BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025281
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WPX7|BAG2_ARATH BAG family molecular chaperone regulator 2 OS=Arabidopsis thaliana
GN=BAG2 PE=2 SV=1
Length = 285
Score = 211 bits (538), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/278 (40%), Positives = 169/278 (60%), Gaps = 44/278 (15%)
Query: 22 TSTEDEIDCELRPGGMLVQKRSEKTDVPAPYLRLRIAFGALRYEISVNSRATFGEVKKVL 81
T+T + + ELRPGGM+VQKR++ + +R+R+ +G++ +EIS+NS++TFGE+KK+L
Sbjct: 8 TTTSGDGEMELRPGGMVVQKRTDHSSSVPRGIRVRVKYGSVHHEISINSQSTFGELKKIL 67
Query: 82 TGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPASIERRFIEMRRNAKIQ 141
+G TG+ D +IY+ KER++ +LD+ VKDRSK+IL EDP S E+R +E+R+ A +
Sbjct: 68 SGATGVHHQDMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDPISQEKRLLELRKIATKE 127
Query: 142 SAHRAISNVSMEVDKLVEQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISAEGD 201
+ +AIS++S +V++L Q+SA + I G KV E + L+EMLM Q +KLD+IS +GD
Sbjct: 128 KSSKAISDISFQVERLAGQLSAFDTVIGKGGKVEEKNLENLMEMLMNQLVKLDAISGDGD 187
Query: 202 ASAQKKLQGKRVQKCVETLDLLKIANVK-------------------------------V 230
+KK+Q +R+ K VE LDLLKI N +
Sbjct: 188 VKLKKKMQEERLHKYVEALDLLKIKNSRQPQTKPKPQYKEREMLTFYEEASRKPTASSSS 247
Query: 231 QPVVVTTKWETFDP---------PPSTVH----WEIFD 255
PV++TT+WETFD P VH WE+F+
Sbjct: 248 PPVIITTRWETFDSSSASTATLQPVRPVHPKFKWELFN 285
>sp|Q9LYP4|BAG3_ARATH BAG family molecular chaperone regulator 3 OS=Arabidopsis thaliana
GN=BAG3 PE=1 SV=1
Length = 303
Score = 203 bits (517), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 112/284 (39%), Positives = 166/284 (58%), Gaps = 58/284 (20%)
Query: 29 DCELRPGGMLVQKRSEK-TDVPAPYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGL 87
+ E RPGGM+VQ+R+++ +DVP + R+R+ +G++ +EI++NS+++FGE+KK+L+ + GL
Sbjct: 21 EWESRPGGMVVQRRTDQNSDVPRVF-RVRVKYGSVYHEININSQSSFGELKKMLSDQVGL 79
Query: 88 QAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPASIERRFIEMRRNAKIQSAHRAI 147
D ++Y+ KER++ +LD+C VKDRSK+++ EDP S E+R + R+NA I+ A ++I
Sbjct: 80 HHEDMKVLYKDKERDSKMFLDLCGVKDRSKLVVKEDPISQEKRLLAKRKNAAIEKASKSI 139
Query: 148 SNVSMEVDKLVEQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISAEGDASAQKK 207
S++S EVD+L QVSA E I+ G KV E + LIEMLM Q ++LD+I A+GD +K
Sbjct: 140 SDISFEVDRLAGQVSAFETVINKGGKVEEKSLVNLIEMLMNQLLRLDAIIADGDVKLMRK 199
Query: 208 LQGKRVQKCVETLDLLKIAN----VKVQ-------------------------------- 231
+Q +RVQK VE LDLLK+ N V+V
Sbjct: 200 MQVQRVQKYVEALDLLKVKNSAKKVEVNKSVRHKPQTQTRFEQRDLLSFVEEEEEEPRNS 259
Query: 232 --------PVVVTTKWETFD------------PPPSTVHWEIFD 255
P VV +KWE FD P P WE FD
Sbjct: 260 NASSSSGTPAVVASKWEMFDSASTAKAAETVKPVPPRFKWEFFD 303
>sp|Q0WUQ1|BAG1_ARATH BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana
GN=BAG1 PE=1 SV=1
Length = 342
Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 147/203 (72%), Gaps = 4/203 (1%)
Query: 29 DCELRPGGMLVQKRSEKTDVPAP----YLRLRIAFGALRYEISVNSRATFGEVKKVLTGE 84
D E+RPGGMLVQKR+ D P +R+RI +GA+ +EI+++ +A+FGE+KK+LTG
Sbjct: 39 DLEIRPGGMLVQKRNPDLDPVGPPPPPMIRVRIKYGAVYHEINISPQASFGELKKMLTGP 98
Query: 85 TGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPASIERRFIEMRRNAKIQSAH 144
TG+ DQ L+Y+ KER++ +LD+ VKD+SK++L EDP S E+RF+EMR+ AK + A
Sbjct: 99 TGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRFLEMRKIAKTEKAS 158
Query: 145 RAISNVSMEVDKLVEQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISAEGDASA 204
+AIS++S+EVD+L +VSA E G K+ E + T+IE+LM + IKLD+I AEGD
Sbjct: 159 KAISDISLEVDRLGGRVSAFEMVTKKGGKIAEKDLVTVIELLMNELIKLDAIVAEGDVKL 218
Query: 205 QKKLQGKRVQKCVETLDLLKIAN 227
Q+K+Q KRVQ VETLD LK+ N
Sbjct: 219 QRKMQVKRVQNYVETLDALKVKN 241
>sp|Q8RX71|BAG4_ARATH BAG family molecular chaperone regulator 4 OS=Arabidopsis thaliana
GN=BAG4 PE=1 SV=1
Length = 269
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 141/244 (57%), Gaps = 28/244 (11%)
Query: 22 TSTEDEIDCELRPGGMLVQKRSEKTDVP--------------APYLRLRIAFGALRYEIS 67
STE E + E+RPGGMLVQ+R + A +R+ ++ G+ +++
