Query 025280
Match_columns 255
No_of_seqs 179 out of 1031
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 07:12:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rhy_A IGPD, imidazole glycero 100.0 2.2E-90 7.4E-95 606.5 19.5 176 78-253 1-181 (202)
2 2f1d_A IGPD 1, imidazoleglycer 100.0 2.3E-90 7.7E-95 608.1 18.4 175 79-253 9-183 (207)
3 2ae8_A IGPD, imidazoleglycerol 100.0 2.9E-88 9.9E-93 598.9 15.4 174 79-253 28-201 (221)
4 1rhy_A IGPD, imidazole glycero 97.3 0.00036 1.2E-08 61.4 6.8 81 80-163 96-187 (202)
5 2ae8_A IGPD, imidazoleglycerol 97.3 0.00044 1.5E-08 61.6 7.2 80 80-162 116-206 (221)
6 2f1d_A IGPD 1, imidazoleglycer 97.3 0.00048 1.7E-08 60.8 6.9 79 81-162 99-188 (207)
7 1rlz_A DHS, deoxyhypusine synt 54.4 4.9 0.00017 38.1 1.8 75 86-181 91-176 (369)
8 2ja9_A Exosome complex exonucl 49.2 8.8 0.0003 32.3 2.4 41 117-159 112-152 (175)
9 3bbn_I Ribosomal protein S9; s 35.7 11 0.00036 33.1 0.8 51 83-137 74-137 (197)
10 2z0s_A Probable exosome comple 34.9 23 0.00077 30.6 2.8 42 117-160 168-209 (235)
11 2ght_A Carboxy-terminal domain 25.8 2.2E+02 0.0075 22.8 7.2 75 172-251 17-93 (181)
12 2qg8_A Acyl carrier protein sy 25.2 59 0.002 26.6 3.6 42 152-197 70-111 (163)
13 2ba0_A Archeal exosome RNA bin 23.5 34 0.0012 29.5 1.9 74 82-160 110-196 (229)
14 2hhl_A CTD small phosphatase-l 21.7 2.7E+02 0.0092 22.7 7.1 75 172-251 30-106 (195)
No 1
>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases, histidine biosynthesis, LEFT-handed B-A-B CROS motif, gene duplication; 2.30A {Filobasidiella neoformans} SCOP: d.14.1.9 d.14.1.9
Probab=100.00 E-value=2.2e-90 Score=606.50 Aligned_cols=176 Identities=40% Similarity=0.658 Sum_probs=167.3
Q ss_pred CCCceEEEEeeeCCeEEEEEEEeCCCc-----eeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCccchhhhhh
Q 025280 78 DSGRIGEVKRVTKETNVSVKINVDGSG-----VADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLA 152 (255)
Q Consensus 78 ~~~R~a~i~R~TkET~I~v~LnLDG~G-----~~~I~TGIgFlDHML~~~a~Hg~fdL~i~a~GDl~VD~HHtVEDvGI~ 152 (255)
|+.|+++|+|+|+||+|+|+|||||+| +++|+||||||||||+|||+||+|||+|+|+||++||+|||||||||+
T Consensus 1 ~~~R~a~v~R~T~ET~I~v~l~LDG~g~~~~~~~~i~TGigFlDHML~~la~Hg~~dL~v~a~GDl~iD~HHtvED~gI~ 80 (202)
T 1rhy_A 1 MSERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQCKGDLHIDDHHTAEDCALA 80 (202)
T ss_dssp -CCCEEEEEEECSSCEEEEEEESCCCTTTCCCCEEEECSCHHHHHHHHHHHHHTTCEEEEEEESCC------CCHHHHHH
T ss_pred CCceeEEEEecCCceEEEEEEEeCCCCCcccceeeeeCCCcHHHHHHHHHHHHcCCceEEEEecCCccccCccHHHhhhh
Confidence 356999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccccceecceecccccceeEEEEEcCCCceeEEeccCCcceecccccccHHHHHHHHHHhcCCeEEEEe
Q 025280 153 IGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQ 232 (255)
Q Consensus 153 LG~Al~~ALGdK~GI~RyG~a~vPMDEALa~vavDlSGRpylv~~~~f~~~~iG~f~teLv~eFf~sfa~~a~~TLHI~~ 232 (255)
|||||+||||||+||+|||++++||||||++|+||||||||++|+++|++++||+|++||++|||+|||++++|||||++
T Consensus 81 LG~Al~~ALGdk~GI~RyG~a~vPMDEaL~~v~vDlSgRpylv~~~~~~~~~iG~~~tel~~~Ff~s~a~~a~~tLHi~~ 160 (202)
