BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025280
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F1D|A Chain A, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|B Chain B, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|C Chain C, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|D Chain D, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|E Chain E, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|F Chain F, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|G Chain G, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|H Chain H, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|I Chain I, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|J Chain J, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|K Chain K, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|L Chain L, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|M Chain M, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|N Chain N, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|O Chain O, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|P Chain P, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
Length = 207
Score = 303 bits (776), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 145/163 (88%), Positives = 158/163 (96%)
Query: 71 ASTSSAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDV 130
AS+SS++ GRIGEVKRVTKETNVSVKIN+DG+GVADSS+ IPFLDHMLDQLASHGLFDV
Sbjct: 1 ASSSSSMALGRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDV 60
Query: 131 HVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSG 190
HVRATGD+HIDDHHTNED+ LAIGTALL+ALG+RKGINRFGDFTAPLDEALIHVSLDLSG
Sbjct: 61 HVRATGDVHIDDHHTNEDIALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSG 120
Query: 191 RPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQL 233
RP+L Y+L+IPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQL
Sbjct: 121 RPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQL 163
>pdb|1RHY|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Dehydratase
pdb|1RHY|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Dehydratase
Length = 202
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 98/161 (60%), Gaps = 5/161 (3%)
Query: 79 SGRIGEVKRVTKETNVSVKINVDG-SGVADS----STCIPFLDHMLDQLASHGLFDVHVR 133
S RI V+R T ET++S I++D GV + ST I FLDHM LA HG + ++
Sbjct: 2 SERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQ 61
Query: 134 ATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPH 193
GD+HIDDHHT ED LA+G A +ALG+RKGI R+G APLDE+L +D+S RP+
Sbjct: 62 CKGDLHIDDHHTAEDCALALGEAFKKALGERKGIKRYGYAYAPLDESLSRAVIDISSRPY 121
Query: 194 LNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLK 234
L ++VG T++V H QS +G+TLHI ++
Sbjct: 122 FMCHLPFTREKVGDLSTEMVSHLLQSFAFAAGVTLHIDSIR 162
>pdb|2AE8|A Chain A, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|B Chain B, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|C Chain C, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|D Chain D, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|E Chain E, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|F Chain F, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
Length = 221
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 82 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHID 141
I + +R T ET +++ I+ D S + +T + FL+H L H +++ A GDI +D
Sbjct: 31 IYQKQRNTAETQLNISISDDQSP-SHINTGVGFLNHXLTLFTFHSGLSLNIEAQGDIDVD 89
Query: 142 DHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIP 201
DHH ED+G+ IG LL+ + D+K R+G P DE L V +D+SGRP+L+++ +
Sbjct: 90 DHHVTEDIGIVIGQLLLEXIKDKKHFVRYGTXYIPXDETLARVVVDISGRPYLSFNASLS 149
Query: 202 TQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLKRGST 238
++VGT+DT+LVE FF+++V + +T HI ++ G+T
Sbjct: 150 KEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNT 186
>pdb|1HM2|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HM3|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HMU|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-oligosaccharide Complexes And
Mutagenesis
pdb|1HMW|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-oligosaccharide Complexes And
Mutagenesis
Length = 700
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 159 QALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQ 218
QALG+ + R+G PLDEAL+H + R P ++ G T + H+F
Sbjct: 135 QALGEMLILMRYG--KKPLDEALVHKLTERMKRGE-------PEKKTGANKTDIALHYFY 185
Query: 219 SLVNTSGMTL 228
+ TS L
Sbjct: 186 RALLTSDEAL 195
>pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacterium Heparinum
Length = 678
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 159 QALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQ 218
QALG+ + R+G PLDEAL+H + R P ++ G T + H+F
Sbjct: 113 QALGEMLILMRYG--KKPLDEALVHKLTERMKRGE-------PEKKTGANKTDIALHYFY 163
Query: 219 SLVNTSGMTL 228
+ TS L
Sbjct: 164 RALLTSDEAL 173
>pdb|3PE7|A Chain A, Oligogalacturonate Lyase In Complex With Manganese
Length = 388
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 151 LAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDL---------QIP 201
L + T + L + +G N FG F +P D+AL +V GR + DL Q+P
Sbjct: 65 LDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK---DGRNLMRVDLATLEENVVYQVP 121
Query: 202 TQRVG 206
+ VG
Sbjct: 122 AEWVG 126
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 108 SSTCIPFLDHMLDQLASHGLFDV 130
+ T IP +D ++DQ A HGL +V
Sbjct: 397 AETVIPMMDAVIDQCAEHGLDEV 419
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 108 SSTCIPFLDHMLDQLASHGLFDV 130
+ T IP +D ++DQ A HGL +V
Sbjct: 152 AETVIPMMDAVIDQCAEHGLDEV 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,590,422
Number of Sequences: 62578
Number of extensions: 260883
Number of successful extensions: 555
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 11
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)