Sbjct: 4 NSTE-ESEWEVRPGGMLVQRRDDAASSDHKPLQDPDSASAAFAQTIRITVSHGSSHHDLH 62
Query: 68 VNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSK-VILTEDPAS 126
+++ ATFG+VKK L +TGL+A + +++RG ER++ E L VKD SK V++ ED
Sbjct: 63 ISAHATFGDVKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVEDT-- 120
Query: 127 IERRFIEMRR---NAKIQSAHRAISNVSMEVDKLVEQVSAIEKSISNGVKVPEVQITTLI 183
+ +E + +++ A A++ V+ EVDKL ++V A+E +++ G +V +
Sbjct: 121 --NKRVEQQPPVVTKEMEKAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAA 178
Query: 184 EMLMRQAIKLDSISAEGDASAQKKLQGKRVQKCVETLDLLK--IANVKV---QPVVVTTK 238
E+LMRQ +KLD I AEGDA Q+K + +R+Q E +D LK +N V + V+T+
Sbjct: 179 ELLMRQLLKLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKARCSNPFVDQSKAAAVSTE 238
Query: 239 WETF 242
WE+F
Sbjct: 239 WESF 242
>sp|Q00796|DHSO_HUMAN Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4
Length = 357
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 75 GEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPASIERRFIEM 134
G V+KV + L+ GD+V I G REN E+ M R + P
Sbjct: 74 GTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFY 133
Query: 135 RRNAKIQSAHRAISNVSMEVDKLVEQVS 162
+ NA ++ NV+ E L+E +S
Sbjct: 134 KHNAAF--CYKLPDNVTFEEGALIEPLS 159
>sp|B1MW12|RL23_LEUCK 50S ribosomal protein L23 OS=Leuconostoc citreum (strain KM20)
GN=rplW PE=3 SV=1
Length = 95
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 63 RYEISVNSRATFGEVKKVLTGETGLQ-AGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121
RY V++RAT E+KK + +Q +G RGK++ G Y+ R ++ V L+
Sbjct: 24 RYVFEVDTRATKPEIKKAIEEIFDVQVSGLNTANVRGKKKRQGRYVGYTRKLKKATVTLS 83
Query: 122 EDPASIE 128
+D I+
Sbjct: 84 KDSKDIQ 90
>sp|O94716|FTA4_SCHPO Kinetochore protein fta4 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=fta4 PE=1 SV=1
Length = 233
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 127 IERRFIEMRRNAKIQSAHRAISNVSMEVDKLVEQVSAIEK-SISNGVKVPEVQITTL 182
+R + ++++AK+ +H+A +V+ ++ KL EQ SAIE + N + E+ ++ L
Sbjct: 46 FQRLQLRIQKHAKLNYSHQATQHVAAQIRKLYEQNSAIEDITFLNPLFYGEIDLSNL 102
>sp|Q3YST5|RPOB_EHRCJ DNA-directed RNA polymerase subunit beta OS=Ehrlichia canis (strain
Jake) GN=rpoB PE=3 SV=1
Length = 1380
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 64 YEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123
YEI V S + E+K+VL +G+Q +Q + +YL+ KD V L+++
Sbjct: 985 YEIDVVSEYFYDELKRVLV-NSGVQCNNQNV---------NDYLESTPKKDWWNVNLSDE 1034
Query: 124 PASIERRFIEMRRNAKIQSAHRAISNVSMEVDKL 157
++ + + ++ IQ+AH S ++DKL
Sbjct: 1035 TVLLQINNLREKFDSMIQNAH---SKFDQKIDKL 1065
>sp|Q9NIF3|UBQL_DICDI Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1
Length = 523
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 44/96 (45%)
Query: 63 RYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122
++++ V T + KKV+ + + A Q +IY G+ ++ + LD +++D V L +
Sbjct: 13 KFDVDVELGITVADFKKVIATKCSIPADQQRIIYSGRILKDHQTLDEIKIQDGHTVHLVK 72
Query: 123 DPASIERRFIEMRRNAKIQSAHRAISNVSMEVDKLV 158
A +E + + + I V ++ ++
Sbjct: 73 GAAPPPPPPVEQQVPTPSNTQPQGIPGVPQNINDMM 108
>sp|A1QZS0|RS3_BORT9 30S ribosomal protein S3 OS=Borrelia turicatae (strain 91E135)
GN=rpsC PE=3 SV=1
Length = 276
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 18/110 (16%)
Query: 27 EIDCELRPGGMLVQKRSEKTD--VPAPYLRLRIAFGALRYEISVNSRATFGEVK------ 78
+I R GG + + E + +P LR I +G ++ T+G +
Sbjct: 153 KIKVSGRLGGAEIARSFEVKEGRIPLHTLRANIDYGF------AEAQTTYGVIGVKVWLF 206
Query: 79 --KVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPAS 126
+VL +T AG +I + RE EY D RV D+SK ++ +D S
Sbjct: 207 KGEVLGKQTNSDAGQ--VINKKTSREKSEYFDKNRVDDKSKKVVNDDKFS 254
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,509,392
Number of Sequences: 539616
Number of extensions: 3125446
Number of successful extensions: 11629
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 11608
Number of HSP's gapped (non-prelim): 60
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 60 (27.7 bits)