Query 025281
Match_columns 255
No_of_seqs 193 out of 310
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:12:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m62_A BAG-family molecular ch 99.8 1.7E-20 5.9E-25 144.9 9.1 74 143-222 9-84 (87)
2 1uk5_A BAG-family molecular ch 99.8 3.5E-20 1.2E-24 148.7 9.1 80 143-228 28-109 (111)
3 1m7k_A Silencer of death domai 99.8 7.6E-20 2.6E-24 144.2 8.9 75 142-222 21-97 (99)
4 3a8y_C BAG family molecular ch 99.8 7.5E-20 2.6E-24 151.9 8.9 80 143-228 32-113 (142)
5 1wgg_A Ubiquitin carboxyl-term 99.8 1.6E-19 5.5E-24 139.9 9.6 75 50-125 5-80 (96)
6 1v5t_A 8430435I17RIK protein; 99.8 1.6E-19 5.4E-24 137.7 9.1 77 49-125 4-84 (90)
7 1ugo_A BCL2-associated athanog 99.8 1.2E-19 4.2E-24 143.0 7.1 76 143-224 16-93 (99)
8 1v86_A DNA segment, CHR 7, way 99.8 3.6E-19 1.2E-23 137.4 9.2 76 49-125 14-89 (95)
9 1wxv_A BAG-family molecular ch 99.8 2.5E-18 8.6E-23 130.6 10.0 77 50-126 5-87 (92)
10 1j8c_A Ubiquitin-like protein 99.8 5.1E-18 1.8E-22 137.5 11.4 89 29-123 15-103 (125)
11 2bwf_A Ubiquitin-like protein 99.7 7.2E-18 2.5E-22 122.5 10.5 73 53-125 5-77 (77)
12 4eew_A Large proline-rich prot 99.7 5.8E-18 2E-22 127.0 9.6 73 49-122 14-87 (88)
13 2kd0_A LRR repeats and ubiquit 99.7 1E-17 3.6E-22 126.5 10.9 76 50-125 10-85 (85)
14 3phx_B Ubiquitin-like protein 99.7 2.8E-17 9.7E-22 120.8 9.8 72 51-122 3-75 (79)
15 3v6c_B Ubiquitin; structural g 99.7 3.7E-17 1.3E-21 123.9 10.1 74 49-122 14-88 (91)
16 3shq_A UBLCP1; phosphatase, hy 99.7 1.2E-17 4.1E-22 154.6 8.1 77 50-126 3-82 (320)
17 3dbh_I NEDD8; cell cycle, acti 99.7 6.4E-17 2.2E-21 120.4 10.1 74 49-122 9-83 (88)
18 2dzi_A Ubiquitin-like protein 99.7 6.6E-17 2.2E-21 118.4 10.0 74 50-123 5-79 (81)
19 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.8E-16 6.2E-21 118.2 11.1 75 49-123 4-79 (87)
20 4dwf_A HLA-B-associated transc 99.7 1.1E-16 3.8E-21 120.4 10.0 73 50-123 3-76 (90)
21 2kk8_A Uncharacterized protein 99.7 7.6E-17 2.6E-21 121.8 8.8 74 51-124 9-84 (84)
22 1wx8_A Riken cDNA 4931431F19; 99.7 7.1E-17 2.4E-21 123.3 8.6 74 50-123 15-88 (96)
23 2wyq_A HHR23A, UV excision rep 99.7 1.7E-16 6E-21 117.6 10.3 74 51-124 4-81 (85)
24 3plu_A Ubiquitin-like modifier 99.7 1.4E-16 4.8E-21 124.4 9.1 73 49-121 18-91 (93)
25 3mtn_B UBA80, ubcep1, ubiquiti 99.7 2E-16 6.9E-21 116.6 9.4 72 51-122 2-74 (85)
26 2lxa_A Ubiquitin-like protein 99.7 5E-17 1.7E-21 124.6 6.2 74 53-126 2-80 (87)
27 3m63_B Ubiquitin domain-contai 99.7 3.4E-17 1.2E-21 127.8 5.1 72 52-123 28-99 (101)
28 4a20_A Ubiquitin-like protein 99.7 1.5E-16 5.2E-21 124.4 8.7 76 48-123 15-95 (98)
29 2kan_A Uncharacterized protein 99.7 2.6E-16 8.9E-21 121.2 9.8 75 49-123 12-87 (94)
30 2dzm_A FAS-associated factor 1 99.7 1.6E-16 5.4E-21 125.0 8.7 74 49-122 6-80 (100)
31 1ndd_A NEDD8, protein (ubiquit 99.7 2.3E-16 7.9E-21 113.5 8.9 69 54-122 2-71 (76)
32 2klc_A Ubiquilin-1; ubiquitin- 99.7 2.9E-16 9.9E-21 122.2 9.9 74 51-124 24-97 (101)
33 3m62_B UV excision repair prot 99.7 1.2E-16 4.1E-21 125.4 7.7 72 52-123 1-73 (106)
34 4hcn_B Polyubiquitin, ubiquiti 99.7 1.7E-16 6E-21 122.2 8.2 73 50-122 20-93 (98)
35 1wju_A NEDD8 ultimate buster-1 99.7 1E-16 3.5E-21 126.4 7.0 74 50-123 15-91 (100)
36 4fbj_B NEDD8; effector-HOST ta 99.7 2E-16 6.8E-21 119.7 8.3 69 54-122 2-71 (88)
37 1x1m_A Ubiquitin-like protein 99.7 2.6E-16 8.8E-21 123.6 9.1 80 45-124 5-100 (107)
38 3n3k_B Ubiquitin; hydrolase, p 99.7 1.8E-16 6.1E-21 117.1 7.6 72 51-122 2-74 (85)
39 2l7r_A Ubiquitin-like protein 99.7 2.1E-16 7.3E-21 121.0 7.9 73 49-122 16-88 (93)
40 3a9j_A Ubiquitin; protein comp 99.7 4.5E-16 1.5E-20 112.0 9.0 70 54-123 2-72 (76)
41 2hj8_A Interferon-induced 17 k 99.7 3.5E-16 1.2E-20 118.2 8.8 74 51-124 3-77 (88)
42 1uh6_A Ubiquitin-like 5; beta- 99.6 3.3E-16 1.1E-20 123.5 8.5 72 50-121 26-98 (100)
43 2faz_A Ubiquitin-like containi 99.6 8.7E-16 3E-20 112.3 9.9 72 52-123 2-76 (78)
44 1wgd_A Homocysteine-responsive 99.6 4.6E-16 1.6E-20 118.5 8.4 73 50-122 5-84 (93)
45 1ttn_A DC-UBP, dendritic cell- 99.6 7.9E-16 2.7E-20 120.4 9.8 74 50-123 21-95 (106)
46 1yqb_A Ubiquilin 3; structural 99.6 7.3E-16 2.5E-20 119.9 9.5 74 50-123 20-93 (100)
47 1wy8_A NP95-like ring finger p 99.6 1.6E-15 5.5E-20 113.7 11.0 74 50-123 5-81 (89)
48 4b6w_A Tubulin-specific chaper 99.6 7.3E-16 2.5E-20 117.6 8.9 73 52-124 2-85 (86)
49 1uel_A HHR23B, UV excision rep 99.6 1.1E-15 3.9E-20 117.0 10.1 70 54-123 2-75 (95)
50 1wx7_A Ubiquilin 3; ubiquitin- 99.6 1.4E-15 4.7E-20 118.7 10.3 73 51-123 16-88 (106)
51 1v5o_A 1700011N24RIK protein; 99.6 1.3E-15 4.6E-20 118.4 10.0 73 51-123 6-84 (102)
52 3k9o_B Ubiquitin, UBB+1; E2-25 99.6 1.1E-15 3.7E-20 116.1 9.1 70 53-122 2-72 (96)
53 2daf_A FLJ35834 protein; hypot 99.6 1.2E-15 4.1E-20 123.7 9.7 74 49-122 12-87 (118)
54 1sif_A Ubiquitin; hydrophobic 99.6 1.2E-15 4.2E-20 115.3 8.4 71 53-123 10-81 (88)
55 3vdz_A Ubiquitin-40S ribosomal 99.6 1.9E-15 6.7E-20 119.4 8.9 72 51-122 34-106 (111)
56 1yx5_B Ubiquitin; proteasome, 99.6 3.2E-15 1.1E-19 114.6 9.1 70 54-123 2-72 (98)
57 2ojr_A Ubiquitin; lanthide-bin 99.6 3.8E-15 1.3E-19 117.4 9.8 73 50-122 33-106 (111)
58 2kjr_A CG11242; UBL, ubiquitin 99.6 5.2E-15 1.8E-19 114.9 10.2 75 48-122 11-94 (95)
59 1v6e_A Cytoskeleton-associated 99.6 4.1E-15 1.4E-19 114.2 9.3 73 50-122 5-86 (95)
60 2uyz_B Small ubiquitin-related 99.6 3.3E-15 1.1E-19 109.6 8.3 72 51-122 2-74 (79)
61 3u30_A Ubiquitin, linear DI-ub 99.6 4.2E-15 1.4E-19 124.4 9.8 74 49-122 17-91 (172)
62 1we6_A Splicing factor, putati 99.6 3.2E-15 1.1E-19 117.7 8.5 72 51-122 26-102 (111)
63 1we7_A SF3A1 protein; structur 99.6 5.9E-15 2E-19 117.0 10.0 63 60-122 44-106 (115)
64 4ajy_B Transcription elongatio 99.6 4E-15 1.4E-19 120.7 9.1 70 52-121 2-78 (118)
65 2fnj_B Transcription elongatio 99.6 4.3E-15 1.5E-19 120.4 9.0 71 52-122 2-79 (118)
66 2kdb_A Homocysteine-responsive 99.6 3.7E-15 1.3E-19 116.7 7.2 73 49-121 20-99 (99)
67 3b1l_X E3 ubiquitin-protein li 99.3 2.4E-16 8.3E-21 114.5 0.0 69 54-122 2-71 (76)
68 1wyw_B Ubiquitin-like protein 99.6 1.1E-14 3.8E-19 112.2 8.6 74 49-122 18-92 (97)
69 2kj6_A Tubulin folding cofacto 99.5 1.6E-14 5.6E-19 112.7 9.4 74 50-123 12-95 (97)
70 1wia_A Hypothetical ubiquitin- 99.5 2.3E-14 7.8E-19 109.3 9.9 72 49-123 4-77 (95)
71 3rt3_B Ubiquitin-like protein 99.5 2.5E-14 8.4E-19 117.7 10.1 72 51-122 80-152 (159)
72 2kdi_A Ubiquitin, vacuolar pro 99.5 1.9E-14 6.3E-19 114.5 8.4 72 52-123 9-81 (114)
73 1v2y_A 3300001G02RIK protein; 99.5 1.3E-14 4.4E-19 115.1 6.7 73 50-122 5-94 (105)
74 1t0y_A Tubulin folding cofacto 99.5 3.7E-14 1.3E-18 114.0 9.4 76 51-126 5-90 (122)
75 3rt3_B Ubiquitin-like protein 99.5 3.3E-14 1.1E-18 116.9 8.4 71 53-123 3-76 (159)
76 1wgh_A Ubiquitin-like 3, HCG-1 99.5 2.4E-14 8.3E-19 115.4 7.3 75 49-123 13-98 (116)
77 3b08_A Polyubiquitin-C, ubiqui 99.5 5.9E-14 2E-18 113.2 9.3 71 54-124 2-73 (152)
78 3l0w_B Monoubiquitinated proli 99.5 6E-14 2.1E-18 118.8 9.7 69 54-122 2-71 (169)
79 3b08_A Polyubiquitin-C, ubiqui 99.5 1.1E-13 3.8E-18 111.6 9.9 71 52-122 76-147 (152)
80 1i6z_A BAG-family molecular ch 99.5 7.1E-14 2.4E-18 115.3 8.1 109 114-226 1-118 (135)
81 3q3f_A Ribonuclease/ubiquitin 99.5 9.4E-14 3.2E-18 120.3 9.0 71 52-122 105-176 (189)
82 3u5e_m 60S ribosomal protein L 99.5 3.5E-15 1.2E-19 120.5 0.0 69 54-122 2-71 (128)
