Query 025279
Match_columns 255
No_of_seqs 127 out of 1398
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 07:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.4 9.6E-13 3.3E-17 101.2 7.0 70 159-228 35-105 (137)
2 3b5d_A Multidrug transporter E 98.9 4.8E-09 1.7E-13 77.6 8.6 69 159-227 35-104 (110)
3 3b5d_A Multidrug transporter E 90.8 0.047 1.6E-06 39.6 0.1 34 24-57 69-102 (110)
4 2i68_A Protein EMRE; transmemb 89.0 0.071 2.4E-06 40.3 -0.2 36 23-58 68-103 (137)
5 1pw4_A Glycerol-3-phosphate tr 69.8 52 0.0018 28.1 11.6 12 170-181 367-378 (451)
6 3o7q_A L-fucose-proton symport 69.2 53 0.0018 27.9 12.2 21 94-114 69-89 (438)
7 4aps_A DI-OR tripeptide H+ sym 65.7 43 0.0015 29.2 10.2 12 170-181 407-418 (491)
8 4aps_A DI-OR tripeptide H+ sym 65.6 68 0.0023 27.9 14.2 21 94-114 62-83 (491)
9 3l1l_A Arginine/agmatine antip 59.2 23 0.00079 30.9 7.1 43 187-229 387-429 (445)
10 2zxe_G FXYD10, phospholemman-l 38.4 18 0.0006 23.8 2.0 18 212-229 26-43 (74)
11 2xut_A Proton/peptide symporte 34.8 2.3E+02 0.0078 24.6 11.4 20 95-114 63-83 (524)
12 2xut_A Proton/peptide symporte 26.0 1.8E+02 0.0063 25.3 7.5 11 170-180 426-436 (524)
13 2jo1_A Phospholemman; FXYD1, N 25.5 33 0.0011 22.3 1.6 15 213-227 24-38 (72)
14 3rko_J NADH-quinone oxidoreduc 25.4 2.4E+02 0.0081 21.9 11.9 34 195-228 127-162 (184)
15 4djk_A Probable glutamate/gamm 22.6 3.8E+02 0.013 23.3 11.3 14 212-225 450-463 (511)
16 2jp3_A FXYD domain-containing 22.5 43 0.0015 21.5 1.7 17 212-228 24-40 (67)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.36 E-value=9.6e-13 Score=101.21 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCceehhhh-hchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279 159 AAIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 159 lgi~~s~~~~~~~~~~l~~~~a~~~s~~-~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~ 228 (255)
+++++++++|.+|++++|+.+++++..+ ..+.|+++++++++++||++++.+++|+++|++|+++.+..+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5778899999999999999999999888 899999999999999999999999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.91 E-value=4.8e-09 Score=77.57 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCceehhhh-hchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279 159 AAIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 227 (255)
Q Consensus 159 lgi~~s~~~~~~~~~~l~~~~a~~~s~~-~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~ 227 (255)
.++++.+++|.++.+++|+.|.+++..+ ..+.|+++++++++++||++++.+++|..+|+.|+++.+..
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 5667888999999999999999999777 89999999999999999999999999999999999998754
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=90.78 E-value=0.047 Score=39.58 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=30.2
Q ss_pred HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279 24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS 57 (255)
Q Consensus 24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~ 57 (255)
....+.+.+.++|++++.+++|+.+.++|++++.
T Consensus 69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4556788899999999999999999999999984
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=88.98 E-value=0.071 Score=40.30 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=25.3
Q ss_pred hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhh
Q 025279 23 GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 58 (255)
Q Consensus 23 ~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 58 (255)
..+..+.+.+.++|++++.+++|+++.++|++++..
T Consensus 68 pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 68 IVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 355567888899999999999999999999999853
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=69.81 E-value=52 Score=28.06 Aligned_cols=12 Identities=17% Similarity=-0.072 Sum_probs=6.7
Q ss_pred HHHHHHhccCce
Q 025279 170 IIAWCLQKKGPV 181 (255)
Q Consensus 170 ~~~~~l~~~~a~ 181 (255)
.+.+..+..++.
T Consensus 367 ~~~~~~~~~~~~ 378 (451)
T 1pw4_A 367 IGLHALELAPKK 378 (451)
T ss_dssp HHHHHHHTSCTT
T ss_pred HHHHHHHHhchh
Confidence 345566666654
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=69.16 E-value=53 Score=27.92 Aligned_cols=21 Identities=14% Similarity=0.108 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 025279 94 VTCFSSATWKIFQAAVLKEYP 114 (255)
Q Consensus 94 ~aa~~~a~~~vl~k~~~~~~~ 114 (255)
...+.+.+......+..+|+.
T Consensus 69 ~~~~~~~i~~~~~G~l~dr~g 89 (438)
T 3o7q_A 69 AFYFGYFIIPIPAGILMKKLS 89 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhHHHHHHHhc
Confidence 344555556666666666665
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=65.72 E-value=43 Score=29.20 Aligned_cols=12 Identities=0% Similarity=-0.222 Sum_probs=5.7
Q ss_pred HHHHHHhccCce
Q 025279 170 IIAWCLQKKGPV 181 (255)
Q Consensus 170 ~~~~~l~~~~a~ 181 (255)
.+.+..+..+..
