dssp             CCCSCEEEEETCTTC---HHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH------HHHH---
T ss_pred             hCCCCeEEEcCCccC---HHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc------cccc---
Confidence            478999986665555   34445667887 6999999988777777777665444678999888543      2332   


Q ss_pred             CCCCeeEEEEcc
Q 025275          105 QGRPLNILINNA  116 (255)
Q Consensus       105 ~~g~id~lv~~a  116 (255)
                      ..+..|+++...
T Consensus        80 ~~~~fDiIf~DP   91 (152)
T d2esra1          80 LTGRFDLVFLDP   91 (152)
T ss_dssp             BCSCEEEEEECC
T ss_pred             cccccceeEech
Confidence            234789998654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.04  E-value=0.035  Score=40.39  Aligned_cols=41  Identities=15%  Similarity=0.132  Sum_probs=32.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCC--eEEEEEeccchHHHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGV--HVIMAVRNMAAGKDVRE   71 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~~~~~~~~~   71 (255)
                      |.++|.|. |-+|..+|+.|.+.|+  +|+..+++++.++...+
T Consensus         2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~   44 (171)
T d2g5ca2           2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD   44 (171)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH
Confidence            45788875 9999999999999996  68888888776655443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.03  E-value=0.15  Score=37.12  Aligned_cols=77  Identities=17%  Similarity=0.193  Sum_probs=56.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +-.+++|.|+ |-.|++=++...+.|++|.+.|.+.+.++++.....     .++...   ..+++.+.+.++       
T Consensus        31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-----~~~~~~---~~~~~~l~~~~~-------   94 (168)
T d1pjca1          31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVELL---YSNSAEIETAVA-------   94 (168)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEEE---ECCHHHHHHHHH-------
T ss_pred             CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-----ccceee---hhhhhhHHHhhc-------
Confidence            4567888886 578999999999999999999999887766554432     233333   456666776666       


Q ss_pred             CeeEEEEccCCCC
Q 025275          108 PLNILINNAGIMA  120 (255)
Q Consensus       108 ~id~lv~~ag~~~  120 (255)
                      ..|++|.++-++.
T Consensus        95 ~aDivI~aalipG  107 (168)
T d1pjca1          95 EADLLIGAVLVPG  107 (168)
T ss_dssp             TCSEEEECCCCTT
T ss_pred             cCcEEEEeeecCC
Confidence            4699999997663

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=93.99  E-value=0.1  Score=42.18  Aligned_cols=81  Identities=16%  Similarity=0.123  Sum_probs=54.7

Q ss_pred             CCCcEEEEecCC-CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGAS-SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s-~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+|++||=.++. |+++.    +++..+.+|+.++.+...++...+.+.... -.++.++..|..+.      .++....
T Consensus       144 ~~g~rVLDl~~gtG~~s~----~~a~g~~~V~~vD~s~~al~~a~~n~~~ng-l~~~~~i~~d~~~~------~~~~~~~  212 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFAL----HLALGFREVVAVDSSAEALRRAEENARLNG-LGNVRVLEANAFDL------LRRLEKE  212 (318)
T ss_dssp             CCEEEEEEETCTTTHHHH----HHHHHEEEEEEEESCHHHHHHHHHHHHHTT-CTTEEEEESCHHHH------HHHHHHT
T ss_pred             hCCCeeeccCCCCcHHHH----HHHhcCCcEEeecchHHHHHHHHHHHHHcC-CCCcceeeccHHHH------hhhhHhh
Confidence            478899855554 54443    345556789999999988888887776652 24688888877542      2333333


Q ss_pred             CCCeeEEEEccCC
Q 025275          106 GRPLNILINNAGI  118 (255)
Q Consensus       106 ~g~id~lv~~ag~  118 (255)
                      ...+|.||.+...
T Consensus       213 ~~~fD~Vi~DpP~  225 (318)
T d1wxxa2         213 GERFDLVVLDPPA  225 (318)
T ss_dssp             TCCEEEEEECCCC
T ss_pred             hcCCCEEEEcCCc
Confidence            4579999988754

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.96  E-value=0.17  Score=35.54  Aligned_cols=76  Identities=12%  Similarity=0.130  Sum_probs=51.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHc-CCeEEEE-EeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           31 TAIVTGASSGIGTETARVLALR-GVHVIMA-VRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~-G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++.|.|++|-+|+++++...+. +++++.. ++. +.+..    +...  +..   +-.|++.++.+...++.+.+.  +
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~-~~~~~----~~~~--~~D---vvIDFS~p~~~~~~~~~~~~~--~   68 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG-DPLSL----LTDG--NTE---VVIDFTHPDVVMGNLEFLIDN--G   68 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT-CCTHH----HHTT--TCS---EEEECCCTTTHHHHHHHHHHT--T
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-Cchhh----hccc--cCC---EEEEcccHHHHHHHHHHHHhc--C
Confidence            5889999999999999987764 4565443 333 22222    1111  212   346999999998888888765  5


Q ss_pred             eeEEEEccCC
Q 025275          109 LNILINNAGI  118 (255)
Q Consensus       109 id~lv~~ag~  118 (255)
                      +-+|+-..|+
T Consensus        69 ~~~ViGTTG~   78 (135)
T d1yl7a1          69 IHAVVGTTGF   78 (135)
T ss_dssp             CEEEECCCCC
T ss_pred             CCEEEecccc
Confidence            6678866663

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=93.92  E-value=0.091  Score=39.25  Aligned_cols=42  Identities=17%  Similarity=0.019  Sum_probs=35.7

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccch
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAA   65 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~   65 (255)
                      ...+++||++.|.|. |.||+.+++.+...|++|+..++....
T Consensus        41 ~~~~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~   82 (191)
T d1gdha1          41 VGEKLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRAS   82 (191)
T ss_dssp             CBCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred             ccceecccceEEeec-ccchHHHHHHHHhhccccccccccccc
Confidence            456788999999975 689999999999999999999876543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.14  Score=38.00  Aligned_cols=41  Identities=15%  Similarity=0.095  Sum_probs=34.7

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      .+.+++++++.|. |-|.||+.+|+.+...|++|+..++...
T Consensus        38 ~~~~l~~~~vgii-G~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          38 GSFEARGKKLGII-GYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             -CCCSTTCEEEEE-CCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccccccceEEEEe-ecccchhhhhhhcccccceEeecccccc
Confidence            3457899999998 5689999999999999999999997643

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=93.88  E-value=0.059  Score=40.62  Aligned_cols=41  Identities=22%  Similarity=0.122  Sum_probs=35.0

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      ...++.||++.|.|. |.||+.+|+.|...|++|+..++...
T Consensus        39 ~~~~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          39 IGKELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             CCCCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccccccceeeeeeec-ccccccccccccccceeeeccCCccc
Confidence            345788999999986 67999999999999999999998643

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.77  E-value=0.21  Score=36.81  Aligned_cols=82  Identities=18%  Similarity=0.210  Sum_probs=56.0

Q ss_pred             CCCCCcEEEEec-CCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           25 IDGTGLTAIVTG-ASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        25 ~~~~~k~vlItG-~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      ..+.|+++|=.. |+|.+|.    +.+++|+ .|+.++.+.+..+...+.+.......++.++..|+.+      .+++.
T Consensus        38 ~~~~~~~vLDlfaGsG~~g~----ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~------~l~~~  107 (182)
T d2fhpa1          38 PYFDGGMALDLYSGSGGLAI----EAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR------ALEQF  107 (182)
T ss_dssp             SCCSSCEEEETTCTTCHHHH----HHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH------HHHHH
T ss_pred             HhcCCCEEEEcccccccccc----eeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchh------hhhhh
Confidence            356789988444 4454554    5677888 5999999988887777777665434578888888753      34444


Q ss_pred             hcCCCCeeEEEEcc
Q 025275          103 NSQGRPLNILINNA  116 (255)
Q Consensus       103 ~~~~g~id~lv~~a  116 (255)
                      .+....+|+++...
T Consensus       108 ~~~~~~fDlIflDP  121 (182)
T d2fhpa1         108 YEEKLQFDLVLLDP  121 (182)
T ss_dssp             HHTTCCEEEEEECC
T ss_pred             cccCCCcceEEech
Confidence            33445789998554

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.045  Score=47.71  Aligned_cols=58  Identities=16%  Similarity=0.125  Sum_probs=42.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEec-------------------cchHHHHHHHHHhhCCCCceEEE
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRN-------------------MAAGKDVREAIVKEIPSAKVDAM   85 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      +++.+|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+.+.+.+..|..++.++
T Consensus        23 L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~  100 (529)
T d1yova1          23 LESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV  100 (529)
T ss_dssp             HHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEE
T ss_pred             HhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEE
Confidence            45678999987 7899999999999996 68887653                   23556666777776654444443

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.50  E-value=0.07  Score=41.15  Aligned_cols=49  Identities=18%  Similarity=0.186  Sum_probs=41.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAI   73 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~   73 (255)
                      ..+++||+++|-|- |.+|..+|+.|.+.|++|++.+.+....+...+..
T Consensus        34 ~~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~   82 (230)
T d1leha1          34 SDSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE   82 (230)
T ss_dssp             SCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhc
Confidence            46799999999874 68999999999999999999998877766655543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.43  E-value=0.33  Score=35.53  Aligned_cols=76  Identities=20%  Similarity=0.100  Sum_probs=56.0

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.++|=.|+++|   .++..|++.+.+|+.++.+++.++...+.+.+..-..++.++..|..+      .    .....
T Consensus        33 ~g~~VLDiGcGsG---~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~------~----~~~~~   99 (186)
T d1l3ia_          33 KNDVAVDVGCGTG---GVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE------A----LCKIP   99 (186)
T ss_dssp             TTCEEEEESCTTS---HHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH------H----HTTSC
T ss_pred             CCCEEEEEECCeE---cccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh------c----ccccC
Confidence            5788998888877   555667778889999999999888888888776333588999887422      1    12235


Q ss_pred             CeeEEEEcc
Q 025275          108 PLNILINNA  116 (255)
Q Consensus       108 ~id~lv~~a  116 (255)
                      .+|.++.+.
T Consensus       100 ~~D~v~~~~  108 (186)
T d1l3ia_         100 DIDIAVVGG  108 (186)
T ss_dssp             CEEEEEESC
T ss_pred             CcCEEEEeC
Confidence            789998664

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=93.41  E-value=0.25  Score=38.52  Aligned_cols=73  Identities=14%  Similarity=0.128  Sum_probs=54.1

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ..|+++|=.|+++|+   ++..+++.|++|+.++.++..++...+.....  +.++.++..|+.+      .+     ..
T Consensus       119 ~~g~~VLDiGcGsG~---l~i~aa~~g~~V~gvDis~~av~~A~~na~~n--~~~~~~~~~d~~~------~~-----~~  182 (254)
T d2nxca1         119 RPGDKVLDLGTGSGV---LAIAAEKLGGKALGVDIDPMVLPQAEANAKRN--GVRPRFLEGSLEA------AL-----PF  182 (254)
T ss_dssp             CTTCEEEEETCTTSH---HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT--TCCCEEEESCHHH------HG-----GG
T ss_pred             CccCEEEEcccchhH---HHHHHHhcCCEEEEEECChHHHHHHHHHHHHc--CCceeEEeccccc------cc-----cc
Confidence            578999999999985   44567788999999999999888888777665  4456777766421      11     12


Q ss_pred             CCeeEEEEc
Q 025275          107 RPLNILINN  115 (255)
Q Consensus       107 g~id~lv~~  115 (255)
                      +..|+++.|
T Consensus       183 ~~fD~V~an  191 (254)
T d2nxca1         183 GPFDLLVAN  191 (254)
T ss_dssp             CCEEEEEEE
T ss_pred             cccchhhhc
Confidence            579999876

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.41  E-value=0.045  Score=40.46  Aligned_cols=42  Identities=17%  Similarity=0.231  Sum_probs=32.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHh
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVK   75 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~   75 (255)
                      ++.|.|+ |..|.++|..|++.|.+|.+.+|..+.  +..+.+..
T Consensus         2 kI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~--~~~~~i~~   43 (180)
T d1txga2           2 IVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDT--EILKSISA   43 (180)
T ss_dssp             EEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGH--HHHHHHHT
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccH--HHHHHHhh
Confidence            4667776 789999999999999999999986542  34555544

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=93.36  E-value=0.28  Score=33.21  Aligned_cols=82  Identities=12%  Similarity=0.201  Sum_probs=55.8

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ||++||.--...+-..+...|-+.|++|+....+   .++..+.+.+..  ..+.++..++-+.+.+ .+++++++....
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~---~~~al~~~~~~~--~dliilD~~mp~~~G~-e~~~~ir~~~~~   74 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATN---GREAVEKYKELK--PDIVTMDITMPEMNGI-DAIKEIMKIDPN   74 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESS---HHHHHHHHHHHC--CSEEEEECSCGGGCHH-HHHHHHHHHCTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECC---HHHHHHHHHhcc--CCEEEEecCCCCCCHH-HHHHHHHHhCCC
Confidence            7899999999999999999999999998755444   344455555553  3566665555554433 356666665666