83 2gow_A HCG-1 protein, ubiquiti 99.5 1.4E-13 4.7E-18 112.2 8.7 76 49-124 14-100 (125)
84 4dbg_A Ranbp-type and C3HC4-ty 99.5 2.9E-13 1E-17 107.6 10.3 70 53-122 25-98 (105)
85 3u30_A Ubiquitin, linear DI-ub 99.5 1.9E-13 6.5E-18 114.3 9.1 70 53-122 97-167 (172)
86 3u5c_f 40S ribosomal protein S 99.4 2.6E-14 9E-19 119.8 0.0 70 54-123 2-72 (152)
87 3ai5_A Yeast enhanced green fl 99.4 9.6E-13 3.3E-17 121.6 9.9 74 49-122 230-304 (307)
88 1se9_A Ubiquitin family; ubiqu 99.4 1.2E-12 4E-17 107.1 8.3 74 51-124 15-103 (126)
89 2kzr_A Ubiquitin thioesterase 99.4 1.1E-12 3.7E-17 98.8 7.0 71 54-124 2-78 (86)
90 2dzj_A Synaptic glycoprotein S 99.4 1.4E-12 4.8E-17 99.6 7.4 70 51-120 9-85 (88)
91 1wf9_A NPL4 family protein; be 99.4 1.5E-12 5.3E-17 102.2 7.7 73 52-124 7-95 (107)
92 1oqy_A HHR23A, UV excision rep 99.3 1.4E-12 4.7E-17 123.0 7.2 71 51-121 6-80 (368)
93 1wjn_A Tubulin-folding protein 99.3 1.3E-11 4.5E-16 94.7 10.0 77 49-125 6-95 (97)
94 1t7s_A BAG-1 cochaperone; stru 99.2 2.9E-11 1E-15 99.8 8.4 107 116-226 1-123 (137)
95 1hx1_B BAG-1, BAG-family molec 99.2 5.9E-11 2E-15 95.2 9.7 91 133-226 9-108 (114)
96 2io1_B Small ubiquitin-related 99.0 6.4E-10 2.2E-14 86.0 8.6 74 49-122 4-78 (94)
97 2xzm_9 RPS31E; ribosome, trans 99.0 2.3E-11 7.9E-16 105.6 0.0 63 55-122 3-66 (189)
98 2io0_B Small ubiquitin-related 99.0 1.7E-09 5.9E-14 83.2 9.0 74 49-122 2-76 (91)
99 1wm3_A Ubiquitin-like protein 99.0 2E-09 6.8E-14 78.7 8.8 69 53-121 2-71 (72)
100 3a4r_A Nfatc2-interacting prot 99.0 3.3E-09 1.1E-13 79.2 9.8 73 50-122 5-79 (79)
101 2d07_B Ubiquitin-like protein 98.9 8E-09 2.7E-13 79.5 9.3 73 50-122 15-88 (93)
102 1wz0_A Ubiquitin-like protein 98.8 1.1E-08 3.7E-13 80.7 8.7 73 50-122 22-95 (104)
103 2eke_C Ubiquitin-like protein 98.8 1.9E-08 6.5E-13 79.8 9.0 74 49-122 28-101 (106)
104 2k8h_A Small ubiquitin protein 98.8 1.8E-08 6E-13 80.4 8.4 74 50-123 24-98 (110)
105 3kyd_D Small ubiquitin-related 98.4 1.1E-06 3.8E-11 70.7 9.2 74 49-122 37-111 (115)
106 3pge_A SUMO-modified prolifera 98.4 1.2E-06 4.1E-11 76.5 9.1 74 49-122 26-99 (200)
107 2pjh_A Protein NPL4, nuclear p 98.3 3.7E-07 1.3E-11 68.4 3.8 69 53-121 5-78 (80)
108 4efo_A Serine/threonine-protei 98.3 1.8E-06 6.1E-11 67.3 7.0 64 59-122 21-87 (94)
109 3tix_A Ubiquitin-like protein 98.2 2.5E-06 8.5E-11 74.7 8.2 74 49-122 54-127 (207)
110 2d9d_A BAG family molecular ch 97.9 4.4E-05 1.5E-09 58.3 8.4 68 146-221 11-80 (89)
111 1wj4_A KIAA0794 protein; UBX d 97.8 0.00017 5.7E-09 58.2 11.1 106 14-122 7-118 (124)
112 2jxx_A Nfatc2-interacting prot 97.7 0.00022 7.5E-09 55.5 9.9 74 49-122 22-97 (97)
113 3v7o_A Minor nucleoprotein VP3 97.7 4.3E-06 1.5E-10 74.0 0.0 74 49-122 18-91 (227)
114 3uf8_A Ubiquitin-like protein 97.6 0.00023 8E-09 61.7 8.7 74 49-122 18-91 (209)
115 2bps_A YUKD protein; ubiquitin 97.5 0.00022 7.6E-09 54.0 6.8 70 51-120 3-80 (81)
116 3ix6_A TS, tsase, thymidylate 97.4 3.1E-05 1.1E-09 73.0 0.9 85 49-133 18-102 (360)
117 3goe_A DNA repair protein RAD6 97.4 0.0011 3.8E-08 50.2 9.2 70 52-121 9-80 (82)
118 2l76_A Nfatc2-interacting prot 97.2 0.0021 7.2E-08 50.1 9.2 73 50-122 19-91 (95)
119 4da1_A Protein phosphatase 1K, 97.2 5.9E-05 2E-09 70.3 0.0 73 50-122 28-100 (389)
120 2kc2_A Talin-1, F1; FERM, adhe 97.1 0.00086 3E-08 54.7 6.1 68 54-121 13-120 (128)
121 2al3_A TUG long isoform; TUG U 96.9 0.0025 8.6E-08 49.2 7.2 70 54-123 11-81 (90)
122 3qx1_A FAS-associated factor 1 96.8 0.0058 2E-07 45.3 8.4 72 50-122 5-82 (84)
123 1oey_A P67-PHOX, neutrophil cy 96.0 0.015 5E-07 44.2 6.3 49 50-99 3-51 (83)
124 2dzk_A UBX domain-containing p 95.5 0.099 3.4E-06 40.7 9.4 73 50-122 11-89 (109)
125 1vd2_A Protein kinase C, IOTA 94.7 0.14 4.8E-06 39.1 7.9 50 49-98 3-53 (89)
126 4a3p_A Ubiquitin carboxyl-term 94.2 0.33 1.1E-05 41.9 10.3 68 54-121 129-206 (217)
127 3jyu_A Ubiquitin carboxyl-term 94.1 0.35 1.2E-05 42.1 10.3 68 54-121 141-218 (231)
128 3ivf_A Talin-1; FERM domain, c 94.1 0.27 9.2E-06 45.0 9.9 70 52-121 3-82 (371)
129 2cr5_A Reproduction 8; UBX dom 93.6 0.46 1.6E-05 36.8 9.0 72 50-122 21-97 (109)
130 1ip9_A BEM1 protein; ubiquitin 93.1 0.24 8.1E-06 37.8 6.3 68 51-121 11-83 (85)
131 1s3s_G P47 protein; AAA ATPase 93.0 0.21 7.3E-06 39.9 6.4 69 50-118 50-123 (127)
132 4eut_A Serine/threonine-protei 91.3 0.68 2.3E-05 41.7 8.4 69 54-122 314-385 (396)
133 1ryj_A Unknown; beta/alpha pro 91.2 2.4 8.2E-05 30.0 9.6 61 53-122 5-65 (70)
134 1q1o_A Cell division control p 91.1 0.42 1.4E-05 37.2 5.8 48 51-98 4-64 (98)
135 2kvr_A Ubiquitin carboxyl-term 87.0 0.51 1.7E-05 38.0 3.7 32 65-96 59-90 (130)
136 2daj_A KIAA0977 protein, COBL- 86.4 3.6 0.00012 31.5 7.9 72 48-122 6-81 (91)
137 2l32_A Small archaeal modifier 85.6 1.9 6.5E-05 31.2 5.9 59 54-122 2-61 (74)
138 1vjk_A Molybdopterin convertin 83.4 10 0.00035 28.1 9.3 66 52-122 9-93 (98)
139 1wj6_A KIAA0049 protein, RSGI 80.6 9.6 0.00033 29.7 8.4 40 49-88 11-52 (101)
140 1tyg_B YJBS; alpha beta barrel 79.4 6.3 0.00022 29.5 6.8 62 54-122 20-82 (87)
141 3po0_A Small archaeal modifier 78.1 17 0.00057 26.2 8.8 58 60-122 16-84 (89)
142 2bkf_A Zinc-finger protein NBR 77.6 7.6 0.00026 29.5 6.8 47 50-98 4-52 (87)
143 1ef1_A Moesin; membrane, FERM 73.7 17 0.00058 31.5 9.1 69 52-120 1-75 (294)
144 3qa8_A MGC80376 protein; kinas 73.5 2.3 8E-05 42.6 3.9 52 59-110 319-371 (676)
145 4e71_A Plexin-B2, MM1; transme 72.1 23 0.0008 27.9 8.6 73 50-122 9-109 (111)
146 2eel_A Cell death activator CI 70.6 18 0.0006 27.6 7.3 57 61-122 20-78 (91)
147 2r2o_A Plexin-B1; effector dom 69.9 25 0.00086 28.7 8.6 73 50-122 22-127 (138)
148 2ylm_A Ubiquitin carboxyl-term 69.1 3.6 0.00012 40.0 4.0 31 65-95 39-69 (530)
149 3onh_A Ubiquitin-activating en 68.8 11 0.00037 30.5 6.1 59 64-123 8-79 (127)
150 1wgk_A Riken cDNA 2900073H19 p 68.6 8.3 0.00028 30.1 5.3 70 51-122 10-103 (114)
151 3ivf_A Talin-1; FERM domain, c 64.4 37 0.0013 30.6 9.6 71 51-121 84-165 (371)
152 1wmh_B Partitioning defective- 63.9 28 0.00094 26.3 7.2 49 50-98 4-54 (86)
153 2cu3_A Unknown function protei 63.2 19 0.00064 24.6 5.8 57 58-122 3-59 (64)
154 2qjl_A URM1, ubiquitin-related 62.0 39 0.0013 24.9 7.8 61 60-122 18-94 (99)
155 1y8x_B Ubiquitin-activating en 61.6 9.4 0.00032 29.3 4.3 61 62-122 5-83 (98)
156 1h4r_A Merlin; FERM, neurofibr 61.5 39 0.0013 29.6 9.0 69 50-118 20-93 (314)
157 3onj_A T-snare VTI1; helix, HA 60.0 16 0.00055 27.6 5.3 43 176-223 7-49 (97)
158 1wgy_A RAP guanine nucleotide 59.1 20 0.00069 27.9 5.8 74 49-122 6-85 (104)
159 1f0z_A THis protein; ubiquitin 58.9 21 0.00071 24.5 5.4 59 57-122 3-61 (66)
160 3rpf_C Molybdopterin convertin 58.2 31 0.0011 24.0 6.3 52 66-122 16-69 (74)
161 1vcs_A Vesicle transport throu 57.4 17 0.00057 27.7 5.0 41 176-221 11-51 (102)
162 2i1j_A Moesin; FERM, coiled-co 56.2 36 0.0012 33.3 8.5 70 51-120 3-78 (575)
163 2k5p_A THis protein, thiamine- 54.6 15 0.00052 26.6 4.2 61 57-122 3-64 (78)
164 2cu1_A Mitogen-activated prote 54.5 27 0.00093 27.3 5.8 47 51-100 7-53 (103)
165 2kl0_A Putative thiamin biosyn 54.3 29 0.00098 24.7 5.6 58 57-122 3-60 (73)
166 1fm0_D Molybdopterin convertin 53.7 27 0.00094 24.3 5.4 55 62-122 17-76 (81)
167 4e74_A Plexin-A4; RBD, structu 52.8 70 0.0024 25.3 8.1 73 50-122 11-113 (117)
168 1pqs_A Cell division control p 52.5 12 0.00042 27.4 3.4 37 62-98 2-43 (77)
169 3kuz_A Plexin-C1; structural g 51.3 55 0.0019 26.3 7.3 73 50-122 17-125 (126)
