Query 025279
Match_columns 255
No_of_seqs 127 out of 1398
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:14:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 6.4E-28 1.4E-32 216.0 19.7 214 24-238 122-340 (358)
2 PRK11453 O-acetylserine/cystei 99.9 1.1E-23 2.3E-28 185.1 19.2 188 24-229 98-290 (299)
3 PRK11689 aromatic amino acid e 99.9 1.1E-22 2.3E-27 178.5 16.3 188 23-228 102-289 (295)
4 PRK11272 putative DMT superfam 99.9 2.6E-22 5.6E-27 175.7 17.7 181 24-229 108-288 (292)
5 TIGR00950 2A78 Carboxylate/Ami 99.9 2E-22 4.4E-27 172.9 15.6 192 7-222 62-260 (260)
6 PRK10532 threonine and homoser 99.9 1E-21 2.2E-26 172.1 17.5 169 36-230 117-285 (293)
7 TIGR00817 tpt Tpt phosphate/ph 99.9 7.8E-22 1.7E-26 173.4 13.0 198 11-230 84-297 (302)
8 PRK15430 putative chlorampheni 99.9 5.9E-21 1.3E-25 167.5 13.9 194 4-227 85-286 (296)
9 PF06027 DUF914: Eukaryotic pr 99.9 1.8E-20 4E-25 165.3 16.7 196 24-234 117-313 (334)
10 TIGR03340 phn_DUF6 phosphonate 99.8 6.1E-20 1.3E-24 159.9 14.8 177 23-223 100-280 (281)
11 COG0697 RhaT Permeases of the 99.8 1.5E-17 3.2E-22 144.0 16.0 178 24-227 108-288 (292)
12 PTZ00343 triose or hexose phos 99.8 1.2E-17 2.5E-22 149.9 15.3 182 24-227 152-349 (350)
13 COG5006 rhtA Threonine/homoser 99.6 3.3E-15 7.3E-20 124.2 13.8 166 42-230 121-286 (292)
14 PF00892 EamA: EamA-like trans 99.6 1E-15 2.3E-20 116.2 9.5 125 97-225 1-125 (126)
15 TIGR00776 RhaT RhaT L-rhamnose 99.6 3.3E-15 7.1E-20 130.8 12.6 195 7-226 74-288 (290)
16 TIGR00688 rarD rarD protein. T 99.6 3.9E-15 8.6E-20 127.8 12.0 168 4-201 82-255 (256)
17 COG2510 Predicted membrane pro 99.6 1.5E-14 3.2E-19 108.4 12.6 135 89-226 5-139 (140)
18 KOG4510 Permease of the drug/m 99.6 2.2E-15 4.7E-20 126.2 6.4 189 27-228 138-327 (346)
19 KOG2765 Predicted membrane pro 99.6 2.8E-14 6E-19 124.6 12.7 188 31-231 204-395 (416)
20 COG2962 RarD Predicted permeas 99.5 6.6E-13 1.4E-17 113.0 15.6 197 3-228 83-285 (293)
21 PF08449 UAA: UAA transporter 99.4 4.4E-12 9.5E-17 111.7 16.6 196 24-231 102-302 (303)
22 KOG2766 Predicted membrane pro 99.4 8.3E-13 1.8E-17 110.1 6.7 198 12-229 98-302 (336)
23 PRK15430 putative chlorampheni 99.4 1.2E-11 2.6E-16 108.5 13.7 139 84-226 5-145 (296)
24 TIGR00688 rarD rarD protein. T 99.3 3.8E-11 8.2E-16 103.1 13.1 136 87-225 2-141 (256)
25 TIGR03340 phn_DUF6 phosphonate 99.3 9.3E-11 2E-15 102.1 14.9 133 89-226 3-135 (281)
26 PRK02971 4-amino-4-deoxy-L-ara 99.2 3.8E-10 8.2E-15 86.9 13.6 122 87-229 2-125 (129)
27 PF03151 TPT: Triose-phosphate 99.1 3.9E-09 8.5E-14 83.3 13.3 138 88-226 1-153 (153)
28 PLN00411 nodulin MtN21 family 99.1 5E-09 1.1E-13 94.3 15.1 140 87-228 13-158 (358)
29 PRK11272 putative DMT superfam 99.1 6.1E-09 1.3E-13 91.2 14.8 131 89-226 10-141 (292)
30 KOG2234 Predicted UDP-galactos 99.0 1.5E-08 3.3E-13 88.8 16.5 203 12-231 124-327 (345)
31 TIGR00950 2A78 Carboxylate/Ami 99.0 4.1E-09 8.9E-14 90.3 12.7 119 99-226 1-119 (260)
32 KOG1580 UDP-galactose transpor 99.0 8.7E-09 1.9E-13 85.4 13.5 187 24-225 123-312 (337)
33 PRK11453 O-acetylserine/cystei 99.0 7.9E-09 1.7E-13 90.8 14.1 125 90-226 7-132 (299)
34 PF13536 EmrE: Multidrug resis 99.0 2.4E-09 5.3E-14 80.6 9.3 108 121-229 2-109 (113)
35 PRK11689 aromatic amino acid e 99.0 1.1E-08 2.4E-13 89.8 13.5 131 87-227 4-138 (295)
36 PF04142 Nuc_sug_transp: Nucle 98.9 5.3E-08 1.2E-12 83.1 14.5 188 24-217 55-244 (244)
37 KOG1441 Glucose-6-phosphate/ph 98.9 2.3E-09 5.1E-14 94.0 5.7 186 25-233 122-314 (316)
38 PTZ00343 triose or hexose phos 98.9 1E-07 2.2E-12 85.7 16.0 125 100-226 62-186 (350)
39 TIGR00817 tpt Tpt phosphate/ph 98.9 8.1E-08 1.7E-12 84.4 14.7 121 101-225 16-136 (302)
40 PRK15051 4-amino-4-deoxy-L-ara 98.8 4.7E-08 1E-12 73.4 10.2 67 159-225 42-108 (111)
41 COG2962 RarD Predicted permeas 98.7 1.4E-07 3E-12 80.8 11.6 141 85-228 5-146 (293)
42 COG0697 RhaT Permeases of the 98.7 1.1E-06 2.3E-11 75.8 15.2 142 85-230 5-147 (292)
43 KOG1581 UDP-galactose transpor 98.6 5.8E-07 1.3E-11 77.3 12.5 193 24-230 121-317 (327)
44 KOG1443 Predicted integral mem 98.6 4.3E-06 9.3E-11 72.1 16.0 175 24-226 128-315 (349)
45 TIGR00803 nst UDP-galactose tr 98.5 1.5E-06 3.2E-11 73.1 11.3 194 24-223 16-221 (222)
46 KOG1444 Nucleotide-sugar trans 98.5 4.3E-06 9.3E-11 72.6 14.1 186 24-232 115-306 (314)
47 TIGR00776 RhaT RhaT L-rhamnose 98.5 1.8E-06 3.8E-11 75.7 12.0 132 88-228 2-138 (290)
48 PRK10452 multidrug efflux syst 98.5 3.8E-06 8.2E-11 63.7 11.5 70 159-228 35-105 (120)
49 PRK10532 threonine and homoser 98.5 5.3E-06 1.2E-10 72.7 14.2 128 84-225 9-136 (293)
50 KOG1583 UDP-N-acetylglucosamin 98.4 1.6E-05 3.4E-10 67.7 14.2 206 12-225 86-313 (330)
51 PRK09541 emrE multidrug efflux 98.3 6.2E-06 1.3E-10 61.6 8.2 69 160-228 36-105 (110)
52 KOG3912 Predicted integral mem 98.2 9.2E-06 2E-10 69.3 9.0 191 23-225 123-333 (372)
53 KOG4510 Permease of the drug/m 98.2 4.7E-07 1E-11 76.6 0.9 137 84-228 35-171 (346)
54 KOG1582 UDP-galactose transpor 98.2 3.4E-05 7.3E-10 65.6 11.8 187 24-228 144-334 (367)
55 KOG1442 GDP-fucose transporter 98.1 3.5E-06 7.5E-11 71.6 5.4 200 11-235 133-336 (347)
56 PF06027 DUF914: Eukaryotic pr 98.1 7.9E-05 1.7E-09 66.4 13.9 138 87-229 17-154 (334)
57 KOG4314 Predicted carbohydrate 98.1 1.2E-05 2.5E-10 65.4 7.5 191 16-228 83-278 (290)
58 PF05653 Mg_trans_NIPA: Magnes 98.1 2.3E-05 4.9E-10 69.0 9.1 122 83-228 3-124 (300)
59 COG2076 EmrE Membrane transpor 98.0 2.5E-05 5.4E-10 57.5 7.6 68 160-227 36-104 (106)
60 PF06800 Sugar_transport: Suga 98.0 0.00028 6.1E-09 60.7 14.1 171 29-223 89-268 (269)
61 PRK11431 multidrug efflux syst 98.0 4.1E-05 9E-10 56.7 7.8 66 161-226 36-102 (105)
62 PF08449 UAA: UAA transporter 98.0 0.00021 4.5E-09 63.0 13.7 111 116-232 32-142 (303)
63 PRK10650 multidrug efflux syst 98.0 0.00012 2.7E-09 54.5 10.3 65 161-225 42-107 (109)
64 PF05653 Mg_trans_NIPA: Magnes 98.0 3E-05 6.5E-10 68.2 8.0 196 24-229 88-295 (300)
65 COG5070 VRG4 Nucleotide-sugar 98.0 2.5E-05 5.4E-10 64.7 6.7 189 24-228 106-298 (309)
66 PF04657 DUF606: Protein of un 97.8 0.00051 1.1E-08 53.5 11.8 130 89-223 3-138 (138)
67 PF00893 Multi_Drug_Res: Small 97.7 0.00047 1E-08 49.9 8.8 58 160-217 35-93 (93)
68 PRK13499 rhamnose-proton sympo 97.6 0.00056 1.2E-08 61.1 9.8 138 84-227 4-154 (345)
69 COG3238 Uncharacterized protei 97.5 0.0045 9.8E-08 48.6 12.4 140 86-228 4-148 (150)
70 PF04142 Nuc_sug_transp: Nucle 97.4 0.00087 1.9E-08 57.3 8.7 69 163-231 26-94 (244)
71 PRK13499 rhamnose-proton sympo 97.2 0.036 7.8E-07 49.6 16.7 175 41-227 136-342 (345)
72 PF06800 Sugar_transport: Suga 97.1 0.0058 1.3E-07 52.7 10.8 82 151-233 43-129 (269)
73 PF10639 UPF0546: Uncharacteri 97.0 0.0069 1.5E-07 45.3 8.8 109 94-224 3-112 (113)
74 KOG1441 Glucose-6-phosphate/ph 96.8 0.0024 5.3E-08 56.4 5.6 123 102-227 32-156 (316)
75 PF13536 EmrE: Multidrug resis 96.3 0.0013 2.8E-08 49.3 0.7 54 4-57 47-105 (113)
76 COG4975 GlcU Putative glucose 96.3 0.0023 4.9E-08 54.0 1.9 134 88-231 3-141 (288)
77 KOG2922 Uncharacterized conser 95.9 0.0022 4.8E-08 56.0 0.2 126 82-231 16-141 (335)
78 KOG2922 Uncharacterized conser 95.8 0.04 8.6E-07 48.4 7.3 79 151-230 225-310 (335)
79 KOG4314 Predicted carbohydrate 95.5 0.0091 2E-07 48.9 2.3 66 166-231 65-130 (290)
80 KOG2234 Predicted UDP-galactos 95.4 0.87 1.9E-05 40.6 14.4 138 89-227 17-165 (345)
81 PF06379 RhaT: L-rhamnose-prot 95.2 0.15 3.3E-06 45.2 9.0 140 84-227 4-154 (344)
82 KOG2765 Predicted membrane pro 95.1 0.025 5.4E-07 50.6 3.9 68 164-231 169-236 (416)
83 PF07857 DUF1632: CEO family ( 95.0 0.052 1.1E-06 46.5 5.6 132 88-231 1-139 (254)
84 PRK02237 hypothetical protein; 94.2 0.32 6.9E-06 35.9 7.2 49 180-228 58-107 (109)
85 KOG1443 Predicted integral mem 93.6 0.27 6E-06 43.0 7.0 125 103-228 32-158 (349)
86 PF00892 EamA: EamA-like trans 93.6 0.027 5.8E-07 41.8 0.7 52 6-57 68-125 (126)
87 COG5006 rhtA Threonine/homoser 93.4 1.6 3.4E-05 37.4 11.0 103 88-198 13-115 (292)
88 COG2510 Predicted membrane pro 93.2 0.016 3.5E-07 44.1 -1.0 34 24-57 105-138 (140)
89 PRK15051 4-amino-4-deoxy-L-ara 93.1 0.029 6.3E-07 41.9 0.2 34 24-57 75-108 (111)
90 KOG1444 Nucleotide-sugar trans 92.9 3 6.4E-05 36.8 12.3 123 96-224 21-147 (314)
91 PF07168 Ureide_permease: Urei 91.2 0.16 3.5E-06 44.3 2.6 130 92-224 1-144 (336)
92 PF04342 DUF486: Protein of un 91.0 0.25 5.4E-06 36.2 3.0 32 194-225 76-107 (108)
93 PF02694 UPF0060: Uncharacteri 90.9 1.3 2.9E-05 32.5 6.7 50 179-228 55-105 (107)
94 KOG1580 UDP-galactose transpor 90.5 0.76 1.6E-05 38.9 5.8 133 92-230 18-161 (337)
95 COG4975 GlcU Putative glucose 90.4 0.049 1.1E-06 46.1 -1.2 133 83-225 148-284 (288)
96 KOG1442 GDP-fucose transporter 90.3 0.41 9E-06 41.3 4.2 112 113-225 58-173 (347)
97 COG3169 Uncharacterized protei 89.2 0.85 1.8E-05 33.0 4.4 34 193-226 82-115 (116)
98 PF05977 MFS_3: Transmembrane 86.3 32 0.00068 32.8 15.0 39 185-223 351-389 (524)
99 PRK10452 multidrug efflux syst 86.2 0.19 4.1E-06 38.1 -0.4 34 24-57 69-102 (120)
100 COG2076 EmrE Membrane transpor 85.3 0.23 4.9E-06 36.7 -0.3 33 24-56 69-101 (106)
101 KOG3912 Predicted integral mem 84.8 2 4.4E-05 37.4 5.1 65 163-227 95-159 (372)
102 PRK09541 emrE multidrug efflux 83.6 0.31 6.7E-06 36.3 -0.2 34 24-57 69-102 (110)
103 PRK11431 multidrug efflux syst 82.8 0.42 9E-06 35.3 0.2 33 24-56 68-100 (105)
104 PRK10650 multidrug efflux syst 81.9 0.47 1E-05 35.3 0.1 33 24-56 74-106 (109)
105 PRK02971 4-amino-4-deoxy-L-ara 77.8 0.6 1.3E-05 35.8 -0.4 25 33-57 97-121 (129)
106 KOG4831 Unnamed protein [Funct 77.6 4.8 0.00011 29.6 4.2 58 167-224 65-123 (125)
107 PRK10489 enterobactin exporter 77.1 56 0.0012 29.4 14.8 38 190-227 361-399 (417)
108 PF03151 TPT: Triose-phosphate 75.9 0.98 2.1E-05 34.9 0.3 44 12-55 101-150 (153)
109 COG1742 Uncharacterized conser 75.3 13 0.00029 27.2 6.0 45 184-228 62-106 (109)
110 KOG1581 UDP-galactose transpor 74.5 41 0.00089 29.7 9.8 110 116-231 51-160 (327)
111 TIGR02840 spore_YtaF putative 74.4 4 8.8E-05 33.9 3.6 46 180-225 33-80 (206)
112 COG3086 RseC Positive regulato 72.4 4.1 8.8E-05 31.7 2.9 26 176-201 70-95 (150)
113 TIGR00881 2A0104 phosphoglycer 70.7 70 0.0015 27.6 11.8 20 95-114 39-58 (379)
114 PRK11010 ampG muropeptide tran 68.7 1E+02 0.0022 28.8 13.0 52 175-226 346-401 (491)
115 PF06379 RhaT: L-rhamnose-prot 67.2 96 0.0021 27.9 13.4 179 36-226 131-340 (344)
116 PRK13108 prolipoprotein diacyl 67.1 31 0.00068 32.3 8.1 47 182-228 225-276 (460)
117 COG4657 RnfA Predicted NADH:ub 66.8 35 0.00077 27.2 7.1 86 29-135 88-185 (193)
118 TIGR00836 amt ammonium transpo 66.2 73 0.0016 29.4 10.2 50 155-204 281-333 (403)
119 PF12606 RELT: Tumour necrosis 65.1 9.7 0.00021 24.1 3.0 18 216-233 13-30 (50)
120 PRK11469 hypothetical protein; 65.0 4.9 0.00011 32.9 2.2 44 182-225 42-86 (188)
121 PF03547 Mem_trans: Membrane t 64.1 1E+02 0.0023 27.6 10.9 16 159-174 68-83 (385)
122 KOG1583 UDP-N-acetylglucosamin 62.1 9.2 0.0002 33.3 3.3 67 168-234 78-145 (330)
123 KOG2766 Predicted membrane pro 61.8 1.7 3.7E-05 37.3 -1.1 107 113-227 45-151 (336)
124 PRK02237 hypothetical protein; 61.7 7 0.00015 28.9 2.2 31 27-57 74-104 (109)
125 PF02694 UPF0060: Uncharacteri 60.9 6.6 0.00014 28.9 2.0 32 26-57 71-102 (107)
126 PRK06638 NADH:ubiquinone oxido 60.8 93 0.002 25.6 10.7 34 195-228 133-168 (198)
127 COG1971 Predicted membrane pro 60.1 8.1 0.00017 31.6 2.5 44 183-226 43-87 (190)
128 COG2271 UhpC Sugar phosphate p 59.8 1.2E+02 0.0026 28.3 10.2 87 37-136 25-113 (448)
129 PRK15049 L-asparagine permease 58.8 1.6E+02 0.0035 27.7 12.3 16 234-249 476-491 (499)
130 COG2807 CynX Cyanate permease 58.1 1.5E+02 0.0032 27.3 10.3 73 153-225 300-379 (395)
131 PF15048 OSTbeta: Organic solu 55.7 15 0.00033 27.8 3.1 27 199-225 25-55 (125)
132 PF10639 UPF0546: Uncharacteri 55.5 9.8 0.00021 28.5 2.1 34 23-56 79-112 (113)
133 PF04306 DUF456: Protein of un 53.8 1E+02 0.0022 23.9 8.4 70 151-230 31-101 (140)
134 PF04246 RseC_MucC: Positive r 53.8 6.7 0.00014 30.1 1.1 47 179-226 66-116 (135)
135 PF06123 CreD: Inner membrane 52.9 2E+02 0.0043 26.9 12.1 124 87-228 300-425 (430)
136 TIGR00905 2A0302 transporter, 52.8 1E+02 0.0022 28.8 9.0 43 186-229 394-437 (473)
137 PRK05122 major facilitator sup 52.6 1.7E+02 0.0036 26.0 13.8 34 192-225 353-386 (399)
138 PF08507 COPI_assoc: COPI asso 52.0 33 0.00071 26.3 4.7 15 117-131 34-48 (136)
139 COG1742 Uncharacterized conser 51.2 10 0.00022 27.9 1.5 30 28-57 74-103 (109)
140 COG4858 Uncharacterized membra 50.9 1.4E+02 0.003 24.6 8.7 48 152-199 126-175 (226)
141 PRK11902 ampG muropeptide tran 50.6 1.9E+02 0.004 25.9 13.3 19 207-225 369-387 (402)
142 PRK10862 SoxR reducing system 50.1 11 0.00025 29.7 1.9 22 179-200 73-94 (154)
143 PF01102 Glycophorin_A: Glycop 49.8 10 0.00022 28.8 1.5 7 213-219 76-82 (122)
144 PF00893 Multi_Drug_Res: Small 49.7 4.5 9.8E-05 28.9 -0.4 25 24-48 68-92 (93)
145 PRK11715 inner membrane protei 48.4 2.3E+02 0.0051 26.4 11.4 123 87-227 306-430 (436)
146 PF00909 Ammonium_transp: Ammo 47.3 1.9E+02 0.0041 26.5 9.7 65 155-219 276-359 (399)
147 TIGR03810 arg_ornith_anti argi 44.2 2.1E+02 0.0045 26.6 9.7 20 209-228 412-431 (468)
148 PRK12437 prolipoprotein diacyl 44.1 1E+02 0.0023 26.6 7.1 47 182-228 206-257 (269)
149 PRK10644 arginine:agmatin anti 43.1 2.7E+02 0.0058 25.6 11.1 67 157-224 354-424 (445)
150 PF01914 MarC: MarC family int 42.7 34 0.00073 28.3 3.7 25 201-225 64-89 (203)
151 PRK10655 potE putrescine trans 42.4 2.7E+02 0.0058 25.5 10.0 38 189-226 389-426 (438)
152 PF15471 TMEM171: Transmembran 42.3 32 0.0007 29.7 3.5 19 208-226 161-179 (319)
153 TIGR01167 LPXTG_anchor LPXTG-m 41.4 29 0.00063 19.4 2.2 18 206-223 10-27 (34)
154 TIGR00892 2A0113 monocarboxyla 39.4 2.5E+02 0.0054 25.8 9.4 8 173-180 357-364 (455)
155 COG5070 VRG4 Nucleotide-sugar 38.9 1.6E+02 0.0035 25.1 7.0 60 171-230 85-144 (309)
156 PF15102 TMEM154: TMEM154 prot 38.4 28 0.00062 27.2 2.4 17 214-230 69-85 (146)
157 CHL00196 psbY photosystem II p 37.8 48 0.001 19.4 2.7 20 87-106 6-25 (36)
158 PF15099 PIRT: Phosphoinositid 37.5 12 0.00025 28.5 0.1 16 155-170 58-73 (129)
159 PF07214 DUF1418: Protein of u 37.4 39 0.00084 24.4 2.8 18 210-227 49-66 (96)
160 PRK09528 lacY galactoside perm 35.9 3.2E+02 0.007 24.4 13.8 6 195-200 370-375 (420)
161 PRK10473 multidrug efflux syst 35.4 3.1E+02 0.0068 24.1 14.1 14 187-200 333-346 (392)
162 MTH00057 ND6 NADH dehydrogenas 33.2 2.6E+02 0.0057 22.6 9.1 34 195-228 132-167 (186)
163 PRK11021 putative transporter; 33.2 3.7E+02 0.008 24.3 9.5 36 188-224 365-400 (410)
164 PF06298 PsbY: Photosystem II 32.8 63 0.0014 18.9 2.6 21 87-107 6-26 (36)
165 KOG2533 Permease of the major 31.8 3.7E+02 0.0081 25.5 9.2 21 183-203 406-426 (495)
166 PRK00052 prolipoprotein diacyl 31.2 1.9E+02 0.0041 25.0 6.6 47 182-228 208-259 (269)
167 TIGR00544 lgt prolipoprotein d 31.0 2.5E+02 0.0055 24.4 7.4 46 182-227 213-267 (278)
168 PRK15419 proline:sodium sympor 30.6 3.2E+02 0.0069 25.8 8.6 14 212-225 457-470 (502)
169 KOG1619 Cytochrome b [Energy p 30.5 3.4E+02 0.0075 23.1 10.0 77 148-225 123-222 (245)
170 PRK10054 putative transporter; 30.3 4E+02 0.0087 23.8 13.4 27 87-114 45-71 (395)
171 PF06645 SPC12: Microsomal sig 30.1 34 0.00073 23.6 1.5 43 186-228 16-58 (76)
172 TIGR00910 2A0307_GadC glutamat 29.3 4.9E+02 0.011 24.5 12.7 15 116-130 331-345 (507)
173 PF11700 ATG22: Vacuole efflux 28.4 5E+02 0.011 24.4 18.2 41 152-192 383-423 (477)
174 PF08507 COPI_assoc: COPI asso 28.2 68 0.0015 24.5 3.1 12 212-223 91-102 (136)
175 PF08693 SKG6: Transmembrane a 27.6 47 0.001 19.9 1.6 18 212-229 21-38 (40)
176 PRK10489 enterobactin exporter 27.5 4.5E+02 0.0097 23.5 10.6 20 95-114 61-80 (417)
177 PRK13240 pbsY photosystem II p 26.8 86 0.0019 18.8 2.6 19 88-106 7-25 (40)
178 PF02659 DUF204: Domain of unk 26.8 52 0.0011 21.6 1.9 38 180-217 26-63 (67)
179 TIGR00893 2A0114 d-galactonate 26.5 4.1E+02 0.0089 22.7 13.2 18 97-114 40-57 (399)
180 PRK14780 lipoprotein signal pe 26.1 79 0.0017 27.2 3.3 14 209-222 206-219 (263)
181 PF13038 DUF3899: Domain of un 25.7 44 0.00095 23.6 1.5 19 207-225 3-21 (92)
182 TIGR01299 synapt_SV2 synaptic 25.6 7E+02 0.015 25.1 14.0 41 94-135 603-643 (742)
183 PF11044 TMEMspv1-c74-12: Plec 25.5 14 0.0003 22.6 -1.0 17 206-222 2-18 (49)
184 PF15345 TMEM51: Transmembrane 25.4 52 0.0011 27.8 2.0 23 212-234 67-89 (233)
185 PRK03893 putative sialic acid 25.0 5.3E+02 0.012 23.5 13.6 12 102-113 327-338 (496)
186 COG2814 AraJ Arabinose efflux 24.9 5.5E+02 0.012 23.6 12.4 41 192-232 350-390 (394)
187 PRK03545 putative arabinose tr 24.7 4.9E+02 0.011 23.0 13.9 36 189-224 341-376 (390)
188 PF07123 PsbW: Photosystem II 24.5 62 0.0013 25.0 2.1 30 83-112 102-131 (138)
189 PRK11357 frlA putative fructos 24.5 4.7E+02 0.01 23.9 8.5 40 188-228 391-435 (445)
190 PRK09874 drug efflux system pr 23.9 5E+02 0.011 22.8 13.7 19 206-224 376-394 (408)
191 PF05297 Herpes_LMP1: Herpesvi 23.9 26 0.00056 30.6 0.0 10 85-94 105-114 (381)
192 PF11446 DUF2897: Protein of u 23.8 70 0.0015 20.6 2.0 7 217-223 11-17 (55)
193 COG2056 Predicted permease [Ge 23.8 59 0.0013 29.6 2.2 26 87-112 57-87 (444)
194 PRK10435 cadB lysine/cadaverin 23.7 5.7E+02 0.012 23.4 10.4 75 154-230 352-427 (435)
195 PRK09579 multidrug efflux prot 23.5 2.5E+02 0.0054 29.3 7.0 34 190-224 880-913 (1017)
196 PRK10591 hypothetical protein; 23.3 2.1E+02 0.0046 20.5 4.5 18 210-227 49-66 (92)
197 TIGR00803 nst UDP-galactose tr 22.8 52 0.0011 27.1 1.6 45 184-228 8-52 (222)
198 COG2034 Predicted membrane pro 22.8 96 0.0021 21.9 2.6 25 209-233 14-38 (85)
199 PF02487 CLN3: CLN3 protein; 22.5 6.2E+02 0.013 23.4 9.1 19 39-57 89-107 (402)
200 PF13127 DUF3955: Protein of u 22.3 2.4E+02 0.0052 18.6 4.5 28 85-112 4-31 (63)
201 PLN00028 nitrate transmembrane 22.1 6.3E+02 0.014 23.3 10.2 14 211-224 417-430 (476)
202 COG0682 Lgt Prolipoprotein dia 21.6 3.3E+02 0.0072 23.9 6.3 76 156-231 192-277 (287)
203 TIGR00891 2A0112 putative sial 21.5 5.4E+02 0.012 22.3 11.4 19 96-114 57-75 (405)
204 PF12768 Rax2: Cortical protei 21.4 93 0.002 27.2 2.9 36 215-250 243-280 (281)
205 TIGR03644 marine_trans_1 proba 21.1 6.6E+02 0.014 23.2 9.3 64 155-219 295-361 (404)
206 KOG0569 Permease of the major 20.4 3.9E+02 0.0084 25.4 7.0 62 156-217 375-442 (485)
207 PF10177 DUF2371: Uncharacteri 20.4 1.6E+02 0.0034 23.0 3.7 17 209-225 42-58 (141)
208 TIGR00882 2A0105 oligosacchari 20.1 6.1E+02 0.013 22.4 12.9 27 87-114 40-66 (396)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=6.4e-28 Score=216.03 Aligned_cols=214 Identities=36% Similarity=0.653 Sum_probs=158.4
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCC--CCCCC-CCCCC-cccccchhhHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFS--SPSNS-NIQLP-VSEYSNWALGGLLLTVTCFSS 99 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~--~~~~~-~~~~~-~~~~~~~~~G~~l~l~aa~~~ 99 (255)
+++++.|++.+|||+++++++|++++++|+.++..+++......+ +.-|. ..+.+ .....+...|+++++.++++|
T Consensus 122 a~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~w 201 (358)
T PLN00411 122 AIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFV 201 (358)
T ss_pred HHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHH
Confidence 455556666689999999999999999999988644443211000 00000 00000 011223467999999999999
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025279 100 ATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN-PSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK 178 (255)
Q Consensus 100 a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~ 178 (255)
|.|++++|+..+++|++...++|++.++.+.+.+.+...+.. ...|..........++|.+++ +.++|.+|++++++.
