Query 025279
Match_columns 255
No_of_seqs 127 out of 1398
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 07:11:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025279.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025279hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 65.0 29 0.0021 27.3 12.4 27 156-182 350-376 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 54.8 37 0.0027 25.8 9.5 25 156-180 319-343 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 45.6 63 0.0046 25.1 16.0 34 95-129 68-101 (447)
4 d1iwga8 f.35.1.1 (A:513-566,A: 40.1 64 0.0047 23.6 10.4 52 168-219 71-122 (222)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 15.8 68 0.005 23.0 4.0 44 176-219 61-104 (199)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 10.6 67 0.0049 20.0 2.1 13 217-229 31-43 (91)
7 d1pv7a_ f.38.1.2 (A:) Lactose 10.2 3E+02 0.022 19.9 10.0 27 87-114 45-71 (417)
8 d2e74g1 f.23.26.1 (G:9-35) Pet 7.3 1.4E+02 0.01 13.8 2.7 19 87-105 3-21 (27)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 5.7 2.1E+02 0.015 14.4 2.9 20 84-103 16-35 (37)
10 d2iuba2 f.17.3.1 (A:286-349) M 4.8 2.2E+02 0.016 16.0 2.3 8 209-216 43-50 (64)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=65.02 E-value=29 Score=27.26 Aligned_cols=27 Identities=11% Similarity=-0.192 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcee
Q 025279 156 VIYAAIVGTVIRSSIIAWCLQKKGPVF 182 (255)
Q Consensus 156 ll~lgi~~s~~~~~~~~~~l~~~~a~~ 182 (255)
+...|..........+.+..+..+...
T Consensus 350 ~~~~g~~~~~~~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 350 MIVIGFLIYGPVMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 334444333334445556666655543
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=54.80 E-value=37 Score=25.81 Aligned_cols=25 Identities=0% Similarity=-0.141 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCc
Q 025279 156 VIYAAIVGTVIRSSIIAWCLQKKGP 180 (255)
Q Consensus 156 ll~lgi~~s~~~~~~~~~~l~~~~a 180 (255)
.+..|+......-..+.+..+..++
T Consensus 319 ~~l~g~~~~~~~~~~~~~~~~~~~~ 343 (417)
T d1pv7a_ 319 KTLHMFEVPFLLVGCFKYITSQFEV 343 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 3344443333333444455555554
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=45.64 E-value=63 Score=25.11 Aligned_cols=34 Identities=6% Similarity=-0.051 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Q 025279 95 TCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTI 129 (255)
Q Consensus 95 aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l 129 (255)
..+.+++......+..+++.. -.......+...+
T Consensus 68 ~~~~~~~~~~~~G~l~Dr~g~-r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 68 ISIAYGFSKFIMGSVSDRSNP-RVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHH
Confidence 445556666666666677662 3333333333333
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=40.15 E-value=64 Score=23.64 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=31.7
Q ss_pred HHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHH
Q 025279 168 SSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAF 219 (255)
Q Consensus 168 ~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~ 219 (255)
+.+.....+............-.-+.+.+++..+.+.+++....+|.++.++
T Consensus 71 ~liL~~~frS~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 71 FLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHTTCSSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhh
Confidence 3444444454444433333333334566677788999999999888777553
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=15.82 E-value=68 Score=23.01 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=24.9
Q ss_pred hccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHH
Q 025279 176 QKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAF 219 (255)
Q Consensus 176 ~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~ 219 (255)
+...+...........+........++|.+++.....+..++++
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 33333333334444444444445567788888877777666553
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=10.59 E-value=67 Score=20.03 Aligned_cols=13 Identities=8% Similarity=-0.409 Sum_probs=5.5
Q ss_pred HHHhhhhhhcccc
Q 025279 217 IAFGFYAVIWAQG 229 (255)
Q Consensus 217 I~~gv~l~~~~~~ 229 (255)
++.|+++...-|.
T Consensus 31 ~V~~~~~~~~~ry 43 (91)
T d1fftb2 31 PAILMAVGFAWKY 43 (91)
T ss_dssp HHHHHHHTTTTTT
T ss_pred HHHHHHHhhheee
Confidence 3445444443333
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=10.18 E-value=3e+02 Score=19.94 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025279 87 LGGLLLTVTCFSSATWKIFQAAVLKEYP 114 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~ 114 (255)
.|.+... ..+...+......+..+|+.
T Consensus 45 ~g~i~s~-~~l~~~i~~~~~G~l~Dr~g 71 (417)
T d1pv7a_ 45 TGIIFAA-ISLFSLLFQPLFGLLSDKLG 71 (417)
T ss_dssp HHHHHHH-HHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence 4544332 34444455555555555544
No 8
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.33 E-value=1.4e+02 Score=13.83 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 025279 87 LGGLLLTVTCFSSATWKIF 105 (255)
Q Consensus 87 ~G~~l~l~aa~~~a~~~vl 105 (255)
+|.+..-++.+.||.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 5677777778888876543
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.69 E-value=2.1e+02 Score=14.35 Aligned_cols=20 Identities=25% Similarity=0.281 Sum_probs=15.9
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 025279 84 NWALGGLLLTVTCFSSATWK 103 (255)
Q Consensus 84 ~~~~G~~l~l~aa~~~a~~~ 103 (255)
+..+|.++.+.-++.++.|.
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45689999988888888775
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.77 E-value=2.2e+02 Score=15.98 Aligned_cols=8 Identities=0% Similarity=0.036 Sum_probs=3.0
Q ss_pred hhhhhHHH
Q 025279 209 GSLIGTVV 216 (255)
Q Consensus 209 ~~~lG~~l 216 (255)
...++..+
T Consensus 43 ~~~~~~~~ 50 (64)
T d2iuba2 43 PVVLAVMG 50 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
Done!