T 1rhy_A 81 LGEAFKKALGERKGIKRYGYAYAPLDESLSRAVIDISSRPYFMCHLPFTREKVGDLSTEMVSHLLQSFAFAAGVTLHIDS 160 (202)
T ss_dssp HHHHHHHHHTTCTTCCCEEEEEEEETTEEEEEEEECSSCCEEEEECCCCSSEETTEETHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHhcCccccceeecccccccceeeEEEEEcCCCceEEEccCCCCcccCCCChHHHHHHHHHHHhhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhHHHHHHHHHhhhcc
Q 025280 233 LKRGSTTILILHGIHGLGMGF 253 (255)
Q Consensus 233 l~G~N~HH~iEA~FKAlG~Al 253 (255)
+||+|+||++||+|||||+||
T Consensus 161 l~G~N~HH~~Ea~FKA~arAL 181 (202)
T 1rhy_A 161 IRGENNHHIAESAFKALALAI 181 (202)
T ss_dssp EECSSHHHHHHHHHHHHHHHH
T ss_pred EecCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999997
No 2
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Probab=100.00 E-value=2.3e-90 Score=608.09 Aligned_cols=175 Identities=81% Similarity=1.193 Sum_probs=172.8
Q ss_pred CCceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCccchhhhhhHHHHHH
Q 025280 79 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALL 158 (255)
Q Consensus 79 ~~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFlDHML~~~a~Hg~fdL~i~a~GDl~VD~HHtVEDvGI~LG~Al~ 158 (255)
..|+++|+|+|+||+|+|+|||||+|+++|+||||||||||+||++||+|||+|+|+||++||+|||||||||+|||||+
T Consensus 9 ~~R~a~v~R~T~ET~I~v~l~LDG~G~~~i~TGigFlDHML~~~a~Hg~~dL~v~a~GDl~iD~HHtvEDvgI~LG~Al~ 88 (207)
T 2f1d_A 9 LGRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDIALAIGTALL 88 (207)
T ss_dssp -CCEEEEEEECSSCEEEEEEETTCCCCEEEECSCHHHHHHHHHHHHHHTCEEEEEEECCTTTCSHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEcCCcEEEEEEEEeCCCCceeeeCCChHHHHHHHHHHHHcCCceEEEEecCccccCCCchhhhhhhHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCccccceecceecccccceeEEEEEcCCCceeEEeccCCcceecccccccHHHHHHHHHHhcCCeEEEEecccCCh
Q 025280 159 QALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLKRGST 238 (255)
Q Consensus 159 ~ALGdK~GI~RyG~a~vPMDEALa~vavDlSGRpylv~~~~f~~~~iG~f~teLv~eFf~sfa~~a~~TLHI~~l~G~N~ 238 (255)
||||||+||+|||++++||||||++|+|||||||||+|+++|++++||+|++||++|||+|||++++|||||+++||+|+
T Consensus 89 ~ALGdk~GI~RyG~a~vPMDEaLa~v~vDlSGRpylv~~~~~~~~~iG~~~tel~~~Ff~s~a~~a~~tLHi~~l~G~N~ 168 (207)
T 2f1d_A 89 KALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGENS 168 (207)
T ss_dssp HHHTTCCSBCCBCCEEEEETTEEEEEEEECCSSCEEEEECCCSSSEETTEETTHHHHHHHHHHHHHTCEEEEEEEECCCH
T ss_pred HHhcCccccceeEeeeecccceeeEEEEEcCCCCeEEEecccCccccCCCchhhHHHHHHHHHhcCCCEEEEEeeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcc
Q 025280 239 TILILHGIHGLGMGF 253 (255)
Q Consensus 239 HH~iEA~FKAlG~Al 253 (255)
||++||+|||||+||
T Consensus 169 HH~~Ea~FKA~arAL 183 (207)
T 2f1d_A 169 HHIIEATFKAFARAL 183 (207)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999997
No 3
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta sandwich, duplication of A half-domain; 2.01A {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Probab=100.00 E-value=2.9e-88 Score=598.89 Aligned_cols=174 Identities=35% Similarity=0.620 Sum_probs=163.2
Q ss_pred CCceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCccchhhhhhHHHHHH
Q 025280 79 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALL 158 (255)
Q Consensus 79 ~~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFlDHML~~~a~Hg~fdL~i~a~GDl~VD~HHtVEDvGI~LG~Al~ 158 (255)
+.|+++|+|+|+||+|+|+|||| +|+++|+||||||||||+|||+||+|||+|+|+||++||+|||||||||||||||+
T Consensus 28 ~~R~a~v~R~T~ET~I~v~l~LD-~G~~~i~TGigFlDHML~~la~Hg~~dL~v~a~GDl~iD~HHTvEDvgI~LGqAl~ 106 (221)
T 2ae8_A 28 NAMIYQKQRNTAETQLNISISDD-QSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLL 106 (221)
T ss_dssp --CEEEEEC----CEEEEEEESS-CCCCEEECSCHHHHHHHHHHHHHHCCEEEEEEECC----HHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEEeCCcEEEEEEEEeC-CCcceecCCCcHHHHHHHHHHHHcCCceEEEEeeCCcccCCccHHHHHhHHHHHHH
Confidence 45999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCccccceecceecccccceeEEEEEcCCCceeEEeccCCcceecccccccHHHHHHHHHHhcCCeEEEEecccCCh
Q 025280 159 QALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLKRGST 238 (255)
Q Consensus 159 ~ALGdK~GI~RyG~a~vPMDEALa~vavDlSGRpylv~~~~f~~~~iG~f~teLv~eFf~sfa~~a~~TLHI~~l~G~N~ 238 (255)
||||||+||+|||++++||||||++|+||||||||++|+++|++++||+|++||++|||+|||++++|||||+++||+|+
T Consensus 107 ~ALGdk~GI~RyG~a~vPMDEaLa~v~vDlSGRpylv~~~~~~~~~iG~~~telv~hFf~s~a~~a~~tLHi~~l~G~N~ 186 (221)
T 2ae8_A 107 EMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNT 186 (221)
T ss_dssp HHHHHCCSBCCEEEEEEEETTEEEEEEEECCSCCEEEEECCCSCSEETTEETTHHHHHHHHHHHHTTCEEEEEEEECSCH
T ss_pred HHhcCcccCceeecceecccceeEEEEEEcCCCceEEEecccCCcccCCCChHHHHHHHHHHHhcCCceEEEEeeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcc
Q 025280 239 TILILHGIHGLGMGF 253 (255)
Q Consensus 239 HH~iEA~FKAlG~Al 253 (255)
||++||+|||||+||
T Consensus 187 HH~~EA~FKA~arAL 201 (221)
T 2ae8_A 187 HHEIEAIFKAFSRAL 201 (221)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999997
No 4
>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases, histidine biosynthesis, LEFT-handed B-A-B CROS motif, gene duplication; 2.30A {Filobasidiella neoformans} SCOP: d.14.1.9 d.14.1.9
Probab=97.34 E-value=0.00036 Score=61.38 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=69.3
Q ss_pred CceEEEEeeeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEE-ecCccccCCccchh
Q 025280 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRA-TGDIHIDDHHTNED 148 (255)
Q Consensus 80 ~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIg----------FlDHML~~~a~Hg~fdL~i~a-~GDl~VD~HHtVED 148 (255)
.|-+...--=-|+-+.+.|++.|..-...+-+.+ -+.|.+..|+.++++.|.|++ +|+ ++||.+|-
T Consensus 96 ~RyG~a~vPMDEaL~~v~vDlSgRpylv~~~~~~~~~iG~~~tel~~~Ff~s~a~~a~~tLHi~~l~G~---N~HH~~Ea 172 (202)
T 1rhy_A 96 KRYGYAYAPLDESLSRAVIDISSRPYFMCHLPFTREKVGDLSTEMVSHLLQSFAFAAGVTLHIDSIRGE---NNHHIAES 172 (202)
T ss_dssp CCEEEEEEEETTEEEEEEEECSSCCEEEEECCCCSSEETTEETHHHHHHHHHHHHHHTCEEEEEEEECS---SHHHHHHH
T ss_pred ceeecccccccceeeEEEEEcCCCceEEEccCCCCcccCCCChHHHHHHHHHHHhhCCCeEEEEEEecC---CcHHHHHH
Confidence 3777666678999999999999988766654432 688999999999999999996 785 67999999
Q ss_pred hhhhHHHHHHHhcCC
Q 025280 149 VGLAIGTALLQALGD 163 (255)
Q Consensus 149 vGI~LG~Al~~ALGd 163 (255)
+--++|+||++|+..
