BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025281
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|B Chain B, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|C Chain C, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|D Chain D, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL8|A Chain A, Human SdhNAD+ COMPLEX
pdb|1PL8|B Chain B, Human SdhNAD+ COMPLEX
pdb|1PL8|C Chain C, Human SdhNAD+ COMPLEX
pdb|1PL8|D Chain D, Human SdhNAD+ COMPLEX
Length = 356
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 75 GEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPASIERRFIEM 134
G V+KV + L+ GD+V I G REN E+ M R + P
Sbjct: 73 GTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFY 132
Query: 135 RRNAKIQSAHRAISNVSMEVDKLVEQVS 162
+ NA ++ NV+ E L+E +S
Sbjct: 133 KHNAAF--CYKLPDNVTFEEGALIEPLS 158
>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|B Chain B, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|C Chain C, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|D Chain D, Human SdhNADHINHIBITOR COMPLEX
Length = 356
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 75 GEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPASIERRFIEM 134
G V+KV + L+ GD+V I G REN E+ R + P
Sbjct: 73 GTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKXGRYNLSPSIFFCATPPDDGNLCRFY 132
Query: 135 RRNAKIQSAHRAISNVSMEVDKLVEQVS 162
+ NA ++ NV+ E L+E +S
Sbjct: 133 KHNAAF--CYKLPDNVTFEEGALIEPLS 158
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 15/168 (8%)
Query: 57 IAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRS 116
+ +G R+ + SR T + L ++GLQ D R R YL+ V R
Sbjct: 93 MVYGNERFIQYLASRNTLFNLSNFL-DKSGLQGYDMSTFIRRYSR----YLNEKAVSYRQ 147
Query: 117 KVILTEDPASIERRFIEMRRNAKIQSAHRAISNVSMEVDKLVEQVSAIEKSISNGVKVPE 176
D ++R + R + + + + ++D L++ + ++NGV
Sbjct: 148 VAF---DFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLD-FNVNSNELTNGV---- 199
Query: 177 VQITTLIEMLMRQAIKLDSISAEGDASAQKKLQGKRVQKCVETLDLLK 224
I +L + AI+L + EG + +K + +C E LD+ K
Sbjct: 200 --INAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYK 245
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 15/168 (8%)
Query: 57 IAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRS 116
+ +G R+ + SR T + L ++GLQ D R R YL+ V R
Sbjct: 86 MVYGNERFIQYLASRNTLFNLSNFL-DKSGLQGYDMSTFIRRYSR----YLNEKAVSYRQ 140
Query: 117 KVILTEDPASIERRFIEMRRNAKIQSAHRAISNVSMEVDKLVEQVSAIEKSISNGVKVPE 176
D ++R + R + + + + ++D L++ + ++NGV
Sbjct: 141 VAF---DFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLD-FNVNSNELTNGV---- 192
Query: 177 VQITTLIEMLMRQAIKLDSISAEGDASAQKKLQGKRVQKCVETLDLLK 224
I +L + AI+L + EG + +K + +C E LD+ K
Sbjct: 193 --INAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYK 238
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 15/168 (8%)
Query: 57 IAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRS 116
+ +G R+ + SR T + L ++GLQ D R R YL+ V R
Sbjct: 93 MVYGNERFIQYLASRNTLFNLSNFL-DKSGLQGYDMSTFIRRYSR----YLNEKAVSYRQ 147
Query: 117 KVILTEDPASIERRFIEMRRNAKIQSAHRAISNVSMEVDKLVEQVSAIEKSISNGVKVPE 176
+ D ++R + R + + + + ++D L++ + ++NGV
Sbjct: 148 ---VAFDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLD-FNVNSNELTNGV---- 199
Query: 177 VQITTLIEMLMRQAIKLDSISAEGDASAQKKLQGKRVQKCVETLDLLK 224
I +L + AI+L + EG + +K + +C E LD+ K
Sbjct: 200 --INAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYK 245
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 15/168 (8%)
Query: 57 IAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRS 116
+ +G R+ + SR T + L ++GLQ D R R YL+ V R
Sbjct: 93 MVYGNERFIQYLASRNTLFNLSNFLD-KSGLQGYDMSTFIRRYSR----YLNEKAVSYRQ 147
Query: 117 KVILTEDPASIERRFIEMRRNAKIQSAHRAISNVSMEVDKLVEQVSAIEKSISNGVKVPE 176
+ D ++R + R + + + + ++D L++ + ++NGV
Sbjct: 148 ---VAFDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLD-FNVNSNELTNGV---- 199
Query: 177 VQITTLIEMLMRQAIKLDSISAEGDASAQKKLQGKRVQKCVETLDLLK 224
I +L + AI+L + EG + +K + +C E LD+ K
Sbjct: 200 --INAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYK 245
>pdb|3IZB|Q Chain Q, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|K Chain K, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|K Chain K, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|R Chain R, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|R Chain R, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 136
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 155 DKLVEQVSAIEKSISNGVKVPEVQITTLIEML-MRQAIKLDSISAEGDASAQKKL 208
D+ V +VSA++ S SNGV + Q + L++ L ++ + + ++SA+ D +K++
Sbjct: 82 DQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLKLPLSVINVSAQRDRRYRKRV 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,474,148
Number of Sequences: 62578
Number of extensions: 230436
Number of successful extensions: 729
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 27
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)