Query 025281
Match_columns 255
No_of_seqs 193 out of 310
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:15:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01813 UBP_N UBP ubiquitin pr 99.8 4.8E-20 1E-24 138.5 8.3 71 53-123 1-74 (74)
2 KOG4361 BCL2-associated athano 99.8 3.6E-21 7.8E-26 181.3 2.0 204 27-230 31-252 (344)
3 cd01812 BAG1_N Ubiquitin-like 99.8 1.8E-18 3.9E-23 126.0 8.3 71 53-123 1-71 (71)
4 cd01807 GDX_N ubiquitin-like d 99.7 2E-16 4.2E-21 117.6 7.9 71 54-124 2-73 (74)
5 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 2.1E-16 4.6E-21 118.7 8.0 70 52-121 1-71 (73)
6 cd01809 Scythe_N Ubiquitin-lik 99.6 8.3E-16 1.8E-20 111.8 8.0 70 53-122 1-71 (72)
7 cd01804 midnolin_N Ubiquitin-l 99.6 7.9E-16 1.7E-20 116.2 7.9 70 53-123 2-72 (78)
8 PF02179 BAG: BAG domain; Int 99.6 7.1E-16 1.5E-20 116.3 6.8 72 147-224 2-76 (76)
9 cd01793 Fubi Fubi ubiquitin-li 99.6 1.1E-15 2.5E-20 113.6 7.8 68 54-122 2-69 (74)
10 PF00240 ubiquitin: Ubiquitin 99.6 1.6E-15 3.5E-20 110.1 8.3 65 60-124 4-68 (69)
11 cd01794 DC_UbP_C dendritic cel 99.6 1.1E-15 2.3E-20 113.8 6.7 68 54-122 2-69 (70)
12 cd01798 parkin_N amino-termina 99.6 1.2E-15 2.7E-20 112.0 7.0 68 54-122 2-69 (70)
13 cd01796 DDI1_N DNA damage indu 99.6 2.4E-15 5.1E-20 111.6 7.3 68 53-120 1-69 (71)
14 smart00264 BAG BAG domains, pr 99.6 2.7E-15 5.8E-20 114.5 7.7 72 147-224 5-79 (79)
15 cd01805 RAD23_N Ubiquitin-like 99.6 4.4E-15 9.6E-20 110.1 8.3 68 55-122 3-73 (77)
16 cd01810 ISG15_repeat2 ISG15 ub 99.6 2.8E-15 6.2E-20 111.5 6.9 69 53-122 1-69 (74)
17 cd01797 NIRF_N amino-terminal 99.6 3.7E-15 8.1E-20 113.0 7.6 70 53-122 3-73 (78)
18 cd01808 hPLIC_N Ubiquitin-like 99.6 7E-15 1.5E-19 108.4 7.4 68 54-121 2-69 (71)
19 cd01800 SF3a120_C Ubiquitin-li 99.6 6.6E-15 1.4E-19 110.3 7.1 66 58-123 4-69 (76)
20 cd01806 Nedd8 Nebb8-like ubiq 99.6 1.6E-14 3.4E-19 106.1 8.3 69 54-122 2-71 (76)
21 PTZ00044 ubiquitin; Provisiona 99.6 1.3E-14 2.7E-19 107.6 7.8 68 55-122 3-71 (76)
22 cd01792 ISG15_repeat1 ISG15 ub 99.6 1.1E-14 2.5E-19 110.0 7.2 71 53-123 3-76 (80)
23 cd01803 Ubiquitin Ubiquitin. U 99.5 1.9E-14 4.1E-19 105.7 7.9 69 54-122 2-71 (76)
24 cd01802 AN1_N ubiquitin-like d 99.5 2.9E-14 6.3E-19 113.7 8.8 73 50-122 25-98 (103)
25 cd01790 Herp_N Homocysteine-re 99.5 2.3E-14 5.1E-19 109.8 7.8 69 53-121 2-77 (79)
26 smart00213 UBQ Ubiquitin homol 99.5 6.6E-14 1.4E-18 98.7 7.1 64 53-116 1-64 (64)
27 cd01769 UBL Ubiquitin-like dom 99.4 1.5E-12 3.2E-17 92.8 7.2 63 60-122 6-68 (69)
28 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 5.6E-13 1.2E-17 101.4 5.1 54 69-122 18-74 (75)
29 KOG0010 Ubiquitin-like protein 99.4 9E-13 1.9E-17 128.6 7.2 72 51-122 14-85 (493)
30 cd01799 Hoil1_N Ubiquitin-like 99.3 1.9E-12 4.1E-17 97.7 6.6 63 57-121 9-73 (75)
31 cd01789 Alp11_N Ubiquitin-like 99.3 1.8E-11 3.9E-16 93.9 9.0 70 53-122 2-80 (84)
32 TIGR00601 rad23 UV excision re 99.3 7.4E-12 1.6E-16 119.9 8.0 69 54-122 2-74 (378)
33 PF14560 Ubiquitin_2: Ubiquiti 99.3 1.8E-11 3.9E-16 93.7 8.1 74 52-125 1-86 (87)
34 KOG1872 Ubiquitin-specific pro 99.3 9.3E-12 2E-16 121.0 7.0 75 51-125 2-77 (473)
35 cd01763 Sumo Small ubiquitin-r 99.2 7.1E-11 1.5E-15 90.9 9.8 73 49-121 8-81 (87)
36 KOG0005 Ubiquitin-like protein 99.1 1.2E-10 2.7E-15 85.4 4.8 67 55-121 3-70 (70)
37 cd01795 USP48_C USP ubiquitin- 99.1 2.3E-10 5E-15 91.5 6.6 59 64-122 17-76 (107)
38 cd01814 NTGP5 Ubiquitin-like N 99.0 2.8E-10 6.1E-15 92.6 4.4 75 52-126 6-93 (113)
39 PF11976 Rad60-SLD: Ubiquitin- 99.0 3.1E-09 6.7E-14 77.8 8.3 69 53-121 1-71 (72)
40 KOG0004 Ubiquitin/40S ribosoma 98.8 1.7E-09 3.7E-14 92.1 3.4 68 53-121 3-70 (156)
41 KOG0003 Ubiquitin/60s ribosoma 98.8 2.2E-09 4.7E-14 87.1 0.9 65 57-121 6-70 (128)
42 KOG0011 Nucleotide excision re 98.7 1.6E-08 3.4E-13 95.2 6.4 69 54-122 2-73 (340)
43 cd01801 Tsc13_N Ubiquitin-like 98.7 4E-08 8.6E-13 73.8 5.5 52 69-120 20-74 (77)
44 PLN02560 enoyl-CoA reductase 98.6 1.6E-07 3.4E-12 88.1 7.6 68 53-121 3-81 (308)
45 cd00196 UBQ Ubiquitin-like pro 98.5 4.6E-07 1E-11 59.5 6.9 63 60-122 6-68 (69)
46 KOG0001 Ubiquitin and ubiquiti 98.5 1.2E-06 2.5E-11 61.3 8.6 70 53-123 2-71 (75)
47 KOG4248 Ubiquitin-like protein 98.5 2E-07 4.3E-12 97.9 6.4 70 54-124 4-74 (1143)
48 cd01788 ElonginB Ubiquitin-lik 98.5 5.8E-07 1.3E-11 73.6 7.5 68 53-121 3-78 (119)
49 PF13881 Rad60-SLD_2: Ubiquiti 98.4 1.4E-06 3E-11 70.7 7.8 73 53-125 5-90 (111)
50 PF11543 UN_NPL4: Nuclear pore 98.0 1.2E-05 2.6E-10 61.6 5.9 69 52-121 4-78 (80)
51 PF08817 YukD: WXG100 protein 97.8 5.2E-05 1.1E-09 57.2 6.1 70 52-121 2-79 (79)
52 KOG0006 E3 ubiquitin-protein l 97.6 9E-05 2E-09 70.3 5.4 59 63-121 15-73 (446)
53 PF11470 TUG-UBL1: GLUT4 regul 97.4 0.00072 1.6E-08 50.2 6.5 65 56-120 1-65 (65)
54 KOG3206 Alpha-tubulin folding 97.2 0.00082 1.8E-08 60.5 6.4 72 52-123 1-81 (234)
55 cd01811 OASL_repeat1 2'-5' oli 97.0 0.0037 8E-08 48.0 6.9 70 53-123 1-76 (80)
56 PF10302 DUF2407: DUF2407 ubiq 96.9 0.0018 3.9E-08 51.5 5.2 51 64-114 14-68 (97)
57 smart00666 PB1 PB1 domain. Pho 96.7 0.0082 1.8E-07 44.6 6.9 47 52-98 1-47 (81)
58 KOG4495 RNA polymerase II tran 96.6 0.0038 8.2E-08 50.2 5.2 60 53-112 3-64 (110)
59 KOG3493 Ubiquitin-like protein 96.5 0.0012 2.5E-08 49.6 1.2 60 61-120 11-70 (73)
60 PF00789 UBX: UBX domain; Int 96.2 0.038 8.3E-07 41.2 8.0 71 50-120 4-80 (82)
61 COG5417 Uncharacterized small 96.1 0.031 6.6E-07 43.1 7.3 68 53-120 5-80 (81)
62 PF00564 PB1: PB1 domain; Int 96.1 0.028 6.1E-07 41.7 7.0 47 52-98 1-48 (84)
63 smart00166 UBX Domain present 96.0 0.059 1.3E-06 40.4 8.3 70 51-120 3-78 (80)
64 cd01767 UBX UBX (ubiquitin reg 95.6 0.1 2.2E-06 38.8 8.3 68 52-121 2-75 (77)
65 KOG0013 Uncharacterized conser 95.6 0.0093 2E-07 53.8 2.9 70 52-121 147-216 (231)
66 KOG1769 Ubiquitin-like protein 95.3 0.13 2.8E-06 41.4 8.3 73 50-122 18-91 (99)
67 cd06406 PB1_P67 A PB1 domain i 95.3 0.048 1E-06 42.3 5.5 46 53-99 3-48 (80)
68 KOG4361 BCL2-associated athano 95.2 0.01 2.2E-07 56.9 2.0 59 146-211 286-344 (344)
69 cd06407 PB1_NLP A PB1 domain i 95.0 0.094 2E-06 40.4 6.5 46 53-98 1-47 (82)
70 cd05992 PB1 The PB1 domain is 94.9 0.088 1.9E-06 38.7 5.8 46 53-98 1-47 (81)
71 cd01770 p47_UBX p47-like ubiqu 94.6 0.28 6E-06 37.3 8.1 68 51-118 3-75 (79)
72 cd01772 SAKS1_UBX SAKS1-like U 93.8 0.6 1.3E-05 35.2 8.5 68 52-120 4-77 (79)
73 cd06396 PB1_NBR1 The PB1 domai 93.0 0.33 7.1E-06 37.7 5.9 46 53-104 1-48 (81)
74 PF15044 CLU_N: Mitochondrial 92.9 0.19 4.1E-06 38.1 4.4 59 68-126 1-61 (76)
75 cd06408 PB1_NoxR The PB1 domai 92.8 0.55 1.2E-05 36.8 6.9 45 52-97 2-46 (86)
76 KOG4583 Membrane-associated ER 92.1 0.086 1.9E-06 50.7 2.0 64 50-113 7-75 (391)
77 cd01773 Faf1_like1_UBX Faf1 ik 91.6 2.1 4.5E-05 33.2 8.8 70 50-120 3-78 (82)
78 cd06398 PB1_Joka2 The PB1 doma 90.8 1.1 2.4E-05 35.2 6.8 46 53-98 1-52 (91)
79 cd01771 Faf1_UBX Faf1 UBX doma 90.5 2.5 5.4E-05 32.2 8.3 69 51-120 3-77 (80)
80 cd01774 Faf1_like2_UBX Faf1 ik 90.3 3 6.4E-05 32.2 8.7 68 52-120 4-82 (85)
81 PF14836 Ubiquitin_3: Ubiquiti 89.4 2.1 4.5E-05 33.8 7.2 58 62-120 14-77 (88)
82 PRK06437 hypothetical protein; 88.8 2.8 6E-05 30.8 7.2 58 55-122 5-62 (67)
83 PF13019 Telomere_Sde2: Telome 88.2 1 2.2E-05 39.2 5.2 55 62-116 15-73 (162)
84 cd06411 PB1_p51 The PB1 domain 88.1 1.2 2.6E-05 34.4 4.9 37 62-98 7-43 (78)
85 cd06397 PB1_UP1 Uncharacterize 86.1 2.1 4.6E-05 33.4 5.3 45 53-97 1-45 (82)
86 COG5227 SMT3 Ubiquitin-like pr 84.9 3.7 8E-05 32.9 6.3 68 51-118 23-91 (103)
87 KOG4250 TANK binding protein k 84.8 17 0.00036 38.5 12.6 62 59-122 322-385 (732)
88 PRK08364 sulfur carrier protei 84.7 8.2 0.00018 28.3 7.8 61 53-122 5-65 (70)
89 cd00754 MoaD Ubiquitin domain 82.7 5.2 0.00011 29.1 6.1 58 60-122 14-75 (80)
90 KOG1639 Steroid reductase requ 82.6 3.1 6.7E-05 38.9 5.8 56 66-121 17-77 (297)
91 TIGR02958 sec_mycoba_snm4 secr 81.1 7.6 0.00016 38.5 8.3 70 53-122 3-79 (452)
92 PF12754 Blt1: Cell-cycle cont 78.6 0.66 1.4E-05 44.1 0.0 74 50-123 76-181 (309)
93 KOG0012 DNA damage inducible p 78.6 3.5 7.5E-05 40.2 4.8 63 60-122 11-75 (380)
94 cd06404 PB1_aPKC PB1 domain is 77.2 9.6 0.00021 29.8 6.1 46 53-98 1-47 (83)
95 PLN02799 Molybdopterin synthas 77.2 14 0.0003 27.5 6.9 65 53-122 2-77 (82)
96 PF10209 DUF2340: Uncharacteri 76.1 14 0.00031 30.8 7.2 56 68-123 22-108 (122)
97 cd06410 PB1_UP2 Uncharacterize 75.6 7.7 0.00017 30.8 5.3 36 60-96 21-56 (97)
98 PRK01777 hypothetical protein; 73.3 44 0.00095 26.4 9.2 63 51-122 2-75 (95)
99 KOG2982 Uncharacterized conser 70.3 6.3 0.00014 38.3 4.3 68 54-121 340-415 (418)
100 TIGR01687 moaD_arch MoaD famil 70.0 36 0.00078 25.4 7.7 59 60-122 14-83 (88)
101 PRK06488 sulfur carrier protei 69.3 29 0.00064 24.7 6.8 59 56-122 2-60 (65)
102 PF09379 FERM_N: FERM N-termin 65.9 36 0.00077 24.6 6.8 54 60-113 5-65 (80)
103 smart00295 B41 Band 4.1 homolo 65.6 56 0.0012 27.3 8.9 69 52-120 3-80 (207)
104 cd06409 PB1_MUG70 The MUG70 pr 64.6 21 0.00046 27.9 5.5 52 60-125 9-63 (86)
105 KOG2561 Adaptor protein NUB1, 64.5 4.6 0.0001 40.7 2.2 72 51-122 36-110 (568)
106 PF02017 CIDE-N: CIDE-N domain 63.6 44 0.00095 25.8 7.0 59 59-122 11-71 (78)
107 cd00565 ThiS ThiaminS ubiquiti 63.3 32 0.00069 24.5 6.0 53 65-122 8-60 (65)
108 KOG2086 Protein tyrosine phosp 62.3 23 0.0005 34.8 6.5 71 48-118 301-376 (380)
109 PF10768 FliX: Class II flagel 61.9 11 0.00024 32.1 3.8 35 189-226 55-89 (139)
110 cd01775 CYR1_RA Ubiquitin doma 61.3 63 0.0014 26.0 7.8 46 54-99 4-52 (97)
111 PRK12787 fliX flagellar assemb 61.0 12 0.00026 31.9 3.8 34 190-226 54-87 (138)
112 cd01615 CIDE_N CIDE_N domain, 59.8 66 0.0014 24.8 7.4 64 54-122 6-71 (78)
113 TIGR01682 moaD molybdopterin c 58.9 60 0.0013 23.9 7.0 56 62-122 16-75 (80)
114 cd06539 CIDE_N_A CIDE_N domain 57.1 79 0.0017 24.5 7.4 65 53-122 5-71 (78)
115 PRK05863 sulfur carrier protei 55.4 57 0.0012 23.4 6.2 58 57-122 3-60 (65)
116 TIGR01683 thiS thiamine biosyn 53.7 55 0.0012 23.2 5.8 53 65-122 7-59 (64)
117 smart00266 CAD Domains present 53.4 97 0.0021 23.7 7.3 49 72-122 19-69 (74)
118 PF14732 UAE_UbL: Ubiquitin/SU 51.6 32 0.00069 26.5 4.6 57 66-122 2-68 (87)
119 PF14533 USP7_C2: Ubiquitin-sp 50.1 35 0.00077 30.3 5.2 48 63-110 35-90 (213)
120 PRK05659 sulfur carrier protei 50.1 88 0.0019 22.0 6.8 60 56-122 2-61 (66)
121 PF02597 ThiS: ThiS family; I 49.1 66 0.0014 22.9 5.7 58 63-122 13-72 (77)
122 PRK05738 rplW 50S ribosomal pr 48.6 93 0.002 24.3 6.8 58 61-121 20-78 (92)
123 cd06537 CIDE_N_B CIDE_N domain 47.8 1.3E+02 0.0028 23.5 7.3 65 53-122 5-70 (81)
124 PF05008 V-SNARE: Vesicle tran 46.5 77 0.0017 23.2 5.8 18 205-222 22-39 (79)
125 PRK06944 sulfur carrier protei 45.4 1E+02 0.0023 21.5 7.0 58 57-122 3-60 (65)
126 KOG3650 Predicted coiled-coil 44.0 35 0.00076 27.9 3.8 35 192-226 44-78 (120)
127 PF14533 USP7_C2: Ubiquitin-sp 43.3 29 0.00063 30.8 3.6 29 62-90 133-161 (213)
128 PRK06083 sulfur carrier protei 42.7 1.6E+02 0.0034 22.7 7.8 63 53-122 17-79 (84)
129 cd06536 CIDE_N_ICAD CIDE_N dom 42.6 1.3E+02 0.0028 23.4 6.6 63 55-122 7-73 (80)
130 cd06401 PB1_TFG The PB1 domain 42.3 1.1E+02 0.0023 23.9 6.1 45 54-98 2-50 (81)
131 PRK08453 fliD flagellar cappin 41.5 42 0.00092 35.3 4.9 48 53-101 129-187 (673)
132 PF14451 Ub-Mut7C: Mut7-C ubiq 41.3 87 0.0019 24.0 5.5 52 62-122 23-75 (81)
133 cd06538 CIDE_N_FSP27 CIDE_N do 39.3 1.8E+02 0.0038 22.6 6.9 49 72-122 21-70 (79)
134 PF00276 Ribosomal_L23: Riboso 38.2 62 0.0013 25.1 4.3 57 62-121 21-78 (91)
135 TIGR02978 phageshock_pspC phag 37.9 41 0.00088 27.8 3.4 108 71-182 10-121 (121)
136 cd01776 Rin1_RA Ubiquitin doma 36.6 1.1E+02 0.0023 24.3 5.3 46 60-105 12-62 (87)
137 PF00788 RA: Ras association ( 36.5 1.4E+02 0.0031 21.7 6.0 32 63-94 18-51 (93)
138 PF14453 ThiS-like: ThiS-like 36.3 99 0.0021 22.5 4.8 53 57-122 3-55 (57)
139 PRK12280 rplW 50S ribosomal pr 36.3 2.8E+02 0.0061 24.1 8.4 66 62-127 23-97 (158)
140 KOG0007 Splicing factor 3a, su 35.6 15 0.00034 34.9 0.7 48 58-105 289-337 (341)
141 PRK10697 DNA-binding transcrip 35.0 50 0.0011 27.3 3.5 100 71-181 15-117 (118)
142 PF12436 USP7_ICP0_bdg: ICP0-b 34.0 66 0.0014 29.2 4.5 70 51-120 67-149 (249)
143 cd01768 RA RA (Ras-associating 33.1 1.8E+02 0.004 21.3 6.1 35 60-94 11-47 (87)
144 TIGR00244 transcriptional regu 32.7 67 0.0015 27.7 4.0 43 152-198 82-124 (147)
145 cd01760 RBD Ubiquitin-like dom 30.9 1.3E+02 0.0029 22.5 4.9 46 54-100 3-48 (72)
146 PF08783 DWNN: DWNN domain; I 30.7 68 0.0015 24.4 3.4 44 55-98 3-49 (74)
147 KOG4842 Protein involved in si 30.7 19 0.0004 33.9 0.3 49 53-101 4-52 (278)
148 PRK11130 moaD molybdopterin sy 30.3 2.3E+02 0.0049 21.0 8.3 52 66-122 19-76 (81)
149 PRK12765 flagellar capping pro 29.9 1.1E+02 0.0023 31.7 5.6 51 50-100 130-190 (595)
150 PF11620 GABP-alpha: GA-bindin 29.7 1.8E+02 0.0038 23.1 5.5 58 64-121 5-62 (88)
151 COG1327 Predicted transcriptio 29.5 78 0.0017 27.5 3.9 63 161-226 88-150 (156)