170 1rws_A Hypothetical protein PF 48.7 7.4 0.00025 27.8 1.7 49 65-122 24-72 (77)
171 2hj1_A Hypothetical protein; s 47.0 73 0.0025 24.1 7.2 68 50-122 10-84 (97)
172 3h6n_A Plexin-D1; structural g 46.7 1.1E+02 0.0038 24.5 8.8 71 52-122 4-103 (127)
173 2q5w_D Molybdopterin convertin 45.0 33 0.0011 23.7 4.7 57 60-122 14-72 (77)
174 1wgr_A Growth factor receptor- 44.5 56 0.0019 25.1 6.2 75 50-124 7-93 (100)
175 2qyw_A Vesicle transport throu 44.0 49 0.0017 25.1 5.8 17 205-221 46-62 (102)
176 2juo_A GA-binding protein alph 41.4 99 0.0034 23.4 6.9 58 64-121 5-62 (89)
177 3r8s_T 50S ribosomal protein L 41.1 1.1E+02 0.0039 23.0 7.4 57 62-121 28-85 (93)
178 1f2r_I Inhibitor of caspase-ac 40.2 1.3E+02 0.0043 23.2 8.9 64 54-122 20-89 (100)
179 1ibx_B Chimera of IGG binding 39.6 25 0.00086 29.0 3.7 49 72-122 82-134 (145)
180 3qij_A Protein 4.1; cytoskelet 36.7 35 0.0012 30.1 4.5 73 49-121 14-93 (296)
181 2c7h_A RBBP6, retinoblastoma-b 36.6 62 0.0021 24.3 5.2 49 49-97 5-55 (86)
182 2dhz_A RAP guanine nucleotide 35.8 87 0.003 24.9 6.2 73 50-122 7-91 (120)
183 3hm6_X Plexin-B1; structural g 35.4 1.1E+02 0.0038 30.8 8.1 73 50-122 255-360 (644)
184 2g1e_A Hypothetical protein TA 35.3 1.1E+02 0.0039 21.3 6.8 57 65-122 18-85 (90)
185 2l52_A Methanosarcina acetivor 34.3 1.4E+02 0.0047 22.0 8.4 67 52-122 3-94 (99)
186 4e61_A Protein BIM1; EB1-like 32.2 74 0.0025 24.8 5.1 40 180-219 48-98 (106)
187 2ylm_A Ubiquitin carboxyl-term 31.0 58 0.002 31.5 5.3 70 51-120 129-214 (530)
188 2jrh_A Mitogen-activated prote 30.1 1.4E+02 0.0046 22.9 6.1 47 51-100 3-49 (94)
189 3ig3_A Plxna3 protein; plexin 28.6 2.4E+02 0.0083 28.2 9.3 73 50-122 231-333 (627)
190 2v1y_A Phosphatidylinositol-4, 28.4 96 0.0033 24.1 5.2 36 51-86 18-54 (108)
191 4dxa_B KREV interaction trappe 27.8 44 0.0015 29.6 3.6 38 49-90 2-42 (322)
192 2npt_B Mitogen-activated prote 27.1 1.5E+02 0.0051 22.9 5.9 46 51-99 19-64 (100)
193 2k9x_A Tburm1, uncharacterized 25.3 27 0.00092 27.0 1.5 59 62-122 21-97 (110)
194 3au4_A Myosin-X; protein-prote 25.2 1E+02 0.0035 29.4 5.9 47 51-97 215-264 (555)
195 2c60_A Human mitogen-activated 24.5 1.9E+02 0.0065 22.6 6.2 47 51-100 30-76 (111)
196 3tve_T 50S ribosomal protein L 24.2 1.2E+02 0.0041 22.8 4.9 57 62-121 22-79 (92)
197 3dwg_C 9.5 kDa culture filtrat 21.8 2.2E+02 0.0075 20.2 7.3 56 65-122 20-88 (93)
198 2bt6_A Adrenodoxin 1; rutheniu 21.0 95 0.0033 22.9 3.8 29 49-77 3-32 (108)
199 2ktr_A Sequestosome-1; autopha 20.6 2.4E+02 0.0081 22.2 6.2 49 50-98 18-84 (117)
No 1
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=99.83 E-value=1.7e-20 Score=144.86 Aligned_cols=74 Identities=24% Similarity=0.289 Sum_probs=70.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhhhccCCCCcchhhHhHHHHHHHHHHHHccCccccch--hhHHHHHHHHHHHHHHHHH
Q 025281 143 AHRAISNVSMEVDKLVEQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISAEGD--ASAQKKLQGKRVQKCVETL 220 (255)
Q Consensus 143 a~~ais~v~~eVdkLa~~v~a~e~~v~~g~kv~e~e~~~LsE~LM~qLLKLD~I~aeGd--~R~qRK~~VkrVQ~~le~L 220 (255)
++++|++|+.+|++|+++|.+|+ +++.|++|..|+|+||++|||||+|+++|+ +|.+||.+|++||++|+.|
T Consensus 9 a~~~I~~I~~ev~~L~~~V~~f~------g~~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~Vk~iQ~~l~~L 82 (87)
T 1m62_A 9 SIKKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEKL 82 (87)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCC------CCTTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------CCcchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999995 358999999999999999999999999995 9999999999999999999
Q ss_pred hH
Q 025281 221 DL 222 (255)
Q Consensus 221 D~ 222 (255)
|.
T Consensus 83 D~ 84 (87)
T 1m62_A 83 EK 84 (87)
T ss_dssp HH
T ss_pred Hh
Confidence 97
No 2
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=99.81 E-value=3.5e-20 Score=148.73 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=72.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhhhccCCCCcchhhHhHHHHHHHHHHHHccCccccch--hhHHHHHHHHHHHHHHHHH
Q 025281 143 AHRAISNVSMEVDKLVEQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISAEGD--ASAQKKLQGKRVQKCVETL 220 (255)
Q Consensus 143 a~~ais~v~~eVdkLa~~v~a~e~~v~~g~kv~e~e~~~LsE~LM~qLLKLD~I~aeGd--~R~qRK~~VkrVQ~~le~L 220 (255)
++++|+.|..+|++|+++|.+| ++++.|++|.+|+|+||++|||||+|+++|+ +|.+||.+||+||++|+.|
T Consensus 28 ~~~~I~~I~~eV~~L~~qV~~f------~g~k~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~aVk~iQ~~l~~L 101 (111)
T 1uk5_A 28 GVLKVEAILEKVQGLEQAVDSF------EGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEKL 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC------CSCSSSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------cCCcchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999 3455999999999999999999999999995 9999999999999999999
Q ss_pred hHhhhhcc
Q 025281 221 DLLKIANV 228 (255)
Q Consensus 221 D~~k~~n~ 228 (255)
|....-++
T Consensus 102 D~k~~~~~ 109 (111)
T 1uk5_A 102 EQKASGPS 109 (111)
T ss_dssp HHHHHCCC
T ss_pred HhcccCCC
Confidence 98665443
No 3
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=99.80 E-value=7.6e-20 Score=144.19 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=70.3
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHhhhccCCCCcchhhHhHHHHHHHHHHHHccCccccch--hhHHHHHHHHHHHHHHHH
Q 025281 142 SAHRAISNVSMEVDKLVEQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISAEGD--ASAQKKLQGKRVQKCVET 219 (255)
Q Consensus 142 ka~~ais~v~~eVdkLa~~v~a~e~~v~~g~kv~e~e~~~LsE~LM~qLLKLD~I~aeGd--~R~qRK~~VkrVQ~~le~ 219 (255)
.++++|+.|..+|++|+++|.+|+ |. +.|++|..|+|+||++|||||+|+++|+ +|.+||.+|++||++|+.
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~-----G~-k~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~Vk~iQ~~l~~ 94 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFV-----GK-KTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEK 94 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCC-----SC-TTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh-----CC-chHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999995 44 4899999999999999999999999995 999999999999999999
Q ss_pred HhH
Q 025281 220 LDL 222 (255)
Q Consensus 220 LD~ 222 (255)
||.
T Consensus 95 LD~ 97 (99)
T 1m7k_A 95 LEK 97 (99)
T ss_dssp HHH
T ss_pred Hhc
Confidence 997
No 4
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=99.80 E-value=7.5e-20 Score=151.94 Aligned_cols=80 Identities=23% Similarity=0.293 Sum_probs=73.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhhhccCCCCcchhhHhHHHHHHHHHHHHccCccccch--hhHHHHHHHHHHHHHHHHH
Q 025281 143 AHRAISNVSMEVDKLVEQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISAEGD--ASAQKKLQGKRVQKCVETL 220 (255)
Q Consensus 143 a~~ais~v~~eVdkLa~~v~a~e~~v~~g~kv~e~e~~~LsE~LM~qLLKLD~I~aeGd--~R~qRK~~VkrVQ~~le~L 220 (255)
++++|.+|..||++|+++|.+| .+++.|++|..|+|+||++|||||+|+++|+ +|.+||.+||+||++|+.|
T Consensus 32 ~~~aI~~V~~eVd~L~~eV~~F------~G~~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~aVk~VQ~~Le~L 105 (142)
T 3a8y_C 32 SHKAVWNVLGNLSEIQGEVLSF------DGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSYL 105 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC------CSCTTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHh------cCCchHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999 4458999999999999999999999999995 9999999999999999999
Q ss_pred hHhhhhcc
Q 025281 221 DLLKIANV 228 (255)
Q Consensus 221 D~~k~~n~ 228 (255)
|..+.-+.