T Consensus 173 ~FKA~arALr~A~~~ 187 (202)
T 1rhy_A 173 AFKALALAIRMAISR 187 (202)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999964
No 5
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta sandwich, duplication of A half-domain; 2.01A {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Probab=97.32 E-value=0.00044 Score=61.63 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=68.8
Q ss_pred CceEEEEeeeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEE-ecCccccCCccchh
Q 025280 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRA-TGDIHIDDHHTNED 148 (255)
Q Consensus 80 ~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIg----------FlDHML~~~a~Hg~fdL~i~a-~GDl~VD~HHtVED 148 (255)
.|-+...--=-|+-+.+.|++.|.+-...+-+.+ -+.|.+..|+.++++.|.|++ +|+ ++||.+|-
T Consensus 116 ~RyG~a~vPMDEaLa~v~vDlSGRpylv~~~~~~~~~iG~~~telv~hFf~s~a~~a~~tLHi~~l~G~---N~HH~~EA 192 (221)
T 2ae8_A 116 VRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGG---NTHHEIEA 192 (221)
T ss_dssp CCEEEEEEEETTEEEEEEEECCSCCEEEEECCCSCSEETTEETTHHHHHHHHHHHHTTCEEEEEEEECS---CHHHHHHH
T ss_pred ceeecceecccceeEEEEEEcCCCceEEEecccCCcccCCCChHHHHHHHHHHHhcCCceEEEEeeecC---CcHHHHHH
Confidence 3666666678999999999999988766554432 689999999999999999999 786 67999999
Q ss_pred hhhhHHHHHHHhcC
Q 025280 149 VGLAIGTALLQALG 162 (255)
Q Consensus 149 vGI~LG~Al~~ALG 162 (255)
+--++|+||++|+.
T Consensus 193 ~FKA~arALr~A~~ 206 (221)
T 2ae8_A 193 IFKAFSRALGIALT 206 (221)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999986
No 6
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Probab=97.27 E-value=0.00048 Score=60.80 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=66.8
Q ss_pred ceEEEEeeeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEE-ecCccccCCccchhh
Q 025280 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRA-TGDIHIDDHHTNEDV 149 (255)
Q Consensus 81 R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIg----------FlDHML~~~a~Hg~fdL~i~a-~GDl~VD~HHtVEDv 149 (255)
|-+...--=-|+-+.+.|+|.|.+-...+-+.+ -+.|.+..|+.++++.|.|++ .|+ ++||.+|-+
T Consensus 99 RyG~a~vPMDEaLa~v~vDlSGRpylv~~~~~~~~~iG~~~tel~~~Ff~s~a~~a~~tLHi~~l~G~---N~HH~~Ea~ 175 (207)
T 2f1d_A 99 RFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGE---NSHHIIEAT 175 (207)
T ss_dssp CBCCEEEEETTEEEEEEEECCSSCEEEEECCCSSSEETTEETTHHHHHHHHHHHHHTCEEEEEEEECC---CHHHHHHHH
T ss_pred eeEeeeecccceeeEEEEEcCCCCeEEEecccCccccCCCchhhHHHHHHHHHhcCCCEEEEEeeecC---CcHHHHHHH
Confidence 555555567899999999999988766654432 689999999999999999996 786 679999999
Q ss_pred hhhHHHHHHHhcC
Q 025280 150 GLAIGTALLQALG 162 (255)
Q Consensus 150 GI~LG~Al~~ALG 162 (255)
--++|+||++|+.