Q ss_pred             eeEEEEcc
Q 025275          109 LNILINNA  116 (255)
Q Consensus       109 id~lv~~a  116 (255)
                      +-+++..+
T Consensus        75 ~pvi~ls~   82 (118)
T d1u0sy_          75 AKIIVCSA   82 (118)
T ss_dssp             CCEEEEEC
T ss_pred             CcEEEEEc
Confidence            66666543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.34  E-value=0.27  Score=36.77  Aligned_cols=72  Identities=22%  Similarity=0.143  Sum_probs=51.7

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .-++.||+||=.|+++|   .++..++..|+ +|+.++.+++.++...+    .  ..++.++.+|+.+.          
T Consensus        44 ~~dl~Gk~VLDlGcGtG---~l~i~a~~~ga~~V~~vDid~~a~~~ar~----N--~~~~~~~~~D~~~l----------  104 (197)
T d1ne2a_          44 DGNIGGRSVIDAGTGNG---ILACGSYLLGAESVTAFDIDPDAIETAKR----N--CGGVNFMVADVSEI----------  104 (197)
T ss_dssp             HTSSBTSEEEEETCTTC---HHHHHHHHTTBSEEEEEESCHHHHHHHHH----H--CTTSEEEECCGGGC----------
T ss_pred             cCCCCCCEEEEeCCCCc---HHHHHHHHcCCCcccccccCHHHHHHHHH----c--cccccEEEEehhhc----------
Confidence            34678999999999988   34455777886 59999988765544333    2  23578899998542          


Q ss_pred             hcCCCCeeEEEEccC
Q 025275          103 NSQGRPLNILINNAG  117 (255)
Q Consensus       103 ~~~~g~id~lv~~ag  117 (255)
                         .+++|+||.|..
T Consensus       105 ---~~~fD~Vi~NPP  116 (197)
T d1ne2a_         105 ---SGKYDTWIMNPP  116 (197)
T ss_dssp             ---CCCEEEEEECCC
T ss_pred             ---CCcceEEEeCcc
Confidence               257999998864

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.30  E-value=0.11  Score=39.84  Aligned_cols=74  Identities=15%  Similarity=0.076  Sum_probs=55.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ..+++|=.|+++|   .++..|+++|++|+.++.+++-+....+.+...  +.++.++..|+.+..           -.+
T Consensus        41 ~~~~iLDiGcGtG---~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~--~~~i~~~~~d~~~l~-----------~~~  104 (251)
T d1wzna1          41 EVRRVLDLACGTG---IPTLELAERGYEVVGLDLHEEMLRVARRKAKER--NLKIEFLQGDVLEIA-----------FKN  104 (251)
T ss_dssp             CCCEEEEETCTTC---HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCCEEEESCGGGCC-----------CCS
T ss_pred             CCCEEEEeCCCCC---ccchhhcccceEEEEEeeccccccccccccccc--cccchheehhhhhcc-----------ccc
Confidence            4578999999988   667789999999999999987666666665554  457899999987632           113


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .+|+++..-+
T Consensus       105 ~fD~I~~~~~  114 (251)
T d1wzna1         105 EFDAVTMFFS  114 (251)
T ss_dssp             CEEEEEECSS
T ss_pred             ccchHhhhhh
Confidence            6898876533

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.29  E-value=0.2  Score=35.59  Aligned_cols=37  Identities=16%  Similarity=0.150  Sum_probs=30.0

Q ss_pred             CCcEEEE-ecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           28 TGLTAIV-TGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        28 ~~k~vlI-tG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      -++.++| -.+++.||.++|..|+++|.+|.++.+...
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            3455554 457799999999999999999999998753

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.13  E-value=0.37  Score=34.94  Aligned_cols=124  Identities=11%  Similarity=0.098  Sum_probs=64.3

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHc-----CCeEEEEEeccchHHHHHHHHHhhC--CCCceEEEEeCCCCHHHHHHHHHH
Q 025275           29 GLTAIVTGASSGIGTETARVLALR-----GVHVIMAVRNMAAGKDVREAIVKEI--PSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~-----G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ..++.|.||++.-...+...++.+     +.++++.|.++++++...+.+....  .+........  +|   ..+.++ 
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d---~~eal~-   76 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT--TD---PEEAFT-   76 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE--SC---HHHHHS-
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec--CC---hhhccC-
Confidence            456777788664333344444432     2379999999988764443332211  0222222221  12   222333 


Q ss_pred             HhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhhccCCCCCeE
Q 025275          102 YNSQGRPLNILINNAGIMASPFMLSKDNIELQFATN----------------HLGHFLLTHLLLDTMKKTAQKSSREGRI  165 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n----------------~~~~~~~~~~~~~~~~~~~~~~~~~g~i  165 (255)
                            .-|+||+.+|.....    -.+-.+.+..|                ..-+.-+++.+.+.+.+.    ...+.+
T Consensus        77 ------~AD~Vvitag~~~~~----g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~----~P~A~l  142 (167)
T d1u8xx1          77 ------DVDFVMAHIRVGKYA----MRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY----SPDAWM  142 (167)
T ss_dssp             ------SCSEEEECCCTTHHH----HHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCEE
T ss_pred             ------CCCEEEECCCcCCCC----ceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhh----CCCeEE
Confidence                  579999999975321    11111222222                122344566666777664    346688


Q ss_pred             EEecCCc
Q 025275          166 VNVSSEA  172 (255)
Q Consensus       166 i~vsS~~  172 (255)
                      +++|...
T Consensus       143 i~~TNPv  149 (167)
T d1u8xx1         143 LNYSNPA  149 (167)
T ss_dssp             EECCSCH
T ss_pred             EEeCCHH
Confidence            8887754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=93.10  E-value=0.58  Score=37.53  Aligned_cols=82  Identities=11%  Similarity=0.041  Sum_probs=55.8

Q ss_pred             CCCcEEEEe-cCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           27 GTGLTAIVT-GASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIP-SAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        27 ~~~k~vlIt-G~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      -.|++||=. .++|+++.    +++..|+ .|+.++.+...++...+.+....- ..++.++..|+-+      .+++..
T Consensus       143 ~~g~~VLdlf~~~G~~sl----~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~------~l~~~~  212 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSV----AAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD------YFKYAR  212 (317)
T ss_dssp             TBTCEEEEETCTTTHHHH----HHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH------HHHHHH
T ss_pred             hCCCceeecCCCCcHHHH----HHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHH------HHHHHH
Confidence            368888844 44555443    3556777 699999999888888888765432 3468899888743      344444


Q ss_pred             cCCCCeeEEEEccCC
Q 025275          104 SQGRPLNILINNAGI  118 (255)
Q Consensus       104 ~~~g~id~lv~~ag~  118 (255)
                      +...++|++|.....
T Consensus       213 ~~~~~fD~Ii~DPP~  227 (317)
T d2b78a2         213 RHHLTYDIIIIDPPS  227 (317)
T ss_dssp             HTTCCEEEEEECCCC
T ss_pred             hhcCCCCEEEEcChh
Confidence            455679999988643

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.01  E-value=0.032  Score=41.77  Aligned_cols=38  Identities=26%  Similarity=0.188  Sum_probs=31.4

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKD   68 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~   68 (255)
                      +++.|.||+ ..|.++|..|++.|.+|.+.+|+++..+.
T Consensus         8 ~KI~ViGaG-~wGtAlA~~La~~g~~V~l~~r~~~~~~~   45 (189)
T d1n1ea2           8 NKAVVFGSG-AFGTALAMVLSKKCREVCVWHMNEEEVRL   45 (189)
T ss_dssp             EEEEEECCS-HHHHHHHHHHHTTEEEEEEECSCHHHHHH
T ss_pred             ceEEEECCC-HHHHHHHHHHHHcCCeEEEEEecHHHHHH
Confidence            457788765 58999999999999999999998765443

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.83  E-value=0.59  Score=33.30  Aligned_cols=83  Identities=17%  Similarity=0.157  Sum_probs=53.8

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCC---CHHHHHHHHHHHh
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS---SLASVRKFASEYN  103 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~---~~~si~~~~~~~~  103 (255)
                      .+|+++.|.+.+||.|--.+..+.+.|.++.-.      .++..+++++..|..-..--++|++   +.+....+++.+.
T Consensus         1 P~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l------~~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~   74 (163)
T d2csua3           1 PRGNKVAIMTNAGGPGVLTADELDKRGLKLATL------EEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLL   74 (163)
T ss_dssp             CSSSEEEEEESCHHHHHHHHHHHHTTTCEECCC------CHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECChHHHHHHHHHHHHcCCccCCC------CHHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHH
Confidence            368899999999999999999999999776222      2344555655555332222344543   4556666776655


Q ss_pred             cCCCCeeEEEEcc
Q 025275          104 SQGRPLNILINNA  116 (255)
Q Consensus       104 ~~~g~id~lv~~a  116 (255)
                      + .+.+|.++...
T Consensus        75 ~-d~~vd~v~v~~   86 (163)
T d2csua3          75 Q-DPNVDMLIAIC   86 (163)
T ss_dssp             H-STTCSEEEEEE
T ss_pred             c-CCCcCEEEEee
Confidence            4 35678765443

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.80  E-value=0.24  Score=33.40  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=29.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      |.++|.|| |.+|..+|..|++.|.+|.++.|...
T Consensus        23 ~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence            67777775 69999999999999999999988764

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.78  E-value=0.23  Score=35.37  Aligned_cols=84  Identities=15%  Similarity=0.074  Sum_probs=55.5

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC----CCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP----SAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +-+.|- |-+|.++|++|++.|+.+ +.+|+.++..+..++......    -.+...+-..+.+.+.+....+.+.+...
T Consensus         3 Ig~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~   80 (156)
T d2cvza2           3 VAFIGL-GAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYLR   80 (156)
T ss_dssp             EEEECC-STTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCC
T ss_pred             EEEEeH-HHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhcccccccc
Confidence            444554 899999999999988755 678887776666665432110    01233344466677788888888877666


Q ss_pred             CeeEEEEccC
Q 025275          108 PLNILINNAG  117 (255)
Q Consensus       108 ~id~lv~~ag  117 (255)
                      .-.++|.++-
T Consensus        81 ~~~~iid~sT   90 (156)
T d2cvza2          81 EGTYWVDATS   90 (156)
T ss_dssp             TTEEEEECSC
T ss_pred             cccccccccc
Confidence            6667776664

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.71  E-value=1.1  Score=35.86  Aligned_cols=77  Identities=17%  Similarity=0.095  Sum_probs=53.7

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      .+|++||-.|++.|+   ++..++++|+ .|+.++.++ .+....+.........++.++..|+.+.+          ..
T Consensus        37 ~~~~~VLDlGcGtG~---ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~----------~~  102 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGI---LSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH----------LP  102 (328)
T ss_dssp             HTTCEEEEETCTTSH---HHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC----------CS
T ss_pred             CCcCEEEEeCCCCCH---HHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc----------Cc
Confidence            478999999999884   5667788897 688888764 44444454555444567899999987632          11


Q ss_pred             CCCeeEEEEccC
Q 025275          106 GRPLNILINNAG  117 (255)
Q Consensus       106 ~g~id~lv~~ag  117 (255)
                      ...+|+++...-
T Consensus       103 ~~~~D~i~se~~  114 (328)
T d1g6q1_         103 FPKVDIIISEWM  114 (328)
T ss_dssp             SSCEEEEEECCC
T ss_pred             ccceeEEEEEec
Confidence            246899987653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.70  E-value=0.071  Score=38.07  Aligned_cols=35  Identities=17%  Similarity=0.202  Sum_probs=28.7

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHH
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGK   67 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~   67 (255)
                      +-|. |.|.+|.++|+.|+++|++|++.++..+...
T Consensus         3 IgiI-G~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~   37 (152)
T d1i36a2           3 VGFI-GFGEVAQTLASRLRSRGVEVVTSLEGRSPST   37 (152)
T ss_dssp             EEEE-SCSHHHHHHHHHHHHTTCEEEECCTTCCHHH
T ss_pred             EEEE-cHHHHHHHHHHHHHHCCCeEEEEcCchhHHH
Confidence            4444 5699999999999999999999888776543

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.14  Score=40.86  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=22.0

Q ss_pred             CCchHHHHHHHHHHcCCeEEEEEec
Q 025275           38 SSGIGTETARVLALRGVHVIMAVRN   62 (255)
Q Consensus        38 s~giG~~ia~~L~~~G~~Vi~~~r~   62 (255)
                      ||-.|.++|++|+.+|++|+++.+.
T Consensus        45 SGk~G~alA~~~~~~Ga~V~li~g~   69 (290)
T d1p9oa_          45 SGRRGATSAEAFLAAGYGVLFLYRA   69 (290)
T ss_dssp             CCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             chHHHHHHHHHHHHcCCEEEEEecC
Confidence            5678999999999999999998654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.55  E-value=0.35  Score=36.63  Aligned_cols=79  Identities=16%  Similarity=0.157  Sum_probs=58.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.+||..|+++|--.++..+|+  |.+|+.+.++++-.+...+.+... +-.++.++..|..+.          ....+
T Consensus        78 ~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~-g~~nv~~~~gd~~~g----------~~~~~  144 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERA-GVKNVHVILGDGSKG----------FPPKA  144 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHT-TCCSEEEEESCGGGC----------CGGGC
T ss_pred             ccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHc-CCceeEEEECccccC----------CcccC
Confidence            57899999999999989888876  467999999976556566656554 346899999887641          12235