T Consensus 106 D~k~~e~~ 113 (142)
T 3a8y_C 106 DLKSDEWE 113 (142)
T ss_dssp HHHHCBCC
T ss_pred HHhhHHHH
Confidence 99776543
No 5
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=1.6e-19 Score=139.85 Aligned_cols=75 Identities=15% Similarity=0.242 Sum_probs=71.7
Q ss_pred CCcEEEEEEeCCEEE-EEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecCCc
Q 025281 50 APYLRLRIAFGALRY-EISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPA 125 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~-~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p~ 125 (255)
..+|.|+|+|++++| .|+|++++||++||++|++.+||||++|||||+|+.++|+ +|+.|||++|++|||+++++
T Consensus 5 ~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 468999999999999 6999999999999999999999999999999999999999 99999999999999999765
No 6
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.80 E-value=1.6e-19 Score=137.74 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=73.2
Q ss_pred CCCcEEEEEEeCCEEEEE-EEcCCCCHHHHHHHHHHhcCCCCCceeEE---ecCeecCCccchhhcCCCCCcEEEEecCC
Q 025281 49 PAPYLRLRIAFGALRYEI-SVNSRATFGEVKKVLTGETGLQAGDQVLI---YRGKERENGEYLDMCRVKDRSKVILTEDP 124 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I-~v~~~sTvgdLK~~l~~~TGVpp~~QKLi---yKGK~ldD~~~L~~~GVkdgSkImLv~~p 124 (255)
..++|.|+|+|++++|.| ++++++||++||++|++.+||||++|||+ |+|+.++|+.+|+.|||++|++|||++++
T Consensus 4 ~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred CCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 346799999999999999 99999999999999999999999999999 99999999999999999999999999987
Q ss_pred c
Q 025281 125 A 125 (255)
Q Consensus 125 ~ 125 (255)
+
T Consensus 84 ~ 84 (90)
T 1v5t_A 84 E 84 (90)
T ss_dssp S
T ss_pred c
Confidence 6
No 7
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=99.79 E-value=1.2e-19 Score=143.00 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=69.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhhhccCCCCcchhhHhHHHHHHHHHHHHccCccccch--hhHHHHHHHHHHHHHHHHH
Q 025281 143 AHRAISNVSMEVDKLVEQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISAEGD--ASAQKKLQGKRVQKCVETL 220 (255)
Q Consensus 143 a~~ais~v~~eVdkLa~~v~a~e~~v~~g~kv~e~e~~~LsE~LM~qLLKLD~I~aeGd--~R~qRK~~VkrVQ~~le~L 220 (255)
+.++|+.|..+|++|+++|.+| .| ++.|++|..|.|+||++|||||+|+++|+ +|.+||++|++||++|+.|
T Consensus 16 pi~kI~~I~~ev~~L~~~V~~f-----~g-~k~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~~Vk~iQ~~l~~L 89 (99)
T 1ugo_A 16 SISRLQEIQREVKAIEPQVVGF-----SG-LSDDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKEL 89 (99)
T ss_dssp THHHHHHHHHHHHHSHHHHHTC-----CC-CTTSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-----cC-CchhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999 34 44899999999999999999999999994 5999999999999999999
Q ss_pred hHhh
Q 025281 221 DLLK 224 (255)
Q Consensus 221 D~~k 224 (255)
|..-
T Consensus 90 D~k~ 93 (99)
T 1ugo_A 90 EQNA 93 (99)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9843
No 8
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=3.6e-19 Score=137.36 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=70.8
Q ss_pred CCCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecCCc
Q 025281 49 PAPYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPA 125 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p~ 125 (255)
+..+|+|+|+|++++|.|+|++++||.+||++|++.|||||++|||+|+|+.++|. +|..|||++|++|||++.++
T Consensus 14 ~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd~-tL~~~~i~~g~~i~lv~~~~ 89 (95)
T 1v86_A 14 GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDK-TLREIKVTSGAKIMVVGSTI 89 (95)
T ss_dssp CCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSSS-BHHHHCCCTTEEEEECCSSC
T ss_pred CCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCcC-cHHHCCCCCCCEEEEEeccc
Confidence 34679999999999999999999999999999999999999999999999999655 99999999999999998654
No 9
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.5e-18 Score=130.62 Aligned_cols=77 Identities=19% Similarity=0.319 Sum_probs=71.2
Q ss_pred CCcEEEEEEeCCEEEEEEEcCC-----CCHHHHHHHHHHhcCCCCCceeEEecCeecCC-ccchhhcCCCCCcEEEEecC
Q 025281 50 APYLRLRIAFGALRYEISVNSR-----ATFGEVKKVLTGETGLQAGDQVLIYRGKEREN-GEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~~I~v~~~-----sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD-~~~L~~~GVkdgSkImLv~~ 123 (255)
..+|+|+|++++.+|.|+|+++ .||++||++|++.+|+||++|||+|+|+.++| +.+|..|||++|++|||++.
T Consensus 5 ~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 5 SSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp CSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 4689999999999999999996 99999999999999999999999999999887 56899999999999999986
Q ss_pred Cch
Q 025281 124 PAS 126 (255)
Q Consensus 124 p~s 126 (255)
+.+
T Consensus 85 ~~~ 87 (92)
T 1wxv_A 85 KNS 87 (92)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 10
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=5.1e-18 Score=137.53 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=81.5
Q ss_pred cccccCCceeeeeeCCCCCCCCCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchh
Q 025281 29 DCELRPGGMLVQKRSEKTDVPAPYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLD 108 (255)
Q Consensus 29 ~we~rpggm~vq~r~~~~~~~~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~ 108 (255)
+||.+|.|+.+.+-+ ..+|.|.|++.+..+.|+|+++.||.+||.+|++.+|||+++|||||+|+.|+|+.+|.
T Consensus 15 ~~~~~~~~s~~~~~~------~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~ 88 (125)
T 1j8c_A 15 RGPAAAQGSAAAPAE------PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLI 88 (125)
T ss_dssp CCSCCCCCSSSCCCC------CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGG
T ss_pred hCCcCCCCCCcccCC------CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHH
Confidence 599999999876632 35789999976789999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEEecC
Q 025281 109 MCRVKDRSKVILTED 123 (255)
Q Consensus 109 ~~GVkdgSkImLv~~ 123 (255)
+|||++|++|+|+..
T Consensus 89 dygI~~gstI~lv~~ 103 (125)
T 1j8c_A 89 QHGIHDGLTVHLVIK 103 (125)
T ss_dssp GTTCSSSEEEEEEEC
T ss_pred HcCCCCCCEEEEEec
Confidence 999999999999974
No 11
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.75 E-value=7.2e-18 Score=122.49 Aligned_cols=73 Identities=23% Similarity=0.423 Sum_probs=69.4
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecCCc
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPA 125 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p~ 125 (255)
+.|.|++++..+.++++++.||++||..|++.+|+|++.|||+|+|+.++|+.+|.+|||++|++|+|+..|+
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 77 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQP 77 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcCC
Confidence 7888888889999999999999999999999999999999999999999999999999999999999998653
No 12
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.74 E-value=5.8e-18 Score=127.02 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=67.9
Q ss_pred CCCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.++++.|.|++ ++.++.++++++.||++||++|++.+|+||++|||+|+|+.++|+.+|.+||| +|++|+|+-
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 34679999997 57899999999999999999999999999999999999999999999999999 899999973
No 13
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=1e-17 Score=126.54 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=72.1
Q ss_pred CCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecCCc
Q 025281 50 APYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPA 125 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p~ 125 (255)
-.++.+.++++++.+.+++++++||++||++|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+.+|+
T Consensus 10 ~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~~ 85 (85)
T 2kd0_A 10 HSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQG 85 (85)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCCC
T ss_pred CCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 4678889999999999999999999999999999999999999999999999999999999999999999998763
No 14
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=120.76 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=67.8
Q ss_pred CcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 51 PYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 51 ~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+.+.|.|++ +|+++.++++++.||++||+.|++.+|+||+.|||+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 567888886 678999999999999999999999999999999999999999999999999999999999974
No 15
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.71 E-value=3.7e-17 Score=123.94 Aligned_cols=74 Identities=22% Similarity=0.376 Sum_probs=69.6
Q ss_pred CCCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+...+.|.|+ .+|.++.|+|+++.||++||.+|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 88 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEEC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEE
Confidence 4567899999 5779999999999999999999999999999999999999999999999999999999999984
No 16
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.71 E-value=1.2e-17 Score=154.62 Aligned_cols=77 Identities=13% Similarity=0.282 Sum_probs=71.3
Q ss_pred CCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE---ecCeecCCccchhhcCCCCCcEEEEecCCch
Q 025281 50 APYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI---YRGKERENGEYLDMCRVKDRSKVILTEDPAS 126 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi---yKGK~ldD~~~L~~~GVkdgSkImLv~~p~s 126 (255)
.++|+|+|||+|++|+|++++++||++||++|++.|||||++|||| |+|+.++|+.+|+.|||++|++|||||++++
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 5789999999999999999999999999999999999999999999 8999999999999999999999999998875
No 17
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.70 E-value=6.4e-17 Score=120.44 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=69.3
Q ss_pred CCCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+..++.|.|+. ++.++.|+|++++||.+||.+|++.+|+||+.|||+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 83 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 83 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECC
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 35678999994 779999999999999999999999999999999999999999999999999999999999974
No 18
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.6e-17 Score=118.45 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=68.7
Q ss_pred CCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 50 APYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 50 ~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
..++.|.|+ .++..+.++++++.||++||+.|++.+|+|++.|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 467888888 45788999999999999999999999999999999999999999999999999999999999864
No 19
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.8e-16 Score=118.17 Aligned_cols=75 Identities=16% Similarity=0.260 Sum_probs=70.1
Q ss_pred CCCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 49 PAPYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 49 ~~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
+++++.|.|+. .+.++.++|+++.||.+||++|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEe
Confidence 45789999996 5789999999999999999999999999999999999999999999999999999999999853
No 20
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.69 E-value=1.1e-16 Score=120.44 Aligned_cols=73 Identities=18% Similarity=0.258 Sum_probs=68.8
Q ss_pred CCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 50 APYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 50 ~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
++++.|.|++ ++.++.|+|+++.||.+||.+|++.+|+|+++|||+|+|+.|+|+.+|.+||| +|++|+|+-.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~ 76 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 76 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEec
Confidence 4688999997 57899999999999999999999999999999999999999999999999999 9999999964
No 21
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=7.6e-17 Score=121.83 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=68.0
Q ss_pred CcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCee-cCCccchhhcCCCCCcEEEEecCC
Q 025281 51 PYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKE-RENGEYLDMCRVKDRSKVILTEDP 124 (255)
Q Consensus 51 ~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~-ldD~~~L~~~GVkdgSkImLv~~p 124 (255)
.-++|.|+ ..|+.+.++|+++.||++||++|++.+|+||++|||+|+|+. ++|+.+|.+|||++|++|+|+..|
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 34677777 457899999999999999999999999999999999999999 999999999999999999998765
No 22
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=7.1e-17 Score=123.26 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=70.0
Q ss_pred CCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 50 APYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
..+|.|.|++.+..|.++|+++.||.+||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR 88 (96)
T ss_dssp SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEe
Confidence 46799999987789999999999999999999999999999999999999999999999999999999999864
No 23
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.68 E-value=1.7e-16 Score=117.58 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=68.3
Q ss_pred CcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHh---cCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecCC
Q 025281 51 PYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGE---TGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDP 124 (255)
Q Consensus 51 ~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~---TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p 124 (255)
.++.|.|++ ++..+.++|+++.||++||+.|++. +|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+..+
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 568888987 4788999999999999999999997 9999999999999999999999999999999999999753
No 24
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.67 E-value=1.4e-16 Score=124.36 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=68.3
Q ss_pred CCCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 49 PAPYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 49 ~~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
.+++|.|.|+ ..|+++.|.++|+.||++||++|++.+|+||+.|||+|.|+.++|..+|.+|||++|++|+|.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 4689999999 468999999999999999999999999999999999999999999999999999999999984
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2e-16 Score=116.57 Aligned_cols=72 Identities=21% Similarity=0.334 Sum_probs=67.3
Q ss_pred CcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 51 PYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 51 ~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+++.|.|++ .+.++.+++++++||.+||++|++.+|+||++|||+|+|+.++|+.+|.+|||+++++|+|+-
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 568888885 568999999999999999999999999999999999999999999999999999999999985
No 26
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=5e-17 Score=124.56 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=66.1
Q ss_pred EEEEEEe-CCEEEEEEE--cCCCCHHHHHHHH-HHhcCCCCCceeEEecCeecCCccchhhcCC-CCCcEEEEecCCch
Q 025281 53 LRLRIAF-GALRYEISV--NSRATFGEVKKVL-TGETGLQAGDQVLIYRGKERENGEYLDMCRV-KDRSKVILTEDPAS 126 (255)
Q Consensus 53 I~V~Vk~-g~~~~~I~v--~~~sTvgdLK~~l-~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GV-kdgSkImLv~~p~s 126 (255)
+.|.||. .+.++.|++ +++.||++||+.| ++.+|+||++|||||+||.|+|+.+|++||| ++|++|+|+++|+-
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~~ 80 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNL 80 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCCc
Confidence 5677775 456677765 4999999999999 9999999999999999999999999999999 69999999998874
No 27
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.4e-17 Score=127.80 Aligned_cols=72 Identities=24% Similarity=0.420 Sum_probs=68.5
Q ss_pred cEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 52 YLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 52 ~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
.|+|+|++++..+.|+|+++.||++||++|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 28 ~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 28 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp -CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 588999989999999999999999999999999999999999999999999999999999999999999964
No 28
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.67 E-value=1.5e-16 Score=124.44 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=66.5
Q ss_pred CCCCcEEEEEEe-CCEEEEE--EEcCCCCHHHHHHHH-HHhcCCCCCceeEEecCeecCCccchhhcCC-CCCcEEEEec
Q 025281 48 VPAPYLRLRIAF-GALRYEI--SVNSRATFGEVKKVL-TGETGLQAGDQVLIYRGKERENGEYLDMCRV-KDRSKVILTE 122 (255)
Q Consensus 48 ~~~~~I~V~Vk~-g~~~~~I--~v~~~sTvgdLK~~l-~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GV-kdgSkImLv~ 122 (255)
...++|.|+||. +|.+|++ +++++.||++||++| ++.+|+||++|||||+|+.|+|+.+|++||| ++|++|+|+.
