RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025280
(255 letters)
>d2f1da1 d.14.1.9 (A:10-95) Imidazole glycerol phosphate dehydratase
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 124 bits (313), Expect = 3e-37
Identities = 77/86 (89%), Positives = 84/86 (97%)
Query: 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIH 139
GRIGEVKRVTKETNVSVKIN+DG+GVADSS+ IPFLDHMLDQLASHGLFDVHVRATGD+H
Sbjct: 1 GRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVH 60
Query: 140 IDDHHTNEDVGLAIGTALLQALGDRK 165
IDDHHTNED+ LAIGTALL+ALG+RK
Sbjct: 61 IDDHHTNEDIALAIGTALLKALGERK 86
>d2ae8a1 d.14.1.9 (A:1-84) Imidazole glycerol phosphate dehydratase
{Staphylococcus aureus [TaxId: 1280]}
Length = 84
Score = 113 bits (285), Expect = 4e-33
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 82 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHID 141
I + +R T ET +++ I+ D + +T + FL+HML H +++ A GDI +D
Sbjct: 2 IYQKQRNTAETQLNISIS-DDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVD 60
Query: 142 DHHTNEDVGLAIGTALLQALGDRK 165
DHH ED+G+ IG LL+ + D+K
Sbjct: 61 DHHVTEDIGIVIGQLLLEMIKDKK 84
>d1rhya1 d.14.1.9 (A:2-93) Imidazole glycerol phosphate dehydratase
{Fungus (Filobasidiella neoformans) [TaxId: 5207]}
Length = 92
Score = 112 bits (282), Expect = 1e-32
Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Query: 79 SGRIGEVKRVTKETNVSVKINVD-----GSGVADSSTCIPFLDHMLDQLASHGLFDVHVR 133
S RI V+R T ET++S I++D + ST I FLDHM LA HG + ++
Sbjct: 1 SERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQ 60
Query: 134 ATGDIHIDDHHTNEDVGLAIGTALLQALGDRK 165
GD+HIDDHHT ED LA+G A +ALG+RK
Sbjct: 61 CKGDLHIDDHHTAEDCALALGEAFKKALGERK 92
>d2f1da2 d.14.1.9 (A:96-192) Imidazole glycerol phosphate
dehydratase {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 97
Score = 93.7 bits (233), Expect = 3e-25
Identities = 64/69 (92%), Positives = 67/69 (97%)
Query: 166 GINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSG 225
GINRFGDFTAPLDEALIHVSLDLSGRP+L Y+L+IPTQRVGTYDTQLVEHFFQSLVNTSG
Sbjct: 1 GINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSG 60
Query: 226 MTLHIRQLK 234
MTLHIRQL
Sbjct: 61 MTLHIRQLA 69
Score = 25.9 bits (57), Expect = 2.3
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 91 ETNVSVKINVDGSGVADSSTCIPF----------LDHMLDQLASHGLFDVHVRA-TGDIH 139
E + V +++ G + IP ++H L + +H+R G+
Sbjct: 14 EALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGE-- 71
Query: 140 IDDHHTNEDVGLAIGTALLQAL 161
+ HH E A AL QA
Sbjct: 72 -NSHHIIEATFKAFARALRQAT 92
>d1rhya2 d.14.1.9 (A:94-187) Imidazole glycerol phosphate
dehydratase {Fungus (Filobasidiella neoformans) [TaxId:
5207]}
Length = 94
Score = 89.9 bits (223), Expect = 8e-24
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 166 GINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSG 225
GI R+G APLDE+L +D+S RP+ L ++VG T++V H QS +G
Sbjct: 1 GIKRYGYAYAPLDESLSRAVIDISSRPYFMCHLPFTREKVGDLSTEMVSHLLQSFAFAAG 60
Query: 226 MTLHIRQLK 234
+TLHI ++
Sbjct: 61 VTLHIDSIR 69
Score = 27.1 bits (60), Expect = 0.74
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 117 HMLDQLASHGLFDVHVRA-TGDIHIDDHHTNEDVGLAIGTALLQAL 161
H+L A +H+ + G+ ++HH E A+ A+ A+
Sbjct: 50 HLLQSFAFAAGVTLHIDSIRGE---NNHHIAESAFKALALAIRMAI 92
>d2ae8a2 d.14.1.9 (A:85-179) Imidazole glycerol phosphate
dehydratase {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 86.4 bits (214), Expect = 2e-22
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 167 INRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGM 226
R+G P+DE L V +D+SGRP+L+++ + ++VGT+DT+LVE FF+++V + +
Sbjct: 2 FVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARL 61
Query: 227 TLHIRQLK 234
T HI ++
Sbjct: 62 TTHIDLIR 69
Score = 24.8 bits (54), Expect = 4.5
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 14/82 (17%)
Query: 91 ETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRAT-GDIH 139
ET V +++ G + + ++ + + H+ G
Sbjct: 14 ETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGG-- 71
Query: 140 IDDHHTNEDVGLAIGTALLQAL 161
+ HH E + A AL AL
Sbjct: 72 -NTHHEIEAIFKAFSRALGIAL 92
>d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium
radiobacter [TaxId: 358]}
Length = 293
Score = 27.6 bits (59), Expect = 1.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 214 EHFFQSLVNTSGMTLHIRQLKRGSTTILILHGIHG 248
E F V + +H + G T+L+LHG G
Sbjct: 6 EDFKHYEVQLPDVKIHYVREGAG-PTLLLLHGWPG 39
>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid
3/5-O-methyltransferase {Alfalfa (Medicago sativa)
[TaxId: 3879]}
Length = 107
Score = 25.2 bits (55), Expect = 3.8
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 106 ADSSTCIPFLDHMLDQLASHGLFDVHVRATGD 137
+ LD ML LA + + VR D
Sbjct: 56 TTNPDAPVMLDRMLRLLACYIILTCSVRTQQD 87
>d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 131
Score = 25.2 bits (55), Expect = 5.7
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 12/61 (19%)
Query: 82 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHID 141
I ++K T E V VK + GS L+ ++ L + GD+
Sbjct: 13 IEDIKIDTDEAGVVVKADTLGS-----------LEAVVKILRDMYVPIKVA-DIGDVSRR 60
Query: 142 D 142
D
Sbjct: 61 D 61
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 178
Score = 25.4 bits (55), Expect = 5.7
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 192 PHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLKR 235
D+ IP L F + + L +R +K
Sbjct: 124 KKEKVDIHIPCTEF----VNLCRSFNEDYGDHKVFNLALRFVKG 163
>d1f0la2 d.166.1.1 (A:1-187) Diphtheria toxin, N-terminal domain
{Corynebacterium diphtheriae [TaxId: 1717]}
Length = 187
Score = 25.5 bits (55), Expect = 5.9
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 138 IHIDDHHT-NEDVGLAIGTALLQALGDRKGINRFGD 172
+ +D+ T +++GL++ L++ +G + I RFGD
Sbjct: 94 LKVDNAETIKKELGLSLTEPLMEQVGTEEFIKRFGD 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.383
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 882,862
Number of extensions: 37980
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 16
Length of query: 255
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,268,006
Effective search space: 218097032
Effective search space used: 218097032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)