Q ss_pred             CeeEEEEccCCC
Q 025275          108 PLNILINNAGIM  119 (255)
Q Consensus       108 ~id~lv~~ag~~  119 (255)
                      ..|.++.+++..
T Consensus       145 pfD~Iiv~~a~~  156 (215)
T d1jg1a_         145 PYDVIIVTAGAP  156 (215)
T ss_dssp             CEEEEEECSBBS
T ss_pred             cceeEEeecccc
Confidence            789999888764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.44  E-value=0.1  Score=38.66  Aligned_cols=38  Identities=29%  Similarity=0.266  Sum_probs=34.1

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      .+.||++.|.|.+. ||+.+++.+...|++|+..+|+..
T Consensus        39 ~l~gk~vgIiG~G~-IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          39 LIQGEKVAVLGLGE-IGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             CCTTCEEEEESCST-HHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccCceEEEecccc-ccccceeeeecccccccccccccc
Confidence            48899999999865 999999999999999999998754

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.09  E-value=0.7  Score=32.25  Aligned_cols=86  Identities=9%  Similarity=0.032  Sum_probs=52.8

Q ss_pred             CCcEEEEecCC---CchHHHHHHHHHHcCCeEEEEEeccchHH--HHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           28 TGLTAIVTGAS---SGIGTETARVLALRGVHVIMAVRNMAAGK--DVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        28 ~~k~vlItG~s---~giG~~ia~~L~~~G~~Vi~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      +-|.+.|.|+|   +..|..+++.|.+.|++|+.+........  .....+...  ...+..+.+= ...+.+..+++++
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dl--p~~iD~v~i~-vp~~~~~~~~~e~   94 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDI--PDKIEVVDLF-VKPKLTMEYVEQA   94 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGC--SSCCSEEEEC-SCHHHHHHHHHHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCccccccccc--CccceEEEEE-eCHHHHHHHHHHH
Confidence            45899999999   67999999999999999998876533211  001111111  1112222211 2356677788877


Q ss_pred             hcCCCCeeEEEEccCC
Q 025275          103 NSQGRPLNILINNAGI  118 (255)
Q Consensus       103 ~~~~g~id~lv~~ag~  118 (255)
                      .+.  ++..++...|.
T Consensus        95 ~~~--g~k~v~~~~G~  108 (139)
T d2d59a1          95 IKK--GAKVVWFQYNT  108 (139)
T ss_dssp             HHH--TCSEEEECTTC
T ss_pred             HHh--CCCEEEEeccc
Confidence            765  35566666664

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=92.07  E-value=0.095  Score=41.05  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=32.7

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR   61 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r   61 (255)
                      ..+++|++++|.| .|.+|..+++.|.+.|++|+.++-
T Consensus        31 ~~~l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          31 NDTLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             TCCSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence            4578999999999 699999999999999999887653

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=92.04  E-value=1.2  Score=31.54  Aligned_cols=47  Identities=17%  Similarity=0.167  Sum_probs=35.2

Q ss_pred             cEEEEecCCCchHHHHHHHHHHc--CCeEEEEEeccchHHHHHHHHHhhC
Q 025275           30 LTAIVTGASSGIGTETARVLALR--GVHVIMAVRNMAAGKDVREAIVKEI   77 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~   77 (255)
                      |++.|.|+||.||.....-+.+.  .++|+.+.-+. +.+.+.+++.+..
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~-N~~~L~~q~~~f~   50 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK-NVTRMVEQCLEFS   50 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC-cHHHHHHHHHHHh
Confidence            67999999999999999888776  36777775443 4466666666653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.03  E-value=0.094  Score=39.35  Aligned_cols=33  Identities=21%  Similarity=0.152  Sum_probs=28.4

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccch
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAA   65 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~   65 (255)
                      +.|. |.|.+|..+|..|+++|++|++.+.+.+.
T Consensus         3 I~Vi-GlG~vGl~~a~~la~~g~~V~g~D~n~~~   35 (202)
T d1mv8a2           3 ISIF-GLGYVGAVCAGCLSARGHEVIGVDVSSTK   35 (202)
T ss_dssp             EEEE-CCSTTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             EEEE-CCCHhHHHHHHHHHhCCCcEEEEeCCHHH
Confidence            4445 78999999999999999999999988654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.98  E-value=0.51  Score=35.44  Aligned_cols=80  Identities=10%  Similarity=0.063  Sum_probs=56.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.+||-.|+++|--.++..++...+..|+.++.+++..+...+.+... .-.++.++..|..+.          ....+
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~-~~~n~~~~~~d~~~~----------~~~~~  143 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL-GIENVIFVCGDGYYG----------VPEFS  143 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT-TCCSEEEEESCGGGC----------CGGGC
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh-cccccccccCchHHc----------ccccc
Confidence            4789999999988776666666555668999999988777777776654 234677777665431          11124


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      .+|+++.+++.
T Consensus       144 ~fD~I~~~~~~  154 (213)
T d1dl5a1         144 PYDVIFVTVGV  154 (213)
T ss_dssp             CEEEEEECSBB
T ss_pred             chhhhhhhccH
Confidence            68999988765

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=91.93  E-value=0.13  Score=39.14  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=29.0

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      .|+|+|.|| |-.|...|.+|+++|++|.++.|..
T Consensus         6 ~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGS-GVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            356888876 6889999999999999999999864

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.077  Score=40.54  Aligned_cols=80  Identities=10%  Similarity=0.083  Sum_probs=53.7

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhh----------------CCCCceEEEEeCCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKE----------------IPSAKVDAMELDVS   90 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~~Dl~   90 (255)
                      ..+.+||..|++.|   ..+..|+++|++|+.++-++..++...++....                ..+.++.++.+|+.
T Consensus        44 ~~~~rvLd~GCG~G---~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          44 KSGLRVFFPLCGKA---VEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             CCSCEEEETTCTTC---THHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCEEEEeCCCCc---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            36789999999998   678889999999999999887655444443211                11346777887776


Q ss_pred             CHHHHHHHHHHHhcCCCCeeEEEEccCC
Q 025275           91 SLASVRKFASEYNSQGRPLNILINNAGI  118 (255)
Q Consensus        91 ~~~si~~~~~~~~~~~g~id~lv~~ag~  118 (255)
                      +..         ....+.+|+++-....
T Consensus       121 ~l~---------~~~~~~fd~i~~~~~l  139 (229)
T d2bzga1         121 DLP---------RTNIGKFDMIWDRGAL  139 (229)
T ss_dssp             GGG---------GSCCCCEEEEEESSST
T ss_pred             hcc---------ccccCceeEEEEEEEE
Confidence            422         1223467777765543

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=91.86  E-value=0.74  Score=36.02  Aligned_cols=78  Identities=15%  Similarity=0.135  Sum_probs=53.3

Q ss_pred             cEEEEecCCCc-hHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSG-IGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~g-iG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ++++-.|+++| |+.+++ +  ...++|+.++.+++.+.-..+......-..++.+...|+.+.         ..+.+++
T Consensus       112 ~~vld~g~GsG~i~~~la-~--~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~---------~~~~~~~  179 (271)
T d1nv8a_         112 KTVADIGTGSGAIGVSVA-K--FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---------FKEKFAS  179 (271)
T ss_dssp             CEEEEESCTTSHHHHHHH-H--HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---------GGGGTTT
T ss_pred             cEEEEeeeeeehhhhhhh-h--cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc---------cccccCc
Confidence            45664555555 555543 3  245789999999998888888877653345677778888643         2334578


Q ss_pred             eeEEEEccCCC
Q 025275          109 LNILINNAGIM  119 (255)
Q Consensus       109 id~lv~~ag~~  119 (255)
                      +|++|.|..+.
T Consensus       180 fDlIVsNPPYI  190 (271)
T d1nv8a_         180 IEMILSNPPYV  190 (271)
T ss_dssp             CCEEEECCCCB
T ss_pred             ccEEEEccccc
Confidence            99999998755

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.81  E-value=0.14  Score=35.07  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=30.0

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      ++.++|.|| |.+|.++|..|+++|.+|.++.++..
T Consensus        30 ~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence            567777765 79999999999999999999998754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.74  E-value=0.17  Score=34.72  Aligned_cols=35  Identities=29%  Similarity=0.210  Sum_probs=29.7

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      +.|.++|.| +|.+|..+|..|++.|.+|.++.+..
T Consensus        29 ~~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEEC-ChHHHHHHHHHhhccceEEEEEEecC
Confidence            457777775 56999999999999999999998864

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.61  E-value=0.068  Score=41.45  Aligned_cols=34  Identities=24%  Similarity=0.227  Sum_probs=28.9

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      +|+|+|.||+ --|...|.+|+++|++|.++.++.
T Consensus         1 ~KkV~IIGaG-~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAG-VSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCS-HHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcC-HHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5888888764 568999999999999999998754

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=91.54  E-value=0.096  Score=41.85  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=24.2

Q ss_pred             cEEEEecCCCchHH-----HHHHHHHHcCCeEEEEEec
Q 025275           30 LTAIVTGASSGIGT-----ETARVLALRGVHVIMAVRN   62 (255)
Q Consensus        30 k~vlItG~s~giG~-----~ia~~L~~~G~~Vi~~~r~   62 (255)
                      |++||++|++| |.     +|+++|.++|++|.+++..
T Consensus         1 kkili~~~GtG-GHv~~a~al~~~L~~~G~eV~~i~~~   37 (351)
T d1f0ka_           1 KRLMVMAGGTG-GHVFPGLAVAHHLMAQGWQVRWLGTA   37 (351)
T ss_dssp             CEEEEECCSSH-HHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred             CEEEEEcCCcH-HHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            56677666545 65     5889999999999887754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.50  E-value=0.26  Score=33.64  Aligned_cols=33  Identities=21%  Similarity=0.184  Sum_probs=28.7

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      |.++|.|| |.||..+|..|++.|.+|.++.+..
T Consensus        24 ~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECC-CchHHHHHHHHHhhCcceeEEEecc
Confidence            56777775 6999999999999999999998865

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.13  Score=35.30  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      |.++|.||+ .||..+|..|++.|.+|.++.|+.
T Consensus        23 k~vvIvGgG-~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAG-YIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcCC-ccHHHHHHHHhcCCcEEEEEeecc
Confidence            678888875 799999999999999999999874

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.04  E-value=0.16  Score=40.39  Aligned_cols=38  Identities=18%  Similarity=0.115  Sum_probs=33.3

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR   61 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r   61 (255)
                      ...+++||+++|-|- |.+|..+|+.|.+.|++|+.++-
T Consensus        30 l~~~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          30 MTPGFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             CCSSSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence            345789999999987 79999999999999999887764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.79  E-value=0.6  Score=34.24  Aligned_cols=76  Identities=14%  Similarity=0.146  Sum_probs=54.2

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +...+||=.|++.|   ..+..|+++|++|+.++.+++.++...+..... +-..+.+...|+.+..     +      .
T Consensus        29 ~~~grvLDiGcG~G---~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~d~~~~~-----~------~   93 (198)
T d2i6ga1          29 VAPGRTLDLGCGNG---RNSLYLAANGYDVTAWDKNPASMANLERIKAAE-GLDNLQTDLVDLNTLT-----F------D   93 (198)
T ss_dssp             SCSCEEEEETCTTS---HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCTTEEEEECCTTTCC-----C------C
T ss_pred             CCCCcEEEECCCCC---HHHHHHHHHhhhhccccCcHHHHHHHHHHhhhc-cccchhhhheeccccc-----c------c
Confidence            34557999999766   477889999999999999987777666555543 2235778888877642     1      1


Q ss_pred             CCeeEEEEccC
Q 025275          107 RPLNILINNAG  117 (255)
Q Consensus       107 g~id~lv~~ag  117 (255)
                      +.+|+++.+.-
T Consensus        94 ~~fD~I~~~~~  104 (198)
T d2i6ga1          94 GEYDFILSTVV  104 (198)
T ss_dssp             CCEEEEEEESC
T ss_pred             ccccEEEEeee
Confidence            36898886554

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=90.73  E-value=0.16  Score=39.38  Aligned_cols=36  Identities=28%  Similarity=0.234  Sum_probs=32.1

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVR   61 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r   61 (255)
                      .+++|++++|-| .|.+|.++|+.|.+.|++|+.++-
T Consensus        27 ~~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1          27 GGIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             SCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence            478999999997 789999999999999999887764