T Consensus 176 FKA~arALr~A~~ 188 (207)
T 2f1d_A 176 FKAFARALRQATE 188 (207)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999986
No 7
>1rlz_A DHS, deoxyhypusine synthase; rossman fold, NAD cofactor, spermid transferase; HET: NAD; 2.15A {Homo sapiens} SCOP: c.31.1.1 PDB: 1roz_A* 1rqd_A* 1dhs_A*
Probab=54.37 E-value=4.9 Score=38.06 Aligned_cols=75 Identities=25% Similarity=0.388 Sum_probs=52.7
Q ss_pred EeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCccchhhhhhHHH----------
Q 025280 86 KRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGT---------- 155 (255)
Q Consensus 86 ~R~TkET~I~v~LnLDG~G~~~I~TGIgFlDHML~~~a~Hg~fdL~i~a~GDl~VD~HHtVEDvGI~LG~---------- 155 (255)
.|+.+++.|-+.+ -| .-|++|++ ..+.-|.+|+.+|+-|.--|-++ ||+--|||.
T Consensus 91 ~~~~~~~tIFLg~--tg---nmissGlR---~iI~~Li~~~~VDvIVTTgggie-------hD~ik~lg~~y~G~f~~dd 155 (369)
T 1rlz_A 91 RRPLTSCTIFLGY--TS---NLISSGIR---ETIRYLVQHNMVDVLVTTAGGVE-------EDLIKCLAPTYLGEFSLRG 155 (369)
T ss_dssp ----CSSEEEEEE--CT---HHHHSTHH---HHHHHHHHTTCCSEEEECHHHHH-------HHHHTTTSCCEECCTTCCH
T ss_pred hcccCCCeEEEEc--cc---cccchhHH---HHHHHHHHcCCeeEEEccCCchH-------HHHHHHhccceecCCCCCh
Confidence 3444566664444 34 24788886 88999999999999998888654 677666653
Q ss_pred -HHHHhcCCccccceecceecccccce
Q 025280 156 -ALLQALGDRKGINRFGDFTAPLDEAL 181 (255)
Q Consensus 156 -Al~~ALGdK~GI~RyG~a~vPMDEAL 181 (255)
.|+ ++||+|.|.-++|- |.+
T Consensus 156 ~~Lr-----~~ginRIgn~~ip~-e~y 176 (369)
T 1rlz_A 156 KELR-----ENGINRIGNLLVPN-ENY 176 (369)
T ss_dssp HHHH-----HTTEEEETTEEEET-HHH
T ss_pred HHHH-----HcCCCcccceeecc-HHH
Confidence 333 67999999999997 444
No 8
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=49.17 E-value=8.8 Score=32.26 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCcceEEEEecCccccCCccchhhhhhHHHHHHH
Q 025280 117 HMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQ 159 (255)
Q Consensus 117 HML~~~a~Hg~fdL~i~a~GDl~VD~HHtVEDvGI~LG~Al~~ 159 (255)
|||+.+.++.+|++.|=..|=+||+... ++.-+++++||++
T Consensus 112 ~~l~~l~~~~~~ei~vG~NG~IWi~~~~--~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 112 PLLKVLAAHTKFEVAIGLNGKIWVKCEE--LSNTLACYRTIME 152 (175)
T ss_dssp CHHHHHHTTCCCEEEEETTTEEEEECSS--HHHHHHHHHHHHH
T ss_pred chHHhhhccCCeEEEEECCcEEEEecCC--HHHHHHHHHHHHH
Confidence 5999999999999999999999999753 3667788889887
No 9
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=35.70 E-value=11 Score=33.10 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=30.8
Q ss_pred EEEEeeeCCeEEEEEEEeCCCceeeeecCCccHH-------HH------HHHHHhhcCcceEEEEecC
Q 025280 83 GEVKRVTKETNVSVKINVDGSGVADSSTCIPFLD-------HM------LDQLASHGLFDVHVRATGD 137 (255)
Q Consensus 83 a~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFlD-------HM------L~~~a~Hg~fdL~i~a~GD 137 (255)
+.-+|||.=-. |.|. .|+|++.|+ |.++-+ ++ |...-.-+.||+.|+++|-
T Consensus 74 ~tGRRKtAvAr--V~l~-~G~G~I~VN-g~~l~~YF~~~~~~~~~v~~PL~l~~~~~k~DI~v~V~GG 137 (197)
T 3bbn_I 74 GTGRRKCAIAR--VVLQ-EGTGKFIIN-YRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGG 137 (197)
T ss_dssp CCCEETTEEEE--EEEE-ESSCCEEET-TEEHHHHSCSCCGGGTTTSHHHHTTTCTTTEEEEEEEESS
T ss_pred EEeeCCceEEE--EEEE-cCceeEEEC-CCcHHHHcCccHHHHHHHHHHHHHhCccCceeEEEEEecC
Confidence 44566664333 4443 699998874 555322 21 2223346899999999983
No 10
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=34.95 E-value=23 Score=30.60 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=35.4
Q ss_pred HHHHHHHhhcCcceEEEEecCccccCCccchhhhhhHHHHHHHh
Q 025280 117 HMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQA 160 (255)
Q Consensus 117 HML~~~a~Hg~fdL~i~a~GDl~VD~HHtVEDvGI~LG~Al~~A 160 (255)
+||+.|.++.+|++.|-..|-+||+.. .+..-+.+++||.+.