T Consensus 15 ~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 15 MDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp ---CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 456789999996 4566665 667999999999999 9999999999999999999999999999999 9999999997
Q ss_pred C
Q 025281 123 D 123 (255)
Q Consensus 123 ~ 123 (255)
+
T Consensus 95 s 95 (98)
T 4a20_A 95 K 95 (98)
T ss_dssp C
T ss_pred e
Confidence 5
No 29
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=2.6e-16 Score=121.19 Aligned_cols=75 Identities=13% Similarity=0.233 Sum_probs=69.6
Q ss_pred CCCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCc-cchhhcCCCCCcEEEEecC
Q 025281 49 PAPYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENG-EYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~-~~L~~~GVkdgSkImLv~~ 123 (255)
....|.|.|++.+.++.|+|+++.||++||++|++.+|+||++|||+|+|+.|+|+ .+|.+|||++|++|+|+..
T Consensus 12 ~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r 87 (94)
T 2kan_A 12 AVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLK 87 (94)
T ss_dssp SSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred CCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEe
Confidence 45678999997655899999999999999999999999999999999999999998 9999999999999999864
No 30
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=125.02 Aligned_cols=74 Identities=15% Similarity=0.303 Sum_probs=67.8
Q ss_pred CCCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEe-cCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIY-RGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiy-KGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+.+++.|+|+|++++|+|+|++++|+++||++|+++|||||++|||+| +|+.++|+.+|+.|||++|++|||+=
T Consensus 6 ~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl 80 (100)
T 2dzm_A 6 SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLT 80 (100)
T ss_dssp CCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECC
T ss_pred CcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEe
Confidence 446789999999999999999999999999999999999999999996 54448999999999999999999974
No 31
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.67 E-value=2.3e-16 Score=113.53 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=64.7
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.|.|++ ++.++.+++++++||++||..|++.+|+||+.|||+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 577775 568899999999999999999999999999999999999999999999999999999999984
No 32
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=122.25 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=69.3
Q ss_pred CcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecCC
Q 025281 51 PYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDP 124 (255)
Q Consensus 51 ~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p 124 (255)
.++.|.|+..+..+.++|+++.||++||++|++.+|+||+.|||+|+|+.++|+.+|.+|||++|++|+|+..+
T Consensus 24 ~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 24 KIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKT 97 (101)
T ss_dssp CCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECC
T ss_pred CeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 46888888767889999999999999999999999999999999999999999999999999999999999754
No 33
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.2e-16 Score=125.42 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=66.7
Q ss_pred cEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 52 YLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 52 ~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
++.|.|++ +|..+.|+|+++.||++||.+|++.+|+|+++|||||+|+.|+|+.+|.+|||++|++|+|+..
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~ 73 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVS 73 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECC
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEc
Confidence 36788885 6789999999999999999999999999999999999999999999999999999999999974
No 34
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.7e-16 Score=122.24 Aligned_cols=73 Identities=22% Similarity=0.356 Sum_probs=67.3
Q ss_pred CCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 50 APYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
...+.|.|+ .+++.|.|+|+++.||.+||++|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 456788888 4678999999999999999999999999999999999999999999999999999999999984
No 35
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1e-16 Score=126.44 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=67.1
Q ss_pred CCcEEEEEEe---CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 50 APYLRLRIAF---GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 50 ~~~I~V~Vk~---g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
..+|.|++.. ++++++|+|+++.||++||+.|++.+|+||+.|||||.||.++|+.+|++|||++|++||+|.-
T Consensus 15 ~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~l 91 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLEL 91 (100)
T ss_dssp EEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred eEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 3467777665 1578999999999999999999999999999999999999999999999999999999999864
No 36
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.66 E-value=2e-16 Score=119.72 Aligned_cols=69 Identities=17% Similarity=0.294 Sum_probs=64.8
Q ss_pred EEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.|.|+ .+|+++.|++++++||++||.+|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~ 71 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 56777 4678999999999999999999999999999999999999999999999999999999999984
No 37
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=2.6e-16 Score=123.57 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=70.7
Q ss_pred CCCCCCCcEEEEEEeCCE----EEEEEEcC---------CCCHHHHHHHHHHhc--CCCCCc-eeEEecCeecCCccchh
Q 025281 45 KTDVPAPYLRLRIAFGAL----RYEISVNS---------RATFGEVKKVLTGET--GLQAGD-QVLIYRGKERENGEYLD 108 (255)
Q Consensus 45 ~~~~~~~~I~V~Vk~g~~----~~~I~v~~---------~sTvgdLK~~l~~~T--GVpp~~-QKLiyKGK~ldD~~~L~ 108 (255)
..+++...|.|+|++.+. +|.|+|++ +.||++||++|++.+ |+|+++ |||||+|+.|+|+.+|.
T Consensus 5 ~~~~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~ 84 (107)
T 1x1m_A 5 SSGMSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLD 84 (107)
T ss_dssp SCCCCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHH
T ss_pred CCCccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHH
Confidence 334566778999997655 89999766 599999999999999 999999 99999999999999999
Q ss_pred hcCCCCCcEEEEecCC
Q 025281 109 MCRVKDRSKVILTEDP 124 (255)
Q Consensus 109 ~~GVkdgSkImLv~~p 124 (255)
.|||++|++|+|+..+
T Consensus 85 ~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 85 FYGIQPGSTVHVLRKS 100 (107)
T ss_dssp HHTCCTTCEEEEEESS
T ss_pred HcCCCCCCEEEEEeCC
Confidence 9999999999999743
No 38
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.8e-16 Score=117.08 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=66.1
Q ss_pred CcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 51 PYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 51 ~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+++.|.|+. .+.++.+++++++||.+||++|++.+|+||++|||+|+|+.++|+.+|.+|||+++++|+|+-
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 74 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLL 74 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 467888884 568899999999999999999999999999999999999999999999999999999999985
No 39
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=120.99 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=66.5
Q ss_pred CCCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+.+.+.|.|++ ++.+.++|+++.||.+||++|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 16 ~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~ 88 (93)
T 2l7r_A 16 PRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAG 88 (93)
T ss_dssp ----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEEC
T ss_pred CCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 45678999999 58899999999999999999999999999999999999999999999999999999999985
No 40
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.65 E-value=4.5e-16 Score=111.99 Aligned_cols=70 Identities=21% Similarity=0.334 Sum_probs=64.8
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 54 RLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 54 ~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
.|.|+. ++..+.+++++++||++||+.|++.+|+|++.|||+|+|+.++|+.+|.+|||++|++|+|+-.
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 567775 5688999999999999999999999999999999999999999999999999999999999853
No 41
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=3.5e-16 Score=118.16 Aligned_cols=74 Identities=20% Similarity=0.161 Sum_probs=68.1
Q ss_pred CcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecCC
Q 025281 51 PYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDP 124 (255)
Q Consensus 51 ~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p 124 (255)
.++.|.|+. .|+++.++|+++.||++||..|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+..+
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 467888886 36889999999999999999999999999999999999999999999999999999999999754
No 42
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=3.3e-16 Score=123.54 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=67.9
Q ss_pred CCcEEEEEEeC-CEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 50 APYLRLRIAFG-ALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 50 ~~~I~V~Vk~g-~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
.++|.|.|+.- |+++.|+|++++||++||+.|++.+|+||++|||+|.||.++|+.+|.+|||++|++|+|+
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 45799999953 7999999999999999999999999999999999999999999999999999999999986
No 43
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=8.7e-16 Score=112.29 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=64.2
Q ss_pred cEEEEEEe-CCEE-EEEE-EcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 52 YLRLRIAF-GALR-YEIS-VNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 52 ~I~V~Vk~-g~~~-~~I~-v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
.+.|.|+. .|+. |.++ ++++.||++||++|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+-.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 35667764 2344 6999 99999999999999999999999999999999999999999999999999999853
No 44
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=4.6e-16 Score=118.47 Aligned_cols=73 Identities=22% Similarity=0.181 Sum_probs=65.3
Q ss_pred CCcEEEEEEeC-CE--EEEEEEcCCCCHHHHHHHHHHhc--CCCCCceeEEecCeecCCccchhhc--CCCCCcEEEEec
Q 025281 50 APYLRLRIAFG-AL--RYEISVNSRATFGEVKKVLTGET--GLQAGDQVLIYRGKERENGEYLDMC--RVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk~g-~~--~~~I~v~~~sTvgdLK~~l~~~T--GVpp~~QKLiyKGK~ldD~~~L~~~--GVkdgSkImLv~ 122 (255)
+.+|.|+|++. +. .+.|++++++||++||++|++.+ |+|+++|||||+|+.|+|+.+|.+| ||+++++|||+-
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 45688888864 34 46677779999999999999999 9999999999999999999999999 999999999985
No 45
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=7.9e-16 Score=120.42 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=69.3
Q ss_pred CCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 50 APYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 50 ~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
...+.|.|++ +|+++.++|+++.||++||.+|+..+|+|+++|||+|+|+.++|+.+|..|||++|++|+|+..