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=90.53  E-value=0.71  Score=31.05  Aligned_cols=81  Identities=15%  Similarity=0.300  Sum_probs=54.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      ||++||.--...+-..+.+.|.+.|++|..+..    ..+..+.+.+..+  .+.++...+-+.+.+ .+++++++....
T Consensus         1 NkrILvVDD~~~~~~~l~~~L~~~g~~v~~a~~----g~eal~~~~~~~~--dlillD~~mP~~~G~-el~~~lr~~~~~   73 (119)
T d1peya_           1 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAAN----GLQALDIVTKERP--DLVLLDMKIPGMDGI-EILKRMKVIDEN   73 (119)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESS----HHHHHHHHHHHCC--SEEEEESCCTTCCHH-HHHHHHHHHCTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEeCC----HHHHHHHHHhCCC--CEEEEeccCCCCCHH-HHHHHHHHhCCC
Confidence            578999999999999999999999999876543    3444555555532  456665555554433 356666665556


Q ss_pred             eeEEEEcc
Q 025275          109 LNILINNA  116 (255)
Q Consensus       109 id~lv~~a  116 (255)
                      +-+++..+
T Consensus        74 ~pvi~lt~   81 (119)
T d1peya_          74 IRVIIMTA   81 (119)
T ss_dssp             CEEEEEES
T ss_pred             CcEEEEec
Confidence            66666554

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.89  Score=34.34  Aligned_cols=82  Identities=21%  Similarity=0.109  Sum_probs=59.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCC----CCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIP----SAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      .|.+||-.|+++|.-.++..++.....+|+.++++++-.+...+.+.....    ..++.+...|..+.          .
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~----------~  145 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG----------Y  145 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC----------C
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc----------c
Confidence            478999999999988888888887778999999998877777776654321    23567777775421          1


Q ss_pred             cCCCCeeEEEEccCCC
Q 025275          104 SQGRPLNILINNAGIM  119 (255)
Q Consensus       104 ~~~g~id~lv~~ag~~  119 (255)
                      ...+.+|.++.+++..
T Consensus       146 ~~~~~fD~I~~~~~~~  161 (224)
T d1i1na_         146 AEEAPYDAIHVGAAAP  161 (224)
T ss_dssp             GGGCCEEEEEECSBBS
T ss_pred             chhhhhhhhhhhcchh
Confidence            1124689999888753

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.42  E-value=0.22  Score=33.78  Aligned_cols=34  Identities=29%  Similarity=0.136  Sum_probs=29.4

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      +.++|.|| |.||..+|..|++.|.+|.++.+...
T Consensus        23 ~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCceEEEEeecc
Confidence            66888875 69999999999999999999987643

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=90.25  E-value=0.33  Score=34.99  Aligned_cols=40  Identities=15%  Similarity=0.192  Sum_probs=35.2

Q ss_pred             cCCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           23 QGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        23 ~~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      ...-+.||+++|.|= |.+|+.+|++|...|++|+++..++
T Consensus        17 t~~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          17 TDFLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             HCCCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             hCceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCc
Confidence            345688999999875 6899999999999999999999887

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=90.24  E-value=0.4  Score=34.70  Aligned_cols=78  Identities=15%  Similarity=0.177  Sum_probs=47.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      +|+++|=.|+++|   .++.+++++|++|+.++.+++..+...+.++..  +....+...   +.+.   ..........
T Consensus        41 ~g~~vLDl~~G~G---~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~--~~~~~v~~~---~~d~---~~~~~~~~~~  109 (171)
T d1ws6a1          41 RRGRFLDPFAGSG---AVGLEAASEGWEAVLVEKDPEAVRLLKENVRRT--GLGARVVAL---PVEV---FLPEAKAQGE  109 (171)
T ss_dssp             TCCEEEEETCSSC---HHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH--TCCCEEECS---CHHH---HHHHHHHTTC
T ss_pred             CCCeEEEeccccc---hhhhhhhhccchhhhcccCHHHHhhhhHHHHhh--ccccceeee---ehhc---ccccccccCC
Confidence            6777875555544   244566778999999999998888777777765  222223222   2221   2222333345


Q ss_pred             CeeEEEEcc
Q 025275          108 PLNILINNA  116 (255)
Q Consensus       108 ~id~lv~~a  116 (255)
                      .+|+++.+.
T Consensus       110 ~fD~If~DP  118 (171)
T d1ws6a1         110 RFTVAFMAP  118 (171)
T ss_dssp             CEEEEEECC
T ss_pred             ccceeEEcc
Confidence            799998764

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.21  E-value=0.1  Score=38.98  Aligned_cols=31  Identities=16%  Similarity=0.154  Sum_probs=27.8

Q ss_pred             cEEEEecCCCchHHH-----HHHHHHHcCCeEEEEE
Q 025275           30 LTAIVTGASSGIGTE-----TARVLALRGVHVIMAV   60 (255)
Q Consensus        30 k~vlItG~s~giG~~-----ia~~L~~~G~~Vi~~~   60 (255)
                      |+++|||-++|+|+.     +|+.|+++|.+|.+++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            789999999999985     6789999999999986

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=90.17  E-value=0.19  Score=38.34  Aligned_cols=37  Identities=30%  Similarity=0.158  Sum_probs=30.5

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      .+.++|+|.|| |--|..+|..|+++|.+|.++.|+.+
T Consensus         2 ~~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           2 PTTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            34577888887 46789999999999999999998643

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.02  E-value=1  Score=34.29  Aligned_cols=37  Identities=27%  Similarity=0.367  Sum_probs=31.1

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHH-cCCeEEEEEe
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLAL-RGVHVIMAVR   61 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~-~G~~Vi~~~r   61 (255)
                      ..++++++++|-| .|.+|..+|+.|.+ .|+.|+.++-
T Consensus        26 ~~~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1          26 GIDPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             TCCTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             CCCcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeec
Confidence            4578999999986 88999999999975 6999887763

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=89.96  E-value=0.67  Score=35.17  Aligned_cols=75  Identities=13%  Similarity=0.032  Sum_probs=51.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      .|.+||-.|+++|.-.++   |++.+.+|+.+.++++..+...+.+ ..  ..++.++..|....          ....+
T Consensus        70 ~g~~VLdIG~GsGy~ta~---La~l~~~V~aiE~~~~~~~~A~~~~-~~--~~nv~~~~~d~~~g----------~~~~~  133 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTAL---IAEIVDKVVSVEINEKMYNYASKLL-SY--YNNIKLILGDGTLG----------YEEEK  133 (224)
T ss_dssp             TTCEEEEECCTTSHHHHH---HHHHSSEEEEEESCHHHHHHHHHHH-TT--CSSEEEEESCGGGC----------CGGGC
T ss_pred             ccceEEEecCCCCHHHHH---HHHHhcccccccccHHHHHHHHHHH-hc--ccccccccCchhhc----------chhhh
Confidence            478999999999965544   6666778999998876555544433 33  35788888887541          11135


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      +.|.++.+++.
T Consensus       134 pfD~Iiv~~a~  144 (224)
T d1vbfa_         134 PYDRVVVWATA  144 (224)
T ss_dssp             CEEEEEESSBB
T ss_pred             hHHHHHhhcch
Confidence            78999988875

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.61  E-value=0.16  Score=37.02  Aligned_cols=35  Identities=17%  Similarity=0.144  Sum_probs=29.1

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccc
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMA   64 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~   64 (255)
                      +|+|+|.|| |-.|...|..|+++|+ .|.+..++..
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            577888876 5889999999999998 4988888643

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=89.19  E-value=0.76  Score=34.24  Aligned_cols=76  Identities=13%  Similarity=0.062  Sum_probs=54.0

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +++||=.|++.|   ..+..|+++|++|+.++.+++-++...+.+... +..++.++..|..+..     +     ..+.
T Consensus        16 ~~rVLDiGcG~G---~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~-~~~~i~~~~~d~~~l~-----~-----~~~~   81 (231)
T d1vl5a_          16 NEEVLDVATGGG---HVANAFAPFVKKVVAFDLTEDILKVARAFIEGN-GHQQVEYVQGDAEQMP-----F-----TDER   81 (231)
T ss_dssp             CCEEEEETCTTC---HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT-TCCSEEEEECCC-CCC-----S-----CTTC
T ss_pred             cCEEEEecccCc---HHHHHHHHhCCEEEEEECCHHHHhhhhhccccc-cccccccccccccccc-----c-----cccc
Confidence            578999999988   445778899999999999887666555555443 2457889998887631     1     1247


Q ss_pred             eeEEEEccCC
Q 025275          109 LNILINNAGI  118 (255)
Q Consensus       109 id~lv~~ag~  118 (255)
                      +|+++.+..+
T Consensus        82 fD~v~~~~~l   91 (231)
T d1vl5a_          82 FHIVTCRIAA   91 (231)
T ss_dssp             EEEEEEESCG
T ss_pred             cccccccccc
Confidence            8988877654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.14  E-value=0.26  Score=33.22  Aligned_cols=34  Identities=24%  Similarity=0.137  Sum_probs=28.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      |.++|.| +|.+|..+|..|++.|.+|.++.|...
T Consensus        22 ~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVG-AGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEC-CChhhHHHHHHhhccccEEEEEeecch
Confidence            5566665 479999999999999999999998753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=89.08  E-value=0.17  Score=39.17  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=27.1

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      |+|.|| |-.|..+|.+|+++|.+|++++++.
T Consensus         7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            677764 7999999999999999999999864

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.92  E-value=0.11  Score=36.07  Aligned_cols=77  Identities=18%  Similarity=0.143  Sum_probs=54.1

Q ss_pred             CCcEEEEecCCC----------chHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHH
Q 025275           28 TGLTAIVTGASS----------GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRK   97 (255)
Q Consensus        28 ~~k~vlItG~s~----------giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~   97 (255)
                      ..|++||.|++.          .-+.+.+++|.+.|++++++..|++......+.      .+++.+.+  ++ .+.+.+
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d~------aD~lYfeP--lt-~e~v~~   76 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEM------ADATYIEP--IH-WEVVRK   76 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGG------SSEEECSC--CC-HHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChhh------cceeeeec--CC-HHHHHH
Confidence            348899999863          346788999999999999999998875332221      33444433  33 567888


Q ss_pred             HHHHHhcCCCCeeEEEEccCC
Q 025275           98 FASEYNSQGRPLNILINNAGI  118 (255)
Q Consensus        98 ~~~~~~~~~g~id~lv~~ag~  118 (255)
                      ++++-     ++|.++-..|.
T Consensus        77 Ii~~E-----~pd~il~~~GG   92 (127)
T d1a9xa3          77 IIEKE-----RPDAVLPTMGG   92 (127)
T ss_dssp             HHHHH-----CCSEEECSSSH
T ss_pred             HHHHh-----CcCCeEEEeee
Confidence            88864     79999876663

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.60  E-value=0.22  Score=37.55  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=30.3

Q ss_pred             CCcEEEEecCCCchHHH-----HHHHHHHcCCeEEEEEec
Q 025275           28 TGLTAIVTGASSGIGTE-----TARVLALRGVHVIMAVRN   62 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~-----ia~~L~~~G~~Vi~~~r~   62 (255)
                      .+|++.|+|+-||+|+.     +|..|+++|.+|.++|-+
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            36899999999999985     677899999999999855

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=88.50  E-value=0.34  Score=32.63  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      .+|.++|.|| |.+|..+|..|++.|.+|.++.|...
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence            3577777765 79999999999999999999988754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.23  E-value=0.23  Score=33.98  Aligned_cols=76  Identities=17%  Similarity=0.055  Sum_probs=52.3

Q ss_pred             CcEEEEecCCC----------chHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHH
Q 025275           29 GLTAIVTGASS----------GIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        29 ~k~vlItG~s~----------giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      .|++||.|++.          .-+.+.++.|.+.|++++++..|++......+.      .+++.+.  .++ .+.+..+
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~d~------aD~lYfe--plt-~e~v~~I   74 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDT------SDRLYFE--PVT-LEDVLEI   74 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTS------SSEEECC--CCS-HHHHHHH
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcChhh------cCceEEc--cCC-HHHHHHH
Confidence            57899999864          346788999999999999999998864322110      2333333  333 5667777


Q ss_pred             HHHHhcCCCCeeEEEEccCC
Q 025275           99 ASEYNSQGRPLNILINNAGI  118 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~  118 (255)
                      ++.=     ++|.++-.-|.
T Consensus        75 i~~E-----~p~~ii~~~GG   89 (121)
T d1a9xa4          75 VRIE-----KPKGVIVQYGG   89 (121)
T ss_dssp             HHHH-----CCSEEECSSST
T ss_pred             HHHh-----CCCEEEeehhh
Confidence            7754     68888876664

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.23  E-value=0.21  Score=37.11  Aligned_cols=31  Identities=19%  Similarity=0.216  Sum_probs=27.3

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      |+|.| +|--|...|.+|+++|.+|.++.++.
T Consensus         8 viViG-aG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLG-TGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            77887 57889999999999999999998864

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.16  E-value=0.29  Score=39.12  Aligned_cols=36  Identities=22%  Similarity=0.229  Sum_probs=30.3

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      ++|+++|.|| |--|..+|.+|+++|.+|.+..++..
T Consensus         1 k~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            4688899886 46789999999999999999987754

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=88.08  E-value=0.82  Score=32.38  Aligned_cols=48  Identities=27%  Similarity=0.291  Sum_probs=36.2