T Consensus 407 ~~~~~~~~~p~~ 418 (491)
T 4aps_A 407 GLSVTTKLAPKA 418 (491)
T ss_dssp HHHHHHHHTTTT
T ss_pred HHHHHHHhCCHH
Confidence 444555554433
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=65.59 E-value=68 Score=27.85 Aligned_cols=21 Identities=5% Similarity=-0.203 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhh-cC
Q 025279 94 VTCFSSATWKIFQAAVLKE-YP 114 (255)
Q Consensus 94 ~aa~~~a~~~vl~k~~~~~-~~ 114 (255)
...++..+......+..++ ..
T Consensus 62 ~~~~~~~~~~~~~g~l~dr~~g 83 (491)
T 4aps_A 62 IYASMVYLSGTIGGFVADRIIG 83 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 3455555666666666666 55
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=59.23 E-value=23 Score=30.86 Aligned_cols=43 Identities=9% Similarity=-0.100 Sum_probs=22.4
Q ss_pred hchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279 187 KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 229 (255)
Q Consensus 187 ~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~ 229 (255)
....++.+.+...+..-..-....+.|..+++.|+.+....++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~ 429 (445)
T 3l1l_A 387 YLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYN 429 (445)
T ss_dssp THHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345555555444332221223445677777888777665443
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=38.43 E-value=18 Score=23.80 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=10.0
Q ss_pred hhHHHHHHhhhhhhcccc
Q 025279 212 IGTVVIAFGFYAVIWAQG 229 (255)
Q Consensus 212 lG~~lI~~gv~l~~~~~~ 229 (255)
.++++.+.|++++..+|=
T Consensus 26 fA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 26 VAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHTTTC-
T ss_pred hHHHHHHHHHHHHHcCcc
Confidence 344555677777665543
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=34.81 E-value=2.3e+02 Score=24.64 Aligned_cols=20 Identities=0% Similarity=0.066 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhc-C
Q 025279 95 TCFSSATWKIFQAAVLKEY-P 114 (255)
Q Consensus 95 aa~~~a~~~vl~k~~~~~~-~ 114 (255)
..+...+......+..+++ .
T Consensus 63 ~~~~~~~~~~~~G~l~dr~~g 83 (524)
T 2xut_A 63 FVIGVYFFPLLGGWIADRFFG 83 (524)
T ss_dssp HHHHHHHTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 3444555566666667776 5
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=25.98 E-value=1.8e+02 Score=25.26 Aligned_cols=11 Identities=0% Similarity=0.048 Sum_probs=4.8
Q ss_pred HHHHHHhccCc
Q 025279 170 IIAWCLQKKGP 180 (255)
Q Consensus 170 ~~~~~l~~~~a 180 (255)
.+.+..+..++
T Consensus 426 ~~~~~~~~~p~ 436 (524)
T 2xut_A 426 GLEFAYSQAPK 436 (524)
T ss_dssp HTTTHHHHCCT
T ss_pred HHHHHHHhCcH
Confidence 33344444443
No 13
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=25.52 E-value=33 Score=22.31 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=7.6
Q ss_pred hHHHHHHhhhhhhcc
Q 025279 213 GTVVIAFGFYAVIWA 227 (255)
Q Consensus 213 G~~lI~~gv~l~~~~ 227 (255)
++++.+.|++++...
T Consensus 24 A~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 24 AGILFILGILIVLSR 38 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 344445566655543
No 14
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=25.40 E-value=2.4e+02 Score=21.86 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCCchhhhhhHHHHH--Hhhhhhhccc
Q 025279 195 VFMAVMFLGETPHLGSLIGTVVIA--FGFYAVIWAQ 228 (255)
Q Consensus 195 ~l~~~~~lgE~~~~~~~lG~~lI~--~gv~l~~~~~ 228 (255)
--+|..++++..=+.++.+..+.+ .|.+...+++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~ 162 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREE 162 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467888899998899999988764 4655544433
No 15
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=22.61 E-value=3.8e+02 Score=23.31 Aligned_cols=14 Identities=0% Similarity=0.273 Sum_probs=6.5
Q ss_pred hhHHHHHHhhhhhh
Q 025279 212 IGTVVIAFGFYAVI 225 (255)
Q Consensus 212 lG~~lI~~gv~l~~ 225 (255)
.++.+++.++....
T Consensus 450 ~~~~~~~~~i~~~~ 463 (511)
T 4djk_A 450 VVSFLVVLALPFIL 463 (511)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444454444
No 16
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.47 E-value=43 Score=21.53 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=9.0
Q ss_pred hhHHHHHHhhhhhhccc
Q 025279 212 IGTVVIAFGFYAVIWAQ 228 (255)
Q Consensus 212 lG~~lI~~gv~l~~~~~ 228 (255)
.++++.+.|++++..+|
T Consensus 24 fA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 24 FGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHHHHHHcCc
Confidence 34444556666665443
Done!