T Consensus 202 a~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ 280 (358)
T PLN00411 202 SVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHK 280 (358)
T ss_pred HHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 999999999988987555778888888888877766655432 223322222234567888875 668999999999999
Q ss_pred CceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccccccccCCC
Q 025279 179 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGN 238 (255)
Q Consensus 179 ~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~~~~~~~ 238 (255)
+|++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+.|+||.+++++.
T Consensus 281 ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~ 340 (358)
T PLN00411 281 GPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLS 340 (358)
T ss_pred CchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccC
Confidence 999999999999999999999999999999999999999999999988776664444333
No 2
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.92 E-value=1.1e-23 Score=185.10 Aligned_cols=188 Identities=19% Similarity=0.231 Sum_probs=148.1
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK 103 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 103 (255)
.+..+.+++.+|||+++++++|++++++|+.++. .++.. ..+....|+++++.++++|+.|.
T Consensus 98 i~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~-~~~~~-----------------~~~~~~~G~~l~l~aal~~a~~~ 159 (299)
T PRK11453 98 FFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI-EDSLN-----------------GQHVAMLGFMLTLAAAFSWACGN 159 (299)
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc-cccCC-----------------CcchhHHHHHHHHHHHHHHHHHH
Confidence 5667789999999999999999999999999885 21110 01123479999999999999999
Q ss_pred HHHHHHHhhcCCc--chHHHHHHHHHHHHHHHHHHHhccCC---CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025279 104 IFQAAVLKEYPDK--INLVFFSCFFGTIQCAVVSIIVERNP---SAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK 178 (255)
Q Consensus 104 vl~k~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~ 178 (255)
++.||..++.+++ .....+++..+.+.....+...++.. ..+...+...|..++|+|+++++++|.+|++++++.
T Consensus 160 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~ 239 (299)
T PRK11453 160 IFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRY 239 (299)
T ss_pred HHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999986655422 23445666666555554444333221 111122345689999999999999999999999999
Q ss_pred CceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279 179 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 229 (255)
Q Consensus 179 ~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~ 229 (255)
++++++.+.+++|+++.+++++++||++++.+++|+++|++|+++..+.++
T Consensus 240 ~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 240 ETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999998877554
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.90 E-value=1.1e-22 Score=178.50 Aligned_cols=188 Identities=12% Similarity=0.046 Sum_probs=139.3
Q ss_pred hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHH
Q 025279 23 GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATW 102 (255)
Q Consensus 23 ~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~ 102 (255)
..+..+..++.+|||+++++++|++++++|++++. .++..... .+.. ....+...|+++++.++++||.|
T Consensus 102 Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~-~~~~~~~~--------~~~~-~~~~~~~~G~~~~l~aa~~~A~~ 171 (295)
T PRK11689 102 PSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL-GGDNGLSL--------AELI-NNIASNPLSYGLAFIGAFIWAAY 171 (295)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee-cCCccchh--------hhhh-hccccChHHHHHHHHHHHHHHHH
Confidence 45566778888999999999999999999999985 21110000 0000 00012346999999999999999
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCcee
Q 025279 103 KIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVF 182 (255)
Q Consensus 103 ~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~ 182 (255)
+++.||..++.+ +.... ...+.+.+.+.....+ ... .. .+...|..+++.++ +++++|.+|++++|+.++++
T Consensus 172 ~v~~k~~~~~~~-~~~~~---~~~~~~~l~~~~~~~~-~~~-~~-~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~ 243 (295)
T PRK11689 172 CNVTRKYARGKN-GITLF---FILTALALWIKYFLSP-QPA-MV-FSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTL 243 (295)
T ss_pred HHHHhhccCCCC-chhHH---HHHHHHHHHHHHHHhc-Ccc-cc-CCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHH
Confidence 999999877765 45432 2333344333333222 111 11 22346777888885 89999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 183 VALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 183 ~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
++.+.+++|+++++++++++||++++.+++|+++|+.|+++....+
T Consensus 244 ~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 244 LATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 9999999999999999999999999999999999999998876544
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.90 E-value=2.6e-22 Score=175.74 Aligned_cols=181 Identities=17% Similarity=0.205 Sum_probs=148.0
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK 103 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 103 (255)
.+..+...+ +|||+++++++|++++++|+.++. .++. .+....|+++.++++++||.|+
T Consensus 108 l~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~-~~~~-------------------~~~~~~G~l~~l~a~~~~a~~~ 166 (292)
T PRK11272 108 LFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN-SGGN-------------------LSGNPWGAILILIASASWAFGS 166 (292)
T ss_pred HHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh-cCcc-------------------cccchHHHHHHHHHHHHHHHHH
Confidence 445556665 699999999999999999998874 1110 0123579999999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceeh
Q 025279 104 IFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFV 183 (255)
Q Consensus 104 vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~ 183 (255)
+..||..++ + +...+.+++..+.+.+.+.....+.+... ..+...|..+++++++++.++|.+|++++|+.+++++
T Consensus 167 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~ 242 (292)
T PRK11272 167 VWSSRLPLP-V-GMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALA 242 (292)
T ss_pred HHHHhcCCC-c-chHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 999997544 3 36677889889888887776543322211 1234568899999999999999999999999999999
Q ss_pred hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279 184 ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 229 (255)
Q Consensus 184 s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~ 229 (255)
+.+.+++|+++++++++++||++++.+++|+.+|+.|+++..++++
T Consensus 243 s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 243 TSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999877554
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.89 E-value=2e-22 Score=172.93 Aligned_cols=192 Identities=19% Similarity=0.209 Sum_probs=154.1
Q ss_pred ecceeeecccchhhhh------hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcc
Q 025279 7 CNYRYQIQLSDSCFCH------GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVS 80 (255)
Q Consensus 7 ~~~~~~~~~~~~~~~~------~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~ 80 (255)
.+|.++++++++..+. ..+....+.+.+|||+++++++|++++++|++++. .+++
T Consensus 62 ~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~-~~~~------------------ 122 (260)
T TIGR00950 62 VLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL-SDGN------------------ 122 (260)
T ss_pred HHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc-cCCc------------------
Confidence 4445566665554332 35666788888999999999999999999999984 2211
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHH
Q 025279 81 EYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPD-KINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYA 159 (255)
Q Consensus 81 ~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~l 159 (255)
.+....|++++++++++|+.+.++.|+..++.+. +.....+++..+.+++.+.....++.. .. +...|..++++
T Consensus 123 -~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~ 197 (260)
T TIGR00950 123 -LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYL 197 (260)
T ss_pred -ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHH
Confidence 1234689999999999999999999998877652 234455778888888888776543222 11 33467789999
Q ss_pred HHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhh
Q 025279 160 AIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFY 222 (255)
Q Consensus 160 gi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~ 222 (255)
+++++.++|.+|++++++.++++++.+.+++|+++++++++++||+++..+++|+++++.|+.
T Consensus 198 ~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 198 GLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999863
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.88 E-value=1e-21 Score=172.05 Aligned_cols=169 Identities=13% Similarity=0.059 Sum_probs=132.6
Q ss_pred cccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 025279 36 SRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPD 115 (255)
Q Consensus 36 e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~ 115 (255)
||++ +..++.++++|+.++. ..+... +.....|+++.++++++||.|++..||..++++
T Consensus 117 ~~~~--~~~~~~i~~~Gv~li~-~~~~~~-----------------~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~- 175 (293)
T PRK10532 117 RRPV--DFVWVVLAVLGLWFLL-PLGQDV-----------------SHVDLTGAALALGAGACWAIYILSGQRAGAEHG- 175 (293)
T ss_pred CChH--HHHHHHHHHHHHheee-ecCCCc-----------------ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence 4554 4556788899998874 211110 112357999999999999999999999877776
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHH
Q 025279 116 KINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAV 195 (255)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~ 195 (255)
+... .+..+++++++.++....+.. .. .+...|..++++|++++.++|.+|++++|+.++++++.+.++||++++
T Consensus 176 ~~~~-~~~~~~~~~~l~~~~~~~~~~---~~-~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~ 250 (293)
T PRK10532 176 PATV-AIGSLIAALIFVPIGALQAGE---AL-WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAA 250 (293)
T ss_pred chHH-HHHHHHHHHHHHHHHHHccCc---cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHH
Confidence 4665 466677777777766543211 11 122346667899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279 196 FMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK 230 (255)
Q Consensus 196 l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~ 230 (255)
+++++++||++++.+++|+++|+.|++...++++|
T Consensus 251 l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 251 VSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998766544
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.87 E-value=7.8e-22 Score=173.44 Aligned_cols=198 Identities=13% Similarity=0.135 Sum_probs=147.6
Q ss_pred eeecccchhhhh------hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccc
Q 025279 11 YQIQLSDSCFCH------GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSN 84 (255)
Q Consensus 11 ~~~~~~~~~~~~------~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (255)
++.+++++-+.. ..+..+.+++.+|||++++++.|++++++|+++.. . ++ .+.
T Consensus 84 ~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~-~-~~-------------------~~~ 142 (302)
T TIGR00817 84 VSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS-D-TE-------------------LSF 142 (302)
T ss_pred HHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc-C-Cc-------------------ccc
Confidence 355554444332 36667789999999999999999999999998753 1 10 122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh--hcCCcchHHHHHHHHHHHHHHHHHHHhccCC-C--cccc-----cchhHHH
Q 025279 85 WALGGLLLTVTCFSSATWKIFQAAVLK--EYPDKINLVFFSCFFGTIQCAVVSIIVERNP-S--AWKL-----QPGIQRT 154 (255)
Q Consensus 85 ~~~G~~l~l~aa~~~a~~~vl~k~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~--~~~~-----~~~~~~~ 154 (255)
...|++++++++++|++|+++.||..+ +.+ +...+.|++..+.+.++|+....++.. . .+.. .....+.
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT 221 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence 457999999999999999999999877 677 699999999999999999887654311 0 0000 0000111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279 155 AVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK 230 (255)
Q Consensus 155 ~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~ 230 (255)
..++.+..+....+.++++++++.+|++++.+.+++|++++++|++++||++++.+++|+++++.|+++.++.|++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 1222222222233346668999999999999999999999999999999999999999999999999998876543
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.86 E-value=5.9e-21 Score=167.52 Aligned_cols=194 Identities=13% Similarity=0.164 Sum_probs=136.7
Q ss_pred cceecceeeecccchhhhh------hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCC
Q 025279 4 ANICNYRYQIQLSDSCFCH------GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQL 77 (255)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~------~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~ 77 (255)
.++.+|.+++++++...+. ..+..+.+++.+|||+++++++|++++++|++++. ..++
T Consensus 85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~-~~~~--------------- 148 (296)
T PRK15430 85 GNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL-WTFG--------------- 148 (296)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHcC---------------
Confidence 3455666677765555443 36677789999999999999999999999999985 2100
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhH-HHH
Q 025279 78 PVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYP-DKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQ-RTA 155 (255)
Q Consensus 78 ~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 155 (255)
+ . ..++++++++||.|+++.||..++.. .....+.+...++.+...+.. ......+. ..+.. +..
T Consensus 149 -----~-~---~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~ 215 (296)
T PRK15430 149 -----S-L---PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMG-QNPMSLNLL 215 (296)
T ss_pred -----C-c---cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCccccc-CCcHHHHHH
Confidence 0 1 14688899999999999988643221 112333444444444322211 11111111 11222 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279 156 VIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 156 ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~ 227 (255)
+++.|+ .+.++|.+|++++|+.++++++.+.+++|+++.+++++++||++++.+++|+++|+.|+.+...+
T Consensus 216 ~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 216 LIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444555 68899999999999999999999999999999999999999999999999999998887776543
No 9
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.86 E-value=1.8e-20 Score=165.30 Aligned_cols=196 Identities=20% Similarity=0.248 Sum_probs=152.8
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK 103 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 103 (255)
.+.+.+.++.+|+|.++.+++|+++++.|++++... + ...+ .+.+..++...|++++++++++||.++
T Consensus 117 ~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s-D-~~~~----------~~~~~~~~~i~GDll~l~~a~lya~~n 184 (334)
T PF06027_consen 117 PFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS-D-VLSG----------SDSSSGSNPILGDLLALLGAILYAVSN 184 (334)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee-c-cccc----------ccCCCCCccchhHHHHHHHHHHHHHHH
Confidence 455566777778888888999999999999988532 1 1110 001223567899999999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCcee
Q 025279 104 IFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN-PSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVF 182 (255)
Q Consensus 104 vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~ 182 (255)
++.++..++.| +..+..+..+++.++..+...+.+.+ ..... ++.....++....++...-|.+....++..+|+.
T Consensus 185 V~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~--w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~ 261 (334)
T PF06027_consen 185 VLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIH--WTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATF 261 (334)
T ss_pred HHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccC--CChhhHHHHHHHHHHHHHHHHHHHHHHHhCccce
Confidence 99999999988 68889999999999988887776653 22222 2223333333344466778888999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccccccc
Q 025279 183 VALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNM 234 (255)
Q Consensus 183 ~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~~~ 234 (255)
..+-..+..+++++++++++|++++|..++|.++|+.|+++.+..+++++++
T Consensus 262 ~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~ 313 (334)
T PF06027_consen 262 FNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEA 313 (334)
T ss_pred eehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence 9999999999999999999999999999999999999999998766555443
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.84 E-value=6.1e-20 Score=159.88 Aligned_cols=177 Identities=12% Similarity=0.085 Sum_probs=131.4
Q ss_pred hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHH
Q 025279 23 GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATW 102 (255)
Q Consensus 23 ~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~ 102 (255)
..+..+.+++.+|||+++++++|+.+++.|++++. .++. ...+..|..++++++++|+.|
T Consensus 100 p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~-~~~~-------------------~~~~~~g~~~~l~aal~~a~~ 159 (281)
T TIGR03340 100 PLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG-LSRF-------------------AQHRRKAYAWALAAALGTAIY 159 (281)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-cccc-------------------cccchhHHHHHHHHHHHHHHh
Confidence 35555678888999999999999999999999885 2111 012246788999999999999
Q ss_pred HHHHHHHHhhcCCcch----HHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025279 103 KIFQAAVLKEYPDKIN----LVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK 178 (255)
Q Consensus 103 ~vl~k~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~ 178 (255)
+++.|+..++.+ +.. .+.+.++.+++.+.......+... .. ..+..+..+++.+.+++.++|.+|++++++.
T Consensus 160 ~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~ 235 (281)
T TIGR03340 160 SLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYARQILPSATLGGLMIGGAYALVLWAMTRL 235 (281)
T ss_pred hhhccccccchh-cccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999988655444 232 222333332222222221111111 11 1223456778889899999999999999999
Q ss_pred CceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhh
Q 025279 179 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA 223 (255)
Q Consensus 179 ~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l 223 (255)
++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++
T Consensus 236 ~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 236 PVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred CceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999999875
No 11
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=143.98 Aligned_cols=178 Identities=17% Similarity=0.240 Sum_probs=137.1
Q ss_pred HHHHhhhh-hhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccc-hhhHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEK-VAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSN-WALGGLLLTVTCFSSAT 101 (255)
Q Consensus 24 a~~~~~e~-~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~l~aa~~~a~ 101 (255)
.+.....+ +.+|||++++++.+++++++|++++. .++.. ... ...|+++.++++++|+.
T Consensus 108 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~-~~~~~------------------~~~~~~~g~~~~l~a~~~~a~ 168 (292)
T COG0697 108 LFTALLAVLLLLGERLSLLQILGILLALAGVLLIL-LGGGG------------------GGILSLLGLLLALAAALLWAL 168 (292)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhee-cCCCc------------------chhHHHHHHHHHHHHHHHHHH
Confidence 44555665 55599999999999999999999985 21111 011 46899999999999999
Q ss_pred HHHHHHHHHhhcCCcchHHH-HHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 025279 102 WKIFQAAVLKEYPDKINLVF-FSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGP 180 (255)
Q Consensus 102 ~~vl~k~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a 180 (255)
+.+..|+.. +.+ +..... +++. ............ +.. .......+..+.+.|++++++++.+|++++++.++
T Consensus 169 ~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~ 241 (292)
T COG0697 169 YTALVKRLS-RLG-PVTLALLLQLL--LALLLLLLFFLS-GFG--APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGA 241 (292)
T ss_pred HHHHHHHhc-CCC-hHHHHHHHHHH--HHHHHHHHHHhc-ccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999887 554 355555 4444 222222221111 111 11233468889999999999999999999999999
Q ss_pred eehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279 181 VFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 181 ~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~ 227 (255)
.+++.+.+++|+++.+++++++||+++..+++|+.+++.|+.+...+
T Consensus 242 ~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 242 SLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998866
No 12
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.76 E-value=1.2e-17 Score=149.91 Aligned_cols=182 Identities=13% Similarity=0.154 Sum_probs=142.7
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK 103 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 103 (255)
.+..+.+++.+|||++++++.+++++++|+++.. . ++ .+.+..|.+++++|+++|+.++
T Consensus 152 vft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~-~-~~-------------------~~~~~~G~~~~l~s~~~~a~~~ 210 (350)
T PTZ00343 152 VFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS-V-KE-------------------LHFTWLAFWCAMLSNLGSSLRS 210 (350)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee-c-cc-------------------chhHHHHHHHHHHHHHHHHHHH
Confidence 6667789999999999999999999999999985 1 11 1224679999999999999999
Q ss_pred HHHHHHHhhcC------CcchHHHHHHHHHHHHHHHHHHHhccCC--Cccc----ccchhHHHHHHHHHHHHHHHHHHHH
Q 025279 104 IFQAAVLKEYP------DKINLVFFSCFFGTIQCAVVSIIVERNP--SAWK----LQPGIQRTAVIYAAIVGTVIRSSII 171 (255)
Q Consensus 104 vl~k~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~~ll~lgi~~s~~~~~~~ 171 (255)
++.|+..++.+ ++.....++.+.+.++++|+....+... ..+. ......+..+++ .++.+++.|.+|
T Consensus 211 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~ 289 (350)
T PTZ00343 211 IFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLY 289 (350)
T ss_pred HHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHH
Confidence 99999876532 1344555568889999988877554311 0010 001112234445 455789999999
Q ss_pred HH----HHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279 172 AW----CLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 172 ~~----~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~ 227 (255)
+. ++++++|.+.+...++.|++++++|++++||++++.+++|+++++.|++++++-
T Consensus 290 n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 290 NEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 95 999999999999999999999999999999999999999999999999998764
No 13
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.65 E-value=3.3e-15 Score=124.15 Aligned_cols=166 Identities=13% Similarity=0.106 Sum_probs=134.4
Q ss_pred chhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHH
Q 025279 42 KILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVF 121 (255)
Q Consensus 42 ~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~ 121 (255)
+..-+.+++.|+.++. ..+.+ ....+..|..+++.++.||+.|.+..||..+..+. ..-+.
T Consensus 121 d~vwvaLAvlGi~lL~-p~~~~-----------------~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g-~~g~a 181 (292)
T COG5006 121 DFVWVALAVLGIWLLL-PLGQS-----------------VWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG-TAGVA 181 (292)
T ss_pred hHHHHHHHHHHHHhhe-eccCC-----------------cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCC-chHHH
Confidence 7777888999998884 21211 12345789999999999999999999998766664 77788
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHH
Q 025279 122 FSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMF 201 (255)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~ 201 (255)
..+..++++.+|+..-... + ...++.-...-+.++++++.+.|.+-..++++.++...+.+..+||.++.+.++++
T Consensus 182 ~gm~vAaviv~Pig~~~ag-~---~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~ 257 (292)
T COG5006 182 VGMLVAALIVLPIGAAQAG-P---ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIF 257 (292)
T ss_pred HHHHHHHHHHhhhhhhhcc-h---hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH
Confidence 8999999999998863221 1 11233446667788999999999999999999999999999999999999999999
Q ss_pred hCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279 202 LGETPHLGSLIGTVVIAFGFYAVIWAQGK 230 (255)
Q Consensus 202 lgE~~~~~~~lG~~lI~~gv~l~~~~~~~ 230 (255)
+||++++.||+|...|+.+..=..+..+|
T Consensus 258 L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 258 LGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 99999999999999999887655554433
No 14
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.64 E-value=1e-15 Score=116.19 Aligned_cols=125 Identities=22% Similarity=0.457 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025279 97 FSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQ 176 (255)
Q Consensus 97 ~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~ 176 (255)
++||.+.+..|+..++.| |...+.++++.+.+ +.+.....++.. ....+...+...++.+++++.+++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 479999999999999988 79999999999998 666665544332 12223446778888999889999999999999
Q ss_pred ccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279 177 KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 177 ~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~ 225 (255)
+.++++++.+.+++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865
No 15
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.63 E-value=3.3e-15 Score=130.79 Aligned_cols=195 Identities=14% Similarity=0.137 Sum_probs=140.6
Q ss_pred ecceeeecccchhhhh-----h--HHHHhhhhhhhhcccCccc----hhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCC
Q 025279 7 CNYRYQIQLSDSCFCH-----G--QLDTGMEKVAIRSRSSQAK----ILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI 75 (255)
Q Consensus 7 ~~~~~~~~~~~~~~~~-----~--a~~~~~e~~~~~e~~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~ 75 (255)
++|..++++.....+. . .+..+...+.+|||+++++ ++|+++.++|++++...++....
T Consensus 74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~---------- 143 (290)
T TIGR00776 74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAG---------- 143 (290)
T ss_pred hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccc----------
Confidence 5555666664443332 1 3445678889999999999 99999999999887422111000
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHH---HHHH-HHHHHHHHhccCCCcccccchh
Q 025279 76 QLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCF---FGTI-QCAVVSIIVERNPSAWKLQPGI 151 (255)
Q Consensus 76 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~---~~~l-~~~~~~~~~~~~~~~~~~~~~~ 151 (255)
.++..+...|+++.++++++|+.|.+..|+. +++ |...++.++. ++++ +..+. ... ..+ ....
T Consensus 144 ---~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~---~~~--~~~--~~~~ 210 (290)
T TIGR00776 144 ---IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH---ILA--KPL--KKYA 210 (290)
T ss_pred ---cccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH---hcc--cch--HHHH
Confidence 0000223679999999999999999999975 466 6888555544 3333 33322 111 111 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-ccCceehhhhhchHHHHHHHHHHHHhCCCCchhhh----hhHHHHHHhhhhhhc
Q 025279 152 QRTAVIYAAIVGTVIRSSIIAWCLQ-KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSL----IGTVVIAFGFYAVIW 226 (255)
Q Consensus 152 ~~~~ll~lgi~~s~~~~~~~~~~l~-~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~----lG~~lI~~gv~l~~~ 226 (255)
.+..++ .|++ ..+++.+|..+.+ +.++++++.+.+++|+.+++++++++||+.+..++ +|+++|+.|+.+...
T Consensus 211 ~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 211 ILLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 344444 8887 7999999999999 99999999999999999999999999999999999 999999999988654
No 16
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.62 E-value=3.9e-15 Score=127.82 Aligned_cols=168 Identities=10% Similarity=0.076 Sum_probs=114.8
Q ss_pred cceecceeeecccchhhhh------hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCC
Q 025279 4 ANICNYRYQIQLSDSCFCH------GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQL 77 (255)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~------~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~ 77 (255)
.+..+|.++.|+++...+. ..+..+.+++.+|||++++++++++++++|++++... +.