Q ss_pred             cEEEEecCCCchHHHHHHHHHHc--CCeEEEEEeccchHHHHHHHHHhhCC
Q 025275           30 LTAIVTGASSGIGTETARVLALR--GVHVIMAVRNMAAGKDVREAIVKEIP   78 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~   78 (255)
                      |++.|.|+||-||.+...-+.+.  .++|+.+.-+. +.+.+.++.....|
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~-N~~~L~~q~~ef~P   52 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR-NVKDLADAAKRTNA   52 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS-CHHHHHHHHHHTTC
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC-CHHHHHHHHHhhcc
Confidence            78999999999999998888775  47777776543 45666666666533

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.07  E-value=1.9  Score=28.86  Aligned_cols=83  Identities=19%  Similarity=0.200  Sum_probs=48.5

Q ss_pred             cEEEEecCC---CchHHHHHHHHHHcCCeEEEEEeccchHH--HHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           30 LTAIVTGAS---SGIGTETARVLALRGVHVIMAVRNMAAGK--DVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        30 k~vlItG~s---~giG~~ia~~L~~~G~~Vi~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      |.+.|.|+|   +-.|..+.+.|.+.|++|+.+..+.+...  .....+.. .+. .+...-+ ....+.+..+++++.+
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~-lp~-~~D~vvi-~vp~~~~~~~l~~~~~   78 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRE-LPK-DVDVIVF-VVPPKVGLQVAKEAVE   78 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGG-SCT-TCCEEEE-CSCHHHHHHHHHHHHH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchh-ccc-cceEEEE-EeCHHHHHHHHHHHHh
Confidence            678999998   56899999999999999988875533210  00000111 111 1222211 1335667778887776


Q ss_pred             CCCCeeEEEEccC
Q 025275          105 QGRPLNILINNAG  117 (255)
Q Consensus       105 ~~g~id~lv~~ag  117 (255)
                      .  ++..++...|
T Consensus        79 ~--g~k~v~~~~g   89 (116)
T d1y81a1          79 A--GFKKLWFQPG   89 (116)
T ss_dssp             T--TCCEEEECTT
T ss_pred             c--CCceEEeccc
Confidence            5  3445555444

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=87.70  E-value=1.9  Score=31.15  Aligned_cols=78  Identities=13%  Similarity=0.072  Sum_probs=53.5

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      .+.++++|=.+|++|   ++..+.+++|+ .|+.++.+.+..+.+.+.+.... ..++.++..|+.         +.+..
T Consensus        41 ~~~~~~vLDlfaGsG---~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~-~~~~~ii~~d~~---------~~l~~  107 (183)
T d2fpoa1          41 VIVDAQCLDCFAGSG---ALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLK-AGNARVVNSNAM---------SFLAQ  107 (183)
T ss_dssp             HHTTCEEEETTCTTC---HHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT-CCSEEEECSCHH---------HHHSS
T ss_pred             ccchhhhhhhhcccc---ceeeeEEecCcceeEEEEEeechhhHHHHHHhhcc-ccceeeeeeccc---------ccccc
Confidence            367888885555555   56666778898 59999999988887777776542 345677776632         22333


Q ss_pred             CCCCeeEEEEcc
Q 025275          105 QGRPLNILINNA  116 (255)
Q Consensus       105 ~~g~id~lv~~a  116 (255)
                      .....|+++...
T Consensus       108 ~~~~fDlIf~DP  119 (183)
T d2fpoa1         108 KGTPHNIVFVDP  119 (183)
T ss_dssp             CCCCEEEEEECC
T ss_pred             cccccCEEEEcC
Confidence            445789999764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.69  E-value=0.28  Score=38.16  Aligned_cols=39  Identities=26%  Similarity=0.238  Sum_probs=33.0

Q ss_pred             CCCCcEEEEecCCCchHHHH-----HHHHHHcCCeEEEEEeccc
Q 025275           26 DGTGLTAIVTGASSGIGTET-----ARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~i-----a~~L~~~G~~Vi~~~r~~~   64 (255)
                      .-.+++++|+.|=||+|+..     |..|+++|.+|.+++-+..
T Consensus        16 ~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          16 ARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             HTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            34577888888899999976     7899999999999998854

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=87.63  E-value=0.93  Score=34.95  Aligned_cols=80  Identities=14%  Similarity=0.154  Sum_probs=57.1

Q ss_pred             CCC-CCcEEEEecCCCc-hHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHH
Q 025275           25 IDG-TGLTAIVTGASSG-IGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEY  102 (255)
Q Consensus        25 ~~~-~~k~vlItG~s~g-iG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~  102 (255)
                      .++ .|.+||=.|+++| +...+|+.+.. +.+|+.++++++.++...+.+.......++.+...|+.+.      +.  
T Consensus        81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~------~~--  151 (250)
T d1yb2a1          81 CGLRPGMDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF------IS--  151 (250)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC------CC--
T ss_pred             cCCCCcCEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc------cc--
Confidence            344 4789999998877 34555555433 4589999999988888888887765556899999998762      11  


Q ss_pred             hcCCCCeeEEEEcc
Q 025275          103 NSQGRPLNILINNA  116 (255)
Q Consensus       103 ~~~~g~id~lv~~a  116 (255)
                         ...+|.++.+.
T Consensus       152 ---~~~fD~V~ld~  162 (250)
T d1yb2a1         152 ---DQMYDAVIADI  162 (250)
T ss_dssp             ---SCCEEEEEECC
T ss_pred             ---cceeeeeeecC
Confidence               23689998653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=87.62  E-value=0.18  Score=33.63  Aligned_cols=40  Identities=18%  Similarity=0.067  Sum_probs=32.6

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      ..+++||+|+|.|++ .=|..+|.+|++.+.++++..|..+
T Consensus        27 ~~~f~gK~VlVVG~g-~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          27 PELFVGESVLVVGGA-SSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             GGGGTTCCEEEECSS-HHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             hhhcCCCeEEEECCC-CCHHHHHHHHHHhcCEEEEEEecCc
Confidence            345799999999987 6688999999998888777777654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=87.58  E-value=1.1  Score=34.72  Aligned_cols=78  Identities=13%  Similarity=0.098  Sum_probs=54.5

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHc-CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALR-GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .+.++|=.|++.|   .++..|+++ |++|+.++-++.-++...+......-..++.++.+|..+..          -..
T Consensus        67 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~----------~~~  133 (282)
T d2o57a1          67 RQAKGLDLGAGYG---GAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP----------CED  133 (282)
T ss_dssp             TTCEEEEETCTTS---HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS----------SCT
T ss_pred             CCCEEEEeCCCCc---HHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccc----------ccc
Confidence            5789999998877   455666664 88999999887766666665555433457999999987631          112


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +.+|+|+.....
T Consensus       134 ~sfD~V~~~~~l  145 (282)
T d2o57a1         134 NSYDFIWSQDAF  145 (282)
T ss_dssp             TCEEEEEEESCG
T ss_pred             cccchhhccchh
Confidence            578998866543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.40  E-value=0.31  Score=33.26  Aligned_cols=34  Identities=26%  Similarity=0.227  Sum_probs=29.6

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      +.++|.|| |.||..+|..|.+.|.+|.++.|+..
T Consensus        26 ~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          26 KKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             SEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccc
Confidence            67777775 69999999999999999999988754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=87.38  E-value=0.34  Score=34.41  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=29.2

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC--eEEEEEecc
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV--HVIMAVRNM   63 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~--~Vi~~~r~~   63 (255)
                      .||+++|.||+ ..|..+|..|.+.+.  +|.++.+++
T Consensus         1 ~gkrivIvGgG-~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGG-TGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECcc-HHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            47999999875 779999999999985  688887664

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=87.11  E-value=0.45  Score=32.84  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=30.4

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      ..++++|.| +|.+|.++|..|++.|.+|.++.+...
T Consensus        34 ~~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEEC-CchHHHHHHHHHHhhCcceeeeeeccc
Confidence            357777775 579999999999999999999998644

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.80  E-value=4  Score=29.04  Aligned_cols=121  Identities=8%  Similarity=0.042  Sum_probs=62.3

Q ss_pred             EEEEecC-CCchHHHHHHHHHHcC----CeEEEEEeccchH-HHHHHHHHhh-C--CCCceEEEEeCCCCHHHHHHHHHH
Q 025275           31 TAIVTGA-SSGIGTETARVLALRG----VHVIMAVRNMAAG-KDVREAIVKE-I--PSAKVDAMELDVSSLASVRKFASE  101 (255)
Q Consensus        31 ~vlItG~-s~giG~~ia~~L~~~G----~~Vi~~~r~~~~~-~~~~~~~~~~-~--~~~~~~~~~~Dl~~~~si~~~~~~  101 (255)
                      ++.|.|| +.+.+..++.-+....    .++++.+.+++.. .+..+.+... .  .+..+..  ...+|.   .+.++ 
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~--~~~td~---~~al~-   76 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEI--HLTLDR---RRALD-   76 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEE--EEESCH---HHHHT-
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCcee--eecCCc---hhhcC-
Confidence            4667776 4566666666555432    3899999987542 2223322211 0  0112222  233443   22233 


Q ss_pred             HhcCCCCeeEEEEccCCCCCCC----------------C-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCe
Q 025275          102 YNSQGRPLNILINNAGIMASPF----------------M-LSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGR  164 (255)
Q Consensus       102 ~~~~~g~id~lv~~ag~~~~~~----------------~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~  164 (255)
                            .-|++|+.+|......                + ..+..+     ........+++.+.+.+.+.    .+.+.
T Consensus        77 ------gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~-----~~~~~n~~i~~~i~~~i~~~----~pda~  141 (169)
T d1s6ya1          77 ------GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGL-----FKGLRTIPVILDIIRDMEEL----CPDAW  141 (169)
T ss_dssp             ------TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHH-----HHHHHHHHHHHHHHHHHHHH----CTTCE
T ss_pred             ------CCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchh-----hhccccHHHHHHHHHHHhhc----CCCeE
Confidence                  5799999998653110                0 011111     11234455667777777764    34667


Q ss_pred             EEEecCCc
Q 025275          165 IVNVSSEA  172 (255)
Q Consensus       165 ii~vsS~~  172 (255)
                      ++++|...
T Consensus       142 ~i~vtNPv  149 (169)
T d1s6ya1         142 LINFTNPA  149 (169)
T ss_dssp             EEECSSSH
T ss_pred             EEEeCChH
Confidence            88877744

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=86.61  E-value=0.84  Score=34.83  Aligned_cols=79  Identities=13%  Similarity=0.047  Sum_probs=56.8

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCC-eEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      ++++||=.|++.|   ..+..+++.|. +|+.+|.+++.++.+.+.........++.+..+|.....         ....
T Consensus        24 ~~~~VLDlGCG~G---~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~---------~~~~   91 (252)
T d1ri5a_          24 RGDSVLDLGCGKG---GDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH---------MDLG   91 (252)
T ss_dssp             TTCEEEEETCTTT---TTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC---------CCCS
T ss_pred             CcCEEEEecccCc---HHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc---------cccc
Confidence            5789999999877   34567777776 799999999888888777766544557899999985431         0112


Q ss_pred             CCeeEEEEccCC
Q 025275          107 RPLNILINNAGI  118 (255)
Q Consensus       107 g~id~lv~~ag~  118 (255)
                      +.+|+|+.+-+.
T Consensus        92 ~~fD~V~~~~~l  103 (252)
T d1ri5a_          92 KEFDVISSQFSF  103 (252)
T ss_dssp             SCEEEEEEESCG
T ss_pred             ccceEEEEccee
Confidence            468988766544

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=86.56  E-value=0.68  Score=33.82  Aligned_cols=39  Identities=23%  Similarity=0.092  Sum_probs=32.7

Q ss_pred             CCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           25 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        25 ~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      ...+.|.++|.|| |--|.+.|..|+++|++|.+..+...
T Consensus        39 ~~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          39 PAVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccCc
Confidence            3456788999987 46799999999999999999998753

>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=1.2  Score=33.26  Aligned_cols=88  Identities=19%  Similarity=0.136  Sum_probs=57.0

Q ss_pred             CcEEEEecCCCchHHHHH----HHHHHcC-----CeEEEEEeccchHHHHHHHHHhhCC------------CCceEEEEe
Q 025275           29 GLTAIVTGASSGIGTETA----RVLALRG-----VHVIMAVRNMAAGKDVREAIVKEIP------------SAKVDAMEL   87 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia----~~L~~~G-----~~Vi~~~r~~~~~~~~~~~~~~~~~------------~~~~~~~~~   87 (255)
                      .-+.+|.||||.+.+--.    -+|...|     ..|+.++|+..+.++..+.+.....            -.++.++.+
T Consensus        20 ~~t~VIFGatGDLA~RKL~PALf~L~~~g~Lp~~~~Iig~aR~~~s~e~fr~~~~~~~~~~~~~~~~~~~f~~~~~Y~~~   99 (203)
T d1qkia1          20 THIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVAG   99 (203)
T ss_dssp             CEEEEEETTTSHHHHHTHHHHHHHHHHTTCSCSSEEEEEEBSSCCSCHHHHHHHSCCTTCCGGGHHHHHHHHTTEECCBC
T ss_pred             CcEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCcEEEEEECCCCCHHHHHHHHHHHHhhchhhHHHHHHHHHhhccccC
Confidence            457899999999875321    1334444     5699999987655555444432211            246788999