152 cd06403 PB1_Par6 The PB1 domai 28.1 2E+02 0.0044 22.4 5.6 45 54-98 2-48 (80)
153 COG5100 NPL4 Nuclear pore prot 27.4 1.4E+02 0.0031 30.1 5.7 67 53-121 3-77 (571)
154 PTZ00380 microtubule-associate 27.3 81 0.0017 26.3 3.5 32 67-99 46-77 (121)
155 KOG2689 Predicted ubiquitin re 26.0 1.9E+02 0.004 27.6 6.0 71 51-121 209-285 (290)
156 COG0089 RplW Ribosomal protein 26.0 1.3E+02 0.0028 24.1 4.3 40 62-101 22-62 (94)
157 PF12436 USP7_ICP0_bdg: ICP0-b 25.3 94 0.002 28.2 3.9 34 62-95 190-223 (249)
158 PF02192 PI3K_p85B: PI3-kinase 25.1 90 0.002 23.9 3.2 23 64-86 2-24 (78)
159 cd06405 PB1_Mekk2_3 The PB1 do 24.3 1.7E+02 0.0037 22.7 4.5 44 53-99 1-44 (79)
160 COG1551 CsrA RNA-binding globa 22.9 2.8E+02 0.0061 21.3 5.4 48 37-84 1-50 (73)
161 PRK06228 F0F1 ATP synthase sub 22.8 1.1E+02 0.0024 25.4 3.6 17 178-194 113-129 (131)
162 PRK08053 sulfur carrier protei 22.3 3E+02 0.0064 19.6 7.2 59 57-122 3-61 (66)
163 smart00144 PI3K_rbd PI3-kinase 21.8 4.1E+02 0.0089 21.0 7.8 35 50-84 15-51 (108)
164 PF14284 PcfJ: PcfJ-like prote 21.7 42 0.00091 28.8 0.8 19 29-47 128-146 (169)
165 cd01764 Urm1 Urm1-like ubuitin 21.3 3E+02 0.0065 21.4 5.5 59 62-122 17-89 (94)
166 PF10790 DUF2604: Protein of U 21.0 3.2E+02 0.007 20.8 5.3 62 60-121 4-69 (76)
167 PF08825 E2_bind: E2 binding d 20.8 1.2E+02 0.0027 23.3 3.2 56 66-122 1-70 (84)
168 smart00314 RA Ras association 20.3 2.5E+02 0.0054 20.8 4.8 35 61-95 15-51 (90)
169 PF01562 Pep_M12B_propep: Repr 20.1 2.4E+02 0.0052 22.3 5.0 76 30-105 7-90 (131)
170 cd01787 GRB7_RA RA (RAS-associ 20.1 3.4E+02 0.0073 21.3 5.5 66 55-120 5-82 (85)
No 1
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.82 E-value=4.8e-20 Score=138.46 Aligned_cols=71 Identities=20% Similarity=0.361 Sum_probs=68.7
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEe---cCeecCCccchhhcCCCCCcEEEEecC
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIY---RGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiy---KGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
|+|+|||++++|+|+|++++|+++||++|++.|||||++||||| +|+.++|+.+|+.|||++|++|||||+
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmGs 74 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMGT 74 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEeC
Confidence 68999999999999999999999999999999999999999997 999999999999999999999999984
No 2
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=99.81 E-value=3.6e-21 Score=181.25 Aligned_cols=204 Identities=29% Similarity=0.381 Sum_probs=183.1
Q ss_pred cccccccCCceeeeeeCCCCC----C-CCCcEEEEEEeCCEEEEEEEcCCCCHH---HHHHHHHHhcCCCCCce--eEEe
Q 025281 27 EIDCELRPGGMLVQKRSEKTD----V-PAPYLRLRIAFGALRYEISVNSRATFG---EVKKVLTGETGLQAGDQ--VLIY 96 (255)
Q Consensus 27 ~~~we~rpggm~vq~r~~~~~----~-~~~~I~V~Vk~g~~~~~I~v~~~sTvg---dLK~~l~~~TGVpp~~Q--KLiy 96 (255)
+++|+.|||||+||.|..+.. . ...+|.|.+.++...|.+.+.++.+++ |++..+.+.+|+...+| |++|
T Consensus 31 ~~~~~~~Pg~~~~q~r~~p~~~~~~~~~p~~~~v~~~~~~~~~~~~i~p~~~~g~~~d~a~~~~~~ag~sh~d~~~k~~y 110 (344)
T KOG4361|consen 31 GVDAAPRPGGMPVQQRPQPQPPLSWPHFPFGIRVQIEYGQLGHGLAIVPQYPSGNALDLAKPLTEDAGLSHYDQEVKLVY 110 (344)
T ss_pred CcccccCCCCCcCCcCCCCCCcccccccCCCccceeeecccccccccccccccccchhhhcccccccceeecccccccce
Confidence 889999999999999984322 1 356899999999899999999999999 99999999999999887 9999
Q ss_pred cCee-cCCccchhhcCCCCCcEEEEecCCchhhhHhHHHhhhHHHHhHHHhhhhhhHHHHHHHHHHH---HHhhhccCCC
Q 025281 97 RGKE-RENGEYLDMCRVKDRSKVILTEDPASIERRFIEMRRNAKIQSAHRAISNVSMEVDKLVEQVS---AIEKSISNGV 172 (255)
Q Consensus 97 KGK~-ldD~~~L~~~GVkdgSkImLv~~p~s~e~r~~e~kk~~~~~ka~~ais~v~~eVdkLa~~v~---a~e~~v~~g~ 172 (255)
.+++ +|....|+.+|+++-|+|.++.++.+++.+...........++..+++.+..+++++..++. ..+-.++.+.
T Consensus 111 ~~~e~rd~~l~l~~~g~p~~sk~~~~~~~~~q~~~~~~~~~~p~~~q~s~~v~~~~~~t~r~~~~~v~p~~~~~~~~~~~ 190 (344)
T KOG4361|consen 111 VDKELRDQSLRLSSAGVPDASKINVVPDPGSQRARQLGALVAPAPTQTSKNVSDPQLETYRLIGQVVDPEQKELVPNGGG 190 (344)
T ss_pred ecccccccccccccccCcccccceeccChhhcccccccccccccccccccccccccceeeeccccccchhhhhcccCCCC
Confidence 9999 56688999999999999999999999888777666666666788888888889999888886 7777888899
Q ss_pred CcchhhHhHHHHHHHH----HHHHccCccccchhhHHHHHHHHHHHHHHHHHhHhhhhccCC
Q 025281 173 KVPEVQITTLIEMLMR----QAIKLDSISAEGDASAQKKLQGKRVQKCVETLDLLKIANVKV 230 (255)
Q Consensus 173 kv~e~e~~~LsE~LM~----qLLKLD~I~aeGd~R~qRK~~VkrVQ~~le~LD~~k~~n~~~ 230 (255)
+.....+...++.||. +||++|.+.++||+...|+..++|+|++.+..|.|++.++..
T Consensus 191 q~e~~p~~~~iq~l~~~~~e~ll~~~~~~~~~dv~~~~~~~~~r~q~~seaq~~l~~~~s~~ 252 (344)
T KOG4361|consen 191 QPESDPLVAQIQLLMNSLSEELLLLDAILPEGDVEVPRKPAVVRKQAYSEAQDLLKALDSTS 252 (344)
T ss_pred CcCCChhhhhHHHhhhhcchhhhhhcccCCCcccccccccccccccchhhhhhhhhhccccc
Confidence 9999999999999999 799999999999999999999999999999999999998876
No 3
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.76 E-value=1.8e-18 Score=126.04 Aligned_cols=71 Identities=49% Similarity=0.795 Sum_probs=68.9
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
|+|+|+|++..|++++++++|+++||++|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+++
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~~ 71 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLED 71 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999985
No 4
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.67 E-value=2e-16 Score=117.56 Aligned_cols=71 Identities=17% Similarity=0.322 Sum_probs=64.2
Q ss_pred EEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecCC
Q 025281 54 RLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDP 124 (255)
Q Consensus 54 ~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p 124 (255)
.|.|+ .+|.++.++|+++.||++||++|++.+|+|+++|||+|+|+.++|+.+|+.|||+++++|+|+..|
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 34444 345889999999999999999999999999999999999999999999999999999999998643
No 5
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.67 E-value=2.1e-16 Score=118.71 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=65.6
Q ss_pred cEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 52 YLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 52 ~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
++.|.|+. .|+.+.+++++++||++||++|++..|+||++|||+|+|+.++|+.+|.+|||++|++|||-
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 46788885 47999999999999999999999999999999999999999999999999999999999984
No 6
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.64 E-value=8.3e-16 Score=111.85 Aligned_cols=70 Identities=21% Similarity=0.380 Sum_probs=63.6
Q ss_pred EEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 53 LRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 53 I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|+|.|+. .+..++++++++.|+++||++|++.+|+|++.|||+|+|+.++|+.+|+.||+++|++|+|+-
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 3555663 357899999999999999999999999999999999999999999999999999999999973
No 7
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.63 E-value=7.9e-16 Score=116.22 Aligned_cols=70 Identities=23% Similarity=0.284 Sum_probs=63.5
Q ss_pred EEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 53 LRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 53 I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
++|+|+. .|..++|++++++||++||+.|++.+|+|+++|||+|+|+.++|+ +|.+|||++|++|+|+..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEee
Confidence 4566663 457899999999999999999999999999999999999999998 999999999999999864
No 8
>PF02179 BAG: BAG domain; InterPro: IPR003103 BAG domains are present in Bcl-2-associated athanogene 1 and silencer of death domains. The BAG proteins are modulators of chaperone activity, they bind to HSP70/HSC70 proteins and promote substrate release. The proteins have anti-apoptotic activity and increase the anti-cell death function of BCL-2 induced by various stimuli. BAG-1 binds to the serine/threonine kinase Raf-1 or Hsc70/Hsp70 in a mutually exclusive interaction. BAG-1 promotes cell growth by binding to and stimulating Raf-1 activity. The binding of Hsp70 to BAG-1 diminishes Raf-1 signalling and inhibits subsequent events, such as DNA synthesis, as well as arrests the cell cycle. BAG-1 has been suggested to function as a molecular switch that encourages cells to proliferate in normal conditions but become quiescent under a stressful environment []. BAG-family proteins contain a single BAG domain, except for human BAG-5 which has four BAG repeats. The BAG domain is a conserved region located at the C terminus of the BAG-family proteins that binds the ATPase domain of Hsc70/Hsp70. The BAG domain is evolutionarily conserved, and BAG domain containing proteins have been described and/or proven in a variety of organisms including Mus musculus (Mouse), Xenopus spp., Drosophila spp., Bombyx mori (Silk moth), Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast), Schizosaccharomyces pombe (Fission yeast), and Arabidopsis thaliana (Mouse-ear cress). The BAG domain has 110-124 amino acids and is comprised of three anti-parallel alpha-helices, each approximately 30-40 amino acids in length. The first and second helices interact with the serine/threonine kinase Raf-1 and the second and third helices are the sites of the BAG domain interaction with the ATPase domain of Hsc70/Hsp70. Binding of the BAG domain to the ATPase domain is mediated by both electrostatic and hydrophobic interactions in BAG-1 and is energy requiring.; GO: 0051087 chaperone binding; PDB: 1M7K_A 1M62_A 1T7S_A 1UGO_A 1I6Z_A 3A8Y_C 1UK5_A 3FZM_B 3FZL_B 3M3Z_B ....
Probab=99.62 E-value=7.1e-16 Score=116.30 Aligned_cols=72 Identities=39% Similarity=0.503 Sum_probs=67.2
Q ss_pred hhhhhHHHHH-HHHHHHHHhhhccCCCCcchhhHhHHHHHHHHHHHHccCccccc--hhhHHHHHHHHHHHHHHHHHhHh
Q 025281 147 ISNVSMEVDK-LVEQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISAEG--DASAQKKLQGKRVQKCVETLDLL 223 (255)
Q Consensus 147 is~v~~eVdk-La~~v~a~e~~v~~g~kv~e~e~~~LsE~LM~qLLKLD~I~aeG--d~R~qRK~~VkrVQ~~le~LD~~ 223 (255)
|+.+..+|++ |.++|..| +++..++++..|+|+||+.|++||+|+++| ++|.+||.+|++||++++.||.+
T Consensus 2 I~~i~~~v~~~l~~~v~~~------~~~~~~~~~~~l~E~L~~~LlkLD~I~~~g~~~iR~~RK~~v~~iq~~l~~lD~~ 75 (76)
T PF02179_consen 2 IEKIIDEVEKELQPEVEQF------DGKKDEKEYLRLSEMLMQLLLKLDSIETEGNPEIREKRKQAVKRIQQLLDKLDSL 75 (76)
T ss_dssp HHHHHHHHHHCHHHHHHHH------HHHHCCHHHHHHHHHHHHHHHHHHTCECSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------hccCcHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5678889999 99999988 777889999999999999999999999999 89999999999999999999998
Q ss_pred h
Q 025281 224 K 224 (255)
Q Consensus 224 k 224 (255)
|
T Consensus 76 k 76 (76)
T PF02179_consen 76 K 76 (76)
T ss_dssp H
T ss_pred C
Confidence 6
No 9
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.62 E-value=1.1e-15 Score=113.62 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=63.2
Q ss_pred EEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.|.|+.+ +++.++|+++.||++||.+|++.+|+|++.|||+|.|+.++|+.+|++|||+++++|+|+-
T Consensus 2 qi~vk~~-~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01793 2 QLFVRAQ-NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAG 69 (74)
T ss_pred EEEEECC-CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 4566655 7899999999999999999999999999999999999999999999999999999999974
No 10
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.62 E-value=1.6e-15 Score=110.08 Aligned_cols=65 Identities=29% Similarity=0.492 Sum_probs=61.8
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecCC
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDP 124 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p 124 (255)
.|..|+++++++.||++||++|++.+|+|++.|+|+|+|+.++|+.+|.+|||++|++|+|+..|
T Consensus 4 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 4 SGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp TSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 46799999999999999999999999999999999999999999999999999999999998653
No 11
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.61 E-value=1.1e-15 Score=113.78 Aligned_cols=68 Identities=22% Similarity=0.326 Sum_probs=62.5
Q ss_pred EEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+|+..+ |.++++++++++||++||..|++..|+|++.|||+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 2 ~vk~~~-G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLST-GKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCC-CCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 344444 58899999999999999999999999999999999999999999999999999999999973
No 12
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.61 E-value=1.2e-15 Score=112.00 Aligned_cols=68 Identities=18% Similarity=0.352 Sum_probs=62.4
Q ss_pred EEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+|+.. +|.++.++++++.||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++||+|+|+.