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 3568899996 6799999999999999999999999999999999999999999999999999999999999963
No 46
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=7.3e-16 Score=119.90 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=68.8
Q ss_pred CCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 50 APYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
..++.|.|++.+.++.|+|+++.||++||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 20 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 20 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp TTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEEC
T ss_pred CCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEc
Confidence 46799999976556899999999999999999999999999999999999999999999999999999999964
No 47
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=1.6e-15 Score=113.65 Aligned_cols=74 Identities=23% Similarity=0.225 Sum_probs=67.6
Q ss_pred CCcEEEEEEe-CC-EEEEE-EEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 50 APYLRLRIAF-GA-LRYEI-SVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 50 ~~~I~V~Vk~-g~-~~~~I-~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
..++.|.|+. .+ .++.+ +|+++.||.+||++|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+-.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 3678888886 35 68999 599999999999999999999999999999999999999999999999999999853
No 48
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.63 E-value=7.3e-16 Score=117.64 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=66.2
Q ss_pred cEEEEEEeC---CEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEec-------CeecCCccchhhcCCCCCcEEEEe
Q 025281 52 YLRLRIAFG---ALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYR-------GKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 52 ~I~V~Vk~g---~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyK-------GK~ldD~~~L~~~GVkdgSkImLv 121 (255)
+|+|.|.|. ...+++.|+++.||++||++|+..+|+||+.|||+|+ |+.++|+.+|..|||++|++|||+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 578888874 4567899999999999999999999999999999985 788999999999999999999999
Q ss_pred c-CC
Q 025281 122 E-DP 124 (255)
Q Consensus 122 ~-~p 124 (255)
. +|
T Consensus 82 d~~P 85 (86)
T 4b6w_A 82 DLQP 85 (86)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 6 45
No 49
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=1.1e-15 Score=117.04 Aligned_cols=70 Identities=17% Similarity=0.344 Sum_probs=65.0
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHh---cCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 54 RLRIAF-GALRYEISVNSRATFGEVKKVLTGE---TGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 54 ~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~---TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
.|.|+. +|..+.++|+++.||++||+.|++. +|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEES
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEe
Confidence 577776 4688999999999999999999999 899999999999999999999999999999999999863
No 50
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=1.4e-15 Score=118.71 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=67.6
Q ss_pred CcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 51 PYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 51 ~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
.+|.|+|++.+.+|.|+|+++.||.+||++|++.+|||+++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus 16 ~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 16 HLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 88 (106)
T ss_dssp SEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEEC
T ss_pred ceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 4688899876556899999999999999999999999999999999999999999999999999999999963
No 51
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=1.3e-15 Score=118.38 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=65.3
Q ss_pred CcEEEEEEe--CC---EEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCc-cchhhcCCCCCcEEEEecC
Q 025281 51 PYLRLRIAF--GA---LRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENG-EYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 51 ~~I~V~Vk~--g~---~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~-~~L~~~GVkdgSkImLv~~ 123 (255)
..+.|+|++ ++ ++|.|+|++++||++||++|++.+|||+++|||+|+|+.++|+ .+|.+|||++|++|+|+..
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 446666665 54 7999999999999999999999999999999999999999877 6899999999999999964
No 52
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.63 E-value=1.1e-15 Score=116.08 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=65.2
Q ss_pred EEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 53 LRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 53 I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+.|.|+. ++..|.|+|++++||.+||..|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 72 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 72 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 4567774 568899999999999999999999999999999999999999999999999999999999985
No 53
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=123.69 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=68.5
Q ss_pred CCCcEEEEEE--eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIA--FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk--~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
-.++|+|+|+ .+++.+.|+|++++||++||+.|+...++|++.|+|||.||.++|+++|..|||++|++|||+-
T Consensus 12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi 87 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEI 87 (118)
T ss_dssp CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEE
T ss_pred cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEE
Confidence 3466778866 5678999999999999999999999999999999999999999999999999999999999995
No 54
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=1.2e-15 Score=115.33 Aligned_cols=71 Identities=23% Similarity=0.394 Sum_probs=64.6
Q ss_pred EEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 53 LRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 53 I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
+.|.|+ .+|+++.+++++++||++||++|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 445555 56789999999999999999999999999999999999999999999999999999999999853
No 55
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.60 E-value=1.9e-15 Score=119.38 Aligned_cols=72 Identities=21% Similarity=0.342 Sum_probs=68.1
Q ss_pred CcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 51 PYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 51 ~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
..+.|.|+ ..++.+.|.|+++.||.+||.+|++.+|+||++|||+|+|+.++|+.+|..|||++|++|+|+-
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 46899999 5679999999999999999999999999999999999999999999999999999999999985
No 56
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.60 E-value=3.2e-15 Score=114.64 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=64.9
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 54 RLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 54 ~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
.|.|+. ++.++.++|++++||++||.+|++.+|+||+.|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 566775 5688999999999999999999999999999999999999999999999999999999999864
No 57
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=117.45 Aligned_cols=73 Identities=21% Similarity=0.312 Sum_probs=68.8
Q ss_pred CCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 50 APYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.+++.|+|+. .+..+.++|+++.||++||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 5689999996 578899999999999999999999999999999999999999999999999999999999985
No 58
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.59 E-value=5.2e-15 Score=114.92 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=67.0
Q ss_pred CCCCcEEEEEEeCCE---EEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEec--Ce---e-cCCccchhhcCCCCCcEE
Q 025281 48 VPAPYLRLRIAFGAL---RYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYR--GK---E-RENGEYLDMCRVKDRSKV 118 (255)
Q Consensus 48 ~~~~~I~V~Vk~g~~---~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyK--GK---~-ldD~~~L~~~GVkdgSkI 118 (255)
.++..|+|.|++... .+++.|+++.||++||++|+..+||||+.|||+|+ |+ . ++|+.+|..|||++|++|
T Consensus 11 ~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 11 GKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 356789999997543 79999999999999999999999999999999999 55 3 489999999999999999
Q ss_pred EEec
Q 025281 119 ILTE 122 (255)
Q Consensus 119 mLv~ 122 (255)
+|+.
T Consensus 91 hlvD 94 (95)
T 2kjr_A 91 HVVD 94 (95)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9985
No 59
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=4.1e-15 Score=114.22 Aligned_cols=73 Identities=21% Similarity=0.122 Sum_probs=67.1
Q ss_pred CCcEEEEEEeCCE--EEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecC---ee----cCCccchhhcCCCCCcEEEE
Q 025281 50 APYLRLRIAFGAL--RYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRG---KE----RENGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 50 ~~~I~V~Vk~g~~--~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKG---K~----ldD~~~L~~~GVkdgSkImL 120 (255)
+..|+|+|++.+. .+++.|+++.||++||++|+..+||||++|||+|+| +. ++|+.+|..|||++|++|+|
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 4569999999877 699999999999999999999999999999999997 42 58899999999999999999
Q ss_pred ec
Q 025281 121 TE 122 (255)
Q Consensus 121 v~ 122 (255)
+.
T Consensus 85 ~d 86 (95)
T 1v6e_A 85 ID 86 (95)
T ss_dssp BC
T ss_pred EE
Confidence 86
No 60
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.59 E-value=3.3e-15 Score=109.60 Aligned_cols=72 Identities=8% Similarity=0.227 Sum_probs=67.4
Q ss_pred CcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 51 PYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 51 ~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+.|.|.|+. .|..+.++|.++.||++||+.+++.+|+||+.|||+|.|+.++|+.+|.+|||++|++|+|+-
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEE
Confidence 468888884 568899999999999999999999999999999999999999999999999999999999985
No 61
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.59 E-value=4.2e-15 Score=124.36 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=69.1
Q ss_pred CCCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+++++.|.|+ ++|+++.++|+++.||++||++|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 91 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 91 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeee
Confidence 4567899999 7789999999999999999999999999999999999999999999999999999999999985
No 62
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.59 E-value=3.2e-15 Score=117.70 Aligned_cols=72 Identities=21% Similarity=0.202 Sum_probs=66.1
Q ss_pred CcEEEEEEe----CCEEEEEEEcC-CCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 51 PYLRLRIAF----GALRYEISVNS-RATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 51 ~~I~V~Vk~----g~~~~~I~v~~-~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
..|.|.|+. +++.+.++|++ +.||++||++|++.+|+||++|||+|+|+.++|+.+|..|||++|++|+|+-
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 346677774 56889999998 9999999999999999999999999999999999999999999999999985
No 63
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.59 E-value=5.9e-15 Score=117.00 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=60.3
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.|.++.|+|+++.||++||.+|++.+|+||++|||+|+|+.++|+.+|..|||++|++|+|+-
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~ 106 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLAL 106 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEE
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 357899999999999999999999999999999999999999999999999999999999984
No 64
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.58 E-value=4e-15 Score=120.67 Aligned_cols=70 Identities=19% Similarity=0.164 Sum_probs=68.1
Q ss_pred cEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCC-------CcEEEEe
Q 025281 52 YLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKD-------RSKVILT 121 (255)
Q Consensus 52 ~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkd-------gSkImLv 121 (255)
.++|+|+++..++.+++.++.||.+||+.|+..+|+||+.|||||.|+.++|+.+|.+|||++ +++|+|+
T Consensus 2 ~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred ceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 379999999999999999999999999999999999999999999999999999999999999 9999998
No 65
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.58 E-value=4.3e-15 Score=120.41 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=67.7
Q ss_pred cEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCC-------CCcEEEEec
Q 025281 52 YLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVK-------DRSKVILTE 122 (255)
Q Consensus 52 ~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVk-------dgSkImLv~ 122 (255)
.|+|+|.++..+|.+++.++.||++||..|+..+||||+.|||||.||.|+|+.+|++|||+ ++|+|+|+-
T Consensus 2 ~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred cEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEe
Confidence 37899999988899999999999999999999999999999999999999999999999999 799999974
No 66
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.57 E-value=3.7e-15 Score=116.67 Aligned_cols=73 Identities=22% Similarity=0.150 Sum_probs=62.3
Q ss_pred CCCcEEEEEEeC-CE--EEEEEEcCCCCHHHHHHHHHHh-cCCCC-CceeEEecCeecCCccchhhc--CCCCCcEEEEe
Q 025281 49 PAPYLRLRIAFG-AL--RYEISVNSRATFGEVKKVLTGE-TGLQA-GDQVLIYRGKERENGEYLDMC--RVKDRSKVILT 121 (255)
Q Consensus 49 ~~~~I~V~Vk~g-~~--~~~I~v~~~sTvgdLK~~l~~~-TGVpp-~~QKLiyKGK~ldD~~~L~~~--GVkdgSkImLv 121 (255)
++..|.|.|+.. +. .+.|+++++.||++||++|++. +|+|| ++|||||+||.|+|+.+|.+| ||++|++|+|+
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 456788888853 34 4688889999999999999985 67775 999999999999999999999 99999999986
No 67
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.34 E-value=2.4e-16 Score=114.53 Aligned_cols=69 Identities=22% Similarity=0.408 Sum_probs=63.3
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.|.|++ +|.++.++++++.||++||+.|++.+|+||+.|||+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQ 71 (76)
Confidence 355554 457889999999999999999999999999999999999999999999999999999999985
No 68
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.55 E-value=1.1e-14 Score=112.20 Aligned_cols=74 Identities=8% Similarity=0.221 Sum_probs=68.5
Q ss_pred CCCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+...|.|.|+. .|..+.++|.++.||++||..|++.+|||++.|||||.|+.++|+.+|..|||++|++|+|+-
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEE
Confidence 34678999984 578899999999999999999999999999999999999999999999999999999999984
No 69
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.55 E-value=1.6e-14 Score=112.66 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=66.2
Q ss_pred CCcEEEEEEeCCE---EEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCe---e----cCCccchhhcCCCCCcEEE
Q 025281 50 APYLRLRIAFGAL---RYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGK---E----RENGEYLDMCRVKDRSKVI 119 (255)
Q Consensus 50 ~~~I~V~Vk~g~~---~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK---~----ldD~~~L~~~GVkdgSkIm 119 (255)
...|+|.|++... .+++.|+++.||++||++|+..+||||+.|||+|.|+ . ++|+.+|..|||++|++|+
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih 91 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH 91 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence 4578999997533 7999999999999999999999999999999999994 2 4889999999999999999
Q ss_pred EecC
Q 025281 120 LTED 123 (255)
Q Consensus 120 Lv~~ 123 (255)
|+..