T Consensus 168 ~~l~~l~~~~~~~i~vG~NG~IWi~~~--~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 168 SMLKTLEEKTECKIFVARNGRIHLECP--NEDLEAIAVMAIKII 209 (235)
T ss_dssp HHHHHHHHHHCCEEEEETTTEEEEECS--CHHHHHHHHHHHHHH
T ss_pred hHHHHhcccCCeEEEEeCCCEEEEecC--CHHHHHHHHHHHHHH
Confidence 799999999999999999999999975 344567788898865
No 11
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A
Probab=25.82 E-value=2.2e+02 Score=22.79 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=41.4
Q ss_pred ceecccccceeEEEEEcCCCceeEEeccCCcce--ecccccccHHHHHHHHHHhcCCeEEEEecccCChhHHHHHHHHHh
Q 025280 172 DFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQR--VGTYDTQLVEHFFQSLVNTSGMTLHIRQLKRGSTTILILHGIHGL 249 (255)
Q Consensus 172 ~a~vPMDEALa~vavDlSGRpylv~~~~f~~~~--iG~f~teLv~eFf~sfa~~a~~TLHI~~l~G~N~HH~iEA~FKAl 249 (255)
.-++=|||+|+....+=...+-+.+..++.... ..-.--.-+++|++.++.. +.++|. .. ....-+|.+.+.+
T Consensus 17 ~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~~~~~~~~v~~rPg~~efL~~l~~~--~~i~I~--T~-~~~~~a~~vl~~l 91 (181)
T 2ght_A 17 CVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL--FECVLF--TA-SLAKYADPVADLL 91 (181)
T ss_dssp EEEECCBTTTEEEESSCCSSCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH--SEEEEE--CS-SCHHHHHHHHHHH
T ss_pred EEEECCCCCeECCcccCCCCccceeeeeeCCeeEEEEEEeCCCHHHHHHHHHhC--CCEEEE--cC-CCHHHHHHHHHHH
Confidence 367889999988753211111112222211110 1112233589999999986 667663 22 3345688888887
Q ss_pred hh
Q 025280 250 GM 251 (255)
Q Consensus 250 G~ 251 (255)
+.
T Consensus 92 d~ 93 (181)
T 2ght_A 92 DK 93 (181)
T ss_dssp CT
T ss_pred CC
Confidence 75
No 12
>2qg8_A Acyl carrier protein synthase PY06285; malaria, 3'5'ADP, SG structural genomics consortium, transferase; HET: A3P; 2.00A {Plasmodium yoelii yoelii}
Probab=25.22 E-value=59 Score=26.62 Aligned_cols=42 Identities=24% Similarity=0.556 Sum_probs=25.7
Q ss_pred hHHHHHHHhcCCccccceecceecccccceeEEEEEcCCCceeEEe
Q 025280 152 AIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYD 197 (255)
Q Consensus 152 ~LG~Al~~ALGdK~GI~RyG~a~vPMDEALa~vavDlSGRpylv~~ 197 (255)
+.=+|+.||||. |+...+..-+++.| +++.-|=.|||++.+.