T Consensus 2 ~vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 2 YVRTN-TGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred EEEcC-CCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 34443 458899999999999999999999999999999999999999999999999999999999974
No 13
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.60 E-value=2.4e-15 Score=111.62 Aligned_cols=68 Identities=26% Similarity=0.443 Sum_probs=61.8
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCc-cchhhcCCCCCcEEEE
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENG-EYLDMCRVKDRSKVIL 120 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~-~~L~~~GVkdgSkImL 120 (255)
|+|+...++.++.++++++.||++||..|++.+|+|++.|||+|.|+.++|+ .+|+.|||++|++|+|
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 3455554668899999999999999999999999999999999999999886 6899999999999997
No 14
>smart00264 BAG BAG domains, present in regulator of Hsp70 proteins. BAG domains, present in Bcl-2-associated athanogene 1 and silencer of death domains
Probab=99.60 E-value=2.7e-15 Score=114.47 Aligned_cols=72 Identities=32% Similarity=0.375 Sum_probs=61.2
Q ss_pred hhhhhHHH-HHHHHHHHHHhhhccCCCCcchhhHhHHHHHHHHHHHHccCccccc--hhhHHHHHHHHHHHHHHHHHhHh
Q 025281 147 ISNVSMEV-DKLVEQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISAEG--DASAQKKLQGKRVQKCVETLDLL 223 (255)
Q Consensus 147 is~v~~eV-dkLa~~v~a~e~~v~~g~kv~e~e~~~LsE~LM~qLLKLD~I~aeG--d~R~qRK~~VkrVQ~~le~LD~~ 223 (255)
+..+..+| .+|...|..+ .+++.+++|..|+|+||++|++||+|+++| ++|.+||.+|++||+++++||.+
T Consensus 5 v~~~~~ev~~~l~~~v~~~------~~~~~~~~~~~l~E~l~~~LlkLD~i~~~g~~~~R~~RK~~v~~iq~~l~~lD~~ 78 (79)
T smart00264 5 INRVLDEVVKKIEKEVQVA------DGKKDDKEYLRLSEELMKLLLKLDSVDVEGCPDIREARKRLVRLIQNLLNALDSK 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555 3566666655 579999999999999999999999999999 89999999999999999999986
Q ss_pred h
Q 025281 224 K 224 (255)
Q Consensus 224 k 224 (255)
+
T Consensus 79 ~ 79 (79)
T smart00264 79 K 79 (79)
T ss_pred C
Confidence 4
No 15
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.59 E-value=4.4e-15 Score=110.08 Aligned_cols=68 Identities=22% Similarity=0.395 Sum_probs=62.7
Q ss_pred EEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCC--CCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 55 LRIA-FGALRYEISVNSRATFGEVKKVLTGETGL--QAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 55 V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGV--pp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|.|+ .++..|.++++++.||++||+.|++.+|+ |+++|||+|+|+.++|+.+|++|||++|++|+++.
T Consensus 3 i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~ 73 (77)
T cd01805 3 ITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMV 73 (77)
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEE
Confidence 4444 45688999999999999999999999999 99999999999999999999999999999999985
No 16
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.59 E-value=2.8e-15 Score=111.46 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=63.2
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|+|+...| ++++++++++.||++||+.|++.+|+|++.|+|+|+|+.|+|+.+|++|||+++++|+|+-
T Consensus 1 i~vk~~~g-~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKG-RSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCC-CEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 45555555 8899999999999999999999999999999999999999999999999999999999974
No 17
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.59 E-value=3.7e-15 Score=112.97 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=62.5
Q ss_pred EEEEEEeCCEEEEEE-EcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 53 LRLRIAFGALRYEIS-VNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~-v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|+|+...|...++++ ++++.||++||++|++.+|+|++.|||+|+||.++|+.+|+.|||++|++|+|+-
T Consensus 3 I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~ 73 (78)
T cd01797 3 IQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLV 73 (78)
T ss_pred EEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 455555564447885 8999999999999999999999999999999999999999999999999999985
No 18
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.57 E-value=7e-15 Score=108.41 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=60.6
Q ss_pred EEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 54 RLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 54 ~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
+|.|+.....+.+++++++|+++||+.|++.+|+|+++|||+|+|+.++|+.+|.+||+++|++|+|+
T Consensus 2 ~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 2 KVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred EEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 45555332246899999999999999999999999999999999999999999999999999999987
No 19
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.57 E-value=6.6e-15 Score=110.27 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=62.5
Q ss_pred EeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 58 AFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 58 k~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
+.++++++++++++.||++||+.|+..+|+|++.|||+|+|+.++|+.+|..|||++|++|+|+-.
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEe
Confidence 346899999999999999999999999999999999999999999999999999999999999853
No 20
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.56 E-value=1.6e-14 Score=106.11 Aligned_cols=69 Identities=17% Similarity=0.308 Sum_probs=63.2
Q ss_pred EEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.|.|+ .+|.++.++++++.|+++||++|++.+|+||++|||+|.|+.++|+.+|..|||++|+.|+|+-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEE
Confidence 35555 3468899999999999999999999999999999999999999999999999999999999985
No 21
>PTZ00044 ubiquitin; Provisional
Probab=99.56 E-value=1.3e-14 Score=107.56 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=62.6
Q ss_pred EEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 55 LRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 55 V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|.|+ .+|.++.+.++++.||++||++|++.+|+|++.|||+|.|+.++|+.+|+.|||++|++|+|+-
T Consensus 3 i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 3 ILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEE
Confidence 4444 2558899999999999999999999999999999999999999999999999999999999984
No 22
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.55 E-value=1.1e-14 Score=109.98 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=65.0
Q ss_pred EEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeE--EecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 53 LRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVL--IYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 53 I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKL--iyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
+.|.|+ .+|.++.+++++++||++||+.|++.+|+|+++||| +|+|+.++|+.+|++|||++|++|+|+-.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 566666 356889999999999999999999999999999999 99999999999999999999999999853
No 23
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.55 E-value=1.9e-14 Score=105.70 Aligned_cols=69 Identities=22% Similarity=0.365 Sum_probs=63.3
Q ss_pred EEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.|.|+ .+|.++.++++++.|+++||++|++.+|+|++.|+|+|.|+.++|+.+|.+|||++|++|+|+-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 35555 3468899999999999999999999999999999999999999999999999999999999985
No 24
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.54 E-value=2.9e-14 Score=113.68 Aligned_cols=73 Identities=21% Similarity=0.233 Sum_probs=66.8
Q ss_pred CCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 50 APYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.+++.|.|+ .+|.++.++|+++.||++||++|++..|+|++.|||+|.|+.++|+.+|+.|||++|++|+|+-
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 345677777 3568899999999999999999999999999999999999999999999999999999999974
No 25
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.53 E-value=2.3e-14 Score=109.79 Aligned_cols=69 Identities=26% Similarity=0.150 Sum_probs=60.1
Q ss_pred EEEEEEe-CCEEEE--EEEcCCCCHHHHHHHHHHhcC--CCCCceeEEecCeecCCccchhhcC--CCCCcEEEEe
Q 025281 53 LRLRIAF-GALRYE--ISVNSRATFGEVKKVLTGETG--LQAGDQVLIYRGKERENGEYLDMCR--VKDRSKVILT 121 (255)
Q Consensus 53 I~V~Vk~-g~~~~~--I~v~~~sTvgdLK~~l~~~TG--Vpp~~QKLiyKGK~ldD~~~L~~~G--VkdgSkImLv 121 (255)
|+|+||. ++.+++ |+++++.||++||+.|++..+ .||+.|||||+||.|+|+.+|.+|+ +.+|++||||
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV 77 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLV 77 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEE
Confidence 6788884 567745 555899999999999999875 4579999999999999999999997 9999999998
No 26
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.50 E-value=6.6e-14 Score=98.67 Aligned_cols=64 Identities=27% Similarity=0.353 Sum_probs=59.3
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCc
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRS 116 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgS 116 (255)
+.|.|++.+..++++|+++.|+++||..|+..+|+|+.+|||+|+|+.++|+.+|.+|||++|+
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 3577786667899999999999999999999999999999999999999999999999999986
No 27
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.38 E-value=1.5e-12 Score=92.84 Aligned_cols=63 Identities=25% Similarity=0.378 Sum_probs=59.8
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.+..+.+.+++++|+++||++|+..+|+|+.+|+|+|+|+.++|..+|..|||++|+.|+++.
T Consensus 6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 367889999999999999999999999999999999999999999999999999999999975
No 28
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.37 E-value=5.6e-13 Score=101.36 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=49.7
Q ss_pred cCCCCHHHHHHHHHHhc--CCC-CCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 69 NSRATFGEVKKVLTGET--GLQ-AGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 69 ~~~sTvgdLK~~l~~~T--GVp-p~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|.+.||++||++|++.+ |++ ++.|||||+||.++|+.+|.+|||++|++|+||.
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 45679999999999997 475 8899999999999999999999999999999985
No 29
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.36 E-value=9e-13 Score=128.63 Aligned_cols=72 Identities=22% Similarity=0.374 Sum_probs=69.8
Q ss_pred CcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 51 PYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 51 ~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
..|+|+||+.+.+|++.|+.++||.+||+.|+..+++|++.|+|||.||.|+|+++|..|||+||++||||.
T Consensus 14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVi 85 (493)
T KOG0010|consen 14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVI 85 (493)
T ss_pred ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEe
Confidence 459999999988999999999999999999999999999999999999999999999999999999999996
No 30
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.35 E-value=1.9e-12 Score=97.74 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=57.1
Q ss_pred EEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeec-CCccchhhcCCC-CCcEEEEe
Q 025281 57 IAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKER-ENGEYLDMCRVK-DRSKVILT 121 (255)
Q Consensus 57 Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~l-dD~~~L~~~GVk-dgSkImLv 121 (255)
++|| .++.++|+++.||++||.+|++.+|+||+.||| |.|+.+ +|+.+|..|||+ +|+.++|.
T Consensus 9 ~~~~-~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 9 QSHT-VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred ccCC-CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 4455 778899999999999999999999999999999 999987 577999999999 88999984
No 31
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.29 E-value=1.8e-11 Score=93.92 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=59.5
Q ss_pred EEEEEEeC--CEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeE-EecCe-----ec-CCccchhhcCCCCCcEEEEec
Q 025281 53 LRLRIAFG--ALRYEISVNSRATFGEVKKVLTGETGLQAGDQVL-IYRGK-----ER-ENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 53 I~V~Vk~g--~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKL-iyKGK-----~l-dD~~~L~~~GVkdgSkImLv~ 122 (255)
|+|.|++. ....+..++++.|+++||++|+..||+||+.||| +|.|+ .+ +|+.+|..||++||+.||++.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 45556554 4445566999999999999999999999999999 58988 34 678899999999999999996
No 32
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=7.4e-12 Score=119.93 Aligned_cols=69 Identities=22% Similarity=0.405 Sum_probs=63.6
Q ss_pred EEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcC---CCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIA-FGALRYEISVNSRATFGEVKKVLTGETG---LQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TG---Vpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+|+|| ..+++|.|+|+++.||.+||++|+..+| +|+++|||||+||.|+|+.+|..|||++|+.|++|-
T Consensus 2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv 74 (378)
T TIGR00601 2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMV 74 (378)
T ss_pred EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEe
Confidence 45666 4568899999999999999999999999 999999999999999999999999999999999884
No 33
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.27 E-value=1.8e-11 Score=93.73 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=61.7
Q ss_pred cEEEEEEeCCE---EEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEec-Ce-------ecCCccchhhcCCCCCcEEEE
Q 025281 52 YLRLRIAFGAL---RYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYR-GK-------ERENGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 52 ~I~V~Vk~g~~---~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyK-GK-------~ldD~~~L~~~GVkdgSkImL 120 (255)
+|+|.|.|... .+++.++.+.||++||.+|+.+||+||..|+|.|. .. ..+|..+|..||++||.+|++
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 47889998866 88999999999999999999999999999999988 11 135788999999999999999
Q ss_pred ec-CCc
Q 025281 121 TE-DPA 125 (255)
Q Consensus 121 v~-~p~ 125 (255)
+. +|.
T Consensus 81 ~D~~p~ 86 (87)
T PF14560_consen 81 VDTNPS 86 (87)
T ss_dssp EE-T--
T ss_pred EeCCCC
Confidence 96 454
No 34
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=9.3e-12 Score=120.99 Aligned_cols=75 Identities=15% Similarity=0.259 Sum_probs=71.1
Q ss_pred CcEEEEEEeCCEEEEEE-EcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecCCc
Q 025281 51 PYLRLRIAFGALRYEIS-VNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPA 125 (255)
Q Consensus 51 ~~I~V~Vk~g~~~~~I~-v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p~ 125 (255)
++..|.|+|+|+.|+++ ++.++|...||.+|..+|||||++||+++||+.+.|+-.+...+||+|.+|||+|+++
T Consensus 2 ~~~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 2 PSDTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred CcceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 56789999999999988 9999999999999999999999999999999999998889999999999999999755
No 35
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.23 E-value=7.1e-11 Score=90.90 Aligned_cols=73 Identities=8% Similarity=0.165 Sum_probs=67.3
Q ss_pred CCCcEEEEEEeC-CEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 49 PAPYLRLRIAFG-ALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 49 ~~~~I~V~Vk~g-~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
....|.|.|+.- +..+.+.|.+++|+..||..+++..|||++.|||+|.|+.++++.++.+||+++|+.|.++
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 356788888843 6888999999999999999999999999999999999999999999999999999999987
No 36
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.2e-10 Score=85.40 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=61.1
Q ss_pred EEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 55 LRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 55 V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
|+|++ .++..+|++.|+.++.-+|+.+++..||||..|||||.||+..|+.+-..|.+.-||.+||+
T Consensus 3 iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred eeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 44442 34789999999999999999999999999999999999999999999999999999999985
No 37
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.09 E-value=2.3e-10 Score=91.52 Aligned_cols=59 Identities=22% Similarity=0.174 Sum_probs=54.7
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecC-CccchhhcCCCCCcEEEEec
Q 025281 64 YEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERE-NGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 64 ~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ld-D~~~L~~~GVkdgSkImLv~ 122 (255)
..+.|++++|+++||.+|.+..||||.+|||+|.|+.|. |..+|.+|||-.||.|+|+-
T Consensus 17 ~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Lli 76 (107)
T cd01795 17 KALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKA 76 (107)
T ss_pred ceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEe
Confidence 457799999999999999999999999999999999864 57899999999999999986
No 38
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.01 E-value=2.8e-10 Score=92.59 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=63.4
Q ss_pred cEEEEEEeCCEEEEEEEcCCCCHHHHHHHHH-----HhcCCC--CCceeEEecCeecCCccchhhcC------CCCCcEE
Q 025281 52 YLRLRIAFGALRYEISVNSRATFGEVKKVLT-----GETGLQ--AGDQVLIYRGKERENGEYLDMCR------VKDRSKV 118 (255)
Q Consensus 52 ~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~-----~~TGVp--p~~QKLiyKGK~ldD~~~L~~~G------VkdgSkI 118 (255)
.|+++..-|..-=+..+++++||++||+.|+ ..+|+| ++.|||||.||.|+|+.+|.+|+ +...++|
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 4666666666666788899999999999999 555676 99999999999999999999999 7888999
Q ss_pred EEecCCch
Q 025281 119 ILTEDPAS 126 (255)
Q Consensus 119 mLv~~p~s 126 (255)
||+--|..