Q ss_pred             CCCCHHHHHHHHHHHhcCC--CCeeEEEEcc
Q 025275           88 DVSSLASVRKFASEYNSQG--RPLNILINNA  116 (255)
Q Consensus        88 Dl~~~~si~~~~~~~~~~~--g~id~lv~~a  116 (255)
                      |++++++...+-+.+.+..  ...+.+++.|
T Consensus       100 d~~~~~~~~~L~~~l~~~~~~~~~~rifYLA  130 (203)
T d1qkia1         100 QYDDAASYQRLNSHMNALHLGSQANRLFYLA  130 (203)
T ss_dssp             CTTCHHHHHHHHHHHHHTTTTTTSEEEEEEC
T ss_pred             cCCChhhHHHHHHHHHHHhcCCCcceEEEEe
Confidence            9999998888766555432  2346777777

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=86.52  E-value=0.051  Score=38.74  Aligned_cols=37  Identities=11%  Similarity=0.049  Sum_probs=26.5

Q ss_pred             CCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHH
Q 025275           37 ASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAI   73 (255)
Q Consensus        37 ~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~   73 (255)
                      |+|-+|+++++.|.+.+..+.+.+|+.++++++.++.
T Consensus         6 G~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~   42 (153)
T d2i76a2           6 GTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVY   42 (153)
T ss_dssp             SCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHT
T ss_pred             eCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcc
Confidence            5688999999988664444568899988887776664

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=86.50  E-value=0.25  Score=38.68  Aligned_cols=35  Identities=26%  Similarity=0.238  Sum_probs=29.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      +-|+|+|.||+ --|...|.+|+++|++|.++.++.
T Consensus        29 ~pkkV~IIGaG-~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAG-MAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCB-HHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCC-HHHHHHHHHHHHCCCCEEEEeCCC
Confidence            34688999875 669999999999999999998765

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.47  E-value=0.63  Score=36.18  Aligned_cols=74  Identities=15%  Similarity=0.089  Sum_probs=51.6

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcC-CeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRG-VHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .|.++|-.||+.|   .++..++++| ++|+.++.+++..+.+.+.+....-.+++.++..|..+..           .-
T Consensus       107 ~g~~VlD~~aG~G---~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-----------~~  172 (260)
T d2frna1         107 PDELVVDMFAGIG---HLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-----------GE  172 (260)
T ss_dssp             TTCEEEETTCTTT---TTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-----------CC
T ss_pred             CccEEEECcceEc---HHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-----------cC
Confidence            5888988777755   2333344556 5899999999888887777776533567999999987521           12


Q ss_pred             CCeeEEEEc
Q 025275          107 RPLNILINN  115 (255)
Q Consensus       107 g~id~lv~~  115 (255)
                      +..|.++.+
T Consensus       173 ~~~D~Ii~~  181 (260)
T d2frna1         173 NIADRILMG  181 (260)
T ss_dssp             SCEEEEEEC
T ss_pred             CCCCEEEEC
Confidence            468988864

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=86.46  E-value=1.2  Score=33.28  Aligned_cols=76  Identities=13%  Similarity=0.019  Sum_probs=54.9

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      |.+||=.|++.|   .++..|++++.+|+.++.+.+-++...+...... -.++.++..|..+..     +.     .+.
T Consensus        17 ~~rILDiGcGtG---~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~-~~~~~~~~~d~~~~~-----~~-----~~~   82 (234)
T d1xxla_          17 EHRVLDIGAGAG---HTALAFSPYVQECIGVDATKEMVEVASSFAQEKG-VENVRFQQGTAESLP-----FP-----DDS   82 (234)
T ss_dssp             TCEEEEESCTTS---HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHT-CCSEEEEECBTTBCC-----SC-----TTC
T ss_pred             CCEEEEeCCcCc---HHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccc-ccccccccccccccc-----cc-----ccc
Confidence            678999999998   5667788899999999999876666666665542 246889998887532     11     247


Q ss_pred             eeEEEEccCC
Q 025275          109 LNILINNAGI  118 (255)
Q Consensus       109 id~lv~~ag~  118 (255)
                      +|+++.+-.+
T Consensus        83 fD~v~~~~~l   92 (234)
T d1xxla_          83 FDIITCRYAA   92 (234)
T ss_dssp             EEEEEEESCG
T ss_pred             cceeeeecee
Confidence            8977765443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=86.15  E-value=0.27  Score=37.69  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=27.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      .|+|.|| |--|...|.+|+++|++|.++.++.
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4788887 6789999999999999999998764

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=86.09  E-value=4.4  Score=28.86  Aligned_cols=124  Identities=11%  Similarity=0.074  Sum_probs=64.3

Q ss_pred             cEEEEecCCCchHH--HHHHHHHHc----CCeEEEEEeccchHHHHHHHHHh---hCCCCceEEEEeCCCCHHHHHHHHH
Q 025275           30 LTAIVTGASSGIGT--ETARVLALR----GVHVIMAVRNMAAGKDVREAIVK---EIPSAKVDAMELDVSSLASVRKFAS  100 (255)
Q Consensus        30 k~vlItG~s~giG~--~ia~~L~~~----G~~Vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~si~~~~~  100 (255)
                      .++.|.|| |.+|.  ++...|+..    +.++++.|.++++++....-+..   .. +....+..  -+|   .++.+.
T Consensus         3 mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~-~~~~~i~~--~td---~~eaL~   75 (171)
T d1obba1           3 VKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEV-GADLKFEK--TMN---LDDVII   75 (171)
T ss_dssp             CEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHT-TCCCEEEE--ESC---HHHHHT
T ss_pred             cEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhc-CCCeEEEE--eCC---hhhccc
Confidence            45778886 55554  444445543    35899999998876543333332   21 22222222  123   233333


Q ss_pred             HHhcCCCCeeEEEEccCCCCCCCCCChHHHHHHHH-----------HH---------HHHHHHHHHHHHHHHHHhhccCC
Q 025275          101 EYNSQGRPLNILINNAGIMASPFMLSKDNIELQFA-----------TN---------HLGHFLLTHLLLDTMKKTAQKSS  160 (255)
Q Consensus       101 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~-----------~n---------~~~~~~~~~~~~~~~~~~~~~~~  160 (255)
                             ..|++|+.++......  ......-.++           .+         .....-+++.+.+.+.+.    .
T Consensus        76 -------dad~Vv~~~~~g~~~~--~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~----~  142 (171)
T d1obba1          76 -------DADFVINTAMVGGHTY--LEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKL----S  142 (171)
T ss_dssp             -------TCSEEEECCCTTHHHH--HHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHH----C
T ss_pred             -------CCCeEeeecccccccc--eeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHH----C
Confidence                   5799999987532100  0000000000           00         123555677777777764    3


Q ss_pred             CCCeEEEecCCcc
Q 025275          161 REGRIVNVSSEAH  173 (255)
Q Consensus       161 ~~g~ii~vsS~~~  173 (255)
                      ..+.+|++|....
T Consensus       143 p~a~~i~~TNPvd  155 (171)
T d1obba1         143 PKAWYLQAANPIF  155 (171)
T ss_dssp             TTCEEEECSSCHH
T ss_pred             cCeEEEEECChHH
Confidence            4678888887553

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.75  E-value=0.38  Score=36.45  Aligned_cols=37  Identities=27%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      -+.|+++|.||+ --|...|.+|+++|++|.+..++.+
T Consensus        47 ~~~k~VvIIGaG-pAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAG-PSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEccc-HHHHHHHHHHHHhccceeeEeeccc
Confidence            467889999875 5699999999999999999987643

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.74  E-value=0.62  Score=32.86  Aligned_cols=34  Identities=6%  Similarity=0.032  Sum_probs=26.1

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcC----CeEEEEEecc
Q 025275           30 LTAIVTGASSGIGTETARVLALRG----VHVIMAVRNM   63 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G----~~Vi~~~r~~   63 (255)
                      |.+-|.||||-+|+.+.+.|+++.    .++++..++.
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~   39 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ   39 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccc
Confidence            467888999999999999887753    3566665554

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=85.69  E-value=0.58  Score=35.13  Aligned_cols=71  Identities=7%  Similarity=-0.025  Sum_probs=49.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      .+++.||=.|++.|   .+++.|+++|.+|+.++.+++.++...+.    . ..++.++..|+.+..           -.
T Consensus        19 ~~~~~VLDiGcG~G---~~~~~l~~~g~~v~giD~s~~~i~~a~~~----~-~~~~~~~~~~~~~~~-----------~~   79 (225)
T d2p7ia1          19 FRPGNLLELGSFKG---DFTSRLQEHFNDITCVEASEEAISHAQGR----L-KDGITYIHSRFEDAQ-----------LP   79 (225)
T ss_dssp             CCSSCEEEESCTTS---HHHHHHTTTCSCEEEEESCHHHHHHHHHH----S-CSCEEEEESCGGGCC-----------CS
T ss_pred             CCCCcEEEEeCCCc---HHHHHHHHcCCeEEEEeCcHHHhhhhhcc----c-ccccccccccccccc-----------cc
Confidence            46778999999988   66788999999999999887655444332    2 335788887766431           12


Q ss_pred             CCeeEEEEcc
Q 025275          107 RPLNILINNA  116 (255)
Q Consensus       107 g~id~lv~~a  116 (255)
                      +.+|+++...
T Consensus        80 ~~fD~I~~~~   89 (225)
T d2p7ia1          80 RRYDNIVLTH   89 (225)
T ss_dssp             SCEEEEEEES
T ss_pred             cccccccccc
Confidence            4689887543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=85.48  E-value=0.5  Score=32.30  Aligned_cols=35  Identities=17%  Similarity=0.120  Sum_probs=29.8

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      -+.++|.|| |.||..+|..|.+.|.+|.++.+...
T Consensus        26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            467788875 69999999999999999999988653

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=85.32  E-value=3  Score=27.68  Aligned_cols=81  Identities=19%  Similarity=0.197  Sum_probs=54.8

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      +|++||.--..-+-..+...|-+.|++|..+..    .++..+.+++..  ..+.++...+-+.+.++ ++.++++....
T Consensus         2 ~krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~----~~~al~~l~~~~--~dlillD~~mp~~~G~~-~~~~~r~~~~~   74 (121)
T d1mvoa_           2 NKKILVVDDEESIVTLLQYNLERSGYDVITASD----GEEALKKAETEK--PDLIVLDVMLPKLDGIE-VCKQLRQQKLM   74 (121)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESS----HHHHHHHHHHHC--CSEEEEESSCSSSCHHH-HHHHHHHTTCC
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECC----HHHHHHHHhccc--ccEEEecccccCCCCch-hhhhhhccCCC
Confidence            378999999999999999999999999876643    344455555553  35666666666655444 45666665555


Q ss_pred             eeEEEEcc
Q 025275          109 LNILINNA  116 (255)
Q Consensus       109 id~lv~~a  116 (255)
                      +.+++..+
T Consensus        75 ~~ii~lt~   82 (121)
T d1mvoa_          75 FPILMLTA   82 (121)
T ss_dssp             CCEEEEEC
T ss_pred             CEEEEEEe
Confidence            55555444

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.08  E-value=2.1  Score=31.03  Aligned_cols=77  Identities=22%  Similarity=0.125  Sum_probs=55.6

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhC-CCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEI-PSAKVDAMELDVSSLASVRKFASEYNSQ  105 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~si~~~~~~~~~~  105 (255)
                      ..+++||=.|++.|   .++..|++.+.+|++++.++...+...+.+.... .+.++.++..|+.+.  +.         
T Consensus        51 ~~~~~VLDiGcG~G---~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~--~~---------  116 (194)
T d1dusa_          51 DKDDDILDLGCGYG---VIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN--VK---------  116 (194)
T ss_dssp             CTTCEEEEETCTTS---HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT--CT---------
T ss_pred             CCCCeEEEEeecCC---hhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh--hc---------
Confidence            45789998888887   5566788888899999999877776666665432 234688999998652  11         


Q ss_pred             CCCeeEEEEccC
Q 025275          106 GRPLNILINNAG  117 (255)
Q Consensus       106 ~g~id~lv~~ag  117 (255)
                      .+.+|+++.+..
T Consensus       117 ~~~fD~Ii~~~p  128 (194)
T d1dusa_         117 DRKYNKIITNPP  128 (194)
T ss_dssp             TSCEEEEEECCC
T ss_pred             cCCceEEEEccc
Confidence            136999998753

>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: "Helical backbone" metal receptor
family: Nitrogenase iron-molybdenum protein
domain: Nitrogenase iron-molybdenum protein, alpha chain
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.94  E-value=1.2  Score=37.76  Aligned_cols=79  Identities=11%  Similarity=0.032  Sum_probs=53.3