T Consensus 82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~-~~--------------- 145 (256)
T TIGR00688 82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL-KG--------------- 145 (256)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-cC---------------
Confidence 3455666777775555443 3677788999999999999999999999999987521 00
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHH
Q 025279 78 PVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVI 157 (255)
Q Consensus 78 ~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll 157 (255)
+.. .++++++++||.|.+..||..++ + +....... +...+...+... ...+.......+...|..++
T Consensus 146 -----~~~----~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 212 (256)
T TIGR00688 146 -----SLP----WEALVLAFSFTAYGLIRKALKNT-D-LAGFCLET-LSLMPVAIYYLL-QTDFATVQQTNPFPIWLLLV 212 (256)
T ss_pred -----Cch----HHHHHHHHHHHHHHHHHhhcCCC-C-cchHHHHH-HHHHHHHHHHHH-HhccCcccccCchhHHHHHH
Confidence 011 35788999999999999986543 3 22222111 111111111111 11111111111223688888
Q ss_pred HHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHH
Q 025279 158 YAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMF 201 (255)
Q Consensus 158 ~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~ 201 (255)
++|++ +.++|.+|++++|+.++++++.+.|++|+++++++++.
T Consensus 213 ~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 213 LAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 89985 88999999999999999999999999999999999864
No 17
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.61 E-value=1.5e-14 Score=108.42 Aligned_cols=135 Identities=17% Similarity=0.123 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025279 89 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRS 168 (255)
Q Consensus 89 ~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~ 168 (255)
.++++++|+.+++-.+..|-..++.+ |...+..+.+...+.+..+....++. +.....++..|..++..|+ .++++.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~-~~~~~~~~k~~lflilSGl-a~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNW-QAGGEIGPKSWLFLILSGL-AGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCce-ecccccCcceehhhhHHHH-HHHHHH
Confidence 67999999999999999999888888 68889999888888777776654432 1111124557888888896 899999
Q ss_pred HHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279 169 SIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 169 ~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
.+|++++++.+++++..+.-+.|+++++++++++||+++..+++|+.+|++|++++..
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 9999999999999999999999999999999999999999999999999999887643
No 18
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.58 E-value=2.2e-15 Score=126.16 Aligned_cols=189 Identities=17% Similarity=0.168 Sum_probs=144.1
Q ss_pred HhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 025279 27 TGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQ 106 (255)
Q Consensus 27 ~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~ 106 (255)
..+.|..+|||.++...++.++.+.|+++|+ ++++..+. +. .+.+.+..+....|...++.+++..|.-.++.
T Consensus 138 ~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv--RPpFlFG~----~t-~g~~~s~~~~~~~gt~aai~s~lf~asvyIil 210 (346)
T KOG4510|consen 138 IIFAWAFLKEPFTKFEALGSLITLLGVVLIV--RPPFLFGD----TT-EGEDSSQVEYDIPGTVAAISSVLFGASVYIIL 210 (346)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHhhheEEEEe--cCCcccCC----Cc-cccccccccccCCchHHHHHhHhhhhhHHHHH
Confidence 3467777888888889999999999999995 45554422 11 11112223445678889999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhh
Q 025279 107 AAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ-PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVAL 185 (255)
Q Consensus 107 k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~ 185 (255)
|+..|+.+ .+....+..+++.+..++.....+ .+..+ ...+|+..+.+|+ .+.+++.+...++|+-.|..+++
T Consensus 211 R~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkdr~l~~~lGv-fgfigQIllTm~lQiErAGpvai 284 (346)
T KOG4510|consen 211 RYIGKNAH-AIMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKDRWLFVNLGV-FGFIGQILLTMGLQIERAGPVAI 284 (346)
T ss_pred HHhhcccc-EEEEehHHHHHHHHHHHHHHhhcc----ceecCccccceEEEEEehh-hhhHHHHHHHHHhhhhccCCeeh
Confidence 99988887 477777777777776655543322 22222 2346777778898 46699999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 186 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 186 ~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
+.+.+.++|.+|.++++||.|+++.|.|+++++.+...+..+|
T Consensus 285 m~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 285 MTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred hhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 9999999999999999999999999999999998866655433
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.57 E-value=2.8e-14 Score=124.65 Aligned_cols=188 Identities=22% Similarity=0.307 Sum_probs=140.4
Q ss_pred hhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025279 31 KVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVL 110 (255)
Q Consensus 31 ~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~ 110 (255)
.+...||.++.|++++.+++.|+++++.. ++.+ + +....+....|+++++++|+.||.|.++.||..
T Consensus 204 ~if~~e~ft~sKllav~~si~GViiVt~~--~s~~----~-------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~ 270 (416)
T KOG2765|consen 204 AIFPVERFTLSKLLAVFVSIAGVIIVTMG--DSKQ----N-------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKI 270 (416)
T ss_pred HHcCcchhhHHHHHHHHHhhccEEEEEec--cccc----c-------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33335555555999999999999999632 2111 0 011234578999999999999999999999876
Q ss_pred hhcCCcchHH---HHHHHHHHHHHHHHHHHhcc-CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhh
Q 025279 111 KEYPDKINLV---FFSCFFGTIQCAVVSIIVER-NPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALF 186 (255)
Q Consensus 111 ~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~ 186 (255)
.+...-+.+. .+..++..+.+.|..++... ..+.+..++..+...++..+++++.++-++|.++.-.+.+..+.+-
T Consensus 271 ~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~Tlg 350 (416)
T KOG2765|consen 271 GDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLG 350 (416)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheee
Confidence 5542113322 23334444444444443322 2344555565667778889999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279 187 KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 231 (255)
Q Consensus 187 ~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~ 231 (255)
+.++.+.+++.+.++-|.++++.+++|.+.|+.|.+++++..+..
T Consensus 351 mSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 351 MSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred eeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccc
Confidence 999999999999999999999999999999999999998765443
No 20
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.51 E-value=6.6e-13 Score=113.01 Aligned_cols=197 Identities=9% Similarity=0.105 Sum_probs=147.2
Q ss_pred ccceecceeeecccchhhhh------hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCC
Q 025279 3 GANICNYRYQIQLSDSCFCH------GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ 76 (255)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~------~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~ 76 (255)
+.|+..|.++.+-.-..-+. .-+....+++.+|||+++.|++++.++.+|+...+...|.
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~-------------- 148 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS-------------- 148 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC--------------
Confidence 45677776655543222222 2455568999999999999999999999999998644331
Q ss_pred CCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHH
Q 025279 77 LPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAV 156 (255)
Q Consensus 77 ~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (255)
-+. ..+.-|++|+.|..+-|+. +.+ +.+-.+.-++.-.++.+...+..+.+.+......+..+..+
T Consensus 149 -------lpw----val~la~sf~~Ygl~RK~~--~v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LL 214 (293)
T COG2962 149 -------LPW----VALALALSFGLYGLLRKKL--KVD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLL 214 (293)
T ss_pred -------CcH----HHHHHHHHHHHHHHHHHhc--CCc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHH
Confidence 122 4566788999999987664 344 35555556555555555555544433321111234467778
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 157 IYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 157 l~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
+..|. .|.+...++..+-++.+-+..+.++|.+|..-.+++++++||+++..++...+.|-.|+.+...+.
T Consensus 215 v~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 215 VLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888 688999999999999999999999999999999999999999999999999999999999987654
No 21
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.45 E-value=4.4e-12 Score=111.71 Aligned_cols=196 Identities=16% Similarity=0.215 Sum_probs=148.3
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK 103 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 103 (255)
.+.++.+.+.+|+|.+++++.++++..+|+++....+..... ...........|+++++++.++-|...
T Consensus 102 i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~-----------~~~~~~~~~~~G~~ll~~sl~~~a~~~ 170 (303)
T PF08449_consen 102 IPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS-----------SSNSSSFSSALGIILLLLSLLLDAFTG 170 (303)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc-----------ccccccccchhHHHHHHHHHHHHHHHH
Confidence 556678999999999999999999999999998633211100 000111223349999999999999999
Q ss_pred HHHHHHHhhcCC-cchHHHHHHHHHHHHHHHHHHH--hccCCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025279 104 IFQAAVLKEYPD-KINLVFFSCFFGTIQCAVVSII--VERNPSA--WKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK 178 (255)
Q Consensus 104 vl~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~--~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~ 178 (255)
++++|..++++. +.+..++...++.+...+.... .++..+. +....+..+..++...+ .+.++....++..++.
T Consensus 171 ~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~ 249 (303)
T PF08449_consen 171 VYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKF 249 (303)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 999999765432 5778888888988888777665 2221111 11122333444444444 6778888888999999
Q ss_pred CceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279 179 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 231 (255)
Q Consensus 179 ~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~ 231 (255)
++...+....+--+++++++++++|+++++.+|+|.++++.|..+..+.|+|+
T Consensus 250 ~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 250 SALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999988877653
No 22
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.38 E-value=8.3e-13 Score=110.13 Aligned_cols=198 Identities=16% Similarity=0.120 Sum_probs=146.3
Q ss_pred eecccchhhhhh------HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccch
Q 025279 12 QIQLSDSCFCHG------QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNW 85 (255)
Q Consensus 12 ~~~~~~~~~~~~------a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
+-|||+...... -.+....++++|.|.++.|+.|+++|..|+++++.. +-.. .+....++.
T Consensus 98 AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s-DV~a------------gd~aggsnp 164 (336)
T KOG2766|consen 98 AYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS-DVHA------------GDRAGGSNP 164 (336)
T ss_pred ehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe-eecc------------ccccCCCCC
Confidence 667765544332 223446788888888999999999999999998632 1111 111224567
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHH-HHHHH
Q 025279 86 ALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYA-AIVGT 164 (255)
Q Consensus 86 ~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~l-gi~~s 164 (255)
..|+++++++|-+||..++....+.|+.| ..++.....++|+++..+-.++-.++... ..+ ++-...|+ ..++.
T Consensus 165 ~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ~i~~~~~~~t--l~w--~~~i~~yl~f~L~M 239 (336)
T KOG2766|consen 165 VKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQFIFERHHVST--LHW--DSAIFLYLRFALTM 239 (336)
T ss_pred ccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHhhhccceee--Eee--hHHHHHHHHHHHHH
Confidence 89999999999999999999999999988 58888999999999988774332222221 111 22222222 44456
Q ss_pred HHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279 165 VIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 229 (255)
Q Consensus 165 ~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~ 229 (255)
.+-|.+.-..+|..+++...+-....-.|++++ ..||.+.+|...+..+.+..|.++...+++
T Consensus 240 FllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~ 302 (336)
T KOG2766|consen 240 FLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK 302 (336)
T ss_pred HHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence 666777778899999999999999999999998 668999999999999999999999865443
No 23
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.36 E-value=1.2e-11 Score=108.53 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=111.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCccc--ccchhHHHHHHHHHH
Q 025279 84 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWK--LQPGIQRTAVIYAAI 161 (255)
Q Consensus 84 ~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~lgi 161 (255)
+...|.+++++++++|+...+..|.. .+.+ |....+++++++.+++.++.....+ ..+.. ..+...+ .....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKI-FMLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHH-HHHHHHH
Confidence 45689999999999999999999875 6677 7999999999999877766543321 11100 0011122 2334666
Q ss_pred HHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279 162 VGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 162 ~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
+.....+.++++++++.+++.++...++.|++..++++++++|+++..+++|.++.+.|+.++.+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999988653
No 24
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.31 E-value=3.8e-11 Score=103.09 Aligned_cols=136 Identities=11% Similarity=0.142 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCC---CcccccchhH-HHHHHHHHHH
Q 025279 87 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNP---SAWKLQPGIQ-RTAVIYAAIV 162 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~-~~~ll~lgi~ 162 (255)
.|.+++++++++|+...+..|.. .+.+ |.+..+++++++.+++.+......+.. .......... +..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-ccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 48899999999999999999974 5677 799999999999988776654432110 0111111112 3345555654
Q ss_pred HHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279 163 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 163 ~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~ 225 (255)
..+.+.+++++++++++..++.+.++.|++++++++++++|+++..+++|..+.+.|+.++.
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 66889999999999999999999999999999999999999999999999999999988764
No 25
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.29 E-value=9.3e-11 Score=102.12 Aligned_cols=133 Identities=12% Similarity=0.174 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025279 89 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRS 168 (255)
Q Consensus 89 ~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~ 168 (255)
.++.++++++||..++++|+..++.+ +. ..+.+..+.+.+.++...... ...+... +..+...+..+.+.....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYLA-QVGWSRL-PATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhcc-cCCCCCc-chhhHHHHHHHHHHHHHHH
Confidence 46789999999999999998776644 33 456666666666666543211 1122222 2234444455555788999
Q ss_pred HHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279 169 SIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 169 ~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
.++++++++.+++.++.+.+++|+++.+++++++||+++..+++|..+++.|+.+...
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999988764
No 26
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.23 E-value=3.8e-10 Score=86.88 Aligned_cols=122 Identities=13% Similarity=0.136 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 025279 87 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVI 166 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~ 166 (255)
.|.++.+.+.++-+...++.|+..++.++ ...... . +. ..... ..+ ...+++|++++++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~~-~~~~~-----------~~p---~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----IA-ALLAF-----------GLA---LRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----HH-HHHHH-----------hcc---HHHHHHHHHHHHH
Confidence 36788899999999999999998887663 332221 1 10 00000 011 1246789999999
Q ss_pred HHHHHHHHHhccCceehhhhhchHHHHHHHHHHH--HhCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279 167 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVM--FLGETPHLGSLIGTVVIAFGFYAVIWAQG 229 (255)
Q Consensus 167 ~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~--~lgE~~~~~~~lG~~lI~~gv~l~~~~~~ 229 (255)
++.+|.+++++.+++.+..+..+.++...+.++. ++||++++.+++|..+|++|++++.+.++
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999888888885 89999999999999999999999876443
No 27
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.08 E-value=3.9e-09 Score=83.26 Aligned_cols=138 Identities=14% Similarity=0.234 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------cCCcchHHHHHHHHHHHHHHHHHHHhccCCC-c-c-ccc------chhH
Q 025279 88 GGLLLTVTCFSSATWKIFQAAVLKE------YPDKINLVFFSCFFGTIQCAVVSIIVERNPS-A-W-KLQ------PGIQ 152 (255)
Q Consensus 88 G~~l~l~aa~~~a~~~vl~k~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~-~-~~~------~~~~ 152 (255)
|.++++.+.++.|++.++.|+..++ ..++.....+....+.+.+++.....+.... . . ... .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6788999999999999999998655 2236888889999999999998887765321 1 1 000 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279 153 RTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 153 ~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
+..++..|+ ...+.....++.+++.+|...++...+-.+...+.+++++||++++.+++|..+.+.|+++++|
T Consensus 81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 445555555 5557788889999999999999999999999999999999999999999999999999987654
No 28
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.06 E-value=5e-09 Score=94.27 Aligned_cols=140 Identities=11% Similarity=0.120 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 025279 87 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVI 166 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~ 166 (255)
.-.+.+++.-++|+.+.++.|...++--+|....++++.++++++.+++...++... .+......|..+..+|+++ .+
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~-~~~~~~~~~~~l~l~g~~g-~~ 90 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS-LPPLSVSILSKIGLLGFLG-SM 90 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHHHHHH-HH
Confidence 446678888899999999999987764447999999999999999988876543211 1111233567777788877 56
Q ss_pred HHHHHHHHHhccCceehhhhhchHHHHHHHHHHHH------hCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 167 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMF------LGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 167 ~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~------lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
.+.++++++++++++.++++.++.|+++.++++++ ++|+++..+++|.++-++|+.+....+
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~ 158 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH 158 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence 77789999999999999999999999999999999 699999999999999999998876533
No 29
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.05 E-value=6.1e-09 Score=91.23 Aligned_cols=131 Identities=7% Similarity=-0.019 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025279 89 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRS 168 (255)
Q Consensus 89 ~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~ 168 (255)
.+..++..+.|+...+..|...++.+ |...+++++.+++++++++.....+.. .+..++......|++.....+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHPL-----PTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CcHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999998877787 799999999999998887765432111 123356666778887777788
Q ss_pred HHHHHHH-hccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279 169 SIIAWCL-QKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 169 ~~~~~~l-~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
.+++++. ++.+++.++.+.+++|++..+++++ +||+++..+++|..+.+.|+++...
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 8999999 9999999999999999999999986 7999999999999999999988764
No 30
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.04 E-value=1.5e-08 Score=88.82 Aligned_cols=203 Identities=13% Similarity=0.152 Sum_probs=129.2
Q ss_pred eecccchhhhhhHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHH
Q 025279 12 QIQLSDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLL 91 (255)
Q Consensus 12 ~~~~~~~~~~~~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l 91 (255)
.-|+-...|++ +.++.++||.+++||.++++.+.|+.++-...++. +++.......+...|...
T Consensus 124 t~qlKI~tTA~------f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~----------~~a~~~~~~~n~~~G~~a 187 (345)
T KOG2234|consen 124 TYQLKILTTAI------FSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP----------TGAKSESSAQNPFLGLVA 187 (345)
T ss_pred hhhHHHHHHHH------HHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC----------CCccCCCcccchhhhHHH
Confidence 34445555555 45556777788889999999999999984111111 111112334567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 025279 92 LTVTCFSSATWKIFQAAVLKEYPDK-INLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSI 170 (255)
Q Consensus 92 ~l~aa~~~a~~~vl~k~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~ 170 (255)
.+.+|+.-+...++..|..|+-..+ +.-+.-...+|.++.+...+..+.....|.- -...|-...+.-++..+++=.+
T Consensus 188 vl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~g-ff~G~s~~vw~vVl~~a~gGLl 266 (345)
T KOG2234|consen 188 VLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYG-FFYGYSSIVWLVVLLNAVGGLL 266 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCC-ccccccHHHHHHHHHHhccchh
Confidence 9999999999999999998764322 3334444456666655544433221110100 0001112222333344444445
Q ss_pred HHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279 171 IAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 231 (255)
Q Consensus 171 ~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~ 231 (255)
-..-+++.+--.=+....+..+++.+.++.++|-+++....+|..+++.++.++...+.++
T Consensus 267 vs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 267 VSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 5555666655544566667888999999999999999999999999999999988655544
No 31
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.03 E-value=4.1e-09 Score=90.28 Aligned_cols=119 Identities=12% Similarity=-0.004 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025279 99 SATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK 178 (255)
Q Consensus 99 ~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~ 178 (255)
|+...+..|...++..++.....++++.+.+.+.+..... ....++...+..|.++..+.+.++++++++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666677777655544478888889888888777655321 1233566677788888889999999999999
Q ss_pred CceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279 179 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 179 ~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
+++.++++..++|++..++++++++|++++.+++|..+.+.|+.+...
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999999999999999999999988754
No 32
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.02 E-value=8.7e-09 Score=85.42 Aligned_cols=187 Identities=13% Similarity=0.164 Sum_probs=142.2
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK 103 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 103 (255)
+.+++++.+..|++.+|++...++..+.|+++. .++.....+ ........|.++.+++--.=++-.
T Consensus 123 IPVMilGVl~~~KsY~w~kY~cVL~IV~GValF-mYK~~Kv~g-------------~e~~t~g~GElLL~lSL~mDGlTg 188 (337)
T KOG1580|consen 123 IPVMILGVLFAHKSYHWRKYCCVLMIVVGVALF-MYKENKVGG-------------AEDKTFGFGELLLILSLAMDGLTG 188 (337)
T ss_pred cceeeeehhhhcccccHHHHHHHHHHHHHHHHh-hccccccCC-------------CcccccchHHHHHHHHHHhcccch
Confidence 344556777788889999999999999999998 465443321 122346789999999988888888
Q ss_pred HHHHHHHhhcCC-cchHHHHHHHHHHHHHHHHHHHhccCCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 025279 104 IFQAAVLKEYPD-KINLVFFSCFFGTIQCAVVSIIVERNPSA--WKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGP 180 (255)
Q Consensus 104 vl~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a 180 (255)
..+.|..+++.. -...+.+..+++.+.+..-..+.++-.+. +....|..|+-+..+++ ++.+++.+.+.-+...+|
T Consensus 189 ~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgP 267 (337)
T KOG1580|consen 189 SIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGP 267 (337)
T ss_pred hHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCC
Confidence 888887666432 35566777777777766544443322111 11223445677777887 899999999999999999
Q ss_pred eehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279 181 VFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 181 ~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~ 225 (255)
..-|++...--+|+++.++++++.+++.+||+|..+++.+...=.
T Consensus 268 LtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 268 LTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred eeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 999999999999999999999999999999999999999987744
No 33
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.02 E-value=7.9e-09 Score=90.82 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025279 90 LLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSS 169 (255)
Q Consensus 90 ~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~ 169 (255)
++.++++++|+...+..|...++.+ |...+++++.++++.++++.. . .. . .+..++..|+......+.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~--~---~~----~--~~~~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA--R---PK----V--PLNLLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc--C---CC----C--chHHHHHHHHHHHHHHHH
Confidence 5688899999999999998888888 799999999998776554331 1 00 0 122333445545555666
Q ss_pred HHHHHHhc-cCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279 170 IIAWCLQK-KGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 170 ~~~~~l~~-~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
+++.++++ .++..++.+.+++|++..++++++++|+++..+++|.++.+.|+.+..+
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 77888887 5788999999999999999999999999999999999999999988764
No 34
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.01 E-value=2.4e-09 Score=80.58 Aligned_cols=108 Identities=15% Similarity=0.252 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHH
Q 025279 121 FFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVM 200 (255)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~ 200 (255)
.+++.++.+.+........+..+.+.......+...+..|+++...++.++++++++.++ .++....+.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence 356677777776666553321111111112235566667887777999999999999995 8889999999999999999
Q ss_pred HhCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279 201 FLGETPHLGSLIGTVVIAFGFYAVIWAQG 229 (255)
Q Consensus 201 ~lgE~~~~~~~lG~~lI~~gv~l~~~~~~ 229 (255)
+++|+++..+++|.++++.|+.++.+.+.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999887553
No 35
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.98 E-value=1.1e-08 Score=89.78 Aligned_cols=131 Identities=13% Similarity=0.083 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 025279 87 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVI 166 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~ 166 (255)
.+.+.++.++++|+......|...++.| |.....+++..+.+++.++.. .+ ... ...+..+ ..+.+....
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~----~~-~~~---~~~~~~~-~~~~l~~~~ 73 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTVG----FP-RLR---QFPKRYL-LAGGLLFVS 73 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHcc----cc-ccc---cccHHHH-HHHhHHHHH
Confidence 4577899999999999999999988998 799999999999988876531 11 111 1112222 233334445
Q ss_pred HHHHHHHHHh----ccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279 167 RSSIIAWCLQ----KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 167 ~~~~~~~~l~----~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~ 227 (255)
.+.+++.+++ ..++..++.+.++.|++..++++++++|+++..+++|..+.+.|+.+....
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 5555666665 457788899999999999999999999999999999999999999887653
No 36
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.90 E-value=5.3e-08 Score=83.13 Aligned_cols=188 Identities=16% Similarity=0.191 Sum_probs=123.2
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK 103 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 103 (255)
.+..++.++.+|+|.+++||+++++-++|++++........+. ++++.............|.++.++++++-+...
T Consensus 55 l~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~----~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~ag 130 (244)
T PF04142_consen 55 LFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN----SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAG 130 (244)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc----ccccccccccccchhHhHHHHHHHHHHHHHHHH
Confidence 3344567788899999999999999999999984221111000 000000011123456799999999999999999
Q ss_pred HHHHHHHhhcCC-cchHHHHHHHHHHHHHHHHHHHhccC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCce
Q 025279 104 IFQAAVLKEYPD-KINLVFFSCFFGTIQCAVVSIIVERN-PSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPV 181 (255)
Q Consensus 104 vl~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~ 181 (255)
++..|..|+.+. ....+....++|.++.++.....+.. ..+..... .+-...+.-++...++=.+....+|+.+.-
T Consensus 131 Vy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~--G~~~~~~~~i~~~a~gGllva~v~KyadnI 208 (244)
T PF04142_consen 131 VYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFH--GYSWWVWIVIFLQAIGGLLVAFVLKYADNI 208 (244)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchh--hcchHHHHHHHHHHHhhHHHHHHHHHHhHH
Confidence 999999887532 34445556666777666554433221 11111101 111222334444555556677778888877
Q ss_pred ehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHH
Q 025279 182 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI 217 (255)
Q Consensus 182 ~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI 217 (255)
.=+....+.-+.+.+.+++++|.+++....+|+.++
T Consensus 209 ~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 209 VKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 778888889999999999999999999999998653
No 37
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.88 E-value=2.3e-09 Score=94.03 Aligned_cols=186 Identities=13% Similarity=0.141 Sum_probs=144.1
Q ss_pred HHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHH
Q 025279 25 LDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKI 104 (255)
Q Consensus 25 ~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v 104 (255)
+....+++..+|+.++.....++....|+.+-.. ++.+.+..|.+.++.+.+..+..++
T Consensus 122 ~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~---------------------~e~~fn~~G~i~a~~s~~~~al~~I 180 (316)
T KOG1441|consen 122 FTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV---------------------TELSFNLFGFISAMISNLAFALRNI 180 (316)
T ss_pred hHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee---------------------ccccccHHHHHHHHHHHHHHHHHHH
Confidence 3446899999999999999999999999988752 1223568999999999999999999
Q ss_pred HHHHHHh----hcCCcchHHHHHHHHHHHHHH-HHHHHhccCCC-cccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025279 105 FQAAVLK----EYPDKINLVFFSCFFGTIQCA-VVSIIVERNPS-AWKL-QPGIQRTAVIYAAIVGTVIRSSIIAWCLQK 177 (255)
Q Consensus 105 l~k~~~~----~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~-~~~~-~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~ 177 (255)
+.|+..+ +.+ ++....++.-++.+.++ |+....++... .+.. ++......+++.. +....-+..-++.+.+
T Consensus 181 ~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~ 258 (316)
T KOG1441|consen 181 LSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGR 258 (316)
T ss_pred HHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcc
Confidence 9999874 255 58888888888888888 77765444322 0011 1121233333334 3555566777899999
Q ss_pred cCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccccc
Q 025279 178 KGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESN 233 (255)
Q Consensus 178 ~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~~ 233 (255)
+.|.+-++...+--.+.++.+|+++++++++.+..|.++.++|++++++.|.++++
T Consensus 259 tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 259 TSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred cCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999987766543
No 38
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.87 E-value=1e-07 Score=85.70 Aligned_cols=125 Identities=10% Similarity=0.053 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025279 100 ATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKG 179 (255)
Q Consensus 100 a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~ 179 (255)
..+++.+|...++.|.|+.++.++++++.+.+.++........++.. .....|..++.+|++... .+...+.++++.+
T Consensus 62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~-~~~~~~~sl~~~s 139 (350)
T PTZ00343 62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLF-VHFGAVISMGLGA 139 (350)
T ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc
Confidence 44567888888888757999999999998876544321111111111 122356778888886654 4777789999999
Q ss_pred ceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279 180 PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 180 a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
++.++.+..++|++.+++++++++|+++..+++|.+++++|+.+...