T Consensus 92 lvd~ 95 (97)
T 2kj6_A 92 IIDL 95 (97)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9963
No 70
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=2.3e-14 Score=109.26 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=66.2
Q ss_pred CCCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCc-cchhhcCCCCCcEEEEecC
Q 025281 49 PAPYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENG-EYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 49 ~~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~-~~L~~~GVkdgSkImLv~~ 123 (255)
...+|.|.|+. .+..+.++|+++.||++||++|+..+ +++|||||+|+.|+|+ .+|.+|||++|++|+|+..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~ 77 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS 77 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence 35679999985 57899999999999999999999998 8999999999999988 9999999999999999964
No 71
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.54 E-value=2.5e-14 Score=117.74 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=67.4
Q ss_pred CcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 51 PYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 51 ~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+.+.|.|+. .|+++.++++++.||++||+.|++.+|+||+.|||+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~ 152 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 152 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 457788885 478999999999999999999999999999999999999999999999999999999999985
No 72
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.9e-14 Score=114.51 Aligned_cols=72 Identities=22% Similarity=0.333 Sum_probs=65.7
Q ss_pred cEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 52 YLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 52 ~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
...|.|+ ..|+++.++|+++.||++||.+|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~ 81 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLR 81 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEEC
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 3456665 45689999999999999999999999999999999999999999999999999999999999864
No 73
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=1.3e-14 Score=115.12 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=65.9
Q ss_pred CCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC---------------ceeEEecCeecC-CccchhhcCC
Q 025281 50 APYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAG---------------DQVLIYRGKERE-NGEYLDMCRV 112 (255)
Q Consensus 50 ~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~---------------~QKLiyKGK~ld-D~~~L~~~GV 112 (255)
+..+.|+|+ ..+++++|+|++++||++||+.|++.+|+||. .|+|||.|+.|+ |+.+|.+|||
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 456888887 56899999999999999999999999999984 569999999985 6799999999
Q ss_pred CCCcEEEEec
Q 025281 113 KDRSKVILTE 122 (255)
Q Consensus 113 kdgSkImLv~ 122 (255)
++|++|+|+-
T Consensus 85 ~~g~~l~lv~ 94 (105)
T 1v2y_A 85 RNRDEVSFIK 94 (105)
T ss_dssp CSSEEEEEEE
T ss_pred CCCCEEEEEe
Confidence 9999999985
No 74
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.52 E-value=3.7e-14 Score=114.01 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=68.1
Q ss_pred CcEEEEEEeCCE--EEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecC---e---e-cCCccchhhcCCCCCcEEEEe
Q 025281 51 PYLRLRIAFGAL--RYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRG---K---E-RENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 51 ~~I~V~Vk~g~~--~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKG---K---~-ldD~~~L~~~GVkdgSkImLv 121 (255)
..|+|.|++.+. .+++.|+++.||++||.+|+..+||||.+|||+|.| + . ++|+.+|..|||++|++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 579999998866 699999999999999999999999999999999998 4 2 478999999999999999999
Q ss_pred c-CCch
Q 025281 122 E-DPAS 126 (255)
Q Consensus 122 ~-~p~s 126 (255)
. .|.+
T Consensus 85 d~~p~~ 90 (122)
T 1t0y_A 85 DVTGGN 90 (122)
T ss_dssp ECTTCC
T ss_pred eCCCCC
Confidence 6 4543
No 75
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.51 E-value=3.3e-14 Score=116.93 Aligned_cols=71 Identities=23% Similarity=0.277 Sum_probs=66.8
Q ss_pred EEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE-e-cCeecCCccchhhcCCCCCcEEEEecC
Q 025281 53 LRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI-Y-RGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 53 I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi-y-KGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
+.|.|+ ++|+++.+++++++||++||++|++.+|+||++|||+ | +|+.++|+.+|.+|||++|++|+|+..
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 567777 5779999999999999999999999999999999999 9 799999999999999999999999976
No 76
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=2.4e-14 Score=115.37 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=66.5
Q ss_pred CCCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHH------hcCC--CCCceeEEecCeecCCccchhhcCCCCC--cE
Q 025281 49 PAPYLRLRIAF-GALRYEISVNSRATFGEVKKVLTG------ETGL--QAGDQVLIYRGKERENGEYLDMCRVKDR--SK 117 (255)
Q Consensus 49 ~~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~------~TGV--pp~~QKLiyKGK~ldD~~~L~~~GVkdg--Sk 117 (255)
+...|.|+|+. .|.+|+++|+++.||++||+.|++ ..|+ ||+.|||||.||.|+|+.+|.+|+|+.+ ++
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 45678899983 569999999999999999999999 7786 6999999999999999999999999866 68
Q ss_pred EEEecC
Q 025281 118 VILTED 123 (255)
Q Consensus 118 ImLv~~ 123 (255)
|||+-.
T Consensus 93 lhLvlr 98 (116)
T 1wgh_A 93 MHLVAR 98 (116)
T ss_dssp EEEEEC
T ss_pred EEEEcc
Confidence 888853
No 77
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.50 E-value=5.9e-14 Score=113.21 Aligned_cols=71 Identities=21% Similarity=0.323 Sum_probs=65.6
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecCC
Q 025281 54 RLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDP 124 (255)
Q Consensus 54 ~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p 124 (255)
.|.|+. ++.++.++|++++||++||+.|++.+|+||++|+|+|+|+.++|+.+|.+|||++|++|+|+..+
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 466763 56889999999999999999999999999999999999999999999999999999999999753
No 78
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.50 E-value=6e-14 Score=118.77 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=63.9
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.|.|+. .|++|.++++++.||++||++|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvl 71 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEE
Confidence 455653 468899999999999999999999999999999999999999999999999999999999985
No 79
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.49 E-value=1.1e-13 Score=111.59 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=65.1
Q ss_pred cEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 52 YLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 52 ~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.+.|.|+ ..|.++.++++++.||++||+.|++.+|+||+.|||+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 3556666 3468899999999999999999999999999999999999999999999999999999999985
No 80
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=99.48 E-value=7.1e-14 Score=115.34 Aligned_cols=109 Identities=15% Similarity=0.250 Sum_probs=85.4
Q ss_pred CCcEEEEecCCchhhhHhHHHhhhHHHHhHHHhhhhhhHHHHHHHHHHHHHhhhccCCC------CcchhhHhHHHHHHH
Q 025281 114 DRSKVILTEDPASIERRFIEMRRNAKIQSAHRAISNVSMEVDKLVEQVSAIEKSISNGV------KVPEVQITTLIEMLM 187 (255)
Q Consensus 114 dgSkImLv~~p~s~e~r~~e~kk~~~~~ka~~ais~v~~eVdkLa~~v~a~e~~v~~g~------kv~e~e~~~LsE~LM 187 (255)
+|++|||+|.+.+.|.. .+.++...+++++. .+...++.+..++..|++..-..+ +..++.+..++|.+|
T Consensus 1 ~G~KvMviGkK~~peee-~~lKkL~dveksv~---~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~Krik~~~E~~M 76 (135)
T 1i6z_A 1 GSPEFMLIGEKSNPEEE-VELKKLKDLEVSAE---KIANHLQELNKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFM 76 (135)
T ss_dssp CCCCCSSSCCCCCHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeCCCCChHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 69999999987776644 23555566655544 555677778788888865443222 456799999999999
Q ss_pred HHHHHccCccccc---hhhHHHHHHHHHHHHHHHHHhHhhhh
Q 025281 188 RQAIKLDSISAEG---DASAQKKLQGKRVQKCVETLDLLKIA 226 (255)
Q Consensus 188 ~qLLKLD~I~aeG---d~R~qRK~~VkrVQ~~le~LD~~k~~ 226 (255)
+.|++||++..-. ++|.+||.+|++||.+|.++|.+.++
T Consensus 77 k~LE~LDs~~ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~ 118 (135)
T 1i6z_A 77 KILEEIDTMVLPEQFKDSRLKRKNLVKKVQVFLAECDTVEQY 118 (135)
T ss_dssp HHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987743 89999999999999999999999876
No 81
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.47 E-value=9.4e-14 Score=120.34 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=67.0
Q ss_pred cEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 52 YLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 52 ~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.+.|.|+. .++++.|+|++++||.+||++|++.+|+||++|||+|+|+.|+|+.+|.+|||++|++|+|+-
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvl 176 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 176 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 37788885 578999999999999999999999999999999999999999999999999999999999985
No 82
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.47 E-value=3.5e-15 Score=120.51 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=0.0
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.|.|+. +|.++.|+|++++||++||..|++.+||||+.|||+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (128)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEE
Confidence 455554 468899999999999999999999999999999999999999999999999999999999985
No 83
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=112.22 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=66.8
Q ss_pred CCCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHH------hcCCC--CCceeEEecCeecCCccchhhcCCCCCc--E
Q 025281 49 PAPYLRLRIA-FGALRYEISVNSRATFGEVKKVLTG------ETGLQ--AGDQVLIYRGKERENGEYLDMCRVKDRS--K 117 (255)
Q Consensus 49 ~~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~------~TGVp--p~~QKLiyKGK~ldD~~~L~~~GVkdgS--k 117 (255)
+...|.|+|+ ..|.+++++|++++||++||+.|++ ..|+| |++|||||.||.|+|+.+|++|+|+.|+ +
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 93 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 3456899998 3469999999999999999999999 78985 8999999999999999999999999775 7
Q ss_pred EEEecCC
Q 025281 118 VILTEDP 124 (255)
Q Consensus 118 ImLv~~p 124 (255)
|||+-.+
T Consensus 94 lhlv~r~ 100 (125)
T 2gow_A 94 MHLVARE 100 (125)
T ss_dssp EEEEECS
T ss_pred EEEEecC
Confidence 8888543
No 84
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.46 E-value=2.9e-13 Score=107.56 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=62.4
Q ss_pred EEEEEEeC---CEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCC-CCCcEEEEec
Q 025281 53 LRLRIAFG---ALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRV-KDRSKVILTE 122 (255)
Q Consensus 53 I~V~Vk~g---~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GV-kdgSkImLv~ 122 (255)
+.|.|+-- +.+++++|+++.||++||++|++..|+||+.|||+|.|+.++|+.+|.+||| ++|++|+|+-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l 98 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYL 98 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEE
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEE
Confidence 44555532 3788999999999999999999999999999999999999999999999999 5999999985
No 85
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.45 E-value=1.9e-13 Score=114.28 Aligned_cols=70 Identities=21% Similarity=0.373 Sum_probs=64.1
Q ss_pred EEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 53 LRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 53 I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+.|.|+ ..++++.+.++++.||.+||.+|+..+|+||+.|||+|+|+.++|+.+|..|||++|++|+|+-
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~ 167 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 167 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEE
Confidence 344455 4568999999999999999999999999999999999999999999999999999999999984
No 86
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.39 E-value=2.6e-14 Score=119.78 Aligned_cols=70 Identities=23% Similarity=0.353 Sum_probs=0.0
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 54 RLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 54 ~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
.|.|+. +|.++.|+|++++||++||..|++.+||||++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence 345553 4578999999999999999999999999999999999999999999999999999999999864
No 87
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.39 E-value=9.6e-13 Score=121.59 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=69.0
Q ss_pred CCCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
...++.|.|+. .++++.|+|+++.||++||++|++.+||||++|||+|+|+.|+|+.+|.+|||++|++|+|+.