Q ss_pred             CCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 025275           27 GTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQG  106 (255)
Q Consensus        27 ~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~  106 (255)
                      +.||+++|.|+. ....++++.|.+.|.+|+.++-.... .+..+......+. ....  .|=.|..++...+++.    
T Consensus       343 l~Gkrv~i~~~~-~~~~~l~~~l~elGmevv~~~~~~~~-~~d~~~~~~~~~~-~~~i--~~d~~~~el~~~i~~~----  413 (477)
T d1m1na_         343 LEGKRVMLYIGG-LRPRHVIGAYEDLGMEVVGTGYEFAH-NDDYDRTMKEMGD-STLL--YDDVTGYEFEEFVKRI----  413 (477)
T ss_dssp             HTTCEEEECBSS-SHHHHTHHHHHTTTCEEEEEEESSCC-HHHHHTTTTTSCT-TCEE--EESCBHHHHHHHHHHH----
T ss_pred             hcCCcEEEecCc-hhHHHHHHHHHHCCCEEEEEeecCCC-hHHHHHHHHhcCC-CcEE--ecCCCHHHHHHHHHhc----
Confidence            689999998765 57789999999999998888765443 2333333333322 2222  2334566788888877    


Q ss_pred             CCeeEEEEc
Q 025275          107 RPLNILINN  115 (255)
Q Consensus       107 g~id~lv~~  115 (255)
                       ++|+++-+
T Consensus       414 -~pDL~ig~  421 (477)
T d1m1na_         414 -KPDLIGSG  421 (477)
T ss_dssp             -CCSEEEEC
T ss_pred             -CCCEEEEC
Confidence             69999844

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.81  E-value=0.34  Score=37.67  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=29.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      .|+|.||+ -.|+.+|..|+++|.+|.++.+..+
T Consensus         4 ~V~IvGaG-p~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAG-PSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCS-HHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcC-HHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            48888887 8899999999999999999998753

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=84.80  E-value=1.8  Score=31.62  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=33.0

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHH
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVR   70 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~   70 (255)
                      -.++|.|| |-.|++=++-....|++|.+.|.+.+.++++.
T Consensus        30 a~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~   69 (183)
T d1l7da1          30 ARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVE   69 (183)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred             cEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence            46888876 57899999999999999999999988755443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.78  E-value=1.6  Score=28.16  Aligned_cols=69  Identities=12%  Similarity=0.135  Sum_probs=40.6

Q ss_pred             cEEEEecCCCchH-HHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 025275           30 LTAIVTGASSGIG-TETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRP  108 (255)
Q Consensus        30 k~vlItG~s~giG-~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~  108 (255)
                      |.+.+.|-+ |+| .++|+.|.++|+.|...|+.....   .+.+.+.  +.  .+.. .-. ++.+           ..
T Consensus         9 ~~ihfiGig-G~GMs~LA~~L~~~G~~VsGSD~~~~~~---~~~L~~~--Gi--~v~~-g~~-~~~i-----------~~   67 (96)
T d1p3da1           9 QQIHFIGIG-GAGMSGIAEILLNEGYQISGSDIADGVV---TQRLAQA--GA--KIYI-GHA-EEHI-----------EG   67 (96)
T ss_dssp             CEEEEETTT-STTHHHHHHHHHHHTCEEEEEESCCSHH---HHHHHHT--TC--EEEE-SCC-GGGG-----------TT
T ss_pred             CEEEEEEEC-HHHHHHHHHHHHhCCCEEEEEeCCCChh---hhHHHHC--CC--eEEE-CCc-cccC-----------CC
Confidence            445555433 223 578999999999999999875433   3344333  32  2222 221 1111           14


Q ss_pred             eeEEEEccCCC
Q 025275          109 LNILINNAGIM  119 (255)
Q Consensus       109 id~lv~~ag~~  119 (255)
                      .|.+|...++.
T Consensus        68 ~d~vV~S~AI~   78 (96)
T d1p3da1          68 ASVVVVSSAIK   78 (96)
T ss_dssp             CSEEEECTTSC
T ss_pred             CCEEEECCCcC
Confidence            79999988864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.64  E-value=1.6  Score=32.81  Aligned_cols=82  Identities=15%  Similarity=0.129  Sum_probs=56.9

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHH-cC----CeEEEEEeccchHHHHHHHHHhh----CCCCceEEEEeCCCCHHHHHHH
Q 025275           28 TGLTAIVTGASSGIGTETARVLAL-RG----VHVIMAVRNMAAGKDVREAIVKE----IPSAKVDAMELDVSSLASVRKF   98 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~-~G----~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~si~~~   98 (255)
                      .+.+||..|+++|--.++..+++. .|    .+|+.+.++++-.+...+.+...    ....++.++..|..+.      
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~------  153 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG------  153 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC------
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccc------
Confidence            578999999999988888888875 33    47999998877555554444321    1124688888887541      


Q ss_pred             HHHHhcCCCCeeEEEEccCCC
Q 025275           99 ASEYNSQGRPLNILINNAGIM  119 (255)
Q Consensus        99 ~~~~~~~~g~id~lv~~ag~~  119 (255)
                          ....+..|.++.+++..
T Consensus       154 ----~~~~~~fD~Iiv~~a~~  170 (223)
T d1r18a_         154 ----YPPNAPYNAIHVGAAAP  170 (223)
T ss_dssp             ----CGGGCSEEEEEECSCBS
T ss_pred             ----cccccceeeEEEEeech
Confidence                12235789999888763

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=84.61  E-value=0.41  Score=37.49  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=26.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCC-eEEEEEecc
Q 025275           31 TAIVTGASSGIGTETARVLALRGV-HVIMAVRNM   63 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~-~Vi~~~r~~   63 (255)
                      .|+|.|| |-+|.++|.+|+++|. +|.+++++.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            3777776 5999999999999996 699998863

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=84.42  E-value=2.5  Score=29.07  Aligned_cols=34  Identities=26%  Similarity=0.193  Sum_probs=29.4

Q ss_pred             CcEEEEecCC---CchHHHHHHHHHHcCCeEEEEEec
Q 025275           29 GLTAIVTGAS---SGIGTETARVLALRGVHVIMAVRN   62 (255)
Q Consensus        29 ~k~vlItG~s---~giG~~ia~~L~~~G~~Vi~~~r~   62 (255)
                      -|.+.|.|+|   +-.|..+++.|.+.|++++...-+
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~   49 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPR   49 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGG
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEec
Confidence            4789999999   569999999999999998887654

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.28  E-value=0.45  Score=35.60  Aligned_cols=34  Identities=24%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             cEEEEecCCCchHHH-----HHHHHHHcCCeEEEEEecc
Q 025275           30 LTAIVTGASSGIGTE-----TARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        30 k~vlItG~s~giG~~-----ia~~L~~~G~~Vi~~~r~~   63 (255)
                      |++.|+++-||+|+.     +|..|+++|.+|.++|-+.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            789999999999974     6778999999999998764

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.06  E-value=0.45  Score=36.71  Aligned_cols=30  Identities=30%  Similarity=0.436  Sum_probs=26.0

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEec
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRN   62 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~   62 (255)
                      |+|.|| |-.|..+|.+|+++|.+|+++.+.
T Consensus         6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence            666654 688999999999999999999875

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.00  E-value=0.84  Score=34.08  Aligned_cols=80  Identities=10%  Similarity=0.082  Sum_probs=52.7

Q ss_pred             CCCC-CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHh
Q 025275           25 IDGT-GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYN  103 (255)
Q Consensus        25 ~~~~-~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~  103 (255)
                      +.++ |.+||=.|++.|.-...+..+...| .|+.++.+++.++.+.+..+..   .++.++..|..+...-..      
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g-~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~------  121 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSG------  121 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTS-EEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTT------
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCC-eEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCcccccc------
Confidence            4443 7899999999885433333333333 8999999988777776665543   478899889887543221      


Q ss_pred             cCCCCeeEEEEc
Q 025275          104 SQGRPLNILINN  115 (255)
Q Consensus       104 ~~~g~id~lv~~  115 (255)
                       .+..+|++++.
T Consensus       122 -~~~~vd~v~~~  132 (209)
T d1nt2a_         122 -IVEKVDLIYQD  132 (209)
T ss_dssp             -TCCCEEEEEEC
T ss_pred             -ccceEEEEEec
Confidence             12357777664

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.55  E-value=0.76  Score=30.87  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=28.5

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      |+++|.|| |.+|.++|..|++.|.+|.++.|..
T Consensus        23 ~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          23 KKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence            56777765 6999999999999999999999864

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=83.50  E-value=3  Score=32.68  Aligned_cols=56  Identities=13%  Similarity=0.000  Sum_probs=34.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCC
Q 025275           31 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDV   89 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl   89 (255)
                      ..+|++.+|.-|.++|...+..|..+++.-..... ....+.++..  +.++..+.-+.
T Consensus        70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~k~~~l~~~--Ga~vi~~~~~~  125 (318)
T d1v71a1          70 AGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAP-EAKVAATKGY--GGQVIMYDRYK  125 (318)
T ss_dssp             HCEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCC-HHHHHHHHHT--TCEEEEECTTT
T ss_pred             ceeeeeccchhhHHHHHhhcccccceeeccccccc-HHHHHHHHHc--CCcEEeccCCc
Confidence            45888999999999999998888875444433222 2334444444  44555444333

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=83.29  E-value=4.5  Score=26.86  Aligned_cols=82  Identities=11%  Similarity=0.127  Sum_probs=52.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      ++.++||.--...+...+.+.|.+.|++|..+. +   ..+..+.+.+.  ...+.+....+-+.+.+ .+++++++...
T Consensus         2 ~~~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~-~---~~~al~~~~~~--~~dlvi~D~~mp~~~G~-e~~~~lr~~~~   74 (123)
T d1dbwa_           2 QDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQ-S---AEAFLAFAPDV--RNGVLVTDLRMPDMSGV-ELLRNLGDLKI   74 (123)
T ss_dssp             CCCEEEEEESSHHHHHHHHHHHHHTTCEEEEES-C---HHHHHHHGGGC--CSEEEEEECCSTTSCHH-HHHHHHHHTTC
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEC-C---HHHHHHHHhhc--CCcEEEEeccCccccch-HHHHHHHhcCC
Confidence            456899999999999999999999999986543 2   34444444443  22344444444444433 35666666655


Q ss_pred             CeeEEEEcc
Q 025275          108 PLNILINNA  116 (255)
Q Consensus       108 ~id~lv~~a  116 (255)
                      .+-+++..+
T Consensus        75 ~~~iI~lt~   83 (123)
T d1dbwa_          75 NIPSIVITG   83 (123)
T ss_dssp             CCCEEEEEC
T ss_pred             CCeEEEEEe
Confidence            566666554

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.02  E-value=5.9  Score=27.82  Aligned_cols=75  Identities=13%  Similarity=-0.020  Sum_probs=41.9

Q ss_pred             EEEEecCCCchHHHHHHH-HHHc-----CCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           31 TAIVTGASSGIGTETARV-LALR-----GVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~-L~~~-----G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ++.|.||++ +|..++-. |++.     +.++++.|.+++++....+........ ... +..- ++.   .+.++    
T Consensus         2 KIaiIGaGs-~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~-~~~-~~~t-~~~---~~~l~----   70 (162)
T d1up7a1           2 RIAVIGGGS-SYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKD-RFK-VLIS-DTF---EGAVV----   70 (162)
T ss_dssp             EEEEETTTC-TTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTT-SSE-EEEC-SSH---HHHHT----
T ss_pred             EEEEECCCH-HHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhcc-Cce-EEEe-cCc---ccccC----
Confidence            477888865 56555533 3221     347999999988776554444332111 112 2221 221   22222    


Q ss_pred             CCCCeeEEEEccCCC
Q 025275          105 QGRPLNILINNAGIM  119 (255)
Q Consensus       105 ~~g~id~lv~~ag~~  119 (255)
                         ..|++|..+|..
T Consensus        71 ---~aDvVVita~~~   82 (162)
T d1up7a1          71 ---DAKYVIFQFRPG   82 (162)
T ss_dssp             ---TCSEEEECCCTT
T ss_pred             ---CCCEEEEecccC
Confidence               579999999864

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.98  E-value=0.58  Score=34.36  Aligned_cols=34  Identities=18%  Similarity=0.080  Sum_probs=26.8

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHH
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGK   67 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~   67 (255)
                      +.|.| .|.+|+.+|..|+ +|++|+..|-+++..+
T Consensus         3 I~ViG-lG~vGl~~a~~~a-~g~~V~g~Din~~~v~   36 (196)
T d1dlja2           3 IAVAG-SGYVGLSLGVLLS-LQNEVTIVDILPSKVD   36 (196)
T ss_dssp             EEEEC-CSHHHHHHHHHHT-TTSEEEEECSCHHHHH
T ss_pred             EEEEC-CChhHHHHHHHHH-CCCcEEEEECCHHHHH
Confidence            55555 8999999998665 6999999998876543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.89  E-value=0.51  Score=31.96  Aligned_cols=35  Identities=37%  Similarity=0.358  Sum_probs=29.1

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      .+.++|.|| |.+|..+|..|++.|.+|.++.|++.
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccceEEEEecccc
Confidence            356777664 79999999999999999999988753

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=82.73  E-value=0.91  Score=32.10  Aligned_cols=26  Identities=27%  Similarity=0.511  Sum_probs=22.9

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGV   54 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~   54 (255)
                      |-+|.|.||||.+|.++.+-|.++.+
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~f   26 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTL   26 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCC
Confidence            45789999999999999999988864