T Consensus 140 vs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 140 VSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 99999999999999999999999999999999999999999998763
No 39
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.86 E-value=8.1e-08 Score=84.44 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 025279 101 TWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGP 180 (255)
Q Consensus 101 ~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a 180 (255)
.+++++|...++.+.|...+.+++..+.+...+. .... ...... .+..+|..++..|++. .+.+.+.+++++++++
T Consensus 16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~ 91 (302)
T TIGR00817 16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSG-LPKRLK-ISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAV 91 (302)
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhC-CCCCCC-CCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccH
Confidence 4456778888876668999999999987766544 1111 111111 1234677888889874 6788999999999999
Q ss_pred eehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279 181 VFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 181 ~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~ 225 (255)
+.++.+..+.|++..++++++++|+++..+++|.++++.|+.+..
T Consensus 92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999997753
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.82 E-value=4.7e-08 Score=73.39 Aligned_cols=67 Identities=15% Similarity=0.014 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279 159 AAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 159 lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~ 225 (255)
.++++.++++.+|.+++++.|.+++....++.++++.++|++++||++++.+++|..+++.|+.++.
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3446778899999999999999999999999999999999999999999999999999999998754
No 41
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.74 E-value=1.4e-07 Score=80.79 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=116.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCccc-ccchhHHHHHHHHHHHH
Q 025279 85 WALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWK-LQPGIQRTAVIYAAIVG 163 (255)
Q Consensus 85 ~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~lgi~~ 163 (255)
...|+++.+.+-+.|+.-..+.|-. ++.| +.++..++.+++.+.++.+.....+....+. ...+..+......++.
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l- 81 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL- 81 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-
Confidence 4589999999999999999998764 6677 6999999999999988877665544322222 2234456666666664
Q ss_pred HHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 164 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 164 s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
...-..+|.|+..+....++|+-.++.|++.+++|.+|++|+++..|++..++..+||....+..
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 55889999999999999999999999999999999999999999999999999999998877654
No 42
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.66 E-value=1.1e-06 Score=75.85 Aligned_cols=142 Identities=13% Similarity=0.124 Sum_probs=105.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHH
Q 025279 85 WALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGT 164 (255)
Q Consensus 85 ~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s 164 (255)
...+....+..++.|+......|...++..++......+...+.+...+..... ....... ...+......+.+..
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~ 80 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLE--PRGLRPA--LRPWLLLLLLALLGL 80 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhh--ccccccc--ccchHHHHHHHHHHH
Confidence 456788888888999999999988776623234444557776666633333211 1111111 111445566777788
Q ss_pred HHHHHHHHHHHhccCceehhhhhchHHHHHHHHHH-HHhCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279 165 VIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAV-MFLGETPHLGSLIGTVVIAFGFYAVIWAQGK 230 (255)
Q Consensus 165 ~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~-~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~ 230 (255)
...+.+++.++++.++..++.+.++.|++..++++ ++++|++++.++.|..+.+.|+.++.++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 89999999999999999999999999999999997 7779999999999999999999998875543
No 43
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.64 E-value=5.8e-07 Score=77.29 Aligned_cols=193 Identities=14% Similarity=0.149 Sum_probs=142.3
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK 103 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 103 (255)
..+++..++..|+|.+..+-+...+.-.|+.+..+.+.++ +...+...+..+|..++...-..=+.-+
T Consensus 121 IPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~------------s~~~~g~~ns~~G~~Ll~~~L~fDgfTn 188 (327)
T KOG1581|consen 121 IPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD------------SSSKSGRENSPIGILLLFGYLLFDGFTN 188 (327)
T ss_pred hHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC------------CccccCCCCchHhHHHHHHHHHHHhhHH
Confidence 6677889999999999999999999999998875432211 0111233456789999888777777777
Q ss_pred HHHHHHHhh--cCCcchHHHHHHHHHHHHHHHHHHHhccCCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025279 104 IFQAAVLKE--YPDKINLVFFSCFFGTIQCAVVSIIVERNPSA--WKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKG 179 (255)
Q Consensus 104 vl~k~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~ 179 (255)
..+.++.++ .. +...+++..+++.+......+..++..+. +-...+..+.-++.... ++.+++.+-++-+++-|
T Consensus 189 ~tQd~lf~~~k~s-~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FG 266 (327)
T KOG1581|consen 189 ATQDSLFKKYKVS-SLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFG 266 (327)
T ss_pred hHHHHHhccCCcc-HhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcc
Confidence 777777664 23 46677777777777665543322222221 11122334555666666 66799999999999999
Q ss_pred ceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279 180 PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK 230 (255)
Q Consensus 180 a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~ 230 (255)
+..-+.++.+==+++++++.+.+|.++++.||+|..+++.|+.+-...|++
T Consensus 267 slt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 267 SLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999886665544
No 44
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.58 E-value=4.3e-06 Score=72.07 Aligned_cols=175 Identities=16% Similarity=0.190 Sum_probs=117.4
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK 103 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 103 (255)
+..+.+|++.+ .-..-+++...|+++++ ++.. +.+..|..+.++++++-++--
T Consensus 128 s~if~lEk~~w------~L~l~v~lI~~Glflft-~KsT--------------------qf~i~Gf~lv~~aS~~sGlRW 180 (349)
T KOG1443|consen 128 SLIFKLEKFRW------ALVLIVLLIAVGLFLFT-YKST--------------------QFNIEGFFLVLAASLLSGLRW 180 (349)
T ss_pred HHHHHhHHHHH------HHHHHHHHHhhheeEEE-eccc--------------------ceeehhHHHHHHHHHhhhhhH
Confidence 44555555444 48888888889999885 4332 235678888887777766666
Q ss_pred HHHHHHHhhcC----CcchHHHHHHHHHHHHHHHHHHHhccCCC-----cccccchh-HHHHHHHHHHHHHHHHHHH---
Q 025279 104 IFQAAVLKEYP----DKINLVFFSCFFGTIQCAVVSIIVERNPS-----AWKLQPGI-QRTAVIYAAIVGTVIRSSI--- 170 (255)
Q Consensus 104 vl~k~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~-~~~~ll~lgi~~s~~~~~~--- 170 (255)
.+.+...++.| +|++......-.-.+.+++..+..|+... .+....+. .+..+.+++. +...++.+
T Consensus 181 ~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~s 259 (349)
T KOG1443|consen 181 AFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFS 259 (349)
T ss_pred HHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHH
Confidence 66666655543 26776666666666667777777776321 12211221 2222333333 33344433
Q ss_pred HHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279 171 IAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 171 ~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
-+..+.+++....++....--+-..+++.++.+++++...|+|..+...|+.+...
T Consensus 260 EflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 260 EFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 35667778888889998889999999999999999999999999999999998744
No 45
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.50 E-value=1.5e-06 Score=73.06 Aligned_cols=194 Identities=13% Similarity=0.091 Sum_probs=112.8
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCC--C------CCCCCCCCCCCCCcccccchhhHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPL--L------GFSSPSNSNIQLPVSEYSNWALGGLLLTVT 95 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a 95 (255)
.+..+.+....++|.+..|+++.++...|++.....+.+.. . ...+.+.. ........+...|....+.+
T Consensus 16 ~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~--~~~~~~~g~~~~g~~~~l~a 93 (222)
T TIGR00803 16 VLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQS--SAKTLMFGNPVVGLSAVLSA 93 (222)
T ss_pred HHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCC--CccccccccHHHHHHHHHHH
Confidence 44555666667777667788888887777765321100000 0 00000000 00001112456777778888
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchH-HHHHHHHHHHHHHHHHHHhccC-CCccc--ccchhHHHHHHHHHHHHHHHHHHHH
Q 025279 96 CFSSATWKIFQAAVLKEYPDKINL-VFFSCFFGTIQCAVVSIIVERN-PSAWK--LQPGIQRTAVIYAAIVGTVIRSSII 171 (255)
Q Consensus 96 a~~~a~~~vl~k~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~ll~lgi~~s~~~~~~~ 171 (255)
+++-+...++.++..++.+..... +....+++.+.........+.. ...+. ...+.. .+.-++....+..+.
T Consensus 94 ~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~~v 169 (222)
T TIGR00803 94 LLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTA----VWIVGLLNVGGGLCI 169 (222)
T ss_pred HHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchH----HHHHHHHHHhcCcee
Confidence 888778888888875554321111 1122223333211111111111 11111 011111 112223566777889
Q ss_pred HHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhh
Q 025279 172 AWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA 223 (255)
Q Consensus 172 ~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l 223 (255)
.+.+++.++...+....++++++.+++++++||+++..+++|+.+++.|+++
T Consensus 170 ~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 170 GGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred eehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 9999999999999999999999999999999999999999999999998765
No 46
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=4.3e-06 Score=72.60 Aligned_cols=186 Identities=14% Similarity=0.169 Sum_probs=139.8
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK 103 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 103 (255)
......|...++.|+++..+.++..-.+|...-.. .+.+.+..|..|++..+++-+.+.
T Consensus 115 i~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~---------------------~d~sf~~~gY~w~~~n~~~~a~~~ 173 (314)
T KOG1444|consen 115 ILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF---------------------TDLSFNLRGYSWALANCLTTAAFV 173 (314)
T ss_pred HHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc---------------------ccceecchhHHHHHHHHHHHHHHH
Confidence 55667899999999999999999998888777631 112334568999999999999999
Q ss_pred HHHHHHHhh--cCCcchHHHHHHHHHHHHHHHHHHHhccCCC-ccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025279 104 IFQAAVLKE--YPDKINLVFFSCFFGTIQCAVVSIIVERNPS-AWK---LQPGIQRTAVIYAAIVGTVIRSSIIAWCLQK 177 (255)
Q Consensus 104 vl~k~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~---~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~ 177 (255)
+..|+..+. .. ....+++..++..+.+....++.++... ... ......+..+...++.+- +-..+-++..+.
T Consensus 174 v~~kk~vd~~~l~-~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf-~isy~s~~ct~~ 251 (314)
T KOG1444|consen 174 VYVKKSVDSANLN-KFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGF-GISYTSFLCTRV 251 (314)
T ss_pred HHHHHhhcccccc-ceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence 999987543 33 3677889999999988888877654110 011 112234566666677544 444566788888
Q ss_pred cCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccccc
Q 025279 178 KGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKES 232 (255)
Q Consensus 178 ~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~ 232 (255)
.+++..+......-....+-..+++|++.++..++|..+-++|=.+..+.+.+++
T Consensus 252 ~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k 306 (314)
T KOG1444|consen 252 NSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK 306 (314)
T ss_pred ccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence 8998888888888888899999999999999999999998888777777665443
No 47
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.50 E-value=1.8e-06 Score=75.72 Aligned_cols=132 Identities=11% Similarity=0.083 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 025279 88 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIR 167 (255)
Q Consensus 88 G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~ 167 (255)
|.++.++++++|+...+..|+.. ..+ +.... ...++.+++........+ +. .. ....+..-+..|+ .-.++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~-~~-~~--~~~~~~~g~l~G~-~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVL-PE-FW--ALSIFLVGLLSGA-FWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhC-Cc-cc--ccHHHHHHHHHHH-HHHhh
Confidence 57889999999999999998865 444 23332 355566655544443322 11 11 1222332333333 25678
Q ss_pred HHHHHHHHhccCceehhhhhc-hHHHHHHHHHHHHhCCCCchhh----hhhHHHHHHhhhhhhccc
Q 025279 168 SSIIAWCLQKKGPVFVALFKP-LGTAIAVFMAVMFLGETPHLGS----LIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 168 ~~~~~~~l~~~~a~~~s~~~~-l~Pi~a~l~~~~~lgE~~~~~~----~lG~~lI~~gv~l~~~~~ 228 (255)
+.+|+.++|+.+.+.+-.+.+ ++|+++.+++.+++||+.+..+ ++|.++++.|+++....+
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 899999999999999988888 9999999999999999999999 999999999988875543
No 48
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.46 E-value=3.8e-06 Score=63.66 Aligned_cols=70 Identities=14% Similarity=0.257 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 159 AAIVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 159 lgi~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
..++..++++.++.+++|+.|...+ +...-+.-+..++.+++++||++++.+++|..+|+.|++..+...
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3455677899999999999999988 666788999999999999999999999999999999998886544
No 49
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.46 E-value=5.3e-06 Score=72.69 Aligned_cols=128 Identities=11% Similarity=0.076 Sum_probs=99.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHH
Q 025279 84 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVG 163 (255)
Q Consensus 84 ~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~ 163 (255)
+...|..++++++++|+......|...++.| |....+++++++.+++.++...... .. +..++...+..|+.
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~-----~~-~~~~~~~~~~~g~~- 80 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL-----RF-AKEQRLPLLFYGVS- 80 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc-----cC-CHHHHHHHHHHHHH-
Confidence 3468999999999999999999999888888 7999999999999888765432111 11 22345566667764
Q ss_pred HHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279 164 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 164 s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~ 225 (255)
....+.++++++++.+++.++.+.++.|++..+++. |++.. ..+..+.+.|+.++.
T Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~ 136 (293)
T PRK10532 81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLL 136 (293)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheee
Confidence 567788899999999999999999999999998873 55544 455667788887765
No 50
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.37 E-value=1.6e-05 Score=67.74 Aligned_cols=206 Identities=13% Similarity=0.158 Sum_probs=122.2
Q ss_pred eecccchhhhhh-----HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCC-Ccccccch
Q 025279 12 QIQLSDSCFCHG-----QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQL-PVSEYSNW 85 (255)
Q Consensus 12 ~~~~~~~~~~~~-----a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 85 (255)
-.+.+.|.-.++ ..-+...++..++|.+.+|..++++.-+|+++-++.+....+... .+-..+ +.++..-+
T Consensus 86 ~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~---~~l~~~~~~~~~~~w 162 (330)
T KOG1583|consen 86 KFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKL---SGLDSGSAQSDFFWW 162 (330)
T ss_pred eecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhh---cccccCcccccchHH
Confidence 444455544442 334457888889999999999999999999998754333222100 000111 11223346
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHHHHH-Hhcc-----CCCcc-----cccchhHH
Q 025279 86 ALGGLLLTVTCFSSATWKIFQAAVLKEYP-DKINLVFFSCFFGTIQCAVVSI-IVER-----NPSAW-----KLQPGIQR 153 (255)
Q Consensus 86 ~~G~~l~l~aa~~~a~~~vl~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~-----~~~~~-----~~~~~~~~ 153 (255)
..|+.+...+-+.-|.-.+.+.+.-+++. ++-+..++.=.+..+..+...- +..+ ..+.+ ...-|..|
T Consensus 163 ~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~ 242 (330)
T KOG1583|consen 163 LIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMW 242 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHH
Confidence 78888777777766666555555444321 1355566665555554443321 0000 00101 11112234
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279 154 TAVIYAAIVGTVIRSSII----AWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 154 ~~ll~lgi~~s~~~~~~~----~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~ 225 (255)
..++ ...+.+..- +..-.+..+.++++...+--.++.+++++.++.++++.+|+|..+++.|-++..
T Consensus 243 ~yLl-----~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 243 VYLL-----FNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHH-----HHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 3332 223333332 333445567788999999999999999999999999999999999999987754
No 51
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.26 E-value=6.2e-06 Score=61.65 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 160 AIVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 160 gi~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
.+++..+++.++..++|+.|...+ +...-+.-+..++++++++||++++.+++|..+|+.|++..+...
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 455677899999999999999988 777888999999999999999999999999999999999986543
No 52
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.20 E-value=9.2e-06 Score=69.32 Aligned_cols=191 Identities=16% Similarity=0.205 Sum_probs=128.0
Q ss_pred hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHH
Q 025279 23 GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATW 102 (255)
Q Consensus 23 ~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~ 102 (255)
+.+.-++....+++++..++|+|++...+|++++. ..+-... ..+-.+.++...|+++.+.+-+.-|+-
T Consensus 123 iIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg-~~d~~~~----------~~p~~d~s~iitGdllIiiaqiivaiQ 191 (372)
T KOG3912|consen 123 IIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG-SLDVHLV----------TDPYTDYSSIITGDLLIIIAQIIVAIQ 191 (372)
T ss_pred hhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee-eeecccc----------cCCccccccchhhhHHHHHHHHHHHHH
Confidence 45666678888899999999999999999999983 2111110 011123456788999999999999999
Q ss_pred HHHHHHHHhh--cCCcchHHHHHHHHHHHHHHHHHHHhccC--CCcccccch---hHHH---------HHHHHHHHHHHH
Q 025279 103 KIFQAAVLKE--YPDKINLVFFSCFFGTIQCAVVSIIVERN--PSAWKLQPG---IQRT---------AVIYAAIVGTVI 166 (255)
Q Consensus 103 ~vl~k~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~---~~~~---------~ll~lgi~~s~~ 166 (255)
.++-.|..++ ++ |...+.|..++|.+++..++.++..- ...++..+. .+|. ..+++...+..+
T Consensus 192 ~v~Eek~l~~~nV~-pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~v 270 (372)
T KOG3912|consen 192 MVCEEKQLKKSNVA-PLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTV 270 (372)
T ss_pred HHHHHhhhhhccCC-HHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhh
Confidence 9998887654 45 79999999999977766555433110 001111110 1111 122333333334
Q ss_pred HHHHHH---HHH-hccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279 167 RSSIIA---WCL-QKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 167 ~~~~~~---~~l-~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~ 225 (255)
.-.+++ .++ +..++++=.++-.+-..+.=+++.....|.++..|+.|..+...|.++++
T Consensus 271 SiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 271 SIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred heeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433443 223 33456666777777777777888888999999999999999999999886
No 53
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.18 E-value=4.7e-07 Score=76.60 Aligned_cols=137 Identities=17% Similarity=0.196 Sum_probs=97.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHH
Q 025279 84 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVG 163 (255)
Q Consensus 84 ~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~ 163 (255)
...+|..+..++ ..+....++.++..++. |......+++.-.++..+-.+..-+. ...+...-.++++=|+.+
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~~----v~gp~g~R~~LiLRg~mG 107 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQP----VIGPEGKRKWLILRGFMG 107 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEeee----eecCCCcEEEEEeehhhh
Confidence 455788888777 77777888888876664 47766666444444333322211111 111112223344445544
Q ss_pred HHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 164 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 164 s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
+ .+....+|++++++-+.+.++.+..|+++++++|.+++|+.+....+|..+.+.||.++.+..
T Consensus 108 ~-tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 108 F-TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred h-hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 3 667788899999999999999999999999999999999999999999999999999987654
No 54
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.17 E-value=3.4e-05 Score=65.65 Aligned_cols=187 Identities=11% Similarity=0.148 Sum_probs=135.3
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK 103 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 103 (255)
..++.++.+.-+.|..+.+..+..+-.+|+++.++.+. .. .+..+..|..+.-.|-++=|.--
T Consensus 144 iPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs-~~----------------sPNF~~~Gv~mIsgALl~DA~iG 206 (367)
T KOG1582|consen 144 IPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADS-QT----------------SPNFNLIGVMMISGALLADAVIG 206 (367)
T ss_pred hhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccc-cc----------------CCCcceeeHHHHHHHHHHHHHhh
Confidence 44556677777888889999999999999999874311 11 12335689888888888888777
Q ss_pred HHHHHHHhhcCC-cchHHHHHHHHHHHHHHHHHHHhccCCCcccc--cchh-HHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025279 104 IFQAAVLKEYPD-KINLVFFSCFFGTIQCAVVSIIVERNPSAWKL--QPGI-QRTAVIYAAIVGTVIRSSIIAWCLQKKG 179 (255)
Q Consensus 104 vl~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~-~~~~ll~lgi~~s~~~~~~~~~~l~~~~ 179 (255)
.++.+..+.++. ..+..++....|.+.++......++-++.|.. ..+. .....++... .+.++...---.++.-+
T Consensus 207 NvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fG 285 (367)
T KOG1582|consen 207 NVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFG 285 (367)
T ss_pred HHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhc
Confidence 777777776553 35566777778887776665554443333322 1111 2233333333 55566666677788889
Q ss_pred ceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 180 PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 180 a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
|..++.+...---+++++++++|..++|....-|..+++.|+++..+.|
T Consensus 286 A~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 286 ALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 9999999999999999999999999999999999999999999987766
No 55
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=3.5e-06 Score=71.63 Aligned_cols=200 Identities=13% Similarity=0.063 Sum_probs=131.9
Q ss_pred eeecccchhhhhhHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHH
Q 025279 11 YQIQLSDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGL 90 (255)
Q Consensus 11 ~~~~~~~~~~~~~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 90 (255)
.+=.++.+++.+..++ .+|+|.+..-..+.++.++|-.+=+ ++. ++++.....|.+
T Consensus 133 vgRsLttvFtVlLtyv------llkqkTs~~~~~~C~lIi~GF~lGv-dqE-----------------~~~~~ls~~Gvi 188 (347)
T KOG1442|consen 133 VGRSLTTVFTVLLTYV------LLKQKTSFFALGCCLLIILGFGLGV-DQE-----------------GSTGTLSWIGVI 188 (347)
T ss_pred eccchhhhHHHHhHHh------hcccccccccceeehhheehheecc-ccc-----------------cccCccchhhhH
Confidence 3556677777665444 4566655555555555555533311 111 112334578999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHHHHHHHHHHHHHH
Q 025279 91 LLTVTCFSSATWKIFQAAVLKEYPD-KINLVFFSCFFGTIQCAVVSIIVERNPSAW---KLQPGIQRTAVIYAAIVGTVI 166 (255)
Q Consensus 91 l~l~aa~~~a~~~vl~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~lgi~~s~~ 166 (255)
++..+.++-|+..+..||......+ -...+.+..+.+.+..+|...+.+.--..+ ..+....|..+...|+++-.+
T Consensus 189 fGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~m 268 (347)
T KOG1442|consen 189 FGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAM 268 (347)
T ss_pred HHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999976544332 466788888999998888877654311111 122334677777777766655
Q ss_pred HHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccccccc
Q 025279 167 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMT 235 (255)
Q Consensus 167 ~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~~~~ 235 (255)
+|.. .+=+|-+.|.+=.+...--...=.++++.+++|.-+..-|-|-++++.|-....+-|++++++.
T Consensus 269 gyvT-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~ 336 (347)
T KOG1442|consen 269 GYVT-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA 336 (347)
T ss_pred hhee-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence 5443 3445555665555555555666678889999999999999999999999988888777665543
No 56
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.13 E-value=7.9e-05 Score=66.35 Aligned_cols=138 Identities=12% Similarity=0.089 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 025279 87 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVI 166 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~ 166 (255)
.|-.+.++-+.+-...+.+.++ +.+.|..-+++..+.-.++..+......+ ...+.......|+..+.+++ .=..
T Consensus 17 lgQ~lsl~~~~t~~~s~~l~~~---~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~-~~~~~~~~~~~~w~y~lla~-~Dv~ 91 (334)
T PF06027_consen 17 LGQVLSLCITGTGTFSSLLANK---GVNIPTFQSFFNYVLLALVYTPILLYRRG-FKKWLKVLKRPWWKYFLLAL-LDVE 91 (334)
T ss_pred HHHHHHHHHHhHHHHHHHHHhc---CccCcHHHHHHHHHHHHHHHhhhhhhccc-cccchhhcchhHHHHHHHHH-HHHH
Confidence 4445555555555555555544 22224555555555544444443332211 11111111234666666776 4558
Q ss_pred HHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279 167 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 229 (255)
Q Consensus 167 ~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~ 229 (255)
+..+...+.++++.+.+.++....-++.+++++++++++.++.+++|+++.++|+.++.....
T Consensus 92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 999999999999999999999999999999999999999999999999999999998876543
No 57
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.11 E-value=1.2e-05 Score=65.41 Aligned_cols=191 Identities=14% Similarity=0.171 Sum_probs=126.4
Q ss_pred cchhhhhhHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHH
Q 025279 16 SDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVT 95 (255)
Q Consensus 16 ~~~~~~~~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a 95 (255)
|+...+=.++++++.++.++.|....|+++.+++..|++++... +. .......|+..+..+
T Consensus 83 sai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~-DN------------------~~a~e~iGi~~AV~S 143 (290)
T KOG4314|consen 83 SAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA-DN------------------EHADEIIGIACAVGS 143 (290)
T ss_pred HHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec-cc------------------hhhhhhhhHHHHHHH
Confidence 44444446899999999999999999999999999999999522 11 113467999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHH-----HHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 025279 96 CFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAV-----VSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSI 170 (255)
Q Consensus 96 a~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~ 170 (255)
+..-|+|.++.|+...+-+ -=........+|..=+.. +.+.+. ..+.|......-|..+.....+ +.--..+
T Consensus 144 A~~aAlYKV~FK~~iGnAn-~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T-~VE~~qsFA~~PWG~l~G~A~L-~lAFN~~ 220 (290)
T KOG4314|consen 144 AFMAALYKVLFKMFIGNAN-FGDAAHFMSCLGFFNLCFISFPALILAFT-GVEHLQSFAAAPWGCLCGAAGL-SLAFNFL 220 (290)
T ss_pred HHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHHHHhhhHHHHHHh-chHHHHHHhhCCchhhhhHHHH-HHHHhhh
Confidence 9999999999999876533 122222232333322111 111111 1122211011125554333332 2223345
Q ss_pred HHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 171 IAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 171 ~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
.+.++....|-..|.-+.+..+--...+.++-+-..+.....|..+|..|.++.....
T Consensus 221 iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 221 INFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred eeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 5677788888888888888888888999987777788899999999999988876543
No 58
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.06 E-value=2.3e-05 Score=68.99 Aligned_cols=122 Identities=20% Similarity=0.163 Sum_probs=90.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHH
Q 025279 83 SNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIV 162 (255)
Q Consensus 83 ~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~ 162 (255)
.++..|..+++.++++.+...+++|+...|.+. ...-.-. -... + ..++ .|+ .|..
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~~--------~~~~---------~-l~~~-~W~----~G~~ 58 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAGS--------GGRS---------Y-LRRP-LWW----IGLL 58 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccc--------hhhH---------H-HhhH-HHH----HHHH
Confidence 357899999999999999999999998666542 1000000 0000 0 0111 222 2444
Q ss_pred HHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 163 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 163 ~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
...++..+.+.++...|++.++.+..+.-++..+++-+++||+++...++|+.+++.|..+.....
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 555667778889999999999999999999999999999999999999999999999987765433
No 59
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=98.05 E-value=2.5e-05 Score=57.49 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279 160 AIVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 160 gi~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~ 227 (255)
.+++...+|.+...++|++|...+ ++..-...+..++.++++|||+++..+++|..++++|+...+..