T Consensus 86 Hvvlr~~~ 93 (113)
T cd01814 86 HVVVQPPL 93 (113)
T ss_pred EEEecCCC
Confidence 99965544
No 39
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.97 E-value=3.1e-09 Score=77.84 Aligned_cols=69 Identities=12% Similarity=0.242 Sum_probs=60.9
Q ss_pred EEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCC-CceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 53 LRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQA-GDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 53 I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp-~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
|+|+|+. +++.+.+.|.++.+|+.|.+.+++..|+|+ ..++|+|.|+.++++.++.++|+++|+.|.++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 4556653 467899999999999999999999999999 99999999999999999999999999999875
No 40
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.7e-09 Score=92.15 Aligned_cols=68 Identities=24% Similarity=0.401 Sum_probs=62.8
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
|+|.-.++ .+...++.++.|+..+|..|+...||||++|||||.|+.|+|..+|++|+|+..|+|+|+
T Consensus 3 ifVk~l~~-kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~ 70 (156)
T KOG0004|consen 3 IFVKTLTG-KTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (156)
T ss_pred cchhhccc-cceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEE
Confidence 55555566 678889999999999999999999999999999999999999999999999999999998
No 41
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.2e-09 Score=87.10 Aligned_cols=65 Identities=23% Similarity=0.375 Sum_probs=61.5
Q ss_pred EEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 57 IAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 57 Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
+.+-|++..+++.|+.||..||..|....||||+.|+|+|.||.++|.-+|..||++..|+|+++
T Consensus 6 ~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~ 70 (128)
T KOG0003|consen 6 KTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
T ss_pred EEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhh
Confidence 34556999999999999999999999999999999999999999999999999999999999997
No 42
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.74 E-value=1.6e-08 Score=95.21 Aligned_cols=69 Identities=28% Similarity=0.411 Sum_probs=62.2
Q ss_pred EEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcC--CCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIA-FGALRYEISVNSRATFGEVKKVLTGETG--LQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TG--Vpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+|+|| ..+.+++|++.|..||.++|+.|+..+| .|++.|||||.||.|+|+.++.+|+|++++-|.+|-
T Consensus 2 ~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMl 73 (340)
T KOG0011|consen 2 KLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVML 73 (340)
T ss_pred eeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEE
Confidence 56666 4568899999999999999999999999 899999999999999999999999999998666653
No 43
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.67 E-value=4e-08 Score=73.81 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=47.3
Q ss_pred cCCCCHHHHHHHHHHhcCC-CCCceeEE--ecCeecCCccchhhcCCCCCcEEEE
Q 025281 69 NSRATFGEVKKVLTGETGL-QAGDQVLI--YRGKERENGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 69 ~~~sTvgdLK~~l~~~TGV-pp~~QKLi--yKGK~ldD~~~L~~~GVkdgSkImL 120 (255)
++++||++||..|+...+. ++++|||. |+|+.+.|+.+|..+||++|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 6889999999999999864 78999994 9999999999999999999999876
No 44
>PLN02560 enoyl-CoA reductase
Probab=98.56 E-value=1.6e-07 Score=88.07 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=56.0
Q ss_pred EEEEEEeCCEEE---EEEEcCCCCHHHHHHHHHHhcCC-CCCceeEEec---C----eecCCccchhhcCCCCCcEEEEe
Q 025281 53 LRLRIAFGALRY---EISVNSRATFGEVKKVLTGETGL-QAGDQVLIYR---G----KERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 53 I~V~Vk~g~~~~---~I~v~~~sTvgdLK~~l~~~TGV-pp~~QKLiyK---G----K~ldD~~~L~~~GVkdgSkImLv 121 (255)
|.|+.+.| +.+ +|++++++||+|||+.|++..++ ++++|||+|. | +.++|+.+|.++||++|++|++=
T Consensus 3 I~Vk~~~G-k~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~k 81 (308)
T PLN02560 3 VTVVSRSG-REIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFK 81 (308)
T ss_pred EEEEcCCC-CeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEE
Confidence 34443344 554 79999999999999999999997 8999999983 3 36789999999999999998873
No 45
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.52 E-value=4.6e-07 Score=59.53 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=58.3
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
++....+.+++..|+++|+..|.+..|+++..|+|++.|..+++...+..+++.+++.|+++.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 467788999999999999999999999999999999999999888888999999999999874
No 46
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.48 E-value=1.2e-06 Score=61.28 Aligned_cols=70 Identities=21% Similarity=0.339 Sum_probs=63.0
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
+++.. .-++.+.+.+.+..+|..+|.+|+...|+|+..|+|+|.|+.+.|..+|..|+|..++.+.|...
T Consensus 2 ~~~~~-~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~ 71 (75)
T KOG0001|consen 2 IFVKT-LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLS 71 (75)
T ss_pred EEEEe-cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEe
Confidence 34444 45688999999999999999999999999999999999999999999999999999999998754
No 47
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2e-07 Score=97.88 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=64.9
Q ss_pred EEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecCC
Q 025281 54 RLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDP 124 (255)
Q Consensus 54 ~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p 124 (255)
.|+|| .....+++.|..+.||.+||+.|...++|+.+.|||||.|+.|.|+..+.+||| ||..|||++-|
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverp 74 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERP 74 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccC
Confidence 47777 456889999999999999999999999999999999999999999999999999 99999999743
No 48
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.47 E-value=5.8e-07 Score=73.57 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=61.7
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCe-ecCCccchhhcCC-------CCCcEEEEe
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGK-ERENGEYLDMCRV-------KDRSKVILT 121 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK-~ldD~~~L~~~GV-------kdgSkImLv 121 (255)
+++.|+....+|-++..+++||-+||+.|+.++..||++|||+ ++- .++|+.+|.+||+ .+-..|-|.
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~-kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa 78 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY-KDDQLLDDGKTLGDCGFTSQTARPQAPATVGLA 78 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheee-cCceeecccccHHHcCccccccccCCCCeEEEE
Confidence 7899999988888999999999999999999999999999999 665 4999999999999 667777775
No 49
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.38 E-value=1.4e-06 Score=70.72 Aligned_cols=73 Identities=25% Similarity=0.338 Sum_probs=51.8
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhc--C-----CCCCceeEEecCeecCCccchhhcCCCCCc------EEE
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGET--G-----LQAGDQVLIYRGKERENGEYLDMCRVKDRS------KVI 119 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~T--G-----Vpp~~QKLiyKGK~ldD~~~L~~~GVkdgS------kIm 119 (255)
++++..-|....+..+++++||++||+.|...= + ..+...||||.||.|+|+.+|.++++.-|. .||
T Consensus 5 lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vmH 84 (111)
T PF13881_consen 5 LKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVMH 84 (111)
T ss_dssp EEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEEE
T ss_pred EEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEEE
Confidence 344444454489999999999999999998531 1 133579999999999999999999998765 677
Q ss_pred EecCCc
Q 025281 120 LTEDPA 125 (255)
Q Consensus 120 Lv~~p~ 125 (255)
|+--|.
T Consensus 85 lvvrp~ 90 (111)
T PF13881_consen 85 LVVRPN 90 (111)
T ss_dssp EEE-SS
T ss_pred EEecCC
Confidence 876443
No 50
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.03 E-value=1.2e-05 Score=61.60 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=40.5
Q ss_pred cEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCe----ec--CCccchhhcCCCCCcEEEEe
Q 025281 52 YLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGK----ER--ENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 52 ~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK----~l--dD~~~L~~~GVkdgSkImLv 121 (255)
.+-|+|....-.+-|++++++|+++|++.|.+.+++|+..|.|. +.. .+ .+..+|+.+||+.|+-|+|-
T Consensus 4 ~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~-~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 4 SMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLS-KDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp --EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---B-SSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred cEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEE-ecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 34455554445777889999999999999999999999988774 332 23 46789999999999999873
No 51
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.82 E-value=5.2e-05 Score=57.19 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=52.1
Q ss_pred cEEEEEEeCC-EEEEEEEcCCCCHHHHHHHHHHhcCCCCCc------eeEE-ecCeecCCccchhhcCCCCCcEEEEe
Q 025281 52 YLRLRIAFGA-LRYEISVNSRATFGEVKKVLTGETGLQAGD------QVLI-YRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 52 ~I~V~Vk~g~-~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~------QKLi-yKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
.++|+|.++. ..+++.+|++.++++|-..|.+..+.+... -+|. -+|..++++.+|.++||.||+.++|.
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence 4789999875 999999999999999999999999985533 3454 57888999999999999999999873
No 52
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=9e-05 Score=70.33 Aligned_cols=59 Identities=22% Similarity=0.394 Sum_probs=51.7
Q ss_pred EEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 63 RYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 63 ~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
.++|+|+.+.+|.+||+.++..+|||+++.|+||.||+|.|+.++..+.+..-|-++.|
T Consensus 15 ~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 15 GLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred ceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 36788999999999999999999999999999999999999999997766666655554
No 53
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.35 E-value=0.00072 Score=50.20 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=48.8
Q ss_pred EEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEE
Q 025281 56 RIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 56 ~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImL 120 (255)
.|.|++.++.|.+.|++|+.++=+......|++++.=-|.|.+|.+|-+.+++-.|+-+|+++-|
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 36788899999999999999999999999999999999999999999999999999999999865
No 54
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00082 Score=60.46 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=60.0
Q ss_pred cEEEEEEeCCEE--EEEEEcCCCCHHHHHHHHHHhcCCCCCceeE-EecCe-----ec-CCccchhhcCCCCCcEEEEec
Q 025281 52 YLRLRIAFGALR--YEISVNSRATFGEVKKVLTGETGLQAGDQVL-IYRGK-----ER-ENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 52 ~I~V~Vk~g~~~--~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKL-iyKGK-----~l-dD~~~L~~~GVkdgSkImLv~ 122 (255)
+|+|.|.+.... .+..++++.|+.+||..|+.+||.+++.++| +|+|- .+ ++++.|..|++.||..||++.
T Consensus 1 ~v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 1 MVRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred CeEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 367778776555 4577899999999999999999999999999 57771 24 457899999999999999997
Q ss_pred C
Q 025281 123 D 123 (255)
Q Consensus 123 ~ 123 (255)
.
T Consensus 81 ~ 81 (234)
T KOG3206|consen 81 S 81 (234)
T ss_pred c
Confidence 4
No 55
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.95 E-value=0.0037 Score=48.03 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=61.4
Q ss_pred EEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEec---Cee--cCCccchhhcCCCCCcEEEEecC
Q 025281 53 LRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYR---GKE--RENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 53 I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyK---GK~--ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
|.|+|+ +|..-..+.|+|++++..||+.|...-|++- .|||-|. |+. +.+..+|..|||=.+-.|.|+++
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 568888 8888889999999999999999999999986 9999984 332 78899999999999999999875
No 56
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.92 E-value=0.0018 Score=51.51 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=39.6
Q ss_pred EEEEEc--CCCCHHHHHHHHHHhcC--CCCCceeEEecCeecCCccchhhcCCCC
Q 025281 64 YEISVN--SRATFGEVKKVLTGETG--LQAGDQVLIYRGKERENGEYLDMCRVKD 114 (255)
Q Consensus 64 ~~I~v~--~~sTvgdLK~~l~~~TG--Vpp~~QKLiyKGK~ldD~~~L~~~GVkd 114 (255)
.+++|+ .+.|+..||.+|.+..+ ..-.++||||.||.|.|...|...-...
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~~ 68 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKLP 68 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhccc
Confidence 345555 78899999999999883 3335899999999999998887654443
No 57
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=96.66 E-value=0.0082 Score=44.59 Aligned_cols=47 Identities=17% Similarity=0.374 Sum_probs=43.6
Q ss_pred cEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecC
Q 025281 52 YLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRG 98 (255)
Q Consensus 52 ~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKG 98 (255)
+++|++.||+..+.+.++.+.|+.+|+.+|....+++....+|-|+.
T Consensus 1 ~~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 1 TVDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred CccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 47899999999999999999999999999999999998888998984
No 58
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.65 E-value=0.0038 Score=50.16 Aligned_cols=60 Identities=20% Similarity=0.178 Sum_probs=52.8
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCe--ecCCccchhhcCC
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGK--ERENGEYLDMCRV 112 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK--~ldD~~~L~~~GV 112 (255)
+++.|+....+|-+.-.++.||-|||..|+.++.=|+..|||.-=.- .|+|..+|.++|.
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 68899988788889999999999999999999999999999975343 4899999999965
No 59
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0012 Score=49.59 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=50.0
Q ss_pred CEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEE
Q 025281 61 ALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 61 ~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImL 120 (255)
|++..|.-++..|+||+|+.|+..||-.|+...|=--+-..+|..+|+.|-|.+|..+-|
T Consensus 11 GKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 11 GKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred CceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 477788889999999999999999999998766652233578999999999999987654
No 60
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.16 E-value=0.038 Score=41.21 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=57.5
Q ss_pred CCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCc-eeEE--ecCeecCCc--cchhhcCCCCCcEEEE
Q 025281 50 APYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGD-QVLI--YRGKERENG--EYLDMCRVKDRSKVIL 120 (255)
Q Consensus 50 ~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~-QKLi--yKGK~ldD~--~~L~~~GVkdgSkImL 120 (255)
.+.++|.|+ .+|.++.-.++++.|+.+|..-|......+... -.|+ |-.+.+.++ .+|.++|+.+++.|+|
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 456777777 346889999999999999999999888887765 6776 565665443 6999999999999987
No 61
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.13 E-value=0.031 Score=43.06 Aligned_cols=68 Identities=4% Similarity=0.151 Sum_probs=58.0
Q ss_pred EEEEEE---eCCEEEEEEEcCCCCHHHHHHHHHHhcCCC--C---CceeEEecCeecCCccchhhcCCCCCcEEEE
Q 025281 53 LRLRIA---FGALRYEISVNSRATFGEVKKVLTGETGLQ--A---GDQVLIYRGKERENGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 53 I~V~Vk---~g~~~~~I~v~~~sTvgdLK~~l~~~TGVp--p---~~QKLiyKGK~ldD~~~L~~~GVkdgSkImL 120 (255)
|.|+|- |++.+|++.+|.+-++..|-..+.+...|. + ...|.+-|++.+.++.-|..|||.||..+-+
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 455554 789999999999999999999998887763 3 2589999999999999999999999998765
No 62
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=96.11 E-value=0.028 Score=41.70 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=44.2
Q ss_pred cEEEEEEeCCEEEE-EEEcCCCCHHHHHHHHHHhcCCCCCceeEEecC
Q 025281 52 YLRLRIAFGALRYE-ISVNSRATFGEVKKVLTGETGLQAGDQVLIYRG 98 (255)
Q Consensus 52 ~I~V~Vk~g~~~~~-I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKG 98 (255)
|+.|++.|++..+- +.++.+.|+.+|+..|+...+.++...+|-|+.
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 68999999999998 999999999999999999999998899999985
No 63
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.00 E-value=0.059 Score=40.45 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=54.9
Q ss_pred CcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE--ecCeecCC---ccchhhcCCCCCcEEEE
Q 025281 51 PYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI--YRGKEREN---GEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 51 ~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi--yKGK~ldD---~~~L~~~GVkdgSkImL 120 (255)
+..+|.|+ .+|.+....++++.|+.+|.+-|....+.....-.|+ |-.+.+.+ +.+|.++|+.+.+.|+|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 45566666 5668899999999999999999977777776777776 66566543 46899999988887776
No 64
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.64 E-value=0.1 Score=38.79 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=49.8
Q ss_pred cEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE--ecCeecC---CccchhhcCCCCCcEEEEe
Q 025281 52 YLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI--YRGKERE---NGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 52 ~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi--yKGK~ld---D~~~L~~~GVkdgSkImLv 121 (255)
+.+|.|+ .+|.++...++++.|+++|.+-|.....- +..-.|+ |-.+.+. ++.+|.++|+. ++.+++.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 4455555 45688899999999999999999876543 5556676 5556553 47899999999 5666553
No 65
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.0093 Score=53.85 Aligned_cols=70 Identities=20% Similarity=0.399 Sum_probs=59.5
Q ss_pred cEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 52 YLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 52 ~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
..++++..-++-+-+.++...|++++|..|....|+.|-.|+++|.|+.+-|...|..+++.+|++-.+.
T Consensus 147 ~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 147 ILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred chHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence 3455555444556677888899999999999999999999999999999999999999999999776554
No 66
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.13 Score=41.36 Aligned_cols=73 Identities=8% Similarity=0.185 Sum_probs=65.1
Q ss_pred CCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 50 APYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
..-|+++|+ -++....+.|--++++.-|.+.-+...|++-...|++|-|+.+....+=..++.++|..|-++.
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 356899999 5566667888899999999999999999999999999999999988899999999999998774
No 67
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=95.27 E-value=0.048 Score=42.26 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=40.9
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCe
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGK 99 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK 99 (255)
-.|+|.|.. ++.|.+++..++.+|+++|.+..++|++..+|-||-.
T Consensus 3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 356677775 8999999999999999999999999999999999964
No 68
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=95.22 E-value=0.01 Score=56.91 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=47.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhccCCCCcchhhHhHHHHHHHHHHHHccCccccchhhHHHHHHHH
Q 025281 146 AISNVSMEVDKLVEQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISAEGDASAQKKLQGK 211 (255)
Q Consensus 146 ais~v~~eVdkLa~~v~a~e~~v~~g~kv~e~e~~~LsE~LM~qLLKLD~I~aeGd~R~qRK~~Vk 211 (255)
.|.+|..+|..|...|..| +++..++.+.+|-|+|.++||+||+|++. ++|..||..|+
T Consensus 286 ~V~~~~~~~~~~~~~v~sf------~g~~~~k~y~~~Ee~lt~~ll~ld~~d~~-~~~~ar~~~~~ 344 (344)
T KOG4361|consen 286 KVQQILEKVLELEGAVESF------EGPRTDKSYAKLEEFLTKNLLALDSVDPQ-SVRRARKEAVR 344 (344)
T ss_pred chhhHhhhhhhhhhhhhhc------CCCccchhHHHHHHhcccccchhhccCcc-hhhhhhhhhcC
Confidence 3555555555555555555 67778999999999999999999999999 99999998764
No 69
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=95.03 E-value=0.094 Score=40.39 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=40.0
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCC-CceeEEecC
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQA-GDQVLIYRG 98 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp-~~QKLiyKG 98 (255)
++|++.||+..+-+.++++.++.+|++.|+...++.. ....|-|..