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=82.55  E-value=2.7  Score=31.55  Aligned_cols=76  Identities=13%  Similarity=0.066  Sum_probs=52.4

Q ss_pred             CcEEEEecCCCchHHHHHHHHHH-cCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 025275           29 GLTAIVTGASSGIGTETARVLAL-RGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGR  107 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g  107 (255)
                      |++||=.|++.|   .++..|++ .|+.|+.++-++.-++...+.......+.++.++..|+.+.      +     ..+
T Consensus        34 g~~VLDiGCG~G---~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~------~-----~~~   99 (245)
T d1nkva_          34 GTRILDLGSGSG---EMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY------V-----ANE   99 (245)
T ss_dssp             TCEEEEETCTTC---HHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC------C-----CSS
T ss_pred             CCEEEEEcCCCC---HHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc------c-----ccC
Confidence            788998888877   45566666 47899999988766665555555543356799999998762      0     124


Q ss_pred             CeeEEEEccCC
Q 025275          108 PLNILINNAGI  118 (255)
Q Consensus       108 ~id~lv~~ag~  118 (255)
                      ++|.++..-..
T Consensus       100 ~fD~v~~~~~~  110 (245)
T d1nkva_         100 KCDVAACVGAT  110 (245)
T ss_dssp             CEEEEEEESCG
T ss_pred             ceeEEEEEehh
Confidence            68877766544

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=82.11  E-value=0.77  Score=34.08  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=32.7

Q ss_pred             CCCCCCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEecc
Q 025275           24 GIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM   63 (255)
Q Consensus        24 ~~~~~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~   63 (255)
                      ..+++||+|+|.|++. -|..||.++++.+..++.+.|..
T Consensus        27 ~~~~~gK~V~VvG~G~-Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          27 PVDFSGQRVGVIGTGS-SGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCCBTCEEEEECCSH-HHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCCEEEEECCCc-cHHHHHHHHHhhhcccccccccc
Confidence            3568999999998764 48999999999999988887764

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.81  E-value=1.1  Score=34.40  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=28.5

Q ss_pred             CCCCcEEEEecCCCchHHHHHHHHHH-cCCeEEEEE
Q 025275           26 DGTGLTAIVTGASSGIGTETARVLAL-RGVHVIMAV   60 (255)
Q Consensus        26 ~~~~k~vlItG~s~giG~~ia~~L~~-~G~~Vi~~~   60 (255)
                      +++||+++|-|- |.+|.++|+.|++ .|+.|+.++
T Consensus        29 ~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vs   63 (239)
T d1gtma1          29 TLKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVS   63 (239)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHhcCcceeecc
Confidence            589999999987 6799999999986 588876664

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.80  E-value=2.8  Score=27.95  Aligned_cols=79  Identities=18%  Similarity=0.181  Sum_probs=50.2

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCC--CHHHHHHHHHHHhcCC
Q 025275           29 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVS--SLASVRKFASEYNSQG  106 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--~~~si~~~~~~~~~~~  106 (255)
                      ..++||.--...+...+.+.|.+.|++|..+...    .+..+.+++.    ....+-+|+.  +.+.+ .+++++++.+
T Consensus         3 k~~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~----~~a~~~l~~~----~~dlii~D~~mp~~~G~-el~~~l~~~~   73 (123)
T d1krwa_           3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENG----NEVLAALASK----TPDVLLSDIRMPGMDGL-ALLKQIKQRH   73 (123)
T ss_dssp             CCEEEEESSSHHHHHHHHHHHHHTTCEEEEESSS----HHHHHHHTTC----CCSEEEECCSSSSSTTH-HHHHHHHHHS
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCH----HHHHHHHHhC----CCCEEEehhhcCCchHH-HHHHHHHHhC
Confidence            4579999999999999999999999999765433    3344455443    2334444544  33323 2555665555


Q ss_pred             CCeeEEEEcc
Q 025275          107 RPLNILINNA  116 (255)
Q Consensus       107 g~id~lv~~a  116 (255)
                      ..+-+++..+
T Consensus        74 ~~~piI~~t~   83 (123)
T d1krwa_          74 PMLPVIIMTA   83 (123)
T ss_dssp             SSCCEEESCC
T ss_pred             CCCeEEEEec
Confidence            5555555444

>d2fr1a2 c.2.1.2 (A:1448-1656) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=81.52  E-value=7.6  Score=28.07  Aligned_cols=145  Identities=10%  Similarity=-0.074  Sum_probs=77.6

Q ss_pred             CCCcEEEEecCC--CchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhc
Q 025275           27 GTGLTAIVTGAS--SGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNS  104 (255)
Q Consensus        27 ~~~k~vlItG~s--~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~  104 (255)
                      ..+.++++....  ...+.+++..|.+.|..++.+.-..+                         .+.+   .+... ..
T Consensus        23 ~~g~~lv~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~-------------------------~~~~---~l~~~-~~   73 (209)
T d2fr1a2          23 LDGTWLVAKYAGTADETSTAAREALESAGARVRELVVDAR-------------------------CGRD---ELAER-LR   73 (209)
T ss_dssp             CCSEEEEEECTTSSHHHHHHHHHHHHTTSCEEEEEECCTT-------------------------CCHH---HHHHH-HT
T ss_pred             CCCcEEEEeCCCCchHHHHHHHHHHHhCCCeEEEecCCCc-------------------------cCHH---HHHHH-hh
Confidence            345555555333  34677788888888888766543321                         1222   22222 23


Q ss_pred             CCCCeeEEEEccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEecCCccccccccCccCC
Q 025275          105 QGRPLNILINNAGIMASPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFD  184 (255)
Q Consensus       105 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~vsS~~~~~~~~~~~~~~  184 (255)
                      ..+.++.+|+..+...........     ....+...+.++|++..   .     +...++.+++..+....        
T Consensus        74 ~~~~~~~vv~l~~~~~~~~~~~~~-----~~~~~~~~l~l~qal~~---~-----~~~~~l~~vT~~a~~~~--------  132 (209)
T d2fr1a2          74 SVGEVAGVLSLLAVDEAEPEEAPL-----ALASLADTLSLVQAMVS---A-----ELGCPLWTVTESAVATG--------  132 (209)
T ss_dssp             TSCCCSEEEECTTTTCCCCSSCGG-----GCHHHHHHHHHHHHHHH---T-----TCCCCEEEEEESCSCSS--------
T ss_pred             ccCCCCeEEEeCCCCCCCCcchhH-----HHHHHHHHHHHHHHHHh---C-----CCCCcEEEEEcCCcccC--------
Confidence            346788899887654322221111     11224455556665532   1     23356666665332110        


Q ss_pred             CCCcccCCCCccchHHhHHHHHHHHHHHHHHHhhCCCcEEEEEeeCC
Q 025275          185 KINDESAYNSFGAYGQSKLANILHAKELAKHLKEDGVNITANSLHPG  231 (255)
Q Consensus       185 ~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~~~~~~~~~i~vn~v~PG  231 (255)
                              ..-..-....+++-+|+|+++.|+....  +++..+.+.
T Consensus       133 --------~~d~~~~p~~A~l~Gl~r~~~~E~P~l~--~~~vDl~~~  169 (209)
T d2fr1a2         133 --------PFERVRNAAHGALWGVGRVIALENPAVW--GGLVDVPAG  169 (209)
T ss_dssp             --------TTSCCSCGGGHHHHHHHHHHHHHCGGGE--EEEEEECTT
T ss_pred             --------CCcccCCHhHHhHHHHHHHHHHhCCCce--EEEEECCCC
Confidence                    0111223467888999999999998754  666666444

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.21  E-value=2.3  Score=30.83  Aligned_cols=73  Identities=14%  Similarity=0.160  Sum_probs=48.3

Q ss_pred             cCCCchHHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHhcCCCCeeEEEEc
Q 025275           36 GASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINN  115 (255)
Q Consensus        36 G~s~giG~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~si~~~~~~~~~~~g~id~lv~~  115 (255)
                      -||=|-|-+ ++++++++.+|+.+||+++.+....+ +   . ..++.++..+.++   +...+....  .+.+|.++..
T Consensus        24 D~T~G~GGh-s~~iL~~~~~viaiD~D~~ai~~a~~-~---~-~~~~~~~~~~f~~---~~~~l~~~~--~~~vdgIl~D   92 (182)
T d1wg8a2          24 DATLGGAGH-ARGILERGGRVIGLDQDPEAVARAKG-L---H-LPGLTVVQGNFRH---LKRHLAALG--VERVDGILAD   92 (182)
T ss_dssp             ETTCTTSHH-HHHHHHTTCEEEEEESCHHHHHHHHH-T---C-CTTEEEEESCGGG---HHHHHHHTT--CSCEEEEEEE
T ss_pred             EeCCCCcHH-HHHHhcccCcEEEEhhhhhHHHHHhh-c---c-ccceeEeehHHHH---HHHHHHHcC--CCccCEEEEE
Confidence            344444434 45666778899999999876544332 1   2 4578999988887   444444432  3579999998


Q ss_pred             cCCC
Q 025275          116 AGIM  119 (255)
Q Consensus       116 ag~~  119 (255)
                      -|+.
T Consensus        93 LGvS   96 (182)
T d1wg8a2          93 LGVS   96 (182)
T ss_dssp             CSCC
T ss_pred             ccCC
Confidence            8875

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=81.09  E-value=0.85  Score=32.48  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=25.1

Q ss_pred             CCcEEEEecCCCchHHHHHHHHHHcCCeEEEEEe
Q 025275           28 TGLTAIVTGASSGIGTETARVLALRGVHVIMAVR   61 (255)
Q Consensus        28 ~~k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r   61 (255)
                      +++.|+|.|| |.+|..+|..|.+.|.+|-++.+
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~   34 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLV   34 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEe
Confidence            4567777765 68999999999999987544433

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=80.98  E-value=0.73  Score=34.72  Aligned_cols=33  Identities=24%  Similarity=0.229  Sum_probs=28.1

Q ss_pred             EEEecCCCchHHHHHHHHHHcCCeEEEEEeccch
Q 025275           32 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAA   65 (255)
Q Consensus        32 vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~~   65 (255)
                      |+|.||+ --|...|.+|+++|.+|+++.++..-
T Consensus         5 ViIIGaG-~aGl~aA~~la~~G~~V~liEk~~~~   37 (251)
T d2i0za1           5 VIVIGGG-PSGLMAAIGAAEEGANVLLLDKGNKL   37 (251)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            6788775 68999999999999999999987643

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.61  E-value=0.89  Score=30.37  Aligned_cols=34  Identities=18%  Similarity=0.150  Sum_probs=26.2

Q ss_pred             CcEEEEecCCCchHHHHHHHHHHcC---CeEEEEEecc
Q 025275           29 GLTAIVTGASSGIGTETARVLALRG---VHVIMAVRNM   63 (255)
Q Consensus        29 ~k~vlItG~s~giG~~ia~~L~~~G---~~Vi~~~r~~   63 (255)
                      .+.++|.|| |.+|..+|..|.+.|   .+|.++.|..
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            367888887 899999997666554   5798888764

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=80.47  E-value=1.4  Score=32.73  Aligned_cols=64  Identities=16%  Similarity=0.129  Sum_probs=44.3

Q ss_pred             CCcEEEEecCCCch-HHHHHHHHHHcCCeEEEEEeccchHHHHHHHHHhhCCCCceEEEEeCCCC
Q 025275           28 TGLTAIVTGASSGI-GTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSS   91 (255)
Q Consensus        28 ~~k~vlItG~s~gi-G~~ia~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   91 (255)
                      .+.++|=.|++.|- ...+++++...|++|+.++.+++-++...+.+.+......+.+...|..+
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~  103 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH  103 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc
Confidence            46789999988773 34444444456889999999988777776666655445566777666654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=80.23  E-value=0.83  Score=30.41  Aligned_cols=34  Identities=21%  Similarity=0.179  Sum_probs=28.3

Q ss_pred             cEEEEecCCCchHHHHHHHHHHcCCeEEEEEeccc
Q 025275           30 LTAIVTGASSGIGTETARVLALRGVHVIMAVRNMA   64 (255)
Q Consensus        30 k~vlItG~s~giG~~ia~~L~~~G~~Vi~~~r~~~   64 (255)
                      +.++|.| +|.+|..+|..|++.|.+|.++.+...
T Consensus        22 ~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          22 QHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEEC-CCHHHHHHHHHHhhcccceEEEeeecc
Confidence            5666665 579999999999999999999988643

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.07  E-value=1.1  Score=31.27  Aligned_cols=33  Identities=18%  Similarity=0.272  Sum_probs=26.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHcC---CeEEEEEecc
Q 025275           31 TAIVTGASSGIGTETARVLALRG---VHVIMAVRNM   63 (255)
Q Consensus        31 ~vlItG~s~giG~~ia~~L~~~G---~~Vi~~~r~~   63 (255)
                      .|.|.||||.+|+.+.+-|.+++   .++..+..+.
T Consensus         4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~   39 (144)
T d2hjsa1           4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAE   39 (144)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecc
Confidence            58899999999999999998654   4666665443