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 334667899999999999999988 99999999999999999999999999999999999999887653
No 60
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.98 E-value=0.00028 Score=60.72 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=106.5
Q ss_pred hhhhhhhcccCccc----hhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHH
Q 025279 29 MEKVAIRSRSSQAK----ILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKI 104 (255)
Q Consensus 29 ~e~~~~~e~~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v 104 (255)
...+.++|-.+..+ .+++++.++|+++-... +...+ ..+++.+...|.+..+++.+.|..|.+
T Consensus 89 ~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~-~~~~~------------~~~~~~~~~kgi~~Ll~stigy~~Y~~ 155 (269)
T PF06800_consen 89 IGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQ-DKKSD------------KSSSKSNMKKGILALLISTIGYWIYSV 155 (269)
T ss_pred HHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccc-ccccc------------ccccccchhhHHHHHHHHHHHHHHHHH
Confidence 34445555443333 34667777787775422 21110 001134567899999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHH-HHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceeh
Q 025279 105 FQAAVLKEYPDKINLVFFSCFFGTIQC-AVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFV 183 (255)
Q Consensus 105 l~k~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~ 183 (255)
..|. .+.+ +.....=+. .|.++. ..+..+.++...+ ...|.. +.-|+ .=.++..++..+.++.+.+..
T Consensus 156 ~~~~--~~~~-~~~~~lPqa-iGm~i~a~i~~~~~~~~~~~-----k~~~~n-il~G~-~w~ignl~~~is~~~~G~a~a 224 (269)
T PF06800_consen 156 IPKA--FHVS-GWSAFLPQA-IGMLIGAFIFNLFSKKPFFE-----KKSWKN-ILTGL-IWGIGNLFYLISAQKNGVATA 224 (269)
T ss_pred HHHh--cCCC-hhHhHHHHH-HHHHHHHHHHhhcccccccc-----cchHHh-hHHHH-HHHHHHHHHHHhHHhccchhh
Confidence 9775 3444 455544332 222222 2222222211111 111222 23344 345788889999999999999
Q ss_pred hhhhchHHHHHHHHHHHHhCCCCchh----hhhhHHHHHHhhhh
Q 025279 184 ALFKPLGTAIAVFMAVMFLGETPHLG----SLIGTVVIAFGFYA 223 (255)
Q Consensus 184 s~~~~l~Pi~a~l~~~~~lgE~~~~~----~~lG~~lI~~gv~l 223 (255)
=.+..+.++++.+.+.+++||+=+.. .++|+++++.|..+
T Consensus 225 f~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 225 FTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999987764 45788888877654
No 61
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.98 E-value=4.1e-05 Score=56.68 Aligned_cols=66 Identities=17% Similarity=0.389 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279 161 IVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 161 i~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
+++...++.++..++|+.|...+ +...-+.-+.+.+.+++++||++++.+++|..+|+.|+...+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 45677899999999999999988 8888899999999999999999999999999999999988754
No 62
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.98 E-value=0.00021 Score=62.96 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=85.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHH
Q 025279 116 KINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAV 195 (255)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~ 195 (255)
|..+++.|+....+...+.......... ....+......++ ...++..+-+.++++++...-.+.....|+..+
T Consensus 32 ~~~lt~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vm 105 (303)
T PF08449_consen 32 PLFLTFVQFAFNALFSFILLSLFKFPKS-----RKIPLKKYAILSF-LFFLASVLSNAALKYISYPTQIVFKSSKPIPVM 105 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccccCC-----CcChHHHHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHH
Confidence 5788888888888877665543331111 1111333344455 566888899999999999999999999999999
Q ss_pred HHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccccc
Q 025279 196 FMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKES 232 (255)
Q Consensus 196 l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~ 232 (255)
++++++++++.+..++++..++.+|+.+....+.+++
T Consensus 106 i~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 106 ILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred HHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 9999999999999999999999999999887654433
No 63
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.98 E-value=0.00012 Score=54.48 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279 161 IVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 161 i~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~ 225 (255)
+.+..++|.+...++|+.|...+ +...-+.-+..++.+++++||++++.+++|..+|+.|+...+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34567899999999999999988 888889999999999999999999999999999999998764
No 64
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.96 E-value=3e-05 Score=68.22 Aligned_cols=196 Identities=12% Similarity=0.163 Sum_probs=99.4
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCC-CCcccccchhhHHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ-LPVSEYSNWALGGLLLTVTCFSSATW 102 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~l~l~aa~~~a~~ 102 (255)
.+-....+..+|||++++++.|..++++|..++... ++..+... +.+ ......+...... ..+...+...+.
T Consensus 88 v~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~-~~~~~~~~-----t~~~l~~~~~~~~fl~y-~~~~~~~~~~L~ 160 (300)
T PF05653_consen 88 VFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF-APKEEPIH-----TLDELIALLSQPGFLVY-FILVLVLILILI 160 (300)
T ss_pred hhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe-CCCCCCcC-----CHHHHHHHhcCcceehh-HHHHHHHHHHHH
Confidence 455667888999999999999999999999888533 22111000 000 0000000001111 111111222222
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHHHHHH---HHHHhccCC-CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025279 103 KIFQAAVLKEYPDKINLVFFSCFFGTIQCAV---VSIIVERNP-SAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK 178 (255)
Q Consensus 103 ~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~-~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~ 178 (255)
....+|..++ + .........++|+...+. ++....... .+.....+..|..++.+ +.+......+.++++++.
T Consensus 161 ~~~~~r~g~~-~-i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~f 237 (300)
T PF05653_consen 161 FFIKPRYGRR-N-ILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVL-VVTAVLQLYYLNKALKRF 237 (300)
T ss_pred Hhhcchhccc-c-eEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 2222222222 1 122222222333322111 111111111 01111223334433333 335667788889999999
Q ss_pred Cceehhhhhc-hHHHHHHHHHHHHhCCC--Cch----hhhhhHHHHHHhhhhhhcccc
Q 025279 179 GPVFVALFKP-LGTAIAVFMAVMFLGET--PHL----GSLIGTVVIAFGFYAVIWAQG 229 (255)
Q Consensus 179 ~a~~~s~~~~-l~Pi~a~l~~~~~lgE~--~~~----~~~lG~~lI~~gv~l~~~~~~ 229 (255)
+++.+.+..+ .--..+++-|.++++|. .+. ....|+.+++.|+++....|+
T Consensus 238 d~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 238 DTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred cceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence 9998765554 45667777788899984 444 345778888999988775543
No 65
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.95 E-value=2.5e-05 Score=64.69 Aligned_cols=189 Identities=14% Similarity=0.175 Sum_probs=132.4
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK 103 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 103 (255)
..+..+|...++.|.+........+-++--+.-. +.+. +...-.......|.+|+...+++-+.|-
T Consensus 106 I~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~-w~D~-------------q~~~~~~~~lN~GY~Wm~~NclssaafV 171 (309)
T COG5070 106 ILIAYGEVLFFGGRVTSLELLSFILMVLSSVVAT-WGDQ-------------QASAFKAQILNPGYLWMFTNCLSSAAFV 171 (309)
T ss_pred ehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhc-cchh-------------hHHHHHhcccCCceEEEehhhHhHHHHH
Confidence 5566789999998877777666554443333221 1111 1001111234568999999999999999
Q ss_pred HHHHHHHh--hcCCcchHHHHHHHHHHHHHHHHHHHhccCCCc-ccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025279 104 IFQAAVLK--EYPDKINLVFFSCFFGTIQCAVVSIIVERNPSA-WKL-QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKG 179 (255)
Q Consensus 104 vl~k~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~ 179 (255)
+..|+..+ +..+ ...++|..+++.+++..+..+.+.+.+. ... .++..+.++...|+ ++..--.+-.|.++-..
T Consensus 172 L~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl-~svgiSy~saWcvrVtS 249 (309)
T COG5070 172 LIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL-CSVGISYCSAWCVRVTS 249 (309)
T ss_pred HHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH-HHhhhhhccceeEeehh
Confidence 98887644 3443 7788999999999999999887754322 111 12223456666666 66666678889999999
Q ss_pred ceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 180 PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 180 a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
.+.-+.+..+.-.-..+.|.+++||+.+...+....+-..+-.+....|
T Consensus 250 STtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavak 298 (309)
T COG5070 250 STTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK 298 (309)
T ss_pred hhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877665444444433
No 66
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.82 E-value=0.00051 Score=53.49 Aligned_cols=130 Identities=14% Similarity=0.071 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccC-CCcccccchhHHHHHHHHHHHHHHHH
Q 025279 89 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN-PSAWKLQPGIQRTAVIYAAIVGTVIR 167 (255)
Q Consensus 89 ~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~lgi~~s~~~ 167 (255)
.++.+.+.++.++-..++.++.++..+|+..+.+.+..|.+.+..+..+.++. ...... ..|+.. .-|+ .+...
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~---~p~w~~-lGG~-lG~~~ 77 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSS---VPWWAY-LGGL-LGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhcc---CChHHh-ccHH-HHHHH
Confidence 46778888888888888888888876579999999999999988777766542 222211 112221 2444 45566
Q ss_pred HHHHHHHHhccCceeh-hhhhchHHHHHHHHHHH----HhCCCCchhhhhhHHHHHHhhhh
Q 025279 168 SSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVM----FLGETPHLGSLIGTVVIAFGFYA 223 (255)
Q Consensus 168 ~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~----~lgE~~~~~~~lG~~lI~~gv~l 223 (255)
-.+..+.+++.+++.+ .....-|-+.+.+++.+ .-++++++.+++|.++++.|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 7788888999998866 66667788889999986 34568999999999999999864
No 67
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.66 E-value=0.00047 Score=49.92 Aligned_cols=58 Identities=26% Similarity=0.399 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHH
Q 025279 160 AIVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI 217 (255)
Q Consensus 160 gi~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI 217 (255)
.+.+.++++.++.+++|+.|.+.+ +...-+..+...+.+++++||++++.+++|..+|
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 334677889999999999999998 7777899999999999999999999999999876
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.58 E-value=0.00056 Score=61.10 Aligned_cols=138 Identities=14% Similarity=0.113 Sum_probs=93.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHH---HHHH-HHHHHhccCC-CcccccchhHHHHHHH
Q 025279 84 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGT---IQCA-VVSIIVERNP-SAWKLQPGIQRTAVIY 158 (255)
Q Consensus 84 ~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~---l~~~-~~~~~~~~~~-~~~~~~~~~~~~~ll~ 158 (255)
+...|.++.+++++||+.+.+=.|| .++++ .+.. |- ..+. ++.. ..+....+++ +.....+...+..-+.
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 3578999999999999999999988 46664 4443 43 2222 2111 0111111121 1122123344555556
Q ss_pred HHHHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCC---c----hhhhhhHHHHHHhhhhhhcc
Q 025279 159 AAIVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETP---H----LGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 159 lgi~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~---~----~~~~lG~~lI~~gv~l~~~~ 227 (255)
.|++ =.++...+..++|+.+.++. .+..-++-+.+.+++.+++||=. + ..-++|.++++.|+.+..+.
T Consensus 79 ~G~~-W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 79 FGAL-WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHH-HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 6664 45899999999999998876 66677899999999999999733 2 24568888999999998873
No 69
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.0045 Score=48.55 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHH
Q 025279 86 ALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTV 165 (255)
Q Consensus 86 ~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~ 165 (255)
.+..+..+++.++..+-+-++.++.+...+|.......+..|.+.+..+.++.++.+..-...+. -|+. ..-|++ ..
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~-pwW~-~~GG~l-Ga 80 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASA-PWWA-WIGGLL-GA 80 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCC-chHH-HHccch-hh
Confidence 45677888899999999988888888777789999999999999998888775443321111111 1221 122332 22
Q ss_pred HHHHHHHHHHhccCce-ehhhhhchHHHHHHHHHHHHhC----CCCchhhhhhHHHHHHhhhhhhccc
Q 025279 166 IRSSIIAWCLQKKGPV-FVALFKPLGTAIAVFMAVMFLG----ETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 166 ~~~~~~~~~l~~~~a~-~~s~~~~l~Pi~a~l~~~~~lg----E~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
+--..-....++.+++ .+...-.-|-+.+.+.+-+=+. .+++...++|.+++++|+++.+.++
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 3333445667777766 5578888899999999987444 5799999999999999966655433
No 70
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.41 E-value=0.00087 Score=57.28 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279 163 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 231 (255)
Q Consensus 163 ~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~ 231 (255)
...+...+.+.++++.+|+.-.....+..++++++++++++++++..||++..+.+.|+.+........
T Consensus 26 lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 26 LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 356778889999999999999999999999999999999999999999999999999999987765544
No 71
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.20 E-value=0.036 Score=49.64 Aligned_cols=175 Identities=18% Similarity=0.073 Sum_probs=97.6
Q ss_pred cchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH-------HHHHHHH-hh
Q 025279 41 AKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK-------IFQAAVL-KE 112 (255)
Q Consensus 41 ~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~-------vl~k~~~-~~ 112 (255)
.-.+|+++.++|+++...- +..-+ + .+.+ +...+.+...|+++++++.+.++.|+ ...+... .+
T Consensus 136 ~~~~gv~liliGi~l~s~A-g~~k~----~--~~~~-~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g 207 (345)
T PRK13499 136 MTLLGVLVALIGVAIVGRA-GQLKE----R--KMGI-KKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALG 207 (345)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhcc----c--cccc-ccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcC
Confidence 4677899999999988531 10000 0 0000 00123467799999999999999999 4433321 12
Q ss_pred cCCcchHHHHHHH---HHHHHHH-HHHHHh--c-cCCC---cccccchhHHHHH----HHHHHHHHHHHHHHHHHHHhcc
Q 025279 113 YPDKINLVFFSCF---FGTIQCA-VVSIIV--E-RNPS---AWKLQPGIQRTAV----IYAAIVGTVIRSSIIAWCLQKK 178 (255)
Q Consensus 113 ~~~~~~~~~~~~~---~~~l~~~-~~~~~~--~-~~~~---~~~~~~~~~~~~l----l~lgi~~s~~~~~~~~~~l~~~ 178 (255)
.+ +.....-++. .|.++.. .+.... . ++.. ....+. ..+..- +.-|+ .=.+++.+|.++-++.
T Consensus 208 ~~-~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~ 284 (345)
T PRK13499 208 VD-PLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAK-PLLITNVLLSALAGV-MWYLQFFFYAMGHSKL 284 (345)
T ss_pred CC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 23 2333333332 4444322 211111 1 1111 111110 011211 22233 3445677888888888
Q ss_pred Cceehh----hhhchHHHHHHHHHHHHhCCCCc------hhhhhhHHHHHHhhhhhhcc
Q 025279 179 GPVFVA----LFKPLGTAIAVFMAVMFLGETPH------LGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 179 ~a~~~s----~~~~l~Pi~a~l~~~~~lgE~~~------~~~~lG~~lI~~gv~l~~~~ 227 (255)
+..... +.+.+..+++.+++++ +||.=+ ...++|.++++.|..++...
T Consensus 285 g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 285 GAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred CCccchHHHHHhccHHHHHHHHhhhh-hhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 665443 4447888999999995 999766 56789999999998886654
No 72
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.15 E-value=0.0058 Score=52.72 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhh-chHHHHHHHHHHHHhCCCCchhhh----hhHHHHHHhhhhhh
Q 025279 151 IQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFK-PLGTAIAVFMAVMFLGETPHLGSL----IGTVVIAFGFYAVI 225 (255)
Q Consensus 151 ~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~-~l~Pi~a~l~~~~~lgE~~~~~~~----lG~~lI~~gv~l~~ 225 (255)
..+..-+..|++ =.+++...+++.++.+.+++-++. -++-+...++++++|||--+..++ ++.++++.|+++..
T Consensus 43 ~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 43 TSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 345555666664 458999999999999999997776 677777899999999997776554 36677889999988
Q ss_pred cccccccc
Q 025279 226 WAQGKESN 233 (255)
Q Consensus 226 ~~~~~~~~ 233 (255)
++++++++
T Consensus 122 ~~~~~~~~ 129 (269)
T PF06800_consen 122 YQDKKSDK 129 (269)
T ss_pred cccccccc
Confidence 77665543
No 73
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.02 E-value=0.0069 Score=45.33 Aligned_cols=109 Identities=7% Similarity=-0.043 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 025279 94 VTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAW 173 (255)
Q Consensus 94 ~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~ 173 (255)
+.+++|+.-+-+.||..+..++ ..-.. +..-.... +. ..+..+ +.+.....+...|++
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~-~~~~~-~~~~~~~~-Ll--------------~n~~y~-----ipf~lNq~GSv~f~~ 60 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEK-VKASL-QLLQEIKF-LL--------------LNPKYI-----IPFLLNQSGSVLFFL 60 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCC-ccchH-HHHHHHHH-HH--------------HhHHHH-----HHHHHHHHHHHHHHH
Confidence 4578899999999998877653 33321 32222211 10 011111 133345567778999
Q ss_pred HHhccCceehhhhh-chHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhh
Q 025279 174 CLQKKGPVFVALFK-PLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAV 224 (255)
Q Consensus 174 ~l~~~~a~~~s~~~-~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~ 224 (255)
.+++.+-+.+.... .+.=+++++.++++.+|..+...++|+++++.|+.+.
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 99999999998884 8999999999998877788889999999999998753
No 74
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.80 E-value=0.0024 Score=56.37 Aligned_cols=123 Identities=20% Similarity=0.289 Sum_probs=92.0
Q ss_pred HHHHHHHHHh--hcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025279 102 WKIFQAAVLK--EYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKG 179 (255)
Q Consensus 102 ~~vl~k~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~ 179 (255)
.++..|+..+ ..+.|..++..++..+.+.....-..-..... ...+...|..++-+|++ -.++..+-+.++++.+
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~--~~~~~~~~~~llpl~~~-~~~~~v~~n~Sl~~v~ 108 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS--KISSKLPLRTLLPLGLV-FCISHVLGNVSLSYVP 108 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC--ccccccchHHHHHHHHH-HHHHHHhcchhhhccc
Confidence 3457777777 66668888888777777666554432211111 11133457778888885 5599999999999999
Q ss_pred ceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279 180 PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 180 a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~ 227 (255)
.+..-..-.++|++.+++++++.+|+.+...+.-...++.|+.+....
T Consensus 109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~ 156 (316)
T KOG1441|consen 109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVT 156 (316)
T ss_pred hhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeec
Confidence 999999999999999999999999999998887777777777766553
No 75
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.34 E-value=0.0013 Score=49.25 Aligned_cols=54 Identities=9% Similarity=0.198 Sum_probs=42.2
Q ss_pred cceecceeeecccchhhhh-----hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279 4 ANICNYRYQIQLSDSCFCH-----GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS 57 (255)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-----~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~ 57 (255)
.++..|.++.++.+..... ..+..++.++.+|||++++++.+++++++|++++.
T Consensus 47 ~~~~~~~~a~~~~~~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~ 105 (113)
T PF13536_consen 47 VAYLLFFYALSYAPALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIA 105 (113)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 4455666677776542222 36677789999999999999999999999999996
No 76
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.27 E-value=0.0023 Score=54.00 Aligned_cols=134 Identities=8% Similarity=0.050 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 025279 88 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIR 167 (255)
Q Consensus 88 G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~ 167 (255)
..+.+++=++.|+..-....|...+ |..-+. .+.+|+++.....++.. ++ ..+...+..-+..|.+ =.++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG~---p~qQ~l-GtT~GALifaiiv~~~~-~p----~~T~~~~iv~~isG~~-Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGGK---PYQQTL-GTTLGALIFAIIVFLFV-SP----ELTLTIFIVGFISGAF-WSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCCC---hhHhhh-hccHHHHHHHHHHheee-cC----ccchhhHHHHHHhhhH-hhhh
Confidence 4677888999999888776654332 333332 33445554444333221 11 1122233333444443 3378
Q ss_pred HHHHHHHHhccCceehhhhh-chHHHHHHHHHHHHhCCCCchhhh-h---hHHHHHHhhhhhhcccccc
Q 025279 168 SSIIAWCLQKKGPVFVALFK-PLGTAIAVFMAVMFLGETPHLGSL-I---GTVVIAFGFYAVIWAQGKE 231 (255)
Q Consensus 168 ~~~~~~~l~~~~a~~~s~~~-~l~Pi~a~l~~~~~lgE~~~~~~~-l---G~~lI~~gv~l~~~~~~~~ 231 (255)
+...+++++..+.+++..+. -.+-+-+.+++++.|||=.+..++ + ..++++.|+++..++++.+
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~n 141 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNN 141 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccc
Confidence 88999999999999997765 467788899999999998887765 3 4566788998887766533
No 77
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.0022 Score=55.99 Aligned_cols=126 Identities=16% Similarity=0.167 Sum_probs=93.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHH
Q 025279 82 YSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAI 161 (255)
Q Consensus 82 ~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi 161 (255)
+.++..|..+.+.+.+.-+...++.||..+|... ...-.++....+. .+ .+.+.|.
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~------------------~~~ra~~gg~~yl--~~----~~Ww~G~ 71 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA------------------SGLRAGEGGYGYL--KE----PLWWAGM 71 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh------------------hcccccCCCcchh--hh----HHHHHHH
Confidence 4567899999999999999999998887666431 0000011111111 11 1223477
Q ss_pred HHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279 162 VGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 231 (255)
Q Consensus 162 ~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~ 231 (255)
+..+++-..-+-+....|++.++.+..+..++.++++.++++|++++.-.+|+.+.++|-.+.....+++
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e 141 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE 141 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence 7778888888888888999999999999999999999999999999999999999998866655444443
No 78
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.04 Score=48.35 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhc-hHHHHHHHHHHHHhCCC--Cch----hhhhhHHHHHHhhhh
Q 025279 151 IQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKP-LGTAIAVFMAVMFLGET--PHL----GSLIGTVVIAFGFYA 223 (255)
Q Consensus 151 ~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~-l~Pi~a~l~~~~~lgE~--~~~----~~~lG~~lI~~gv~l 223 (255)
..|..++.+.. +........+++++..+++.++.+.| +-..++++-+.++++|= .+. ....|+..++.|+++
T Consensus 225 ~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~fl 303 (335)
T KOG2922|consen 225 LTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFL 303 (335)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeE
Confidence 44665555555 66678888899999999998866655 45677788888889883 333 345788889999988
Q ss_pred hhccccc
Q 025279 224 VIWAQGK 230 (255)
Q Consensus 224 ~~~~~~~ 230 (255)
....|.+
T Consensus 304 L~~~kd~ 310 (335)
T KOG2922|consen 304 LHRTKDM 310 (335)
T ss_pred eeeeccc
Confidence 7654443
No 79
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=95.51 E-value=0.0091 Score=48.85 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279 166 IRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 231 (255)
Q Consensus 166 ~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~ 231 (255)
.+.+.|..++++++|+.++.+......|..+++|+.+|+++....++..++.+.|+.+..+..+..
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence 456788999999999999999999999999999999999999999999999999998888765543
No 80
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.39 E-value=0.87 Score=40.63 Aligned_cols=138 Identities=12% Similarity=0.071 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC---cchHHHHHHHHHHHHHHHHHHHhc----c-C---CCcccccchhHHHHHH
Q 025279 89 GLLLTVTCFSSATWKIFQAAVLKEYPD---KINLVFFSCFFGTIQCAVVSIIVE----R-N---PSAWKLQPGIQRTAVI 157 (255)
Q Consensus 89 ~~l~l~aa~~~a~~~vl~k~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~----~-~---~~~~~~~~~~~~~~ll 157 (255)
.+.++...+-++......|...++..+ |.+.++..=++-.+++....+.-. + . ++.+....+.+...+.
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~ 96 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS 96 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence 444555566667777766665443321 344444444445555544444332 1 1 1111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279 158 YAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 158 ~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~ 227 (255)
+=.+...+..-+++.++++.+|+.-.+...+-.+.++++..+++++++++.||....+.+.|+.++...
T Consensus 97 -vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 97 -VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred -HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 111234556668999999999999999999999999999999999999999999999999999998843
No 81
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.16 E-value=0.15 Score=45.24 Aligned_cols=140 Identities=13% Similarity=0.114 Sum_probs=88.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHH-HHHHHHHHHHHHHHH-HHhccCCCc-ccccchhHHHHHHHHH
Q 025279 84 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLV-FFSCFFGTIQCAVVS-IIVERNPSA-WKLQPGIQRTAVIYAA 160 (255)
Q Consensus 84 ~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~ll~lg 160 (255)
.-..|+++..+++++.+.+++=.||. |+++ .+.. ..+.+++.++.-.+. +..-++..+ +...+...+....+.|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 45789999999999999999998885 5554 3332 224455555443332 222222211 2222223455555556
Q ss_pred HHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCC-------CCchhhhhhHHHHHHhhhhhhcc
Q 025279 161 IVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGE-------TPHLGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 161 i~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE-------~~~~~~~lG~~lI~~gv~l~~~~ 227 (255)
+ -=+++-..|-.++|+.+.+.. ++..-+.-+++.++--++.|+ +-....++|..+.+.|+.+.-+.
T Consensus 81 ~-lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 81 V-LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred H-HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 6 345777888999999987744 666666677777775555443 22346789999999999998764
No 82
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.08 E-value=0.025 Score=50.57 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279 164 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 231 (255)
Q Consensus 164 s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~ 231 (255)
=.++...++.+++++.++...++....-+|+..++.++-+|++++...++..+-++|+++++..+.+.
T Consensus 169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 44688899999999999999999999999999999999999999999999999999999999876554
No 83
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.04 E-value=0.052 Score=46.54 Aligned_cols=132 Identities=10% Similarity=0.031 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 025279 88 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIR 167 (255)
Q Consensus 88 G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~ 167 (255)
|.+..++|+++++...+=.||.... + ++....+++....+........ .+.+..+ +...+ -|. -=..+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g-D-g~~fQw~~~~~i~~~g~~v~~~-~~~p~f~----p~aml----gG~-lW~~g 68 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG-D-GFFFQWVMCSGIFLVGLVVNLI-LGFPPFY----PWAML----GGA-LWATG 68 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC-C-cHHHHHHHHHHHHHHHHHHHHh-cCCCcce----eHHHh----hhh-hhhcC
Confidence 4567888999999999988876443 3 4555444443333333333332 2222111 11111 111 11123
Q ss_pred HHHHHHHHhccCceeh-hhhhchHHHHHHHHHHH-HhCCCC-----chhhhhhHHHHHHhhhhhhcccccc
Q 025279 168 SSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVM-FLGETP-----HLGSLIGTVVIAFGFYAVIWAQGKE 231 (255)
Q Consensus 168 ~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~-~lgE~~-----~~~~~lG~~lI~~gv~l~~~~~~~~ 231 (255)
..+-.-.+|.++-... .+....+-+.+-..+-+ +||++. +++.++|.+++++|..+...-|.++
T Consensus 69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 3333344444444332 23333455555555533 455533 4578899999999888776544433
No 84
>PRK02237 hypothetical protein; Provisional
Probab=94.21 E-value=0.32 Score=35.85 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=41.5
Q ss_pred ceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 180 PVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 180 a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
..++ +.+.-...+.+.+++|.+-|++|+...++|..+.+.|+.++.+.+
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 3444 667777788899999999999999999999999999998876644
No 85
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=93.62 E-value=0.27 Score=42.99 Aligned_cols=125 Identities=10% Similarity=0.114 Sum_probs=86.6
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 025279 103 KIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSA--WKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGP 180 (255)
Q Consensus 103 ~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a 180 (255)
+.+.+...++++-|+.++..+...=.+.....-...+...+. ....+...+-.+.-.++ ++++=-.+-+|++++++.