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 5789999999999999999999999999999999975 556666654
No 70
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=94.88 E-value=0.088 Score=38.75 Aligned_cols=46 Identities=20% Similarity=0.363 Sum_probs=40.7
Q ss_pred EEEEEEeCCEEEEEEEc-CCCCHHHHHHHHHHhcCCCCCceeEEecC
Q 025281 53 LRLRIAFGALRYEISVN-SRATFGEVKKVLTGETGLQAGDQVLIYRG 98 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~-~~sTvgdLK~~l~~~TGVpp~~QKLiyKG 98 (255)
|.|++.|++..+.+.++ ...|+.+|+.+|....+++....+|-|+.
T Consensus 1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 46899999999999999 89999999999999999987666777765
No 71
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.61 E-value=0.28 Score=37.30 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=51.2
Q ss_pred CcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCC-CCceeEE--ecCeecC-CccchhhcCCCCCcEE
Q 025281 51 PYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQ-AGDQVLI--YRGKERE-NGEYLDMCRVKDRSKV 118 (255)
Q Consensus 51 ~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVp-p~~QKLi--yKGK~ld-D~~~L~~~GVkdgSkI 118 (255)
|+.+|.|. .+|.+....|+.+.||++|.+-|....+-+ .....|+ |-.|.+. ++.+|.++|+.+.+-+
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 45566666 456889999999999999999999876543 3456776 7777654 4789999999975443
No 72
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.84 E-value=0.6 Score=35.21 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=52.5
Q ss_pred cEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE--ecCeecCC---ccchhhcCCCCCcEEEE
Q 025281 52 YLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI--YRGKEREN---GEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 52 ~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi--yKGK~ldD---~~~L~~~GVkdgSkImL 120 (255)
..+|.|+ .+|.+....++++.|+.+|.+-|....+-+ ..-.|+ |--|.+.+ +.+|.++|+.+...|+|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 3455666 566889999999999999999998765543 456676 77777643 57999999999888876
No 73
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=92.98 E-value=0.33 Score=37.70 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=38.6
Q ss_pred EEEEEEeCCEEEEEEEcC--CCCHHHHHHHHHHhcCCCCCceeEEecCeecCCc
Q 025281 53 LRLRIAFGALRYEISVNS--RATFGEVKKVLTGETGLQAGDQVLIYRGKERENG 104 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~--~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~ 104 (255)
|+|++.|++.+.-+.+++ +.|+.+|++.+....+++ -|.=|-+||+
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~------~f~lKYlDde 48 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN------DIQIKYVDEE 48 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC------cceeEEEcCC
Confidence 689999999999999999 669999999999999999 2333456643
No 74
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=92.89 E-value=0.19 Score=38.12 Aligned_cols=59 Identities=22% Similarity=0.239 Sum_probs=48.2
Q ss_pred EcCCCCHHHHHHHHHHhcCC-CCCceeEEecCeecCCccchhhc-CCCCCcEEEEecCCch
Q 025281 68 VNSRATFGEVKKVLTGETGL-QAGDQVLIYRGKERENGEYLDMC-RVKDRSKVILTEDPAS 126 (255)
Q Consensus 68 v~~~sTvgdLK~~l~~~TGV-pp~~QKLiyKGK~ldD~~~L~~~-GVkdgSkImLv~~p~s 126 (255)
|+++.++.|+++.|...... .-..-.|.|+|+.++|-..|.++ |+++|++|.|+.+|=.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pYt 61 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPYT 61 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCCC
Confidence 46788999999999987664 44578899999999887777665 6999999999987753
No 75
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=92.76 E-value=0.55 Score=36.83 Aligned_cols=45 Identities=9% Similarity=0.197 Sum_probs=38.5
Q ss_pred cEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEec
Q 025281 52 YLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYR 97 (255)
Q Consensus 52 ~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyK 97 (255)
.|+|+|.|++....|.||++.++.+|...|.+..|+. +..+|=|+
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKyk 46 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMK 46 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEE
Confidence 5889999999999999999999999999999999995 34444444
No 76
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=0.086 Score=50.71 Aligned_cols=64 Identities=27% Similarity=0.218 Sum_probs=45.9
Q ss_pred CCcEEEEEEeCCEEEE-EEE--cCCCCHHHHHHHHHHhcCCCC--CceeEEecCeecCCccchhhcCCC
Q 025281 50 APYLRLRIAFGALRYE-ISV--NSRATFGEVKKVLTGETGLQA--GDQVLIYRGKERENGEYLDMCRVK 113 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~~-I~v--~~~sTvgdLK~~l~~~TGVpp--~~QKLiyKGK~ldD~~~L~~~GVk 113 (255)
+..+++.||...++|. ++| +..-|+++||..|+..-==-| .+|||||.||.+.|...|.+.=.|
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrk 75 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRK 75 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHH
Confidence 3456777776656664 454 455699999999887643322 379999999999998877765543
No 77
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.56 E-value=2.1 Score=33.21 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=56.1
Q ss_pred CCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE--ecCeec---CCccchhhcCCCCCcEEEE
Q 025281 50 APYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI--YRGKER---ENGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 50 ~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi--yKGK~l---dD~~~L~~~GVkdgSkImL 120 (255)
.|+-+|.|. .+|++.+-.+..+.|+.+|..-+.. -|.+++..+|+ |=-|.+ +.+.+|.++|+.+..+|++
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV 78 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEE
Confidence 455566666 4569999999999999999999888 57788999998 444443 4467999999999988877
No 78
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=90.85 E-value=1.1 Score=35.21 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=39.1
Q ss_pred EEEEEEeCCEEEEEEEcC-----CCCHHHHHHHHHHhcCCCC-CceeEEecC
Q 025281 53 LRLRIAFGALRYEISVNS-----RATFGEVKKVLTGETGLQA-GDQVLIYRG 98 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~-----~sTvgdLK~~l~~~TGVpp-~~QKLiyKG 98 (255)
+.|+|+|++..+-+.+|. +.++.+|+++|.+...+++ ..--|-|+.
T Consensus 1 l~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 1 LVVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred CEEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 368999999999999995 6899999999999999988 455566765
No 79
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.51 E-value=2.5 Score=32.23 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=53.8
Q ss_pred CcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE--ecCeec---CCccchhhcCCCCCcEEEE
Q 025281 51 PYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI--YRGKER---ENGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 51 ~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi--yKGK~l---dD~~~L~~~GVkdgSkImL 120 (255)
+.++|.|. .+|.+..-.++++.|+.+|..-+... |.+++..+|+ |==|.+ +.+.+|.++|+.....|++
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 55666666 34588888999999999999999764 8888889997 555554 3367999999997777765
No 80
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.32 E-value=3 Score=32.17 Aligned_cols=68 Identities=6% Similarity=-0.032 Sum_probs=50.8
Q ss_pred cEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecC--eecC--------CccchhhcCCCCCcEEEE
Q 025281 52 YLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRG--KERE--------NGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 52 ~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKG--K~ld--------D~~~L~~~GVkdgSkImL 120 (255)
.++|.|. .+|.+..-.|+.+.|+.+|..-|.. .+-.|+...|++.= |.+. .+.+|.++|+.+...|++
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 4566666 4568899999999999999999965 45566888887532 4553 367999999997666554
No 81
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=89.39 E-value=2.1 Score=33.77 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=42.2
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCe----e-cC-CccchhhcCCCCCcEEEE
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGK----E-RE-NGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK----~-ld-D~~~L~~~GVkdgSkImL 120 (255)
..+...|....||+.+...+.++..| +++-||--++- + |. .+.+|.++|+.+|..|+|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli 77 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI 77 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE
Confidence 46778899999999999999999999 77789864432 2 44 457999999999997765
No 82
>PRK06437 hypothetical protein; Provisional
Probab=88.83 E-value=2.8 Score=30.78 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=45.1
Q ss_pred EEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 55 LRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 55 V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|+|. |+...+++++...|+.+|=+. .|+++...-+...|.... .++-|++|.+|-++.
T Consensus 5 ~~v~-g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 5 IRVK-GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred EEec-CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 3444 767788888888999887655 489998888888888776 555778999998874
No 83
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=88.24 E-value=1 Score=39.23 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=41.6
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcCCCCCcee-EEe-cCeec--CCccchhhcCCCCCc
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETGLQAGDQV-LIY-RGKER--ENGEYLDMCRVKDRS 116 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QK-Liy-KGK~l--dD~~~L~~~GVkdgS 116 (255)
.++.+.+|+.+|+.+|+..|.+.+++|+..|- |.+ .|+.+ .++..++.+--.+..
T Consensus 15 ~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 15 PTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 57889999999999999999999999999864 333 24443 566777766655543
No 84
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=88.05 E-value=1.2 Score=34.45 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=34.2
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecC
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRG 98 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKG 98 (255)
-++.|.+++-+++.+|..+|++...++++.-+|-|+-
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 4577889999999999999999999999999999985
No 85
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=86.07 E-value=2.1 Score=33.37 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=39.6
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEec
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYR 97 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyK 97 (255)
+.++|+|++.+.-+.++..-|+..|+++|..+..+|+...-|-|=
T Consensus 1 ~~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi 45 (82)
T cd06397 1 TQFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI 45 (82)
T ss_pred CeEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE
Confidence 367899999999999999999999999999999999887555554
No 86
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=84.88 E-value=3.7 Score=32.94 Aligned_cols=68 Identities=10% Similarity=0.231 Sum_probs=57.5
Q ss_pred CcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEE
Q 025281 51 PYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKV 118 (255)
Q Consensus 51 ~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkI 118 (255)
.-|.++|. .++...-..|--++||.-|-+..+...|=.....|++|.|+..+-+++=.+++..++..|
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~i 91 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEI 91 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHH
Confidence 35778887 566767777888899999999999999999999999999999888888888888777654
No 87
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=84.75 E-value=17 Score=38.49 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=47.6
Q ss_pred eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCee--cCCccchhhcCCCCCcEEEEec
Q 025281 59 FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKE--RENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 59 ~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~--ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.....|.++++++.|+..|+..|+..||+|.+.|-|+|-|.. +.|.....--| -.+-|.|+.
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~~~~~Q~~~dg--~~~~l~l~~ 385 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSHLEDSAQCIPDG--LDSPLYLVS 385 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccccCcccccCCCC--CCCceEEEe
Confidence 456889999999999999999999999999999999999885 45533333333 224455554
No 88
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=84.69 E-value=8.2 Score=28.30 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=42.1
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|+|++-......+++++...|+.+|-+.| |++++.-.+...|.... ...-|++|++|-++.
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~ 65 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIP 65 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEc
Confidence 44444322224567788889999988775 78887766677777654 255589999998874
No 89
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=82.69 E-value=5.2 Score=29.10 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=41.9
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcC----CCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETG----LQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TG----Vpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|.....++++..+|+.+|.+.|....+ .......+...|+..+ ...-|++|++|.++.
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p 75 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP 75 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC
Confidence 444567788888999999999988753 2334556667777655 345689999999884
No 90
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=82.64 E-value=3.1 Score=38.94 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=42.8
Q ss_pred EEEcCCCCHHHHHHHHH-HhcCCCCCceeEE----ecCeecCCccchhhcCCCCCcEEEEe
Q 025281 66 ISVNSRATFGEVKKVLT-GETGLQAGDQVLI----YRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 66 I~v~~~sTvgdLK~~l~-~~TGVpp~~QKLi----yKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
..++...|++|+++.+. ....+-|.+||+- -||+-+-|+.+|++||+.+|.+|.+-
T Consensus 17 ~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 17 KDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred ecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 44556779999997665 4456777666554 46888888999999999999888773
No 91
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=81.05 E-value=7.6 Score=38.54 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=57.0
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCC------CCceeEE-ecCeecCCccchhhcCCCCCcEEEEec
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQ------AGDQVLI-YRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVp------p~~QKLi-yKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.+|+|..+....++-+|.+..+.||--.|-...|=. +..=.|- -.|..++.+.+|.+.||.||+.++|..
T Consensus 3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 3 CRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred EEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 578999998899999999999999999999888742 1222232 345568999999999999999999985
No 92
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=78.57 E-value=0.66 Score=44.13 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCcEEEEEEeC-CEEEEEEEcC-----CCCHHHHHHHHHH----------hcCCCCCcee-----EEecCeecCCccchh
Q 025281 50 APYLRLRIAFG-ALRYEISVNS-----RATFGEVKKVLTG----------ETGLQAGDQV-----LIYRGKERENGEYLD 108 (255)
Q Consensus 50 ~~~I~V~Vk~g-~~~~~I~v~~-----~sTvgdLK~~l~~----------~TGVpp~~QK-----LiyKGK~ldD~~~L~ 108 (255)
...|.|++|.- .-.++|.++. +.|+.|+|..+++ .++||.+..| |+|+-|-.-|..+|.
T Consensus 76 ~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~ 155 (309)
T PF12754_consen 76 SKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLA 155 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHH
Confidence 34577777743 2334454432 4699999999999 9999999888 999998776665555
Q ss_pred hcCCC-----------CCcEEEEecC
Q 025281 109 MCRVK-----------DRSKVILTED 123 (255)
Q Consensus 109 ~~GVk-----------dgSkImLv~~ 123 (255)
+..-. -..-+|++|.
T Consensus 156 e~l~~~~~~l~~~~~~vE~gvMVlGG 181 (309)
T PF12754_consen 156 EVLADSESRLLSGGKEVEFGVMVLGG 181 (309)
T ss_dssp --------------------------
T ss_pred HHHhcccchhccCCceEEEEEEEECC
Confidence 44333 1245677774
No 93
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=78.55 E-value=3.5 Score=40.22 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=55.8
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCC--ccchhhcCCCCCcEEEEec
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKEREN--GEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD--~~~L~~~GVkdgSkImLv~ 122 (255)
.-++++|.+...-.+..|+..+...+|++.+..-|+|.++.+.+ ...|..+|++++..+++=.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ 75 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRC 75 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccC
Confidence 45677888888889999999999999999999999999998654 5789999999999999853
No 94
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=77.23 E-value=9.6 Score=29.84 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=39.1
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-ceeEEecC
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAG-DQVLIYRG 98 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~-~QKLiyKG 98 (255)
|+|++.|+|.-+-..++++.|+.+|.+.+.+.-..+.+ -..+-|+.
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~D 47 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWID 47 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 57899999999999999999999999999999998654 45555554
No 95
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=77.16 E-value=14 Score=27.47 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=41.2
Q ss_pred EEEEEEe--------CCEEEEEEEcCCCCHHHHHHHHHHhc-CCCC--CceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 53 LRLRIAF--------GALRYEISVNSRATFGEVKKVLTGET-GLQA--GDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 53 I~V~Vk~--------g~~~~~I~v~~~sTvgdLK~~l~~~T-GVpp--~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
++|+|+| |....+++++..+|+.+|.+.|...- ++.. ..-.+...|+..+ .+.=|++|++|-++
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 4667765 33556788888899999999987653 1111 1112445555443 23457999999988
Q ss_pred c
Q 025281 122 E 122 (255)
Q Consensus 122 ~ 122 (255)
.
T Consensus 77 P 77 (82)
T PLN02799 77 P 77 (82)
T ss_pred C
Confidence 5
No 96
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=76.11 E-value=14 Score=30.82 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=40.6
Q ss_pred EcC-CCCHHHHHHHHH----HhcCCCC------CceeEEecCe-----------------ec---CCccchhhcCCCCCc
Q 025281 68 VNS-RATFGEVKKVLT----GETGLQA------GDQVLIYRGK-----------------ER---ENGEYLDMCRVKDRS 116 (255)
Q Consensus 68 v~~-~sTvgdLK~~l~----~~TGVpp------~~QKLiyKGK-----------------~l---dD~~~L~~~GVkdgS 116 (255)
|+. +.|+++|++.+. ...|++| +..||+.+-- .+ +++.+|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 789999887655 4577776 3577775531 23 456679999999999
Q ss_pred EEEEecC
Q 025281 117 KVILTED 123 (255)
Q Consensus 117 kImLv~~ 123 (255)
.|-+..-
T Consensus 102 EiSfF~~ 108 (122)
T PF10209_consen 102 EISFFNM 108 (122)
T ss_pred eeeeeCH
Confidence 9998753
No 97
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=75.56 E-value=7.7 Score=30.81 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=31.9
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEe
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIY 96 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiy 96 (255)
||.++-|.|+-+.|+.+|+.+|++.++++.. ..|=|
T Consensus 21 GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 21 GGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred CCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 7899999999999999999999999999876 55544
No 98
>PRK01777 hypothetical protein; Validated
Probab=73.35 E-value=44 Score=26.42 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=44.8
Q ss_pred CcEEEEEEeC--CE--EEEEEEcCCCCHHHHHHHHHHhcCCCCC--c-----eeEEecCeecCCccchhhcCCCCCcEEE
Q 025281 51 PYLRLRIAFG--AL--RYEISVNSRATFGEVKKVLTGETGLQAG--D-----QVLIYRGKERENGEYLDMCRVKDRSKVI 119 (255)
Q Consensus 51 ~~I~V~Vk~g--~~--~~~I~v~~~sTvgdLK~~l~~~TGVpp~--~-----QKLiyKGK~ldD~~~L~~~GVkdgSkIm 119 (255)
.+|.|.|.|. .. ...++++..+|+.++=.. .||+.+ . -++...|+..+-+. -|++|..|-
T Consensus 2 ~~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~~d~-----~L~dGDRVe 72 (95)
T PRK01777 2 GKIRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAKLTD-----VLRDGDRVE 72 (95)
T ss_pred CeeEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECCCCC-----cCCCCCEEE
Confidence 4688888874 22 245788999999987665 477655 2 36777888765443 569999999
Q ss_pred Eec
Q 025281 120 LTE 122 (255)
Q Consensus 120 Lv~ 122 (255)
+..