T Consensus 70 AAKEA~~KAlGt--Gi~~~~~~~~~~~d--IeI~~d~~G~P~v~l~ 111 (163)
T 2qg8_A 70 AAKEAILKSMGR--GLSSISKYGLSMND--IEIKNDKYGKPHVYLY 111 (163)
T ss_dssp HHHHHHHHHTTC--CBC-----CBCGGG--EEEEECTTSCEEEEEC
T ss_pred HHHHHHHHHhcC--CCcccccCCccccE--EEEEECCCCCEEEEEC
Confidence 345788999984 56431112245555 4566688899998764
No 13
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=23.49 E-value=34 Score=29.54 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=49.4
Q ss_pred eEEEEeeeCCeEEEEEEEeCCCceeeeecCC---------cc----HHHHHHHHHhhcCcceEEEEecCccccCCccchh
Q 025280 82 IGEVKRVTKETNVSVKINVDGSGVADSSTCI---------PF----LDHMLDQLASHGLFDVHVRATGDIHIDDHHTNED 148 (255)
Q Consensus 82 ~a~i~R~TkET~I~v~LnLDG~G~~~I~TGI---------gF----lDHML~~~a~Hg~fdL~i~a~GDl~VD~HHtVED 148 (255)
.|+|.....+-++.+++. +.+-..+..|+ +- -..||+.|.++.+|++.|-+.|-+||+.. +.
T Consensus 110 ~arVi~v~~~~~i~LS~r--~~~lG~L~~G~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~---~~ 184 (229)
T 2ba0_A 110 IAKVLNIDPKMKVTLTMK--DRICRPIRFGRIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGLIWVNGD---RR 184 (229)
T ss_dssp EEEEEEECTTCCEEEECC--SSSCEEESSSEEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTTSEEEEESC---HH
T ss_pred EEEEEEECCCCcEEEEEc--cccCCcccCCEEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECCcEEEEeCC---ch
Confidence 566776666656666553 33322233331 11 13599999999999999999999999942 22
Q ss_pred hhhhHHHHHHHh
Q 025280 149 VGLAIGTALLQA 160 (255)
Q Consensus 149 vGI~LG~Al~~A 160 (255)
.-+.+++|+++.
T Consensus 185 ~~~~~~~ai~~~ 196 (229)
T 2ba0_A 185 KVSIAEEAIYLI 196 (229)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 567788888754
No 14
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}
Probab=21.73 E-value=2.7e+02 Score=22.73 Aligned_cols=75 Identities=17% Similarity=0.102 Sum_probs=41.3
Q ss_pred ceecccccceeEEEEEcCCCceeEEeccCCcce--ecccccccHHHHHHHHHHhcCCeEEEEecccCChhHHHHHHHHHh
Q 025280 172 DFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQR--VGTYDTQLVEHFFQSLVNTSGMTLHIRQLKRGSTTILILHGIHGL 249 (255)
Q Consensus 172 ~a~vPMDEALa~vavDlSGRpylv~~~~f~~~~--iG~f~teLv~eFf~sfa~~a~~TLHI~~l~G~N~HH~iEA~FKAl 249 (255)
..++=|||+|+....+=...+-+.+...+.... +.-.--.-+.+|++.+... +.+.|. .. ....-+|.+.+.+
T Consensus 30 ~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~g~~~~~~v~~RPgv~efL~~l~~~--~~i~I~--Ts-s~~~~a~~vl~~l 104 (195)
T 2hhl_A 30 CVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQL--FECVLF--TA-SLAKYADPVADLL 104 (195)
T ss_dssp EEEECCBTTTEEEESSCCTTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH--SEEEEE--CS-SCHHHHHHHHHHH
T ss_pred EEEEccccceEcccccCCCCccceeeeecCCceeeEEEEeCcCHHHHHHHHHcC--CeEEEE--cC-CCHHHHHHHHHHh
Confidence 367889999988753211111111222111110 1111224599999999986 666653 22 3345688888888
Q ss_pred hh
Q 025280 250 GM 251 (255)
Q Consensus 250 G~ 251 (255)
+.
T Consensus 105 d~ 106 (195)
T 2hhl_A 105 DR 106 (195)
T ss_dssp CC
T ss_pred CC
Confidence 75
Done!