T Consensus 32 tf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yVtl 110 (349)
T KOG1443|consen 32 TFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYVTL 110 (349)
T ss_pred HHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhh-hhhcccccccceeeeeee
Confidence 456666666676678887777665544443332222221111 11111112222333444 677778899999999999
Q ss_pred eehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 181 VFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 181 ~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
+.-.......++|..+++.+|-=|+++|....=..+|..|+++..++.
T Consensus 111 SlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 111 SLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred eeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 999999999999999999999999999999999999999999887644
No 86
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=93.58 E-value=0.027 Score=41.82 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=37.7
Q ss_pred eecceeeecccchhhhh------hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279 6 ICNYRYQIQLSDSCFCH------GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS 57 (255)
Q Consensus 6 ~~~~~~~~~~~~~~~~~------~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~ 57 (255)
+.++.+++++.++.... ..+....+.+.+|||+++++++|+++.+.|++++.
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 68 YLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33444555554443333 25566688899999999999999999999998873
No 87
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=93.44 E-value=1.6 Score=37.45 Aligned_cols=103 Identities=9% Similarity=-0.014 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 025279 88 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIR 167 (255)
Q Consensus 88 G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~ 167 (255)
-+.+.+.++++--...-+.|..-.... +.-.+.++..+++++++.+.=... ..+ +..+|..++..|+ +.+..
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~RPwr---~r~---~~~~~~~~~~yGv-sLg~M 84 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVG-AAGVTALRLAIAALILLALFRPWR---RRL---SKPQRLALLAYGV-SLGGM 84 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccC-hhhHHHHHHHHHHHHHHHHhhHHH---hcc---ChhhhHHHHHHHH-HHHHH
Confidence 578888899988888888888888887 688899999999988876552111 111 2346888888888 78889
Q ss_pred HHHHHHHHhccCceehhhhhchHHHHHHHHH
Q 025279 168 SSIIAWCLQKKGPVFVALFKPLGTAIAVFMA 198 (255)
Q Consensus 168 ~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~ 198 (255)
+.+++.+++++|-..+-.+.++.|+.-.+++
T Consensus 85 Nl~FY~si~riPlGiAVAiEF~GPL~vA~~~ 115 (292)
T COG5006 85 NLLFYLSIERIPLGIAVAIEFTGPLAVALLS 115 (292)
T ss_pred HHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence 9999999999999999999999998766543
No 88
>COG2510 Predicted membrane protein [Function unknown]
Probab=93.19 E-value=0.016 Score=44.10 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=27.5
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS 57 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~ 57 (255)
++..++..++++||++..+++|+++..+|++++.
T Consensus 105 vl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 105 VLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 3444567777888888889999999999999874
No 89
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=93.09 E-value=0.029 Score=41.92 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=30.2
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS 57 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~ 57 (255)
.+......+.++||++++|++|+.+.++|++++.
T Consensus 75 v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 75 VWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5566788899999999999999999999999874
No 90
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.91 E-value=3 Score=36.80 Aligned_cols=123 Identities=17% Similarity=0.254 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchHHH--HHHHHHHHHHHHHHHHhccCCCcccccchhHHH--HHHHHHHHHHHHHHHHH
Q 025279 96 CFSSATWKIFQAAVLKEYPDKINLVF--FSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRT--AVIYAAIVGTVIRSSII 171 (255)
Q Consensus 96 a~~~a~~~vl~k~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ll~lgi~~s~~~~~~~ 171 (255)
+++--+-++..|.+..+++-|..+.. .|.+...+.+...-...--+.+.........|. .+++.+-+-++
T Consensus 21 ~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~------ 94 (314)
T KOG1444|consen 21 CLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTG------ 94 (314)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHc------
Confidence 33344445666776666655555554 888887777665543211112212121222232 34444443333
Q ss_pred HHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhh
Q 025279 172 AWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAV 224 (255)
Q Consensus 172 ~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~ 224 (255)
.+++|+.+.....++..+.|+...+....++|-+++...+.....+.+|....
T Consensus 95 ~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~ 147 (314)
T KOG1444|consen 95 SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA 147 (314)
T ss_pred cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence 36789999999999999999999999999999999999999999888776554
No 91
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=91.23 E-value=0.16 Score=44.29 Aligned_cols=130 Identities=9% Similarity=0.063 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccC--------CC---cccccchhHHHHHHHHH
Q 025279 92 LTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN--------PS---AWKLQPGIQRTAVIYAA 160 (255)
Q Consensus 92 ~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~---~~~~~~~~~~~~ll~lg 160 (255)
|+++.+||+.+-..+|...++... ...+.|-+.++.+....+..+.-++ +. +.....+..+...+.-|
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR~-~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGRL-PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCCc-cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 356889999999999888776542 2335566655555544333222111 11 11111112233333444
Q ss_pred HHHHHHHHHHHHHHHhccCceehhhh-hchHHHHHHHHHHHHhCCCCc--hhhhhhHHHHHHhhhhh
Q 025279 161 IVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPH--LGSLIGTVVIAFGFYAV 224 (255)
Q Consensus 161 i~~s~~~~~~~~~~l~~~~a~~~s~~-~~l~Pi~a~l~~~~~lgE~~~--~~~~lG~~lI~~gv~l~ 224 (255)
++ --++..+..+++...+-+.+-++ ..+..+.++.+-|+ ++.+.+ ...+.|..++++++++-
T Consensus 80 vv-fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lg 144 (336)
T PF07168_consen 80 VV-FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILG 144 (336)
T ss_pred Hh-hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHH
Confidence 43 33677777777777765544222 33444557777775 566665 35567888877777664
No 92
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=91.02 E-value=0.25 Score=36.20 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279 194 AVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 194 a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~ 225 (255)
-+.+++++++|+++|.+..|..+++++++.+.
T Consensus 76 F~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 76 FAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred eHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 35677889999999999999999999987653
No 93
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=90.90 E-value=1.3 Score=32.53 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=41.9
Q ss_pred Cceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 179 GPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 179 ~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
...++ +.+.-.-.+.+.++++.+-|++|+...++|..+.+.|+.++.+.+
T Consensus 55 ~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 55 AFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred cchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 33344 666677778899999999999999999999999999999887654
No 94
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.46 E-value=0.76 Score=38.91 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hcC--C--------cchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHH
Q 025279 92 LTVTCFSSATWKIFQAAVLK-EYP--D--------KINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAA 160 (255)
Q Consensus 92 ~l~aa~~~a~~~vl~k~~~~-~~~--~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg 160 (255)
+..--+||=.|-+.+.|..+ ++. . ....++.++....+..=++..+... ...+. .+ .+.. . ..
T Consensus 18 a~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~--~~~D~-t~-~~~Y-a-Ac 91 (337)
T KOG1580|consen 18 AGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKK--TEIDN-TP-TKMY-A-AC 91 (337)
T ss_pred ecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccc--ccccC-Cc-chHH-H-HH
Confidence 33445688888888888754 232 1 1233344444444433222222111 11111 11 1221 1 22
Q ss_pred HHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279 161 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK 230 (255)
Q Consensus 161 i~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~ 230 (255)
..+..++...-+.++|..+=-+.-+--..-|+=.+++|+.+.+.+.+|..+.-..+|+.|+.+..++++|
T Consensus 92 s~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 92 SASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred HHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 2356678888899999998666667788899999999999999999999999999999999998876554
No 95
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.43 E-value=0.049 Score=46.15 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=86.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHH
Q 025279 83 SNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIV 162 (255)
Q Consensus 83 ~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~ 162 (255)
++.-.|....+.+.+.|-.|-++.+...-+--+.+.-....+..+++++... ..+. ..+...+.-+.-|+
T Consensus 148 ~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~~----~~~~-----~~~K~t~~nii~G~- 217 (288)
T COG4975 148 SNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGFF----KMEK-----RFNKYTWLNIIPGL- 217 (288)
T ss_pred HhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhhc----cccc-----chHHHHHHHHhhHH-
Confidence 4466899999999999999999987653221111222233334444333221 1111 11222222233444
Q ss_pred HHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhh----hhhHHHHHHhhhhhh
Q 025279 163 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGS----LIGTVVIAFGFYAVI 225 (255)
Q Consensus 163 ~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~----~lG~~lI~~gv~l~~ 225 (255)
.=+.+...+..+.++.+.++.=.+..+..+.+.+=++++++|+=|..+ ++|.++++.|..+..
T Consensus 218 ~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 218 IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 344788889999999998888888889999999999999999988755 467888887776644
No 96
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.32 E-value=0.41 Score=41.34 Aligned_cols=112 Identities=18% Similarity=0.309 Sum_probs=79.7
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhc
Q 025279 113 YPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQP----GIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKP 188 (255)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~ 188 (255)
.+.|...+.++++....++..+......-+..+..+. ......++=+.+ .-..+-..-++.+++.+.+.--+-..
T Consensus 58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsv-Vfi~mI~fnnlcL~yVgVaFYyvgRs 136 (347)
T KOG1442|consen 58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSV-VFILMISFNNLCLKYVGVAFYYVGRS 136 (347)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhh-eeeeehhccceehhhcceEEEEeccc
Confidence 3447899999999998888887765433221111111 011112222222 22244556788999999999889999
Q ss_pred hHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279 189 LGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 189 l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~ 225 (255)
+..+|.+++.+++++++-+.....+|.+|+.|..+-.
T Consensus 137 LttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv 173 (347)
T KOG1442|consen 137 LTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV 173 (347)
T ss_pred hhhhHHHHhHHhhcccccccccceeehhheehheecc
Confidence 9999999999999999999999999999999987743
No 97
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.17 E-value=0.85 Score=32.99 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279 193 IAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 193 ~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
+-+.++++.++|++.|.++.|..+++.|++++.+
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 3456889999999999999999999999988653
No 98
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=86.26 E-value=32 Score=32.85 Aligned_cols=39 Identities=8% Similarity=-0.088 Sum_probs=19.4
Q ss_pred hhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhh
Q 025279 185 LFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA 223 (255)
Q Consensus 185 ~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l 223 (255)
......|+-+.++|.+.-.-.++....++++.++.+..+
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 344456777788887643333333333444433333333
No 99
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=86.19 E-value=0.19 Score=38.08 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS 57 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~ 57 (255)
+.....+.+.++|++++.+++|+.+.++|++.+-
T Consensus 69 v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 69 LFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 4456678889999999999999999999998873
No 100
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=85.34 E-value=0.23 Score=36.70 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=29.3
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhh
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIV 56 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li 56 (255)
+...+.+.+.++|+.+..|++|+.+.++|++.+
T Consensus 69 v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 69 VGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 445667899999999999999999999999987
No 101
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=84.78 E-value=2 Score=37.36 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279 163 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 163 ~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~ 227 (255)
+-..+-.+++.++..+.++.-....--..+|..+++.-+++.+++..+|+|...+.+|+.++...
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 44455566777777777877777788889999999999999999999999999999999887654
No 102
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=83.63 E-value=0.31 Score=36.34 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=29.7
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS 57 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~ 57 (255)
+.....+++.++|++++.+++|+.+.++|++.+-
T Consensus 69 v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3445678899999999999999999999999983
No 103
>PRK11431 multidrug efflux system protein; Provisional
Probab=82.76 E-value=0.42 Score=35.34 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=29.1
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhh
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIV 56 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li 56 (255)
+.....+.+.++|++++.+++|+.+.+.|++.+
T Consensus 68 v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 68 VGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 445567889999999999999999999999987
No 104
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=81.88 E-value=0.47 Score=35.33 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=28.6
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhh
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIV 56 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li 56 (255)
+.....+.+.++|++++.|++|+.+.+.|++.+
T Consensus 74 v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 74 AATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 344557888999999999999999999999886
No 105
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=77.78 E-value=0.6 Score=35.81 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=23.4
Q ss_pred hhhcccCccchhhhHhhhhhhhhhh
Q 025279 33 AIRSRSSQAKILGTVVSIAGAFIVS 57 (255)
Q Consensus 33 ~~~e~~~~~~~~g~~l~~~Gv~li~ 57 (255)
.++|++++.+++|+++.++|++++.
T Consensus 97 ~~~E~ls~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 97 WFNETFSLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999985
No 106
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=77.64 E-value=4.8 Score=29.64 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=44.2
Q ss_pred HHHHHHHHHhccCceehhhhh-chHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhh
Q 025279 167 RSSIIAWCLQKKGPVFVALFK-PLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAV 224 (255)
Q Consensus 167 ~~~~~~~~l~~~~a~~~s~~~-~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~ 224 (255)
+..+|++-+++.+-+.+..+. .+.-.+..+.+...-.|...-..++|..++++|+++.
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 456788889999988776554 4567778888887544455667889999999998874
No 107
>PRK10489 enterobactin exporter EntS; Provisional
Probab=77.10 E-value=56 Score=29.43 Aligned_cols=38 Identities=13% Similarity=0.007 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhCCC-CchhhhhhHHHHHHhhhhhhcc
Q 025279 190 GTAIAVFMAVMFLGET-PHLGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 190 ~Pi~a~l~~~~~lgE~-~~~~~~lG~~lI~~gv~l~~~~ 227 (255)
.++-..+.+++.-.-. .....+.|+...+.++.+....
T Consensus 361 ~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T PRK10489 361 DAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL 399 (417)
T ss_pred HhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence 4444555555432111 2223345555555566554543
No 108
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=75.93 E-value=0.98 Score=34.93 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=33.6
Q ss_pred eecccchhhhhh------HHHHhhhhhhhhcccCccchhhhHhhhhhhhh
Q 025279 12 QIQLSDSCFCHG------QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFI 55 (255)
Q Consensus 12 ~~~~~~~~~~~~------a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~l 55 (255)
.+..++|.+... ........+.++|+++..+++|++++++|.++
T Consensus 101 ~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 101 LIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 344555555443 55666788899999999999999999999865
No 109
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=75.34 E-value=13 Score=27.23 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=39.3
Q ss_pred hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 184 ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 184 s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
+.+.-...+.+.++.+++-|.+|+.+.++|..+-+.|+.++...+
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 667777888899999999999999999999999999988877654
No 110
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=74.46 E-value=41 Score=29.75 Aligned_cols=110 Identities=10% Similarity=-0.004 Sum_probs=74.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHH
Q 025279 116 KINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAV 195 (255)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~ 195 (255)
+....+.+-+.+.++.......... +.+ ...-|...-+.++ ...++-.+-+.++++.+=-.-.+--..--+-.+
T Consensus 51 ~~fL~~~q~l~~~~~s~~~l~~~k~---~~~--~~apl~~y~~is~-tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm 124 (327)
T KOG1581|consen 51 SLFLVFCQRLVALLVSYAMLKWWKK---ELS--GVAPLYKYSLISF-TNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM 124 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccc---cCC--CCCchhHHhHHHH-HhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence 5666666766666655333221111 111 1122555555666 566888899999999874444455555556668
Q ss_pred HHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279 196 FMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 231 (255)
Q Consensus 196 l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~ 231 (255)
+++.++.+.+.++..++=+.+|-+|+.+....++..
T Consensus 125 lmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 125 LMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 899999999999999999999999999887766544
No 111
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=74.40 E-value=4 Score=33.87 Aligned_cols=46 Identities=17% Similarity=0.400 Sum_probs=32.8
Q ss_pred ceehhhhhchHHHHHHHHHHHHhCCCCc-hhhhhhHHH-HHHhhhhhh
Q 025279 180 PVFVALFKPLGTAIAVFMAVMFLGETPH-LGSLIGTVV-IAFGFYAVI 225 (255)
Q Consensus 180 a~~~s~~~~l~Pi~a~l~~~~~lgE~~~-~~~~lG~~l-I~~gv~l~~ 225 (255)
+...+.+..+.|..+..++-.+-+-... +.+++|+++ +..|..+..
T Consensus 33 ~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 33 NLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 4456777788999999999876655445 567877655 567887764
No 112
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=72.45 E-value=4.1 Score=31.75 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=19.9
Q ss_pred hccCceehhhhhchHHHHHHHHHHHH
Q 025279 176 QKKGPVFVALFKPLGTAIAVFMAVMF 201 (255)
Q Consensus 176 ~~~~a~~~s~~~~l~Pi~a~l~~~~~ 201 (255)
..-...+.+.+.|+.|+++.+++.+.
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677888999999988887765
No 113
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=70.73 E-value=70 Score=27.65 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 025279 95 TCFSSATWKIFQAAVLKEYP 114 (255)
Q Consensus 95 aa~~~a~~~vl~k~~~~~~~ 114 (255)
..+.+.+......+..+|+.
T Consensus 39 ~~~~~~~~~~~~g~l~dr~g 58 (379)
T TIGR00881 39 FSIAYGISKFVMGSVSDRSN 58 (379)
T ss_pred HHHHHHhhhhhhhHHHHhhC
Confidence 34444555555555555554
No 114
>PRK11010 ampG muropeptide transporter; Validated
Probab=68.66 E-value=1e+02 Score=28.80 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=22.9
Q ss_pred HhccCceehhhhhchHHHHHHH----HHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279 175 LQKKGPVFVALFKPLGTAIAVF----MAVMFLGETPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 175 l~~~~a~~~s~~~~l~Pi~a~l----~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
-++.+++..+..+....+-..+ .+++.-.--.+....+..++.+.|+++..+
T Consensus 346 ~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 346 NKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555544333222 233321111233344555555666655543
No 115
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=67.25 E-value=96 Score=27.91 Aligned_cols=179 Identities=16% Similarity=0.089 Sum_probs=99.2
Q ss_pred cccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH-----
Q 025279 36 SRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVL----- 110 (255)
Q Consensus 36 e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~----- 110 (255)
++-...-.+|++++++|+++.. ..|..-+ ++.+ . ...+.+...|.+.++++.+..|.+++-.....
T Consensus 131 ~~~g~~vL~Gv~v~LiGIai~g-~AG~~Ke----~~~~---~-~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~ 201 (344)
T PF06379_consen 131 TPSGQIVLLGVAVCLIGIAICG-KAGSMKE----KELG---E-EAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEA 201 (344)
T ss_pred CCCchhhhhHHHHHHHHHHHHh-HHHHhhh----hhhc---c-chhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 3344567889999999999984 2111000 0111 0 11234567899999999999998887543211
Q ss_pred --hh-cCCcchH----HHHHHHHHHHHHHHHHHHh---ccCCC---cccccch---hHHHHHHHHHHHHHHHHHHHHHHH
Q 025279 111 --KE-YPDKINL----VFFSCFFGTIQCAVVSIIV---ERNPS---AWKLQPG---IQRTAVIYAAIVGTVIRSSIIAWC 174 (255)
Q Consensus 111 --~~-~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~~~---~~~~~~~---~~~~~ll~lgi~~s~~~~~~~~~~ 174 (255)
+. .+ |+.. ....+.-|.+.-+....+. .++.. ++....+ .....-...|+ -=..++.+|.++
T Consensus 202 a~a~G~~-~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~-lWy~qfffYg~G 279 (344)
T PF06379_consen 202 AVAAGVN-PLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGV-LWYSQFFFYGMG 279 (344)
T ss_pred HHHcCCC-cHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 00 11 1211 1112222444444444332 12221 1211111 12222222333 233567777788
Q ss_pred HhccCce----ehhhhhchHHHHHHHHHHHHhCC------CCchhhhhhHHHHHHhhhhhhc
Q 025279 175 LQKKGPV----FVALFKPLGTAIAVFMAVMFLGE------TPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 175 l~~~~a~----~~s~~~~l~Pi~a~l~~~~~lgE------~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
-.++++. --.+.+.+..+++-+++++ ++| +.-...++|+++++.++.++-+
T Consensus 280 ~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 280 ESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 7887744 3367788889999999975 688 3345567888888888877654
No 116
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=67.11 E-value=31 Score=32.33 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=32.0
Q ss_pred ehhhhhchHHHHHHHHHHHHhCC-----CCchhhhhhHHHHHHhhhhhhccc
Q 025279 182 FVALFKPLGTAIAVFMAVMFLGE-----TPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 182 ~~s~~~~l~Pi~a~l~~~~~lgE-----~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
...++..+.-+.=.++.++=-++ .++..|++...++++|+++..+.+
T Consensus 225 lf~lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 225 LFGFYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred HHHHHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHHHHhh
Confidence 34666666666666666542222 278899999999999987766543
No 117
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=66.76 E-value=35 Score=27.23 Aligned_cols=86 Identities=10% Similarity=0.135 Sum_probs=56.3
Q ss_pred hhhhhhhcccCccchhhhHh-------hhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 025279 29 MEKVAIRSRSSQAKILGTVV-------SIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSAT 101 (255)
Q Consensus 29 ~e~~~~~e~~~~~~~~g~~l-------~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~ 101 (255)
.|-...|..|+..+.+|+.+ ++.|++++.... ..+.......++.+++.+++
T Consensus 88 ~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~---------------------~~~f~qsv~~gf~a~lGfsl 146 (193)
T COG4657 88 TEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINE---------------------GHNFLQSVVYGFGAALGFSL 146 (193)
T ss_pred HHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhh---------------------hhhHHHHHHHHhhhHhhHHH
Confidence 46666667788888888875 567777774221 12356677788888888888
Q ss_pred HHHHHHHHHh-----hcCCcchHHHHHHHHHHHHHHHHH
Q 025279 102 WKIFQAAVLK-----EYPDKINLVFFSCFFGTIQCAVVS 135 (255)
Q Consensus 102 ~~vl~k~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~ 135 (255)
..++..-..+ +.|.|..-+.+.++.++++...+.
T Consensus 147 vmvlfA~iRER~~~advP~~frG~~ialitagLmSlaFm 185 (193)
T COG4657 147 VMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLAFM 185 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHc
Confidence 7776554433 345566666666666666655543
No 118
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=66.20 E-value=73 Score=29.39 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---CceehhhhhchHHHHHHHHHHHHhCC
Q 025279 155 AVIYAAIVGTVIRSSIIAWCLQKK---GPVFVALFKPLGTAIAVFMAVMFLGE 204 (255)
Q Consensus 155 ~ll~lgi~~s~~~~~~~~~~l~~~---~a~~~s~~~~l~Pi~a~l~~~~~lgE 204 (255)
.-+.+|++++.+.+....+..+|. ++..+-..-..-=+++.+..-++-.+
T Consensus 281 ~A~viG~iag~~~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 333 (403)
T TIGR00836 281 GAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAP 333 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhhhhHHHHHHHHHHhccc
Confidence 345567777777776665555554 34455444444446666666555443
No 119
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=65.13 E-value=9.7 Score=24.08 Aligned_cols=18 Identities=6% Similarity=-0.062 Sum_probs=10.5
Q ss_pred HHHHhhhhhhcccccccc
Q 025279 216 VIAFGFYAVIWAQGKESN 233 (255)
Q Consensus 216 lI~~gv~l~~~~~~~~~~ 233 (255)
++++|+.+.+..|++..|
T Consensus 13 ~~lLg~~I~~~~K~ygYk 30 (50)
T PF12606_consen 13 MGLLGLSICTTLKAYGYK 30 (50)
T ss_pred HHHHHHHHHHHhhccccc
Confidence 345677776666655443
No 120
>PRK11469 hypothetical protein; Provisional
Probab=64.95 E-value=4.9 Score=32.87 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=33.4
Q ss_pred ehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHH-HHhhhhhh
Q 025279 182 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI-AFGFYAVI 225 (255)
Q Consensus 182 ~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI-~~gv~l~~ 225 (255)
..+.++.+.|..+...+-.+-+-...+.+|+|+.+. ..|..++.
T Consensus 42 ~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 42 IFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677889999999998876666777889887664 57887765
No 121
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=64.13 E-value=1e+02 Score=27.55 Aligned_cols=16 Identities=6% Similarity=-0.164 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 025279 159 AAIVGTVIRSSIIAWC 174 (255)
Q Consensus 159 lgi~~s~~~~~~~~~~ 174 (255)
.+.+...+++.+....
T Consensus 68 ~~~~~~~~~~~~~~~~ 83 (385)
T PF03547_consen 68 FAFIIFILGLLLGFLL 83 (385)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 122
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=62.07 E-value=9.2 Score=33.31 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=52.6
Q ss_pred HHHHHHHHhcc-CceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccccccc
Q 025279 168 SSIIAWCLQKK-GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNM 234 (255)
Q Consensus 168 ~~~~~~~l~~~-~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~~~ 234 (255)
..+-+++++.- +-..=-.+..-.++..++++|++.|.+-+..|+....++-.|+++....+.++-+.
T Consensus 78 nv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 78 NVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 34556666652 33344677788899999999999999999999999999999999988776655444
No 123
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=61.81 E-value=1.7 Score=37.29 Aligned_cols=107 Identities=12% Similarity=0.146 Sum_probs=75.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHH
Q 025279 113 YPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTA 192 (255)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi 192 (255)
.+.|..-++.....=+++..+...+..+. -...|-.-+.+++ .-+=+..+...|.|+++-+.+.++-.-..+
T Consensus 45 iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~-------~~~~~~hYilla~-~DVEaNy~vV~AyQyTsmtSi~lLDcwaip 116 (336)
T KOG2766|consen 45 INAPTSQTFLNYVLLALVYGPIMLFRRKY-------IKAKWRHYILLAF-VDVEANYFVVKAYQYTSMTSIMLLDCWAIP 116 (336)
T ss_pred CCCccHHHHHHHHHHHHHHhhHHHhhhHH-------HHHHHHHhhheeE-EeecccEEEeeehhhcchHHHHHHHHhhhH
Confidence 33366666776666666666655432210 1122444444444 334456666788899888888888888888
Q ss_pred HHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279 193 IAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 193 ~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~ 227 (255)
...+++|+|++-+-.++++.|.++-+.|+.++...