T Consensus 73 Iyr 75 (95)
T PRK01777 73 IYR 75 (95)
T ss_pred Eec
Confidence 986
No 99
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.33 E-value=6.3 Score=38.29 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=52.2
Q ss_pred EEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEec---Cee-----cCCccchhhcCCCCCcEEEEe
Q 025281 54 RLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYR---GKE-----RENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 54 ~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyK---GK~-----ldD~~~L~~~GVkdgSkImLv 121 (255)
++...+....-.+.|.-+-||-||+..|...-||-+.+.||+|= ||. .+-+.+|+.|.|.+|..+++=
T Consensus 340 k~l~~~~~v~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 340 KALNSGPKVIASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eeeccCCccccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 33333444445567777889999999999999999999999974 332 234679999999999998763
No 100
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=70.00 E-value=36 Score=25.40 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=38.8
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcC-----CC------CCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETG-----LQ------AGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TG-----Vp------p~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|.....|+++ .+|+.+|.+.|.+... +- -....+...|+..+.+.. .-|++|+.|.++.
T Consensus 14 g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~P 83 (88)
T TIGR01687 14 GKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFP 83 (88)
T ss_pred CCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeC
Confidence 3344567776 8999999999987753 10 012445566665543332 5689999999985
No 101
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=69.34 E-value=29 Score=24.70 Aligned_cols=59 Identities=7% Similarity=0.040 Sum_probs=41.2
Q ss_pred EEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 56 RIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 56 ~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+|.-+++.+++ + ..|+.+|...+ +++++...+-+.|.... .......-+++|++|-++.
T Consensus 2 ~i~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 2 KLFVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred EEEECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEE
Confidence 45557777776 3 35888888765 77776666778887654 3335566789999998874
No 102
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=65.93 E-value=36 Score=24.65 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=41.9
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcCCCC-CceeEEe----cCe--ecCCccchhhcCCC
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETGLQA-GDQVLIY----RGK--ERENGEYLDMCRVK 113 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp-~~QKLiy----KGK--~ldD~~~L~~~GVk 113 (255)
.+....+.+++++|+.+|=+.|+...||.. +-.=|.| .|. .++.+.+|.....+
T Consensus 5 D~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 5 DGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp SEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 457789999999999999999999999953 4566777 332 26778888888776
No 103
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=65.55 E-value=56 Score=27.28 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=45.5
Q ss_pred cEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-ceeEEecC------eecCCccchhhcCCC-CCcEEEE
Q 025281 52 YLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAG-DQVLIYRG------KERENGEYLDMCRVK-DRSKVIL 120 (255)
Q Consensus 52 ~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~-~QKLiyKG------K~ldD~~~L~~~GVk-dgSkImL 120 (255)
.+.|+|. .+|....|.+++++|+.++-..++...||+.. .--|.+.. ..++....|.....+ ...++.+
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~f 80 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYF 80 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEE
Confidence 3445555 34577899999999999999999999999542 23343322 125555666666665 3445544
No 104
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=64.63 E-value=21 Score=27.92 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=39.5
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC---ceeEEecCeecCCccchhhcCCCCCcEEEEecCCc
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETGLQAG---DQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPA 125 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~---~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p~ 125 (255)
.|..|-+.+.++..+.+|++.|++..|+... .-.|.|- || +|..|+|.-|..
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl----DD----------EgD~VllT~D~D 63 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV----DD----------EGDIVLITSDSD 63 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE----cC----------CCCEEEEeccch
Confidence 5688999999999999999999999999874 5555553 32 346777765543
No 105
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.49 E-value=4.6 Score=40.67 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=59.2
Q ss_pred CcEEEEEEeCCEE---EEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 51 PYLRLRIAFGALR---YEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 51 ~~I~V~Vk~g~~~---~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.|+.|+..+.++. ..+.-.-+-|-.+|...|+...||+....|.|..||.+.-..+|.+-|++.+.++|++.
T Consensus 36 at~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~ 110 (568)
T KOG2561|consen 36 ATESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAV 110 (568)
T ss_pred cceeeEeccccccchhhhhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHh
Confidence 4677776644332 12444556688999999999999999999999999999999999999999999999885
No 106
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=63.56 E-value=44 Score=25.76 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=45.2
Q ss_pred eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEe--cCeecCCccchhhcCCCCCcEEEEec
Q 025281 59 FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIY--RGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 59 ~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiy--KGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+...+|=|-. .++.||+....+..+|+.+.-+|.. -|-+.+|++++.. +.++..+|++.
T Consensus 11 ~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~lm~L~ 71 (78)
T PF02017_consen 11 DRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--LPDNTVLMLLE 71 (78)
T ss_dssp TSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--SSSSEEEEEEE
T ss_pred CCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--CCCCCEEEEEC
Confidence 3445555543 5799999999999999987777764 6778999988864 57888999886
No 107
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=63.27 E-value=32 Score=24.52 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=38.8
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 65 EISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 65 ~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+++++...|+.+|.+.+ ++++....+.+.|+....+ ..+..-|++|++|-++.
T Consensus 8 ~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 8 PREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVT 60 (65)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 34456678999888775 5888888888999875433 34445689999998874
No 108
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=62.28 E-value=23 Score=34.77 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=50.2
Q ss_pred CCCCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCC-CceeEE--ecCeec-CCccchhhcCCCCCcEE
Q 025281 48 VPAPYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQA-GDQVLI--YRGKER-ENGEYLDMCRVKDRSKV 118 (255)
Q Consensus 48 ~~~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp-~~QKLi--yKGK~l-dD~~~L~~~GVkdgSkI 118 (255)
+..|+-+|.|.. +|.+....|+-+-||.|++.-|...-.--+ .-|-|+ |=-|.+ |++.+|..+||.|-.-|
T Consensus 301 ~~~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 301 PAEPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CCCCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 445554444442 347788899999999999999987654433 356665 566765 56889999999986543
No 109
>PF10768 FliX: Class II flagellar assembly regulator; InterPro: IPR019704 The FliX protein is possibly a transient component of the flagellum that is required for the assembly process. FliX may contribute to the targeting or assembly of the P- and L-ring protein monomers at the cell pole. The family carries a potential N-terminal signal sequence and at least one transmembrane domain indicating that it might function either in or in association with the cell membrane [].
Probab=61.94 E-value=11 Score=32.11 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=28.6
Q ss_pred HHHHccCccccchhhHHHHHHHHHHHHHHHHHhHhhhh
Q 025281 189 QAIKLDSISAEGDASAQKKLQGKRVQKCVETLDLLKIA 226 (255)
Q Consensus 189 qLLKLD~I~aeGd~R~qRK~~VkrVQ~~le~LD~~k~~ 226 (255)
.||.|=+| .|....||..|+|=..+|+.||.+|+-
T Consensus 55 aLLALQ~v---dd~~erRrRav~Rg~~lLD~Ld~Lk~~ 89 (139)
T PF10768_consen 55 ALLALQEV---DDPTERRRRAVRRGHDLLDVLDELKIG 89 (139)
T ss_pred HHHHHhhc---cChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777 356667999999999999999999973
No 110
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=61.26 E-value=63 Score=26.01 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=36.0
Q ss_pred EEEEEeC-CEEEEEEEcCCCCHHHHHHHHHHhcCCCCC--ceeEEecCe
Q 025281 54 RLRIAFG-ALRYEISVNSRATFGEVKKVLTGETGLQAG--DQVLIYRGK 99 (255)
Q Consensus 54 ~V~Vk~g-~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~--~QKLiyKGK 99 (255)
.|+|=.. +....+..+.++|+.||-..|...+.+++. -|-++++|.
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~ 52 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHD 52 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECC
Confidence 4566543 455679999999999999999999999874 366677775
No 111
>PRK12787 fliX flagellar assembly regulator FliX; Reviewed
Probab=60.98 E-value=12 Score=31.86 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=28.1
Q ss_pred HHHccCccccchhhHHHHHHHHHHHHHHHHHhHhhhh
Q 025281 190 AIKLDSISAEGDASAQKKLQGKRVQKCVETLDLLKIA 226 (255)
Q Consensus 190 LLKLD~I~aeGd~R~qRK~~VkrVQ~~le~LD~~k~~ 226 (255)
||.|-+| +|.-..||-.|+|=..+|+.||.+|+-
T Consensus 54 LLALQ~v---dd~~eRRrRav~Rg~~~LD~Ld~Lk~a 87 (138)
T PRK12787 54 LLALQGV---EDPTERRRRSVRRGETALDVLDELKIG 87 (138)
T ss_pred HHHHhcc---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667665 466667999999999999999999973
No 112
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=59.78 E-value=66 Score=24.82 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=45.9
Q ss_pred EEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE--ecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI--YRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi--yKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+|+-.+...+|-|- + .|+.||+....+..++|...-+|. --|-+.+|++++..+ -++..+|+++
T Consensus 6 kV~~~~r~~k~GV~--A-~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tL--p~nT~l~~l~ 71 (78)
T cd01615 6 KVCDSDRSRKKGVA--A-SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTL--PDNTVLMLLE 71 (78)
T ss_pred EEecCCCCeeEEEE--c-CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcC--CCCcEEEEEC
Confidence 33333344444443 2 469999999999999976665554 467789999988764 7888888886
No 113
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=58.91 E-value=60 Score=23.89 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=38.8
Q ss_pred EEEEEEEcCC-CCHHHHHHHHHHhcC-CCC--CceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 62 LRYEISVNSR-ATFGEVKKVLTGETG-LQA--GDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 62 ~~~~I~v~~~-sTvgdLK~~l~~~TG-Vpp--~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
....++++.. +|+.+|.+.|.+.-+ +.. ....+...|+...+ ..-|++|+.|.++.
T Consensus 16 ~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~P 75 (80)
T TIGR01682 16 DEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIP 75 (80)
T ss_pred CeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeC
Confidence 3456788877 899999999988753 211 22345566665553 46789999999885
No 114
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=57.13 E-value=79 Score=24.46 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=47.6
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeE--EecCeecCCccchhhcCCCCCcEEEEec
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVL--IYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKL--iyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.+|.-.+...+|-|-. .++.||+.+..+..+++...-+| ---|-+.||++++..+ -+++.+|++.
T Consensus 5 fkV~~~~r~~k~GV~A---~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~L--pdnT~lm~L~ 71 (78)
T cd06539 5 FRVSNHDRSSRRGVMA---SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTL--GDNTHFMVLE 71 (78)
T ss_pred EEEecCCCCceEEEEe---cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhC--CCCCEEEEEC
Confidence 3444344444555542 47999999999999998665555 4567789999988764 7899999986
No 115
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=55.39 E-value=57 Score=23.44 Aligned_cols=58 Identities=7% Similarity=0.156 Sum_probs=40.1
Q ss_pred EEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 57 IAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 57 Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|.-+|+.+++ ++..|+.+|=.. .|+++..--+.+.|......+. +.+ +++|.+|-++.
T Consensus 3 i~vNG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 3 VVVNEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVT 60 (65)
T ss_pred EEECCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEe
Confidence 4446666555 466787766544 5899999999999986443332 345 99999998873
No 116
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=53.75 E-value=55 Score=23.24 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=37.5
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 65 EISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 65 ~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+++++...|+.+|.+.+ ++++...-+.+.|..... .....+-|++|++|-++.
T Consensus 7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~-~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPR-SEWDDTILKEGDRIEIVT 59 (64)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCceecCCCCEEEEEE
Confidence 34556778899888764 678877777888876532 224445689999998874
No 117
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=53.41 E-value=97 Score=23.73 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHhcCCCCCceeEE-e-cCeecCCccchhhcCCCCCcEEEEec
Q 025281 72 ATFGEVKKVLTGETGLQAGDQVLI-Y-RGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 72 sTvgdLK~~l~~~TGVpp~~QKLi-y-KGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.|+.+|+....+..++|...-+|. + -|-+.+|++++.. +-++..+|++.
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp~nt~l~~L~ 69 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LPDNTELMALE 69 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CCCCcEEEEEc
Confidence 479999999999999997666663 3 6878999998875 47888888875
No 118
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=51.59 E-value=32 Score=26.54 Aligned_cols=57 Identities=14% Similarity=0.344 Sum_probs=32.6
Q ss_pred EEEcC-CCCHHHHHHHH-HHhcCCCC-C---ceeEEecCee---cC-CccchhhcCCCCCcEEEEec
Q 025281 66 ISVNS-RATFGEVKKVL-TGETGLQA-G---DQVLIYRGKE---RE-NGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 66 I~v~~-~sTvgdLK~~l-~~~TGVpp-~---~QKLiyKGK~---ld-D~~~L~~~GVkdgSkImLv~ 122 (255)
|.++. .+|+++|-+.+ ....|+.. + ..++||-.-. -+ .+.+|+.+||++||.|.+..
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D 68 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDD 68 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEE
Confidence 44553 57999999965 55777754 2 4566666654 12 25689999999999887754
No 119
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=50.09 E-value=35 Score=30.25 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCHHHHHHHHHHhcCCCCC-ceeE----EecCee---cCCccchhhc
Q 025281 63 RYEISVNSRATFGEVKKVLTGETGLQAG-DQVL----IYRGKE---RENGEYLDMC 110 (255)
Q Consensus 63 ~~~I~v~~~sTvgdLK~~l~~~TGVpp~-~QKL----iyKGK~---ldD~~~L~~~ 110 (255)
.|.+.+|.+.||+||-+.+....+++.+ .++| ++.||. +..+..|...
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 5778899999999999999999999776 3444 477775 5667777666
No 120
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=50.09 E-value=88 Score=22.03 Aligned_cols=60 Identities=8% Similarity=0.078 Sum_probs=40.6
Q ss_pred EEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 56 RIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 56 ~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+|..+|+.+ +++...|+.+|=.. .|+++..--+-+.|....-. .....=|++|.+|-++.
T Consensus 2 ~i~vNG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 2 NIQLNGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVH 61 (66)
T ss_pred EEEECCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEE
Confidence 345466655 55667888776544 58998888888998764422 23444579999988763
No 121
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=49.14 E-value=66 Score=22.88 Aligned_cols=58 Identities=16% Similarity=0.066 Sum_probs=44.3
Q ss_pred EEEEEEcCCCCHHHHHHHHHHhcCC--CCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 63 RYEISVNSRATFGEVKKVLTGETGL--QAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 63 ~~~I~v~~~sTvgdLK~~l~~~TGV--pp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
...+.++...|+++|.+.|.....- ....-.+...|+...+ .....-|++|++|.++.
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC
Confidence 4567888999999999998776531 2356778888887766 35566779999999885
No 122
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=48.60 E-value=93 Score=24.31 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=44.4
Q ss_pred CEEEEEEEcCCCCHHHHHHHHHHhcCCCCCcee-EEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 61 ALRYEISVNSRATFGEVKKVLTGETGLQAGDQV-LIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 61 ~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QK-LiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
..+|.+.|++.+|=-++|+.|+.+.||++..-. +++.||.+.... -.|-+.+-|-+.+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr~~~---~~g~~~~~KKA~V 78 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGR---RIGKRSDWKKAIV 78 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceeeecc---cccccCCcEEEEE
Confidence 368999999999999999999999999997644 568888754332 2566666665554
No 123
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=47.82 E-value=1.3e+02 Score=23.46 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=46.1
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-ceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAG-DQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~-~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.+|.-.+...++-|-. .++.||+....+..+++.. ..-|---|-+.||++++..+ .+++.+|++.
T Consensus 5 fkv~~~~r~~kkGV~A---~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~tL--pdnT~lm~L~ 70 (81)
T cd06537 5 FRVCDHKRTVRKGLTA---ASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELL--EDDTCLMVLE 70 (81)
T ss_pred eEEecCCCCeeEeEEc---cCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhhC--CCCCEEEEEC
Confidence 3444444445555542 4799999999999999733 33334567789999988764 7999999996
No 124
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=46.48 E-value=77 Score=23.20 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 025281 205 QKKLQGKRVQKCVETLDL 222 (255)
Q Consensus 205 qRK~~VkrVQ~~le~LD~ 222 (255)
+|+.++++|+..|+.++.
T Consensus 22 ~r~~~i~~~e~~l~ea~~ 39 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEE 39 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555554443
No 125
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=45.44 E-value=1e+02 Score=21.53 Aligned_cols=58 Identities=12% Similarity=0.108 Sum_probs=36.1
Q ss_pred EEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 57 IAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 57 Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|.-+++.+ +++...|+.+|-+.+ +++ ....+.+.|....... ....=+++|++|-++.