T Consensus 117 ~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 117 CVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred HHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe
Confidence 99999999999999999999999988998887654
No 124
>PRK02237 hypothetical protein; Provisional
Probab=61.68 E-value=7 Score=28.89 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=26.7
Q ss_pred HhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279 27 TGMEKVAIRSRSSQAKILGTVVSIAGAFIVS 57 (255)
Q Consensus 27 ~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~ 57 (255)
++-.+..-++||++.+++|..++++|+.+|.
T Consensus 74 l~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 74 LLWLWVVDGVRPDRWDWIGAAICLVGMAVIM 104 (109)
T ss_pred HHHHHHhcCcCCChhHHHhHHHHHHhHHHhe
Confidence 3456777889999999999999999998874
No 125
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=60.88 E-value=6.6 Score=28.94 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=27.4
Q ss_pred HHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279 26 DTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS 57 (255)
Q Consensus 26 ~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~ 57 (255)
.++-.+..-++||++.+++|..++++|+.+|.
T Consensus 71 Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 71 SLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred HHHHHhhhcCcCCChHHHHhHHHHHHhHHheE
Confidence 34456777889999999999999999999984
No 126
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=60.83 E-value=93 Score=25.56 Aligned_cols=34 Identities=6% Similarity=0.115 Sum_probs=22.5
Q ss_pred HHHHHHHhCCCCchhhhhhHHHHH--Hhhhhhhccc
Q 025279 195 VFMAVMFLGETPHLGSLIGTVVIA--FGFYAVIWAQ 228 (255)
Q Consensus 195 ~l~~~~~lgE~~~~~~~lG~~lI~--~gv~l~~~~~ 228 (255)
-.+|..++++..=+..++|..+.+ .|.+...+++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~~ 168 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARRE 168 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 445777778877788888877754 5655555443
No 127
>COG1971 Predicted membrane protein [Function unknown]
Probab=60.05 E-value=8.1 Score=31.63 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=33.2
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHH-HHHhhhhhhc
Q 025279 183 VALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVV-IAFGFYAVIW 226 (255)
Q Consensus 183 ~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~l-I~~gv~l~~~ 226 (255)
.+.+..+.|+.+...+.++=+-.-.+.+|+|.++ +..|+.++..
T Consensus 43 fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e 87 (190)
T COG1971 43 FGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIE 87 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999887656667888888665 5689887653
No 128
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=59.83 E-value=1.2e+02 Score=28.32 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=48.7
Q ss_pred ccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025279 37 RSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEY--SNWALGGLLLTVTCFSSATWKIFQAAVLKEYP 114 (255)
Q Consensus 37 ~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~ 114 (255)
|.++.-.+++.++-++-.++ ++.....- +.. .++. +...+|++... -.+.|++...+.....++.+
T Consensus 25 ~~r~qif~~~fiGYa~fYl~--RknF~~a~---p~l------~e~~~lsk~~lG~i~s~-f~i~YG~sKf~~G~~sDr~n 92 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLT--RKNFNLAM---PAL------IEDGGLSKTQLGILGSA-FSITYGVSKFVMGVLSDRSN 92 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhHhhcc---HHH------HHhcCCCHHHHHHHHHH-HHHHHHHHHHHhhhhcccCC
Confidence 44555667888887777765 33322210 000 0011 11223433332 34678888888877777766
Q ss_pred CcchHHHHHHHHHHHHHHHHHH
Q 025279 115 DKINLVFFSCFFGTIQCAVVSI 136 (255)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~ 136 (255)
|-.++....+.++++.+.+..
T Consensus 93 -pr~fm~~gLilsai~nil~Gf 113 (448)
T COG2271 93 -PRYFMAFGLILSAIVNILFGF 113 (448)
T ss_pred -CceeehHHHHHHHHHHHHHhh
Confidence 577777777777777766553
No 129
>PRK15049 L-asparagine permease; Provisional
Probab=58.78 E-value=1.6e+02 Score=27.70 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=7.2
Q ss_pred ccCCCCCccCCcCCCC
Q 025279 234 MTTGNVGSLESLNQKI 249 (255)
Q Consensus 234 ~~~~~~~~~~~~~~~~ 249 (255)
+.++++.|+|++.||.
T Consensus 476 ~~~~~~~~~~~~~~~~ 491 (499)
T PRK15049 476 HSTAPVVEEDEEKQEI 491 (499)
T ss_pred cCCCCcccccccccce
Confidence 3444444455444443
No 130
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=58.11 E-value=1.5e+02 Score=27.26 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=49.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHH------HhCCCCchhhhhhHHHHHHhhhhhh
Q 025279 153 RTAVIYAAIV-GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVM------FLGETPHLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 153 ~~~ll~lgi~-~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~------~lgE~~~~~~~lG~~lI~~gv~l~~ 225 (255)
+++.+.+|+. +..+...+.....|.-+|.+++-+.-+.==++.+++-+ ++++..+.++.....+++..+.+..
T Consensus 300 ~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 300 ILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred HHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 3334555554 56678888999999999998877776666566655543 4566677777766666666555543
No 131
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=55.68 E-value=15 Score=27.83 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=15.7
Q ss_pred HHHhCCCCchhhh----hhHHHHHHhhhhhh
Q 025279 199 VMFLGETPHLGSL----IGTVVIAFGFYAVI 225 (255)
Q Consensus 199 ~~~lgE~~~~~~~----lG~~lI~~gv~l~~ 225 (255)
|+|--|-.+.+.+ +.++++++|+++..
T Consensus 25 W~fR~ED~tpWNysiL~Ls~vvlvi~~~LLg 55 (125)
T PF15048_consen 25 WFFRVEDATPWNYSILALSFVVLVISFFLLG 55 (125)
T ss_pred HheecCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5666776666443 34455566766654
No 132
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=55.46 E-value=9.8 Score=28.47 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=28.2
Q ss_pred hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhh
Q 025279 23 GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIV 56 (255)
Q Consensus 23 ~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li 56 (255)
+++..+.+++..+|..+++.++|+.+.++|+.+.
T Consensus 79 fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 79 FVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 4667778887777778888999999999998764
No 133
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=53.85 E-value=1e+02 Score=23.85 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHH-HHHhhhhhhcccc
Q 025279 151 IQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVV-IAFGFYAVIWAQG 229 (255)
Q Consensus 151 ~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~l-I~~gv~l~~~~~~ 229 (255)
..+.....+.+++...-|..-.+..||.++++.+.. .-..+.+.+.+++. + +|..+ -+.|+++..+.++
T Consensus 31 ~~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~---ga~iG~IvG~f~~~-p------~G~iiG~~~Ga~l~El~~~ 100 (140)
T PF04306_consen 31 WFLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIW---GAIIGGIVGFFVLP-P------LGLIIGPFLGAFLGELLRG 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHHHHhh-H------HHHHHHHHHHHHHHHHHhC
Confidence 345666677777888899999999999999998876 44566777766544 1 15444 3467777655443
Q ss_pred c
Q 025279 230 K 230 (255)
Q Consensus 230 ~ 230 (255)
|
T Consensus 101 ~ 101 (140)
T PF04306_consen 101 K 101 (140)
T ss_pred C
Confidence 3
No 134
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=53.75 E-value=6.7 Score=30.06 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=27.3
Q ss_pred CceehhhhhchHHHHHHHHHHHHhCCCC---chhhhhhHHHHH-Hhhhhhhc
Q 025279 179 GPVFVALFKPLGTAIAVFMAVMFLGETP---HLGSLIGTVVIA-FGFYAVIW 226 (255)
Q Consensus 179 ~a~~~s~~~~l~Pi~a~l~~~~~lgE~~---~~~~~lG~~lI~-~gv~l~~~ 226 (255)
...+++.+.|+.|+.+.+.+.++ ++.+ ....++++++.+ .|..+..+
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l-~~~~~~~e~~~~l~~l~~l~~~~~~~~~ 116 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVL-GSYLGGSELWAILGGLLGLALGFLILRL 116 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888889999988888764 3333 334444444433 34444333
No 135
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=52.88 E-value=2e+02 Score=26.87 Aligned_cols=124 Identities=11% Similarity=0.125 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 025279 87 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVI 166 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~ 166 (255)
.|+++..+.-.++-+.-++.|+ +.+ |+.+....+..+..-++.+++ .|+ . .. .+..++. + .++..
T Consensus 300 YgiLFI~LTF~~fflfE~~~~~---~iH-piQY~LVGlAl~lFYlLLLSl-SEh-i---~F----~~AYliA-a-~a~i~ 364 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSKL---RIH-PIQYLLVGLALVLFYLLLLSL-SEH-I---GF----NLAYLIA-A-LACIG 364 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---ccc-HHHHHHHHHHHHHHHHHHHHH-Hhh-h---ch----HHHHHHH-H-HHHHH
Confidence 6788888777777777777653 445 465554444433333333332 221 1 11 1222221 2 23333
Q ss_pred HHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHH--HHhhhhhhccc
Q 025279 167 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI--AFGFYAVIWAQ 228 (255)
Q Consensus 167 ~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI--~~gv~l~~~~~ 228 (255)
--.+|..++-+..-.-......+.-+.+.+...+- -|. ..-++|.++. ++++.+...||
T Consensus 365 Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lLq-~Ed--yALL~GSl~LF~iLa~vM~~TRk 425 (430)
T PF06123_consen 365 LISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLLQ-SED--YALLMGSLLLFIILALVMYLTRK 425 (430)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-hhh--HHHHHHHHHHHHHHHHHHheeec
Confidence 34455555555444444556667777888887753 443 3444554444 44555544433
No 136
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=52.82 E-value=1e+02 Score=28.76 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=23.3
Q ss_pred hhchHHHHHHHHHHHH-hCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279 186 FKPLGTAIAVFMAVMF-LGETPHLGSLIGTVVIAFGFYAVIWAQG 229 (255)
Q Consensus 186 ~~~l~Pi~a~l~~~~~-lgE~~~~~~~lG~~lI~~gv~l~~~~~~ 229 (255)
.....|+++.++..+. .... ......|.++++.|+.+..+.++
T Consensus 394 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~y~~~~~ 437 (473)
T TIGR00905 394 KALIVGVIACVYSIWLLYAAG-LKYLLLGFILYAPGIIFYGRARK 437 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544432 2322 23455688888888766655443
No 137
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=52.59 E-value=1.7e+02 Score=25.96 Aligned_cols=34 Identities=6% Similarity=-0.143 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279 192 AIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 192 i~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~ 225 (255)
+...+.+++.-.-..+...++++++.+.++.+..
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 3344555544222244444455555555554443
No 138
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=51.96 E-value=33 Score=26.31 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=7.1
Q ss_pred chHHHHHHHHHHHHH
Q 025279 117 INLVFFSCFFGTIQC 131 (255)
Q Consensus 117 ~~~~~~~~~~~~l~~ 131 (255)
.....|..++|.+++
T Consensus 34 ~i~~~Y~i~fg~ll~ 48 (136)
T PF08507_consen 34 FILGVYCILFGLLLI 48 (136)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555555443
No 139
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=51.16 E-value=10 Score=27.87 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=25.7
Q ss_pred hhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279 28 GMEKVAIRSRSSQAKILGTVVSIAGAFIVS 57 (255)
Q Consensus 28 ~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~ 57 (255)
.-.+..-+.||++.+++|..++++|+.+|.
T Consensus 74 ~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil 103 (109)
T COG1742 74 AWLWVVDGVRPDRYDWIGAAICLAGVAVIL 103 (109)
T ss_pred HHHHHHcCcCCcHHHhhhHHHHHhceeeeE
Confidence 345667788999999999999999998874
No 140
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=50.95 E-value=1.4e+02 Score=24.55 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC--ceehhhhhchHHHHHHHHHH
Q 025279 152 QRTAVIYAAIVGTVIRSSIIAWCLQKKG--PVFVALFKPLGTAIAVFMAV 199 (255)
Q Consensus 152 ~~~~ll~lgi~~s~~~~~~~~~~l~~~~--a~~~s~~~~l~Pi~a~l~~~ 199 (255)
.+..++..|++++...|.+|.+..+..+ ..+-+..-++-.....++=|
T Consensus 126 GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lW 175 (226)
T COG4858 126 GLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLW 175 (226)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHH
Confidence 3566777888888888888888888766 44555555555444444433
No 141
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=50.62 E-value=1.9e+02 Score=25.90 Aligned_cols=19 Identities=16% Similarity=-0.020 Sum_probs=11.5
Q ss_pred chhhhhhHHHHHHhhhhhh
Q 025279 207 HLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 207 ~~~~~lG~~lI~~gv~l~~ 225 (255)
+....+++++.+.++++..
T Consensus 369 ~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 369 PGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345666666667766653
No 142
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=50.10 E-value=11 Score=29.70 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=14.7
Q ss_pred CceehhhhhchHHHHHHHHHHH
Q 025279 179 GPVFVALFKPLGTAIAVFMAVM 200 (255)
Q Consensus 179 ~a~~~s~~~~l~Pi~a~l~~~~ 200 (255)
...+++.+.|+.|+++.+.+..
T Consensus 73 ~llkaa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 73 SLLRSALLVYMTPLVGLFLGAA 94 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888887776654
No 143
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.84 E-value=10 Score=28.77 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=2.7
Q ss_pred hHHHHHH
Q 025279 213 GTVVIAF 219 (255)
Q Consensus 213 G~~lI~~ 219 (255)
|.+.+++
T Consensus 76 GvIg~Il 82 (122)
T PF01102_consen 76 GVIGIIL 82 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 144
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=49.72 E-value=4.5 Score=28.92 Aligned_cols=25 Identities=20% Similarity=-0.055 Sum_probs=12.7
Q ss_pred HHHHhhhhhhhhcccCccchhhhHh
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVV 48 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l 48 (255)
+.....+.+.++|+.++.|+.|+.+
T Consensus 68 v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 68 VGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHhheee
Confidence 4456678888999999999998865
No 145
>PRK11715 inner membrane protein; Provisional
Probab=48.36 E-value=2.3e+02 Score=26.43 Aligned_cols=123 Identities=10% Similarity=0.121 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 025279 87 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVI 166 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~ 166 (255)
.|+++..+.-.++-+.-++.| .+.+ |+.+....+..+..-++.+++ .|+ . .. .+..++..+. ...
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~---~~iH-piQYlLVGlAl~lFYLLLLSl-SEH-i---gF----~~AYliAa~a--~v~ 370 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKK---LRIH-PVQYLLVGLALVLFYLLLLSL-SEH-I---GF----TLAYLIAALA--CVL 370 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---ceec-HHHHHHHHHHHHHHHHHHHHH-Hhh-h---ch----HHHHHHHHHH--HHH
Confidence 577877777777777667654 3444 465554444444433333332 221 1 11 1222222222 222
Q ss_pred HHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHH--HHhhhhhhcc
Q 025279 167 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI--AFGFYAVIWA 227 (255)
Q Consensus 167 ~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI--~~gv~l~~~~ 227 (255)
-..+|..++-+..-.-......+.-+.+++.+.+ --|. ..-++|.++. ++++.+...|
T Consensus 371 li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~lL-q~ED--yALL~GSllLF~~La~vM~~TR 430 (436)
T PRK11715 371 LIGFYLSAVLRSWKRGLLFAAALAALYGVLYGLL-QSED--YALLLGSLLLFAVLALVMFLTR 430 (436)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HHhH--HHHHHHHHHHHHHHHHHHheee
Confidence 2333333333333333344555666777777765 3443 3444555444 4455554443
No 146
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=47.29 E-value=1.9e+02 Score=26.51 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC---ceehhhhhchHHHHHHHHHHHHhCCCCc----------------hhhhhhHH
Q 025279 155 AVIYAAIVGTVIRSSIIAWCLQKKG---PVFVALFKPLGTAIAVFMAVMFLGETPH----------------LGSLIGTV 215 (255)
Q Consensus 155 ~ll~lgi~~s~~~~~~~~~~l~~~~---a~~~s~~~~l~Pi~a~l~~~~~lgE~~~----------------~~~~lG~~ 215 (255)
..+.+|+++..+.+....+..+|.+ +..+-.+-..-=+++.+..-++-.+... ..|++|.+
T Consensus 276 ~A~~iG~iag~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~~~l~~Ql~g~~ 355 (399)
T PF00909_consen 276 GALLIGAIAGLISYFGVSWLLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASPEVNYSDGYGGLFYGNGRQLGIQLLGIV 355 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCHHCSS-SSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhhhhhhheecccceeEeccccceEeeeeccHHHHHHHHHHHhccccccccccccccCCchhHHHHHHHHHH
Confidence 3455677777777777766666654 5566666666677777777776665432 36777776
Q ss_pred HHHH
Q 025279 216 VIAF 219 (255)
Q Consensus 216 lI~~ 219 (255)
.++.
T Consensus 356 ~~~~ 359 (399)
T PF00909_consen 356 VILA 359 (399)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 147
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=44.21 E-value=2.1e+02 Score=26.59 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=14.8
Q ss_pred hhhhhHHHHHHhhhhhhccc
Q 025279 209 GSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 209 ~~~lG~~lI~~gv~l~~~~~ 228 (255)
...+|.++++.|+.++.+.+
T Consensus 412 ~~~~~~~~~~~g~~~y~~~~ 431 (468)
T TIGR03810 412 YLLLSAILYAPGIYFYARAR 431 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788888889988876533
No 148
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=44.07 E-value=1e+02 Score=26.55 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=33.0
Q ss_pred ehhhhhchHHHHHHHHHHHHhCC-----CCchhhhhhHHHHHHhhhhhhccc
Q 025279 182 FVALFKPLGTAIAVFMAVMFLGE-----TPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 182 ~~s~~~~l~Pi~a~l~~~~~lgE-----~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
..+.+..+..+.=.++..+=-++ -+|..|+++..+++.|+.+..+++
T Consensus 206 ~f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 206 VFALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hHHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777777642222 267899999999999987765433
No 149
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=43.13 E-value=2.7e+02 Score=25.59 Aligned_cols=67 Identities=9% Similarity=-0.152 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---hccCceehhhhhchHHHHHHHHHHHHhCCCCchhh-hhhHHHHHHhhhhh
Q 025279 157 IYAAIVGTVIRSSIIAWCL---QKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGS-LIGTVVIAFGFYAV 224 (255)
Q Consensus 157 l~lgi~~s~~~~~~~~~~l---~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~-~lG~~lI~~gv~l~ 224 (255)
.-++.+...+.|.+-..+. ++-.+..-.......|+.+++...++.-. .++.+ ..+...++.|..+.
T Consensus 354 ~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~y 424 (445)
T PRK10644 354 SSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTLIAFVYCIWAVVG-SGAKEVMWSFVTLMVITAFY 424 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccccchhHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHH
Confidence 3334444445554444332 22233212234456777777777655422 22222 33344444454444
No 150
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=42.66 E-value=34 Score=28.30 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=17.3
Q ss_pred HhCCCCchhhhhhHHHHH-Hhhhhhh
Q 025279 201 FLGETPHLGSLIGTVVIA-FGFYAVI 225 (255)
Q Consensus 201 ~lgE~~~~~~~lG~~lI~-~gv~l~~ 225 (255)
++|=.++-.++.|+++.+ .|.=+.+
T Consensus 64 ~fgIsl~af~IaGGiiL~~ia~~ml~ 89 (203)
T PF01914_consen 64 FFGISLPAFRIAGGIILFLIALEMLF 89 (203)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 467778888888877765 5655444
No 151
>PRK10655 potE putrescine transporter; Provisional
Probab=42.36 E-value=2.7e+02 Score=25.48 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279 189 LGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 189 l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~ 226 (255)
..|+.+.+...+..-..+......|..+++.|+.+...
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 426 (438)
T PRK10655 389 FIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGL 426 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544333222222345677888888776643
No 152
>PF15471 TMEM171: Transmembrane protein family 171
Probab=42.25 E-value=32 Score=29.73 Aligned_cols=19 Identities=11% Similarity=0.335 Sum_probs=15.5
Q ss_pred hhhhhhHHHHHHhhhhhhc
Q 025279 208 LGSLIGTVVIAFGFYAVIW 226 (255)
Q Consensus 208 ~~~~lG~~lI~~gv~l~~~ 226 (255)
.+|++|-.+++.|+.+...
T Consensus 161 slQImGPlIVl~GLCFFVV 179 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVV 179 (319)
T ss_pred ehhhhhhHHHHHhhhhhhe
Confidence 4789999999999887654
No 153
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=41.41 E-value=29 Score=19.37 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=9.2
Q ss_pred CchhhhhhHHHHHHhhhh
Q 025279 206 PHLGSLIGTVVIAFGFYA 223 (255)
Q Consensus 206 ~~~~~~lG~~lI~~gv~l 223 (255)
-.+..++|.+++..+.++
T Consensus 10 ~~~~~~~G~~l~~~~~~~ 27 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGGLL 27 (34)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 345566666444444433
No 154
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=39.42 E-value=2.5e+02 Score=25.81 Aligned_cols=8 Identities=13% Similarity=0.115 Sum_probs=3.1
Q ss_pred HHHhccCc
Q 025279 173 WCLQKKGP 180 (255)
Q Consensus 173 ~~l~~~~a 180 (255)
...+..++
T Consensus 357 ~~~~~~~~ 364 (455)
T TIGR00892 357 VLMDLVGA 364 (455)
T ss_pred HHHHHhhH
Confidence 33334443
No 155
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=38.93 E-value=1.6e+02 Score=25.08 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=53.2
Q ss_pred HHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279 171 IAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK 230 (255)
Q Consensus 171 ~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~ 230 (255)
-..++++.+...-.++-.+..+..+.....+||.+.+.+.....++++.+-+..+|...+
T Consensus 85 ~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q 144 (309)
T COG5070 85 SSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQ 144 (309)
T ss_pred cccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhh
Confidence 357788888888899999999999999999999999999999999999998888886653
No 156
>PF15102 TMEM154: TMEM154 protein family
Probab=38.44 E-value=28 Score=27.19 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=7.8
Q ss_pred HHHHHHhhhhhhccccc
Q 025279 214 TVVIAFGFYAVIWAQGK 230 (255)
Q Consensus 214 ~~lI~~gv~l~~~~~~~ 230 (255)
.++++..++++.+.|||
T Consensus 69 vlLLl~vV~lv~~~kRk 85 (146)
T PF15102_consen 69 VLLLLSVVCLVIYYKRK 85 (146)
T ss_pred HHHHHHHHHheeEEeec
Confidence 33444445555544433
No 157
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=37.76 E-value=48 Score=19.38 Aligned_cols=20 Identities=20% Similarity=-0.051 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 025279 87 LGGLLLTVTCFSSATWKIFQ 106 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~vl~ 106 (255)
+=+++-++.+.+|++|++..
T Consensus 6 liVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 34667789999999999864
No 158
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=37.55 E-value=12 Score=28.51 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 025279 155 AVIYAAIVGTVIRSSI 170 (255)
Q Consensus 155 ~ll~lgi~~s~~~~~~ 170 (255)
.++..|++.|.++|.+
T Consensus 58 vili~GvvvT~vays~ 73 (129)
T PF15099_consen 58 VILIAGVVVTAVAYSF 73 (129)
T ss_pred HHHHHhhHhheeeEee
Confidence 4566777788887766
No 159
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=37.42 E-value=39 Score=24.44 Aligned_cols=18 Identities=11% Similarity=0.407 Sum_probs=10.9
Q ss_pred hhhhHHHHHHhhhhhhcc
Q 025279 210 SLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 210 ~~lG~~lI~~gv~l~~~~ 227 (255)
.++|..+++-..+.+.|+
T Consensus 49 If~Gi~lMlPAav~ivWR 66 (96)
T PF07214_consen 49 IFVGIGLMLPAAVNIVWR 66 (96)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 446777777555555564
No 160
>PRK09528 lacY galactoside permease; Reviewed
Probab=35.86 E-value=3.2e+02 Score=24.45 Aligned_cols=6 Identities=0% Similarity=0.135 Sum_probs=2.4
Q ss_pred HHHHHH
Q 025279 195 VFMAVM 200 (255)
Q Consensus 195 ~l~~~~ 200 (255)
.+.+++
T Consensus 370 ~~~G~l 375 (420)
T PRK09528 370 TLAGNL 375 (420)
T ss_pred HHHHHH
Confidence 334443
No 161
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=35.39 E-value=3.1e+02 Score=24.14 Aligned_cols=14 Identities=0% Similarity=-0.220 Sum_probs=6.5
Q ss_pred hchHHHHHHHHHHH
Q 025279 187 KPLGTAIAVFMAVM 200 (255)
Q Consensus 187 ~~l~Pi~a~l~~~~ 200 (255)
...+++-..+.+++
T Consensus 333 ~~~~~~g~~~~~~l 346 (392)
T PRK10473 333 GIAQVCGSSLWIWL 346 (392)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555444
No 162
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=33.23 E-value=2.6e+02 Score=22.65 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=23.2
Q ss_pred HHHHHHHhCCCCchhhhhhHHHHH--Hhhhhhhccc
Q 025279 195 VFMAVMFLGETPHLGSLIGTVVIA--FGFYAVIWAQ 228 (255)
Q Consensus 195 ~l~~~~~lgE~~~~~~~lG~~lI~--~gv~l~~~~~ 228 (255)
-.+|..++.|-.-+..+.|..+.+ .|++...++|
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~~~ 167 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLVAMIGAIVLTHDL 167 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445777788888888888877754 5665555443
No 163
>PRK11021 putative transporter; Provisional
Probab=33.18 E-value=3.7e+02 Score=24.30 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhh
Q 025279 188 PLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAV 224 (255)
Q Consensus 188 ~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~ 224 (255)
...|+.+.+...+++-. .++..+...++...+..+.
T Consensus 365 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 400 (410)
T PRK11021 365 RPLAVLGCLLCLLLLVM-LGWKMLYALIMLALLWLFL 400 (410)
T ss_pred HHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH
Confidence 35688877777765443 2344455555544544443
No 164
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=32.83 E-value=63 Score=18.90 Aligned_cols=21 Identities=29% Similarity=0.108 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 025279 87 LGGLLLTVTCFSSATWKIFQA 107 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~vl~k 107 (255)
.=++.-++.|.+|++|++..-
T Consensus 6 liVl~Pil~A~gWa~fNIg~~ 26 (36)
T PF06298_consen 6 LIVLLPILPAAGWALFNIGRA 26 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 335667889999999998743
No 165
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=31.80 E-value=3.7e+02 Score=25.48 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=9.9
Q ss_pred hhhhhchHHHHHHHHHHHHhC
Q 025279 183 VALFKPLGTAIAVFMAVMFLG 203 (255)
Q Consensus 183 ~s~~~~l~Pi~a~l~~~~~lg 203 (255)
++.....+=..+.+.+-++..