T Consensus 3 i~vNg~~~--~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 3 IQLNQQTL--SLPDGATVADALAAY----GAR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQ 60 (65)
T ss_pred EEECCEEE--ECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEe
Confidence 44455544 556778999888765 443 2356677777643222 2233489999998874
No 126
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=44.00 E-value=35 Score=27.89 Aligned_cols=35 Identities=31% Similarity=0.311 Sum_probs=23.4
Q ss_pred HccCccccchhhHHHHHHHHHHHHHHHHHhHhhhh
Q 025281 192 KLDSISAEGDASAQKKLQGKRVQKCVETLDLLKIA 226 (255)
Q Consensus 192 KLD~I~aeGd~R~qRK~~VkrVQ~~le~LD~~k~~ 226 (255)
.||+++++.+++..+--++..|-.+..+||.+..+
T Consensus 44 ~l~a~e~~~d~~EEKaRlItQVLELQnTLdDLSqR 78 (120)
T KOG3650|consen 44 DLDAVEAENDVEEEKARLITQVLELQNTLDDLSQR 78 (120)
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888887766666666666666666555443
No 127
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=43.26 E-value=29 Score=30.80 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=20.1
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcCCCCC
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETGLQAG 90 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TGVpp~ 90 (255)
.-+-+-|.+..||+++|++|...+||+..
T Consensus 133 iPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 133 IPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred CCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 45556778899999999999999999874
No 128
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=42.65 E-value=1.6e+02 Score=22.73 Aligned_cols=63 Identities=6% Similarity=0.075 Sum_probs=43.4
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+.++|.-+|+.+++ +...|+.+|=.. .++++..-=+-+.|.... .......-|++|++|-++.
T Consensus 17 ~~m~I~VNG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 17 VLITISINDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred ceEEEEECCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEE
Confidence 34555557776665 556777766554 478877777778887653 4456777799999998873
No 129
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=42.60 E-value=1.3e+02 Score=23.36 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=44.9
Q ss_pred EEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCc--eeE--EecCeecCCccchhhcCCCCCcEEEEec
Q 025281 55 LRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGD--QVL--IYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 55 V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~--QKL--iyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|+-.+...+|-|-. .|+.+|+....+..++|... -+| ---|-+.+|++++..+ -+++.+|++.
T Consensus 7 V~~~~r~~k~GV~A---~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tL--p~nT~l~~L~ 73 (80)
T cd06536 7 VCNVSRQKQHGVAA---SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCL--PPNTKFVLLA 73 (80)
T ss_pred EecCCCCeeEeEEc---CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhC--CCCcEEEEEC
Confidence 33334445554442 47999999999999998432 444 3467789999988764 7888999886
No 130
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=42.25 E-value=1.1e+02 Score=23.90 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=33.9
Q ss_pred EEEEEeCCEEEEEEEcCC-CCHHHHHHHHHHhcC--CCCCceeEE-ecC
Q 025281 54 RLRIAFGALRYEISVNSR-ATFGEVKKVLTGETG--LQAGDQVLI-YRG 98 (255)
Q Consensus 54 ~V~Vk~g~~~~~I~v~~~-sTvgdLK~~l~~~TG--Vpp~~QKLi-yKG 98 (255)
-|++.||+...-+.++.. -|+.+|...++.... +|+...=+| |+.
T Consensus 2 iiK~~~g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD 50 (81)
T cd06401 2 ILKAQLGDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKD 50 (81)
T ss_pred eEEEEeCCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEEC
Confidence 478889999999998875 599999999998877 444444444 544
No 131
>PRK08453 fliD flagellar capping protein; Validated
Probab=41.47 E-value=42 Score=35.32 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=36.2
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhc-----------CCCCCceeEEecCeec
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGET-----------GLQAGDQVLIYRGKER 101 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~T-----------GVpp~~QKLiyKGK~l 101 (255)
..|...|+|++|.|+|++..|+.+|+.+|-..+ | ...--+|+++|+..
T Consensus 129 ~~~~~~~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~et 187 (673)
T PRK08453 129 TTLKFYTQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNT 187 (673)
T ss_pred ceEEEEECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCc
Confidence 457778899999999999999999999998533 3 11136677776653
No 132
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=41.34 E-value=87 Score=24.01 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=39.4
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEe-cCeecCCccchhhcCCCCCcEEEEec
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIY-RGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiy-KGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
......++..+|++|+=+ ..|||+.+-.+|+ .|+..+- +|-+++|..|.+..
T Consensus 23 ~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 23 GPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 456677888999998765 4899999998886 5554442 37789999998864
No 133
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=39.32 E-value=1.8e+02 Score=22.60 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHhcCCCCC-ceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 72 ATFGEVKKVLTGETGLQAG-DQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 72 sTvgdLK~~l~~~TGVpp~-~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.|+.+|+....+..+++.. ..-|---|-+.+|++++..+ -++..+|+++
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tL--p~nt~l~vL~ 70 (79)
T cd06538 21 DSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQAL--ADNTVFMVLG 70 (79)
T ss_pred CCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhC--CCCcEEEEEC
Confidence 4699999999999999632 23334567789999988764 6888888886
No 134
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=38.23 E-value=62 Score=25.09 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=41.2
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcCCCCCce-eEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETGLQAGDQ-VLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~Q-KLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
..|.+.|++.+|=-++|+.|+.+.||++..- -+++.||........ |-+.+-|-+.|
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~---g~~~~~KKaiV 78 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFV---GKTKDYKKAIV 78 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCE---EEE-EEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCcc---ccCCCcEEEEE
Confidence 5789999999999999999999999999764 456888874432222 44444444444
No 135
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=37.91 E-value=41 Score=27.84 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHhcCCCCCceeEEecCeec-CCc-cchhhcCCCCCcEEEEec-CCch-hhhHhHHHhhhHHHHhHHHh
Q 025281 71 RATFGEVKKVLTGETGLQAGDQVLIYRGKER-ENG-EYLDMCRVKDRSKVILTE-DPAS-IERRFIEMRRNAKIQSAHRA 146 (255)
Q Consensus 71 ~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~l-dD~-~~L~~~GVkdgSkImLv~-~p~s-~e~r~~e~kk~~~~~ka~~a 146 (255)
+.-++-+..-|++.+|+++---||+|---.+ --. -.|-.|-+ --+++. .|.. .+....+.+--..-+.+..+
T Consensus 10 ~~~i~GVcaGlA~y~gi~~~~VRl~~vl~~~~~~~~~~ll~Y~i----~w~~lp~~p~~~~~~~~~~~~~~~~~~~~~~~ 85 (121)
T TIGR02978 10 NGKIAGVCAGLADYFGVEVWLVRILVVSALLFGGGFFVLVAYIA----LWLLLDKKPINLYEDDDVKSKPWQAGQSPRQA 85 (121)
T ss_pred CCEehhHHHHHHHHHCcCHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHhcCccccccccccchhhhhcCCCHHHH
Confidence 3467888889999999999988887542111 000 00000100 000011 1211 00000011111112346778
Q ss_pred hhhhhHHHHHHHHHHHHHhhhccCCCCcchhhHhHH
Q 025281 147 ISNVSMEVDKLVEQVSAIEKSISNGVKVPEVQITTL 182 (255)
Q Consensus 147 is~v~~eVdkLa~~v~a~e~~v~~g~kv~e~e~~~L 182 (255)
+.++..+++.+..++..+|..|.+..-..+.||..|
T Consensus 86 l~~~~~~~~~~e~Rl~~mE~yVTS~~f~l~ref~~L 121 (121)
T TIGR02978 86 LREVKREFRDLERRLRNMERYVTSDTFRLRREFRNL 121 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHhcC
Confidence 999999999999999999999988776667776643
No 136
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=36.64 E-value=1.1e+02 Score=24.29 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=34.6
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcCC-CCCceeEE-ecCe-e--cCCcc
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETGL-QAGDQVLI-YRGK-E--RENGE 105 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TGV-pp~~QKLi-yKGK-~--ldD~~ 105 (255)
|-..-.+-|.|++|..+|-.++++...| .|+.-.|+ |++. . |.|++
T Consensus 12 gct~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~ 62 (87)
T cd01776 12 GCTGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDT 62 (87)
T ss_pred CceeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCccc
Confidence 4455678999999999999999999999 56666664 4443 2 55554
No 137
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=36.52 E-value=1.4e+02 Score=21.65 Aligned_cols=32 Identities=31% Similarity=0.302 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCHHHHHHHHHHhcCC--CCCceeE
Q 025281 63 RYEISVNSRATFGEVKKVLTGETGL--QAGDQVL 94 (255)
Q Consensus 63 ~~~I~v~~~sTvgdLK~~l~~~TGV--pp~~QKL 94 (255)
...|.|++++|..++-.++.+..|+ .|..-.|
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 6679999999999999999999999 3344555
No 138
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=36.30 E-value=99 Score=22.49 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=38.1
Q ss_pred EEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 57 IAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 57 Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|+.+++. +++....|+.+||..+..-.. =+||.|=..+++.. +++|+.|.|+.
T Consensus 3 I~vN~k~--~~~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~~d~~-----L~e~D~v~~Ik 55 (57)
T PF14453_consen 3 IKVNEKE--IETEENTTLFELRKESKPDAD------IVILNGFPTKEDIE-----LKEGDEVFLIK 55 (57)
T ss_pred EEECCEE--EEcCCCcCHHHHHHhhCCCCC------EEEEcCcccCCccc-----cCCCCEEEEEe
Confidence 4445444 455667899999999775443 57999987665554 58899999885
No 139
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=36.25 E-value=2.8e+02 Score=24.13 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=45.6
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeE-EecCeecCCccch--------hhcCCCCCcEEEEecCCchh
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETGLQAGDQVL-IYRGKERENGEYL--------DMCRVKDRSKVILTEDPASI 127 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKL-iyKGK~ldD~~~L--------~~~GVkdgSkImLv~~p~s~ 127 (255)
..|.+.|++.+|=-++|..|+.+.||.+..... +.+|+.+.-.... .-.-|.+|.+|-+.+....+
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~KR~g~~~G~~~~~KKAiVtL~~g~~I~~f~~~~~~ 97 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLGRFPGFTNSYKKAYVTLAEGYSINLFPEESEK 97 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcccccCCcccccCCcEEEEEECCCCCEeeccCCcchh
Confidence 579999999999999999999999999987555 4666654322211 01125667777666544443
No 140
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=35.61 E-value=15 Score=34.89 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=41.4
Q ss_pred EeCCEEEEEEEc-CCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCcc
Q 025281 58 AFGALRYEISVN-SRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGE 105 (255)
Q Consensus 58 k~g~~~~~I~v~-~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~ 105 (255)
.++|....+.+. ....+..||.++...++|++.-|++.|.|..++|+.
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~ 337 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNR 337 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccc
Confidence 356777777777 566899999999999999999999999999888773
No 141
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=35.03 E-value=50 Score=27.34 Aligned_cols=100 Identities=9% Similarity=-0.025 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHhcCCCCCceeEEecCeecCC--ccchhhcCCCCCcEEEEec-CCchhhhHhHHHhhhHHHHhHHHhh
Q 025281 71 RATFGEVKKVLTGETGLQAGDQVLIYRGKEREN--GEYLDMCRVKDRSKVILTE-DPASIERRFIEMRRNAKIQSAHRAI 147 (255)
Q Consensus 71 ~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD--~~~L~~~GVkdgSkImLv~-~p~s~e~r~~e~kk~~~~~ka~~ai 147 (255)
+.-++-+..=|++.+|+++---||+|---.+=. .-.+-.|-+ --+++. .|.. .... ..-..+..++
T Consensus 15 ~~~i~GVCaGiA~y~gi~~~~VRl~~vl~~~~~~~~~~~~~Yi~----l~~~lp~~P~~--~~~~-----~~~~s~~~~l 83 (118)
T PRK10697 15 QGMVKGVCAGIAHYFDVPVKLVRIIVVLSIFFGLFVFTLVAYII----LSFALDPMPDN--MAFG-----EQQPSSSELL 83 (118)
T ss_pred CCEEeeeHHHHHHHHCCCHHHHHHHHHHHHHHhhchHHHHHHHH----HHHhccCCccc--cccc-----ccCCCHHHHH
Confidence 345777888899999999998888753211000 000000100 000111 1221 0000 0112466778
Q ss_pred hhhhHHHHHHHHHHHHHhhhccCCCCcchhhHhH
Q 025281 148 SNVSMEVDKLVEQVSAIEKSISNGVKVPEVQITT 181 (255)
Q Consensus 148 s~v~~eVdkLa~~v~a~e~~v~~g~kv~e~e~~~ 181 (255)
.++..+++.+..++..+|..|.+..-..+.||..
T Consensus 84 ~~~~~~~~~~e~Rlr~mE~yVTS~~f~l~ref~~ 117 (118)
T PRK10697 84 DEVDRELAAGEQRLREMERYVTSDTFTLRSRFRQ 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhc
Confidence 8999999999999999999998877666666654
No 142
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=34.04 E-value=66 Score=29.22 Aligned_cols=70 Identities=11% Similarity=0.256 Sum_probs=45.4
Q ss_pred CcEEEEEEe---CCEEE----EEEEcCCCCHHHHHHHHHHhcCCCCCceeEEec----Cee--cCCccchhhcCCCCCcE
Q 025281 51 PYLRLRIAF---GALRY----EISVNSRATFGEVKKVLTGETGLQAGDQVLIYR----GKE--RENGEYLDMCRVKDRSK 117 (255)
Q Consensus 51 ~~I~V~Vk~---g~~~~----~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyK----GK~--ldD~~~L~~~GVkdgSk 117 (255)
..|-|=+|| ..++. .+.|+.++++.+|-..|.++.|+|++..=++|- ++. ++...++..+.+.+|+-
T Consensus 67 ~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdI 146 (249)
T PF12436_consen 67 DDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDI 146 (249)
T ss_dssp TEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEE
T ss_pred CcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCE
Confidence 356666664 22222 267899999999999999999999987777664 332 67889999999999986
Q ss_pred EEE
Q 025281 118 VIL 120 (255)
Q Consensus 118 ImL 120 (255)
|..
T Consensus 147 i~f 149 (249)
T PF12436_consen 147 ICF 149 (249)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 143
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=33.13 E-value=1.8e+02 Score=21.33 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=28.5
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcCCC--CCceeE
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETGLQ--AGDQVL 94 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TGVp--p~~QKL 94 (255)
++....|.|+.++|..++-..+.+..++. |..--|
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L 47 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYAL 47 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEE
Confidence 34667799999999999999999999997 444444
No 144
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=32.75 E-value=67 Score=27.67 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCcchhhHhHHHHHHHHHHHHccCccc
Q 025281 152 MEVDKLVEQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISA 198 (255)
Q Consensus 152 ~eVdkLa~~v~a~e~~v~~g~kv~e~e~~~LsE~LM~qLLKLD~I~a 198 (255)
.+++.|+++ +|..+...+ ..|..-..+.|++|..|-+||.|.-
T Consensus 82 e~ie~~v~~---Ie~~l~~~~-~~EI~S~~IGe~Vm~~L~~lD~VAY 124 (147)
T TIGR00244 82 DDLEHAINH---IEAQLRAQG-EREVPSELIGQMVMQYLKKLDEVAY 124 (147)
T ss_pred HHHHHHHHH---HHHHHHHcC-CCcccHHHHHHHHHHHHhhcCcchh
Confidence 344454443 555553222 2345557899999999999999854
No 145
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=30.92 E-value=1.3e+02 Score=22.51 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=37.9
Q ss_pred EEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCee
Q 025281 54 RLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKE 100 (255)
Q Consensus 54 ~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ 100 (255)
+|.... |+...|.+-|..|+.|+=..+.+.-|+.|+.--|.++|..
T Consensus 3 ~V~LPn-g~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~ 48 (72)
T cd01760 3 RVYLPN-GQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLD 48 (72)
T ss_pred EEECcC-CCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCC
Confidence 344333 4778899999999999999999999999999888888643
No 146
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=30.69 E-value=68 Score=24.39 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=28.2
Q ss_pred EEEEeCCEEEEEEEcCC-CCHHHHHHHHHHhcCC--CCCceeEEecC
Q 025281 55 LRIAFGALRYEISVNSR-ATFGEVKKVLTGETGL--QAGDQVLIYRG 98 (255)
Q Consensus 55 V~Vk~g~~~~~I~v~~~-sTvgdLK~~l~~~TGV--pp~~QKLiyKG 98 (255)
.+-++......|.|+.. -+++|||..|.+..++ ..+..=.||..
T Consensus 3 YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na 49 (74)
T PF08783_consen 3 YKFKSQKDYDTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNA 49 (74)
T ss_dssp EEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEES
T ss_pred EEecccCCccEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECC
Confidence 34444455567888854 5999999999888776 33344455554
No 147
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=30.67 E-value=19 Score=33.87 Aligned_cols=49 Identities=6% Similarity=-0.040 Sum_probs=41.6
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeec
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKER 101 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~l 101 (255)
|.+.-.+.+..+.++++...++-|.+..+...++|.+.-.||++.+-..