T Consensus 406 ~~~~i~~~~s~~~~~~~~~~~ 426 (495)
T KOG2533|consen 406 VSAIIDGTGSAGAISGQLFRS 426 (495)
T ss_pred HhhhhcchhHHHHhhhhhccc
Confidence 344444444455555554444
No 166
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=31.21 E-value=1.9e+02 Score=24.96 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=33.3
Q ss_pred ehhhhhchHHHHHHHHHHHHhCC-----CCchhhhhhHHHHHHhhhhhhccc
Q 025279 182 FVALFKPLGTAIAVFMAVMFLGE-----TPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 182 ~~s~~~~l~Pi~a~l~~~~~lgE-----~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
....+..+..+.=.++..+--++ .++..|+++..+++.|+++..+++
T Consensus 208 ~f~~yl~~Y~~~Rf~iE~~R~~~~~~~~~ls~~Q~isl~~~~~gi~~~~~~~ 259 (269)
T PRK00052 208 VFGLYLIGYGLGRFFIEFFREPDAQLGGGLTMGQILSIPMILLGIILLIWAY 259 (269)
T ss_pred HHHHHHHHHHHHHHhhhhhccCchhhccCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777553333 258899999999999988766543
No 167
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=31.01 E-value=2.5e+02 Score=24.35 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=31.7
Q ss_pred ehhhhhchHHHHHHHHHHHHhCC---------CCchhhhhhHHHHHHhhhhhhcc
Q 025279 182 FVALFKPLGTAIAVFMAVMFLGE---------TPHLGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 182 ~~s~~~~l~Pi~a~l~~~~~lgE---------~~~~~~~lG~~lI~~gv~l~~~~ 227 (255)
..+.+..+..+.=.++..+=-++ .++..|++...+++.|+++..+.
T Consensus 213 ~~~~yli~Y~~~Rf~iEf~R~~~~~~~~~~~~~lt~~Q~~sl~~i~~g~~~~~~~ 267 (278)
T TIGR00544 213 IFGVYLIGYGIFRFIIEGLREPDLMLTEFSFLNISMGQILSLLMIAGILIIMLLA 267 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhccccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 33566666677777777553222 26889999999999998876543
No 168
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=30.64 E-value=3.2e+02 Score=25.76 Aligned_cols=14 Identities=14% Similarity=0.180 Sum_probs=5.6
Q ss_pred hhHHHHHHhhhhhh
Q 025279 212 IGTVVIAFGFYAVI 225 (255)
Q Consensus 212 lG~~lI~~gv~l~~ 225 (255)
.|.++-+....+..
T Consensus 457 ~~~~~~~~~~v~~s 470 (502)
T PRK15419 457 PGFIFGSIGIVVFS 470 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444343333333
No 169
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=30.54 E-value=3.4e+02 Score=23.15 Aligned_cols=77 Identities=9% Similarity=0.070 Sum_probs=43.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCce----------ehhhhhchHHHHHHHHHHHHhCCCCc---------h
Q 025279 148 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPV----------FVALFKPLGTAIAVFMAVMFLGETPH---------L 208 (255)
Q Consensus 148 ~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~----------~~s~~~~l~Pi~a~l~~~~~lgE~~~---------~ 208 (255)
.+...|..+..+.++.--..+.+..+..+-.+-. ..++..+...+.+...|+. -.++++ .
T Consensus 123 ySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~-ek~~f~~~~~~s~~~~ 201 (245)
T KOG1619|consen 123 YSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLL-EKLTFLCFGDLSTKNP 201 (245)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCcccccCH
Confidence 4455788877777666555555555555443321 2355666666777777762 222111 1
Q ss_pred ----hhhhhHHHHHHhhhhhh
Q 025279 209 ----GSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 209 ----~~~lG~~lI~~gv~l~~ 225 (255)
...+|..+++.|+.+..
T Consensus 202 e~~l~n~~gv~~il~g~~Vl~ 222 (245)
T KOG1619|consen 202 EGYLVNFLGVFIILFGVLVLT 222 (245)
T ss_pred HHHHHHHHHHHHHHHHHHheE
Confidence 23577888888855443
No 170
>PRK10054 putative transporter; Provisional
Probab=30.26 E-value=4e+02 Score=23.80 Aligned_cols=27 Identities=4% Similarity=0.068 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025279 87 LGGLLLTVTCFSSATWKIFQAAVLKEYP 114 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~ 114 (255)
.|.+.... .+..........+..+|..
T Consensus 45 ~g~~~s~~-~~~~~~~~~~~G~l~Dr~g 71 (395)
T PRK10054 45 IGYAMTIA-LTIGVVFSLGFGILADKFD 71 (395)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhcC
Confidence 44444432 3344455555666666665
No 171
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=30.08 E-value=34 Score=23.57 Aligned_cols=43 Identities=9% Similarity=0.043 Sum_probs=23.8
Q ss_pred hhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 186 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 186 ~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
...+.-+++.+.|++.-+=+.+...++++.++.+-+.+-.|.-
T Consensus 16 il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv~vP~Wp~ 58 (76)
T PF06645_consen 16 ILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLLVVVPPWPF 58 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeCCcHh
Confidence 3444556777778775444555555555555555554445543
No 172
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=29.35 E-value=4.9e+02 Score=24.55 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=8.0
Q ss_pred cchHHHHHHHHHHHH
Q 025279 116 KINLVFFSCFFGTIQ 130 (255)
Q Consensus 116 ~~~~~~~~~~~~~l~ 130 (255)
|......+.+++.+.
T Consensus 331 P~~a~~~~~~i~~l~ 345 (507)
T TIGR00910 331 PVPLVIIQGIITSIA 345 (507)
T ss_pred cHHHHHHHHHHHHHH
Confidence 555555555555443
No 173
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=28.37 E-value=5e+02 Score=24.36 Aligned_cols=41 Identities=15% Similarity=-0.070 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHH
Q 025279 152 QRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTA 192 (255)
Q Consensus 152 ~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi 192 (255)
.|..-++.|++.+...-..=..-.+-.|+.+-+-+..+.-+
T Consensus 383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i 423 (477)
T PF11700_consen 383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAI 423 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 45555666665555544444555566676666655544433
No 174
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=28.24 E-value=68 Score=24.51 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=5.3
Q ss_pred hhHHHHHHhhhh
Q 025279 212 IGTVVIAFGFYA 223 (255)
Q Consensus 212 lG~~lI~~gv~l 223 (255)
+|..+++.|++.
T Consensus 91 ~g~~~~~~G~~~ 102 (136)
T PF08507_consen 91 IGLLLFLVGVIY 102 (136)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 175
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=27.58 E-value=47 Score=19.93 Aligned_cols=18 Identities=22% Similarity=0.811 Sum_probs=10.4
Q ss_pred hhHHHHHHhhhhhhcccc
Q 025279 212 IGTVVIAFGFYAVIWAQG 229 (255)
Q Consensus 212 lG~~lI~~gv~l~~~~~~ 229 (255)
+|.+++++++++..|+++
T Consensus 21 V~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred hHHHHHHHHHHhheEEec
Confidence 355566667766655443
No 176
>PRK10489 enterobactin exporter EntS; Provisional
Probab=27.51 E-value=4.5e+02 Score=23.46 Aligned_cols=20 Identities=10% Similarity=-0.051 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 025279 95 TCFSSATWKIFQAAVLKEYP 114 (255)
Q Consensus 95 aa~~~a~~~vl~k~~~~~~~ 114 (255)
..+.+.+...+..+..+|++
T Consensus 61 ~~l~~~~~~~~~G~l~dr~g 80 (417)
T PRK10489 61 TGGAMFIGLMVGGVLADRYD 80 (417)
T ss_pred HHHHHHHHHHhhHHHhhhcC
Confidence 44555555555555555554
No 177
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=26.81 E-value=86 Score=18.80 Aligned_cols=19 Identities=16% Similarity=-0.052 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025279 88 GGLLLTVTCFSSATWKIFQ 106 (255)
Q Consensus 88 G~~l~l~aa~~~a~~~vl~ 106 (255)
=+++-++.+.+|++|++..
T Consensus 7 iVl~Pil~A~~Wa~fNIg~ 25 (40)
T PRK13240 7 IVLAPILAAAGWAVFNIGK 25 (40)
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 3567788999999999863
No 178
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=26.79 E-value=52 Score=21.64 Aligned_cols=38 Identities=8% Similarity=0.246 Sum_probs=26.5
Q ss_pred ceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHH
Q 025279 180 PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI 217 (255)
Q Consensus 180 a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI 217 (255)
+...+.++.+.|..+..++-.+-+..-++.+++|+++.
T Consensus 26 ~~~ig~~~~~~~~~G~~~G~~~~~~~~~~~~~igg~iL 63 (67)
T PF02659_consen 26 ALIIGIFQFIMPLLGLLLGRRLGRFIGSYAEWIGGIIL 63 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888888888776655566777776553
No 179
>TIGR00893 2A0114 d-galactonate transporter.
Probab=26.49 E-value=4.1e+02 Score=22.70 Aligned_cols=18 Identities=6% Similarity=0.058 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 025279 97 FSSATWKIFQAAVLKEYP 114 (255)
Q Consensus 97 ~~~a~~~vl~k~~~~~~~ 114 (255)
+...+......+..++..
T Consensus 40 ~~~~~~~~~~g~l~d~~g 57 (399)
T TIGR00893 40 WGYVVGQFPGGWLLDRFG 57 (399)
T ss_pred HHHHHHHHhHHHHHHhcC
Confidence 334444444444444443
No 180
>PRK14780 lipoprotein signal peptidase; Provisional
Probab=26.11 E-value=79 Score=27.25 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=7.2
Q ss_pred hhhhhHHHHHHhhh
Q 025279 209 GSLIGTVVIAFGFY 222 (255)
Q Consensus 209 ~~~lG~~lI~~gv~ 222 (255)
.-.+|+++++...+
T Consensus 206 ~I~~G~~llv~~~l 219 (263)
T PRK14780 206 YIVVGVCVLVVILI 219 (263)
T ss_pred HHHHHHHHHHHHHH
Confidence 34456655555444
No 181
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=25.71 E-value=44 Score=23.59 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=11.3
Q ss_pred chhhhhhHHHHHHhhhhhh
Q 025279 207 HLGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 207 ~~~~~lG~~lI~~gv~l~~ 225 (255)
+...++|..+.+.|.++..
T Consensus 3 N~~Fl~~l~lliig~~~~v 21 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFLFV 21 (92)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445677777666655543
No 182
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=25.64 E-value=7e+02 Score=25.08 Aligned_cols=41 Identities=15% Similarity=0.231 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHH
Q 025279 94 VTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVS 135 (255)
Q Consensus 94 ~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (255)
+.++..-...++...+.+++.. -......++.+++.++.+.
T Consensus 603 l~~l~~i~G~il~g~L~Dr~GR-r~~l~~~~~lsai~~ll~~ 643 (742)
T TIGR01299 603 LGTLAVLPGNIVSALLMDKIGR-LRMLAGSMVLSCISCFFLS 643 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555542 3333444444444444333
No 183
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=25.46 E-value=14 Score=22.62 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=10.0
Q ss_pred CchhhhhhHHHHHHhhh
Q 025279 206 PHLGSLIGTVVIAFGFY 222 (255)
Q Consensus 206 ~~~~~~lG~~lI~~gv~ 222 (255)
|+|..++=.++|++|++
T Consensus 2 p~wlt~iFsvvIil~If 18 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIF 18 (49)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 55666665666665553
No 184
>PF15345 TMEM51: Transmembrane protein 51
Probab=25.37 E-value=52 Score=27.80 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=14.6
Q ss_pred hhHHHHHHhhhhhhccccccccc
Q 025279 212 IGTVVIAFGFYAVIWAQGKESNM 234 (255)
Q Consensus 212 lG~~lI~~gv~l~~~~~~~~~~~ 234 (255)
.|.++.++++++-.+.|+|+++.
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq~ 89 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQG 89 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 46666678888876666554433
No 185
>PRK03893 putative sialic acid transporter; Provisional
Probab=24.97 E-value=5.3e+02 Score=23.51 Aligned_cols=12 Identities=0% Similarity=-0.468 Sum_probs=4.8
Q ss_pred HHHHHHHHHhhc
Q 025279 102 WKIFQAAVLKEY 113 (255)
Q Consensus 102 ~~vl~k~~~~~~ 113 (255)
......+..++.
T Consensus 327 g~~~~g~l~dr~ 338 (496)
T PRK03893 327 GCCVGGFLGDWL 338 (496)
T ss_pred HHHHHHHHHHHh
Confidence 333433444443
No 186
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=24.87 E-value=5.5e+02 Score=23.64 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccccc
Q 025279 192 AIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKES 232 (255)
Q Consensus 192 i~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~ 232 (255)
.=+.+-+.++-+--+...-+.|.++.+.++.+....+++++
T Consensus 350 ~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 350 LGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444444444445666778999999999888776555443
No 187
>PRK03545 putative arabinose transporter; Provisional
Probab=24.74 E-value=4.9e+02 Score=22.95 Aligned_cols=36 Identities=11% Similarity=-0.161 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhh
Q 025279 189 LGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAV 224 (255)
Q Consensus 189 l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~ 224 (255)
-.++-..+.+++.-.-..+...+.++.+.+.+..+.
T Consensus 341 g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 341 GIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 344555566666533334445555555555555443
No 188
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=24.54 E-value=62 Score=24.98 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=24.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025279 83 SNWALGGLLLTVTCFSSATWKIFQAAVLKE 112 (255)
Q Consensus 83 ~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~ 112 (255)
+++.+|.++.-+=.+.|++|++++|.+.++
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l~ed 131 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTLDED 131 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhccccCCC
Confidence 356788888888899999999999886544
No 189
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=24.53 E-value=4.7e+02 Score=23.95 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHH-----hCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 188 PLGTAIAVFMAVMF-----LGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 188 ~l~Pi~a~l~~~~~-----lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
...|+.+.+.+.++ ..++.. ..+.+.++++.|+.++...|
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~y~~~~ 435 (445)
T PRK11357 391 GLMTTLAIASSLILVASTFVWAPIP-GLICAVIVIATGLPAYAFWA 435 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHhhhHHhhee
Confidence 35566666666544 244322 12356667777766654433
No 190
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=23.94 E-value=5e+02 Score=22.79 Aligned_cols=19 Identities=16% Similarity=-0.017 Sum_probs=9.8
Q ss_pred CchhhhhhHHHHHHhhhhh
Q 025279 206 PHLGSLIGTVVIAFGFYAV 224 (255)
Q Consensus 206 ~~~~~~lG~~lI~~gv~l~ 224 (255)
.+...++.+++.+.+..+.
T Consensus 376 ~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 376 FRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4455555555555554443
No 191
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=23.94 E-value=26 Score=30.64 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=0.0
Q ss_pred hhhHHHHHHH
Q 025279 85 WALGGLLLTV 94 (255)
Q Consensus 85 ~~~G~~l~l~ 94 (255)
.+.|+++.++
T Consensus 105 LF~Gi~~l~l 114 (381)
T PF05297_consen 105 LFVGIVILFL 114 (381)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3456554433
No 192
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=23.78 E-value=70 Score=20.62 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=2.8
Q ss_pred HHHhhhh
Q 025279 217 IAFGFYA 223 (255)
Q Consensus 217 I~~gv~l 223 (255)
+++|+++
T Consensus 11 iVlgvIi 17 (55)
T PF11446_consen 11 IVLGVII 17 (55)
T ss_pred HHHHHHH
Confidence 3344443
No 193
>COG2056 Predicted permease [General function prediction only]
Probab=23.75 E-value=59 Score=29.58 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHH-----HHHHHHHhh
Q 025279 87 LGGLLLTVTCFSSATWK-----IFQAAVLKE 112 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~-----vl~k~~~~~ 112 (255)
...-.++++++..++.. ++.+|..+.
T Consensus 57 vALSYalLGafAvaIsksGltd~l~~kvi~~ 87 (444)
T COG2056 57 VALSYALLGAFAVAISKSGLTDVLAKKVIRL 87 (444)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44555666666666543 455555443
No 194
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=23.70 E-value=5.7e+02 Score=23.37 Aligned_cols=75 Identities=8% Similarity=-0.025 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-ceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279 154 TAVIYAAIVGTVIRSSIIAWCLQKKG-PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK 230 (255)
Q Consensus 154 ~~ll~lgi~~s~~~~~~~~~~l~~~~-a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~ 230 (255)
..++-++.+...+.|.+...+.-|.. +..-.......+..+.++..+.+.. .++ ..++..+.+.++....+.+|+
T Consensus 352 ~~l~~~~~~~~l~~y~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 427 (435)
T PRK10435 352 GELTGIAVLLTMLPYFYSCVDLIRFEGVNIRNFVSLICSVLGCVFCFIALMG-ASS-FELAGTFIVSLIILMFYARKM 427 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH-hhH-HHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555544443222 2111222335566666666665542 233 344444444444444454433
No 195
>PRK09579 multidrug efflux protein; Reviewed
Probab=23.54 E-value=2.5e+02 Score=29.29 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhh
Q 025279 190 GTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAV 224 (255)
Q Consensus 190 ~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~ 224 (255)
.-+.+++++.++.|.+++....+|. ++++|+..-
T Consensus 880 la~~G~~~~L~i~~~~l~~~s~~G~-i~L~GivVn 913 (1017)
T PRK09579 880 LSICGALIPLFLGVSSMNIYTQVGL-VTLIGLISK 913 (1017)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHH-HHHHHHHHc
Confidence 3346788888889999999999884 455666554
No 196
>PRK10591 hypothetical protein; Provisional
Probab=23.34 E-value=2.1e+02 Score=20.50 Aligned_cols=18 Identities=17% Similarity=0.530 Sum_probs=11.6
Q ss_pred hhhhHHHHHHhhhhhhcc
Q 025279 210 SLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 210 ~~lG~~lI~~gv~l~~~~ 227 (255)
.++|..+++-..+.+.||
T Consensus 49 if~Gi~lmiPAav~ivWR 66 (92)
T PRK10591 49 IFLGVLLMLPAAVVIIWR 66 (92)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 356777777666666665
No 197
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=22.83 E-value=52 Score=27.12 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=36.2
Q ss_pred hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 184 ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 184 s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
.......+++.++.++.+.+++.+..+++..+++..|+....+.+
T Consensus 8 ~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~ 52 (222)
T TIGR00803 8 IIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGD 52 (222)
T ss_pred HHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhH
Confidence 345567788888999989999988999999999998887765543
No 198
>COG2034 Predicted membrane protein [Function unknown]
Probab=22.78 E-value=96 Score=21.89 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=18.1
Q ss_pred hhhhhHHHHHHhhhhhhcccccccc
Q 025279 209 GSLIGTVVIAFGFYAVIWAQGKESN 233 (255)
Q Consensus 209 ~~~lG~~lI~~gv~l~~~~~~~~~~ 233 (255)
...+|..+++.|+.+..+.+.++++
T Consensus 14 li~iGf~LifLGi~l~~~~~~~~~~ 38 (85)
T COG2034 14 LIFIGFLLIFLGIVLPAFSPFAESG 38 (85)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccC
Confidence 4568888899998887776655443
No 199
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=22.49 E-value=6.2e+02 Score=23.37 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=14.1
Q ss_pred CccchhhhHhhhhhhhhhh
Q 025279 39 SQAKILGTVVSIAGAFIVS 57 (255)
Q Consensus 39 ~~~~~~g~~l~~~Gv~li~ 57 (255)
..|-+...++..+|.+++.
T Consensus 89 ~~Ri~~~~~l~~~g~l~va 107 (402)
T PF02487_consen 89 WIRILICVALSAAGMLLVA 107 (402)
T ss_pred hHHHHHHHHHHHHHHhhee
Confidence 4566777888888888874
No 200
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=22.32 E-value=2.4e+02 Score=18.58 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025279 85 WALGGLLLTVTCFSSATWKIFQAAVLKE 112 (255)
Q Consensus 85 ~~~G~~l~l~aa~~~a~~~vl~k~~~~~ 112 (255)
...+.++.+++.+|+.+++....+..++
T Consensus 4 ~~l~~~~~llg~~~l~i~~~~~syVd~~ 31 (63)
T PF13127_consen 4 YILSLILLLLGVVCLFIFNIIGSYVDED 31 (63)
T ss_pred hHHHHHHHHHHHHHHHHHhcccceECCC
Confidence 4567778888888888888776665443
No 201
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=22.08 E-value=6.3e+02 Score=23.30 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=6.9
Q ss_pred hhhHHHHHHhhhhh
Q 025279 211 LIGTVVIAFGFYAV 224 (255)
Q Consensus 211 ~lG~~lI~~gv~l~ 224 (255)
+.|+.++++++...
T Consensus 417 ~~~~~~~i~~~~~~ 430 (476)
T PLN00028 417 LMGVMIIACTLPVA 430 (476)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555554443
No 202
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.62 E-value=3.3e+02 Score=23.90 Aligned_cols=76 Identities=13% Similarity=0.219 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--c-CceehhhhhchHHHHHHHHHHHHhCCC-Cc------hhhhhhHHHHHHhhhhhh
Q 025279 156 VIYAAIVGTVIRSSIIAWCLQK--K-GPVFVALFKPLGTAIAVFMAVMFLGET-PH------LGSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 156 ll~lgi~~s~~~~~~~~~~l~~--~-~a~~~s~~~~l~Pi~a~l~~~~~lgE~-~~------~~~~lG~~lI~~gv~l~~ 225 (255)
-+|=++....+.+.++++.-++ . +-...+.+....-++=..+..+--++. .. +.|++...+|++|+++..
T Consensus 192 qLYE~~~~~iv~~iil~~~~~~~~~~~G~v~~~y~~~Yg~~Rf~iE~~R~~~~~~~~~~~~~mgqilSi~mIl~Gi~~~~ 271 (287)
T COG0682 192 QLYESFLEGIVFFIILFLFRRKPLLKSGFVFGLYLIGYGLFRFFIEFFREPDLMLGGLIRILMGQILSIPMILLGLWLII 271 (287)
T ss_pred HHHHHHHHHHHhhhhHHHHHhcccCCCeeeehhHHHHHHHHHHhhhhhhcCchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3445555554555555555543 1 123334444444444444443322221 11 268889999999998877
Q ss_pred cccccc
Q 025279 226 WAQGKE 231 (255)
Q Consensus 226 ~~~~~~ 231 (255)
+.++|.
T Consensus 272 ~~~~k~ 277 (287)
T COG0682 272 YLYKKA 277 (287)
T ss_pred HHHHhc
Confidence 655443
No 203
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=21.47 E-value=5.4e+02 Score=22.30 Aligned_cols=19 Identities=11% Similarity=-0.129 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 025279 96 CFSSATWKIFQAAVLKEYP 114 (255)
Q Consensus 96 a~~~a~~~vl~k~~~~~~~ 114 (255)
.+...+.........+|..
T Consensus 57 ~~~~~~~~~~~G~l~Dr~g 75 (405)
T TIGR00891 57 LISRWFGALMFGLWGDRYG 75 (405)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3444444444455555544
No 204
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=21.35 E-value=93 Score=27.16 Aligned_cols=36 Identities=11% Similarity=0.257 Sum_probs=17.5
Q ss_pred HHHHHhhhhhhcccccccccc--CCCCCccCCcCCCCC
Q 025279 215 VVIAFGFYAVIWAQGKESNMT--TGNVGSLESLNQKIP 250 (255)
Q Consensus 215 ~lI~~gv~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 250 (255)
+++++|+++...+|++++... +.++.+|++-=+..|
T Consensus 243 ll~l~Gii~~~~~r~~~~~~~~p~~~~~d~~~~~~~vp 280 (281)
T PF12768_consen 243 LLVLIGIILAYIRRRRQGYVPAPTSPRIDEDEMMQRVP 280 (281)
T ss_pred HHHHHHHHHHHHHhhhccCcCCCcccccCcccccccCC
Confidence 345577777665555443332 222344444444444
No 205
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=21.09 E-value=6.6e+02 Score=23.18 Aligned_cols=64 Identities=23% Similarity=0.213 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---CceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHH
Q 025279 155 AVIYAAIVGTVIRSSIIAWCLQKK---GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAF 219 (255)
Q Consensus 155 ~ll~lgi~~s~~~~~~~~~~l~~~---~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~ 219 (255)
..+.+|++++.+.+...-+ ++|. ++..+-..-..-=+++.+..-+|-++..=..|++|.+.++.
T Consensus 295 ~A~iiG~iag~v~~~~~~~-~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~~~l~~Ql~g~~~~~~ 361 (404)
T TIGR03644 295 AATLIGAVGGVIVVFSIVL-LDKLKIDDPVGAISVHGVAGIWGTLVVPITNGDASFGAQLIGAATIFA 361 (404)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhCCCCCCcCchHhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3445677677666655533 3443 35555555555557777776665444444468888777653
No 206
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=20.43 E-value=3.9e+02 Score=25.37 Aligned_cols=62 Identities=11% Similarity=-0.195 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCce------ehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHH
Q 025279 156 VIYAAIVGTVIRSSIIAWCLQKKGPV------FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI 217 (255)
Q Consensus 156 ll~lgi~~s~~~~~~~~~~l~~~~a~------~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI 217 (255)
++|...++.+.+-.-|+..-+-.+.. .++....-.--+.+.+.+..+++.++...++=.++.
T Consensus 375 ~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~ 442 (485)
T KOG0569|consen 375 FLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIP 442 (485)
T ss_pred HHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 44555555555555566555555432 223333333444555566666776666544444433
No 207
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=20.43 E-value=1.6e+02 Score=22.98 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=12.0
Q ss_pred hhhhhHHHHHHhhhhhh
Q 025279 209 GSLIGTVVIAFGFYAVI 225 (255)
Q Consensus 209 ~~~lG~~lI~~gv~l~~ 225 (255)
...+|+++++.|+.+..
T Consensus 42 ~l~lG~lvllvGiaMAv 58 (141)
T PF10177_consen 42 FLLLGILVLLVGIAMAV 58 (141)
T ss_pred HHHHHHHHHHHhhHhhe
Confidence 34577888888887655
No 208
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=20.08 E-value=6.1e+02 Score=22.36 Aligned_cols=27 Identities=7% Similarity=0.091 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025279 87 LGGLLLTVTCFSSATWKIFQAAVLKEYP 114 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~ 114 (255)
.|.+. -...+...+......+..+|..
T Consensus 40 ~g~~~-~~~~l~~~i~~~~~G~l~Dr~g 66 (396)
T TIGR00882 40 TGIVF-SCISLFSILFQPLFGLISDKLG 66 (396)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhC
Confidence 44433 3455566666666666666665
Done!