T Consensus 4 i~~~~~~~gn~i~ls~~~~~ri~D~~~~l~K~~~vss~~~kll~~~llk 52 (278)
T KOG4842|consen 4 IKTEGIKSGNAIYLSMAGSQRIPDKNPHLQKVAVVSSKPNKLLALNLLK 52 (278)
T ss_pred EEEEEEecCcEEEEEeccccccCCCCcccceeeeeccchHHHHhhhhhh
Confidence 3444446778899999999999999999999999999999999988543
No 148
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=30.29 E-value=2.3e+02 Score=20.98 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=30.0
Q ss_pred EEEcC-CCCHHHHHHHHHHhcCC-----CCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 66 ISVNS-RATFGEVKKVLTGETGL-----QAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 66 I~v~~-~sTvgdLK~~l~~~TGV-----pp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+++++ .+|+.+|++.|.+...- .....++...+..-.+ +.-|++|+.|.++.
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~P 76 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFP 76 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeC
Confidence 44443 47999999999877521 1111222233322121 23589999999885
No 149
>PRK12765 flagellar capping protein; Provisional
Probab=29.86 E-value=1.1e+02 Score=31.73 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=38.5
Q ss_pred CCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhc--CCCCC--------ceeEEecCee
Q 025281 50 APYLRLRIAFGALRYEISVNSRATFGEVKKVLTGET--GLQAG--------DQVLIYRGKE 100 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~T--GVpp~--------~QKLiyKGK~ 100 (255)
..++.+++.+++..+.|.|++..|+.+|...|-... ||... .-||++.++.
T Consensus 130 ~gt~tlti~~~g~~~tI~i~~~~TL~dl~~aIN~a~~~gV~Asiv~~g~~~~yrLvltS~~ 190 (595)
T PRK12765 130 TGETDLTIFSNGKEYTITVDKSTTYRDLADKINEASGGKIQAKILNVGGKNPYRLVLQSKE 190 (595)
T ss_pred CCceEEEEEeCCEEEEEEECCCCCHHHHHHHHhcCcCCceEEEEEEcCCCceEEEEEEecc
Confidence 345678888899999999999999999999997654 45332 1377777653
No 150
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=29.72 E-value=1.8e+02 Score=23.12 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=40.3
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 64 YEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 64 ~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
...+++-..+++.||..|+...|+.-+.--+..-...++++.+|-+-||+-.-.|-+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 4456777889999999999999999888888888888999999999999876666554
No 151
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=29.46 E-value=78 Score=27.54 Aligned_cols=63 Identities=27% Similarity=0.268 Sum_probs=38.0
Q ss_pred HHHHhhhccCCCCcchhhHhHHHHHHHHHHHHccCccccchhhHHHHHHHHHHHHHHHHHhHhhhh
Q 025281 161 VSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISAEGDASAQKKLQGKRVQKCVETLDLLKIA 226 (255)
Q Consensus 161 v~a~e~~v~~g~kv~e~e~~~LsE~LM~qLLKLD~I~aeGd~R~qRK~~VkrVQ~~le~LD~~k~~ 226 (255)
++.+|..+.+. -..|..-..+.|++|..|-+||-|.-=-=|..-|. .+.|-.|.+.|..++..
T Consensus 88 v~~ie~~Lr~~-g~~EV~S~~IG~~VM~~Lk~lD~VAYvRFASVYr~--F~dv~~F~e~i~~l~~~ 150 (156)
T COG1327 88 VSHIERQLRSS-GEREVPSKEIGELVMEELKKLDEVAYVRFASVYRS--FKDVDDFEEEIEELTKE 150 (156)
T ss_pred HHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHhcchhhhhhhhhHhcc--cCCHHHHHHHHHHHHhc
Confidence 44455544322 22345556789999999999999865222222232 34566677777777653
No 152
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=28.09 E-value=2e+02 Score=22.40 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=37.6
Q ss_pred EEEEEeCCEEEEEEEcCC--CCHHHHHHHHHHhcCCCCCceeEEecC
Q 025281 54 RLRIAFGALRYEISVNSR--ATFGEVKKVLTGETGLQAGDQVLIYRG 98 (255)
Q Consensus 54 ~V~Vk~g~~~~~I~v~~~--sTvgdLK~~l~~~TGVpp~~QKLiyKG 98 (255)
-|+.|++++..-++++.+ .++.++...|..+-.|+.-.--|-|-.
T Consensus 2 eVKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D 48 (80)
T cd06403 2 EVKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTD 48 (80)
T ss_pred ceecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeC
Confidence 478889999988888876 799999999999999997666666654
No 153
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=27.44 E-value=1.4e+02 Score=30.13 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=46.5
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCC--CCCceeEEe----cCee--cCCccchhhcCCCCCcEEEEe
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGL--QAGDQVLIY----RGKE--RENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGV--pp~~QKLiy----KGK~--ldD~~~L~~~GVkdgSkImLv 121 (255)
++++-+.| .+.+++.++.++|-|-.+|-.-..+ .|+..-+.- +|-. +..+.++.++|+++|.-+.|-
T Consensus 3 ~rfRsk~G--~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~ 77 (571)
T COG5100 3 FRFRSKEG--QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLE 77 (571)
T ss_pred EEEecCCC--ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEE
Confidence 34555544 5789999999999988877665544 344444332 2321 455788999999999998885
No 154
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=27.32 E-value=81 Score=26.28 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=26.7
Q ss_pred EEcCCCCHHHHHHHHHHhcCCCCCceeEEecCe
Q 025281 67 SVNSRATFGEVKKVLTGETGLQAGDQVLIYRGK 99 (255)
Q Consensus 67 ~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK 99 (255)
-||.+.||++|...|....+++|+.. .+|=+.
T Consensus 46 lVP~d~tV~qF~~iIRkrl~l~~~k~-flfVnn 77 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALGTSAKKV-TLAIEG 77 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcCCChhHE-EEEECC
Confidence 58999999999999999999999884 444443
No 155
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.02 E-value=1.9e+02 Score=27.62 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=51.4
Q ss_pred CcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE--ecCee-c-CC-ccchhhcCCCCCcEEEEe
Q 025281 51 PYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI--YRGKE-R-EN-GEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 51 ~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi--yKGK~-l-dD-~~~L~~~GVkdgSkImLv 121 (255)
..-+|.|.+ .|++....|+++.|+..|+.-+....|..+.=-.|+ |=-+. . +| ..+|..+|+-+.+.|.|-
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil~ 285 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLILE 285 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheecc
Confidence 445566665 669999999999999999999999998866322222 11112 1 22 568999999999988774
No 156
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=25.96 E-value=1.3e+02 Score=24.06 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=34.1
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcCCCCCcee-EEecCeec
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETGLQAGDQV-LIYRGKER 101 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QK-LiyKGK~l 101 (255)
.+|.+.|++.+|=-++|..++++.||-+..-. |+.+|+.+
T Consensus 22 nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~K 62 (94)
T COG0089 22 NKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTK 62 (94)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcce
Confidence 67999999999999999999999999887644 45777653
No 157
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=25.25 E-value=94 Score=28.21 Aligned_cols=34 Identities=3% Similarity=0.206 Sum_probs=27.6
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI 95 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi 95 (255)
..+.+.++...|..+|-+.|++..|+.|...||.
T Consensus 190 ~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 190 PEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp --EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 4788999999999999999999999999999886
No 158
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=25.10 E-value=90 Score=23.91 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=18.3
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcC
Q 025281 64 YEISVNSRATFGEVKKVLTGETG 86 (255)
Q Consensus 64 ~~I~v~~~sTvgdLK~~l~~~TG 86 (255)
.++.++.++|+.++|+.|.+...
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHH
Confidence 46889999999999998887644
No 159
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=24.29 E-value=1.7e+02 Score=22.74 Aligned_cols=44 Identities=16% Similarity=0.276 Sum_probs=36.1
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCe
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGK 99 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK 99 (255)
|+|+.-|.|++.-|.++-.-.+.||.+.+....|-+- -|.|-.+
T Consensus 1 vRiKfE~~gEKRIi~f~RPvkf~dl~~kv~~afGq~m---dl~ytn~ 44 (79)
T cd06405 1 VRIKFEHNGEKRIIQFPRPVKFKDLQQKVTTAFGQPM---DLHYTNN 44 (79)
T ss_pred CeEEEEecCceEEEecCCCccHHHHHHHHHHHhCCee---eEEEecc
Confidence 4567779999999999999999999999999999653 3556554
No 160
>COG1551 CsrA RNA-binding global regulator CsrA [Signal transduction mechanisms]
Probab=22.91 E-value=2.8e+02 Score=21.27 Aligned_cols=48 Identities=10% Similarity=0.168 Sum_probs=33.6
Q ss_pred eeeeeeCCCCC-CCCCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHh
Q 025281 37 MLVQKRSEKTD-VPAPYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGE 84 (255)
Q Consensus 37 m~vq~r~~~~~-~~~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~ 84 (255)
|||-.|..+.. .-+..|.|+|- -.+...-|-|++.-.+.=+++.|++.
T Consensus 1 MLILsRk~~Esi~IgddI~itVl~i~gnqVkiGi~APk~v~I~R~Eiy~~ 50 (73)
T COG1551 1 MLILSRKVGESIMIGDDIEITVLSIKGNQVKIGINAPKEVSIHREEIYQR 50 (73)
T ss_pred CeeEEeecCceEEecCCeEEEEEEEcCCeEEEeecCChhhhHHHHHHHHH
Confidence 78888876544 34556777776 45566778888877787777777764
No 161
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=22.77 E-value=1.1e+02 Score=25.42 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=14.9
Q ss_pred hHhHHHHHHHHHHHHcc
Q 025281 178 QITTLIEMLMRQAIKLD 194 (255)
Q Consensus 178 e~~~LsE~LM~qLLKLD 194 (255)
.+.+|-+.+|+||..|+
T Consensus 113 ~~~~le~~~~~~~~~~~ 129 (131)
T PRK06228 113 ALAKLESGFIRRFMELK 129 (131)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67889999999999886
No 162
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=22.32 E-value=3e+02 Score=19.60 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=38.5
Q ss_pred EEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 57 IAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 57 Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|.-+|+.+++ +...|+.+|-.. .++++..-.+-..|.... ....+..-|++|++|-++.
T Consensus 3 i~vNg~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~-r~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 3 ILFNDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIP-REQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred EEECCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeC-hHHcCccccCCCCEEEEEE
Confidence 3435565555 666788887765 466666666677777643 2234555689999998874
No 163
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=21.79 E-value=4.1e+02 Score=21.02 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=27.9
Q ss_pred CCcEEEEEEeC--CEEEEEEEcCCCCHHHHHHHHHHh
Q 025281 50 APYLRLRIAFG--ALRYEISVNSRATFGEVKKVLTGE 84 (255)
Q Consensus 50 ~~~I~V~Vk~g--~~~~~I~v~~~sTvgdLK~~l~~~ 84 (255)
...|.|.|.+. ...+.+.++++.|+.+|-+.+-..
T Consensus 15 ~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k 51 (108)
T smart00144 15 ANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTK 51 (108)
T ss_pred CCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHH
Confidence 35777888765 477889999999999998876655
No 164
>PF14284 PcfJ: PcfJ-like protein
Probab=21.72 E-value=42 Score=28.80 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=15.9
Q ss_pred cccccCCceeeeeeCCCCC
Q 025281 29 DCELRPGGMLVQKRSEKTD 47 (255)
Q Consensus 29 ~we~rpggm~vq~r~~~~~ 47 (255)
--|++|+|++||.|...+.
T Consensus 128 TiEv~~~~~i~Q~rg~~N~ 146 (169)
T PF14284_consen 128 TIEVRPDGRIVQARGKCNR 146 (169)
T ss_pred EEEECCCCeehhhhccccC
Confidence 4689999999999986554
No 165
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=21.30 E-value=3e+02 Score=21.37 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=36.6
Q ss_pred EEEEEEEc--CCCCHHHHHHHHHHhcCCCCCceeEEec-Ceec------CCcc---ch--hhcCCCCCcEEEEec
Q 025281 62 LRYEISVN--SRATFGEVKKVLTGETGLQAGDQVLIYR-GKER------ENGE---YL--DMCRVKDRSKVILTE 122 (255)
Q Consensus 62 ~~~~I~v~--~~sTvgdLK~~l~~~TGVpp~~QKLiyK-GK~l------dD~~---~L--~~~GVkdgSkImLv~ 122 (255)
+.|.+.++ ..+||++|=..|.+.. |+.+.+|+.. |+.+ =++. .| ..+-|++|+.|.++.
T Consensus 17 ~~~~~~~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 17 KEHHVVLDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred eEEEEeccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEEC
Confidence 45555555 5679999888887665 4555555543 3222 1222 33 246699999999885
No 166
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=21.00 E-value=3.2e+02 Score=20.78 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=44.6
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcC---CCCCceeEE-ecCeecCCccchhhcCCCCCcEEEEe
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETG---LQAGDQVLI-YRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TG---Vpp~~QKLi-yKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
+|+-..++-++++.+--+....-+.+| -|++.=-|- -.|..+|-+..+.+||+.+|-|++|-
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLs 69 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLS 69 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEE
Confidence 346667777777877777666555554 366654443 34556888889999999999999985
No 167
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=20.80 E-value=1.2e+02 Score=23.33 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=39.1
Q ss_pred EEEcCCCCHHHHHHHHHHhcCCC-------CCceeEEecCe-ec-----CC-ccchhhcCCCCCcEEEEec
Q 025281 66 ISVNSRATFGEVKKVLTGETGLQ-------AGDQVLIYRGK-ER-----EN-GEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 66 I~v~~~sTvgdLK~~l~~~TGVp-------p~~QKLiyKGK-~l-----dD-~~~L~~~GVkdgSkImLv~ 122 (255)
|+|+++.|+.+|-+.|.+.-.+. -..-.|++.+- .+ .+ +.+|.++ +.+|..|.+..
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 68999999999999999884332 23456666554 12 22 4577888 88888888754
No 168
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=20.27 E-value=2.5e+02 Score=20.78 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=28.5
Q ss_pred CEEEEEEEcCCCCHHHHHHHHHHhcCCCC--CceeEE
Q 025281 61 ALRYEISVNSRATFGEVKKVLTGETGLQA--GDQVLI 95 (255)
Q Consensus 61 ~~~~~I~v~~~sTvgdLK~~l~~~TGVpp--~~QKLi 95 (255)
+....|.|+.++|..++=..+.+..+++. +.--|+
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 45677999999999999999999999975 344443
No 169
>PF01562 Pep_M12B_propep: Reprolysin family propeptide; InterPro: IPR002870 This signature covers the region of the propeptide for members of the MEROPS peptidase family M12B (clan MA(M), adamalysin family). The propeptide contains a sequence motif similar to the "cysteine switch" of the matrixins, which mediate cell-cell or cell-matrix interactions.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis
Probab=20.13 E-value=2.4e+02 Score=22.33 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=44.1
Q ss_pred ccccCCceeeeeeCCC-CCCCCCcEEEEEEeCCEEEEEEEcCCCCH-H-HHHHHHHHhcCC-----CCCceeEEecCeec
Q 025281 30 CELRPGGMLVQKRSEK-TDVPAPYLRLRIAFGALRYEISVNSRATF-G-EVKKVLTGETGL-----QAGDQVLIYRGKER 101 (255)
Q Consensus 30 we~rpggm~vq~r~~~-~~~~~~~I~V~Vk~g~~~~~I~v~~~sTv-g-dLK~~l~~~TGV-----pp~~QKLiyKGK~l 101 (255)
+.+...|..+|+|... .......+.+.+...++.+.+++.++..+ . +++.......|. +.....-+|.|...
T Consensus 7 ~~v~~~~~~~~~r~~~~~~~~~~~~~~~~~a~g~~~~L~L~~n~~l~~~~~~v~~~~~~g~~~~~~~~~~~~c~Y~G~V~ 86 (131)
T PF01562_consen 7 ERVDRRGRFLQRRSRRRSQDHPSHLSYSFRAFGREFHLDLEPNHSLFSPGFVVEVRNEDGTREESSPSHQEHCHYQGHVE 86 (131)
T ss_pred EEECCCCccceeccccccCCCCceEEEEEEECCEEEEEEEEECCcccCCCCEEEEEcccccccccCCccccceEEEeeeC
Confidence 3555666555777633 22456789999998889999998775421 1 222222222222 22224567999876
Q ss_pred CCcc
Q 025281 102 ENGE 105 (255)
Q Consensus 102 dD~~ 105 (255)
.+..
T Consensus 87 g~~~ 90 (131)
T PF01562_consen 87 GDPG 90 (131)
T ss_pred CCCC
Confidence 6543
No 170
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=20.13 E-value=3.4e+02 Score=21.30 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=44.6
Q ss_pred EEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCce-eEE------ecCeecCCcc----chhhcCCCCCcEEEE
Q 025281 55 LRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQ-VLI------YRGKERENGE----YLDMCRVKDRSKVIL 120 (255)
Q Consensus 55 V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~Q-KLi------yKGK~ldD~~----~L~~~GVkdgSkImL 120 (255)
|+|- ..|.+-.|.|+++.|.+|+-+.|+...++.++.= -|+ +=.+.++|.+ .|..-+....+++++
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n~l~f 82 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNSVLFF 82 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCcEEEE
Confidence 4443 3468889999999999999999999999976532 221 2234456654 456666655555543
Done!