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 34678899996 568899999999999999999999999999999999999999999999999999999999984
No 88
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.37 E-value=1.2e-12 Score=107.15 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=62.0
Q ss_pred CcEEEEEE--eCCEEEEEEEcCCCCHHHHHHHH-----HHhcCCCC--CceeEEecCeecCCccchhhcCCCCC------
Q 025281 51 PYLRLRIA--FGALRYEISVNSRATFGEVKKVL-----TGETGLQA--GDQVLIYRGKERENGEYLDMCRVKDR------ 115 (255)
Q Consensus 51 ~~I~V~Vk--~g~~~~~I~v~~~sTvgdLK~~l-----~~~TGVpp--~~QKLiyKGK~ldD~~~L~~~GVkdg------ 115 (255)
..+.|+|+ .|....++++++++||.+||+.| ++..|+|+ ++|||||.||.|+|+.+|++|+|++|
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 44555555 45444489999999999999999 56789997 79999999999999999999999999
Q ss_pred cEEEEecCC
Q 025281 116 SKVILTEDP 124 (255)
Q Consensus 116 SkImLv~~p 124 (255)
++|+|+-.+
T Consensus 95 ~tmhlVlrl 103 (126)
T 1se9_A 95 TTMHVIIQA 103 (126)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecc
Confidence 789988543
No 89
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.36 E-value=1.1e-12 Score=98.83 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=61.7
Q ss_pred EEEEEeCCEEEEEE-EcCCCCHHHHHHHHHHhcCCCCCceeEEec--CeecC---CccchhhcCCCCCcEEEEecCC
Q 025281 54 RLRIAFGALRYEIS-VNSRATFGEVKKVLTGETGLQAGDQVLIYR--GKERE---NGEYLDMCRVKDRSKVILTEDP 124 (255)
Q Consensus 54 ~V~Vk~g~~~~~I~-v~~~sTvgdLK~~l~~~TGVpp~~QKLiyK--GK~ld---D~~~L~~~GVkdgSkImLv~~p 124 (255)
.|+|++.+..+.|. |++++||++||+.|++.+||||++|+|+|. ||.++ |+.+|.+|||++|++|+|..+.
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 56777665567788 999999999999999999999999999986 47663 6889999999999999998753
No 90
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.4e-12 Score=99.57 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=60.5
Q ss_pred CcEEEEEEeC-CEE--EEE-EEcCCCCHHHHHHHHHHh-cCCCCCceeEEec--CeecCCccchhhcCCCCCcEEEE
Q 025281 51 PYLRLRIAFG-ALR--YEI-SVNSRATFGEVKKVLTGE-TGLQAGDQVLIYR--GKERENGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 51 ~~I~V~Vk~g-~~~--~~I-~v~~~sTvgdLK~~l~~~-TGVpp~~QKLiyK--GK~ldD~~~L~~~GVkdgSkImL 120 (255)
.++.|.|+.. +.. +.| +|++++||++||+.|++. .|+||++|||+|. ||.++|+.+|.+|||++|++|++
T Consensus 9 ~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 9 KHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 3577888743 233 368 999999999999999994 8999999999965 99999999999999999999876
No 91
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.35 E-value=1.5e-12 Score=102.18 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=63.9
Q ss_pred cEEEEEEeCCEEEEEEEc-CCCCHHHHHHHHHHhcCCCCCceeEEecCe-----------e----cCCccchhhcCCCCC
Q 025281 52 YLRLRIAFGALRYEISVN-SRATFGEVKKVLTGETGLQAGDQVLIYRGK-----------E----RENGEYLDMCRVKDR 115 (255)
Q Consensus 52 ~I~V~Vk~g~~~~~I~v~-~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK-----------~----ldD~~~L~~~GVkdg 115 (255)
.+.|+|+...-++.|+|+ +++||.+||++|++.+||||+.|+|+|.|+ . ++|+.+|.+|||++|
T Consensus 7 ~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 7 GTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp CEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred eEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 366888754445689999 999999999999999999999999999998 3 588999999999999
Q ss_pred cEEEEecCC
Q 025281 116 SKVILTEDP 124 (255)
Q Consensus 116 SkImLv~~p 124 (255)
++|+|+..+
T Consensus 87 ~~L~l~~~~ 95 (107)
T 1wf9_A 87 SMVYLAYEG 95 (107)
T ss_dssp CEEECCCSS
T ss_pred CEEEEEeCC
Confidence 999999654
No 92
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.33 E-value=1.4e-12 Score=123.04 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=64.5
Q ss_pred CcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHH---hcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 51 PYLRLRIAF-GALRYEISVNSRATFGEVKKVLTG---ETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 51 ~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~---~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
.++.|+||+ .+++|.|+|+++.||++||++|+. .+|||+++|||||+||.|+|+.+|..|||++|++|+++
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~l 80 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVM 80 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEE
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEE
Confidence 457788886 379999999999999999999999 78899999999999999999999999999999999444
No 93
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.30 E-value=1.3e-11 Score=94.74 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=66.1
Q ss_pred CCCcEEEEEEe----CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecC------ee-c-CCccchhhcCCCCCc
Q 025281 49 PAPYLRLRIAF----GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRG------KE-R-ENGEYLDMCRVKDRS 116 (255)
Q Consensus 49 ~~~~I~V~Vk~----g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKG------K~-l-dD~~~L~~~GVkdgS 116 (255)
....|+|+|++ ++..+++.|+++.||++||.+|+..||+||..|||+|.+ .. + +|..+|..|||.+|+
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 34578888875 467899999999999999999999999999999999984 22 4 678899999999999
Q ss_pred EEEEec-CCc
Q 025281 117 KVILTE-DPA 125 (255)
Q Consensus 117 kImLv~-~p~ 125 (255)
+|+++. +|.
T Consensus 86 ~I~V~d~~p~ 95 (97)
T 1wjn_A 86 CLLVRWSGPS 95 (97)
T ss_dssp EEEEECCSSC
T ss_pred EEEEEecCCC
Confidence 999986 454
No 94
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=99.21 E-value=2.9e-11 Score=99.80 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=81.7
Q ss_pred cEEEEecCCchhhhHhHHHhhhHHHHhHHHhhhhhhHHHHHHH-HHHHHHhhhccCCC------CcchhhHhHHHHHHHH
Q 025281 116 SKVILTEDPASIERRFIEMRRNAKIQSAHRAISNVSMEVDKLV-EQVSAIEKSISNGV------KVPEVQITTLIEMLMR 188 (255)
Q Consensus 116 SkImLv~~p~s~e~r~~e~kk~~~~~ka~~ais~v~~eVdkLa-~~v~a~e~~v~~g~------kv~e~e~~~LsE~LM~ 188 (255)
++||++|.+.+.+.. .+.+.....++++..+ ..+++.+. .++..+++.+-..+ ++.++.+..++|.+|+
T Consensus 1 ~KvMvlGkk~~~eed-~~lK~L~~~Ek~~~~~---~~kl~~~n~~el~~iekGFL~k~l~~ea~kkldKrik~~~E~~MK 76 (137)
T 1t7s_A 1 DKIIVMGGKNALVDD-AGFKMLMQYEKHNLSN---LQKAYDLNLRDVADLERGFLEKPKQVEMGKKLEKKVKYFNEEAER 76 (137)
T ss_dssp CCCEEECSSSEEECH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCcchh-HHHHHHHHHHHHHHHH---HHHHHHccHHHHHHHHHhhhccHhHHhHHHHHHHHHHHHHHHHHH
Confidence 589999987765433 2355555665555543 35666676 67888887665443 4456999999999999
Q ss_pred HHHHccCccc-c--------chhhHHHHHHHHHHHHHHHHHhHhhhh
Q 025281 189 QAIKLDSISA-E--------GDASAQKKLQGKRVQKCVETLDLLKIA 226 (255)
Q Consensus 189 qLLKLD~I~a-e--------Gd~R~qRK~~VkrVQ~~le~LD~~k~~ 226 (255)
.|..||++.. + -++|.+||.+|++||.+|.++|.+.++
T Consensus 77 ~LE~LDsl~i~~~~t~~~q~~~~R~KRK~lV~~IQ~~L~~~D~l~~~ 123 (137)
T 1t7s_A 77 HLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRR 123 (137)
T ss_dssp HHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccCCcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHHH
Confidence 9999999755 2 279999999999999999999999886
No 95
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=99.21 E-value=5.9e-11 Score=95.24 Aligned_cols=91 Identities=14% Similarity=0.233 Sum_probs=74.3
Q ss_pred HHhhhHHHHhHHHhhhhhhHHHHHHHHHHHHHhhhccCCC------CcchhhHhHHHHHHHHHHHHccCccc---cchhh
Q 025281 133 EMRRNAKIQSAHRAISNVSMEVDKLVEQVSAIEKSISNGV------KVPEVQITTLIEMLMRQAIKLDSISA---EGDAS 203 (255)
Q Consensus 133 e~kk~~~~~ka~~ais~v~~eVdkLa~~v~a~e~~v~~g~------kv~e~e~~~LsE~LM~qLLKLD~I~a---eGd~R 203 (255)
+.++...+++++. .+..+++.+..++..+++..-..+ ++.++++..++|.||+.|..||++.. +-++|
T Consensus 9 ~lK~L~~veksv~---~~~kkl~~~~~el~~iekGFL~kel~~eal~kldKrik~~~E~~MK~LE~lDsl~i~e~~~~~R 85 (114)
T 1hx1_B 9 ELKKLKHLEKSVE---KIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDSR 85 (114)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCCCTTCHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHH
Confidence 3556666655554 555788888889999987654333 66789999999999999999999877 22899
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh
Q 025281 204 AQKKLQGKRVQKCVETLDLLKIA 226 (255)
Q Consensus 204 ~qRK~~VkrVQ~~le~LD~~k~~ 226 (255)
..||.+|++||.+|..+|.+.++
T Consensus 86 ~kRK~lV~~iQ~~l~~cD~l~~~ 108 (114)
T 1hx1_B 86 LKRKGLVKKVQAFLAECDTVEQN 108 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999876
No 96
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.05 E-value=6.4e-10 Score=85.97 Aligned_cols=74 Identities=9% Similarity=0.163 Sum_probs=67.9
Q ss_pred CCCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
..+.|.|+|+. .+..+.+.|.+++++..|++.+++..|+|+..|||+|.|+.++++.++.+|++.+|+.|.++-
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 78 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 78 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 35779999994 567889999999999999999999999999999999999999999999999999999999984
No 97
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.03 E-value=2.3e-11 Score=105.59 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred EEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 55 LRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 55 V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|.|+. .+.++.|+|+++.||.+||..|++.+||||+.|||||.|+.|+|+.+|+ ++|+|+|+-
T Consensus 3 I~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvl 66 (189)
T 2xzm_9 3 VQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSL 66 (189)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEE
Confidence 34442 3588999999999999999999999999999999999999999999998 999999984
No 98
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.99 E-value=1.7e-09 Score=83.24 Aligned_cols=74 Identities=9% Similarity=0.175 Sum_probs=67.8
Q ss_pred CCCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+++.|+|+|+. .+..+.+.|.+++++..|+...++..|+|+..|||+|.|+.+.++.+..+|++.+|+.|.++-
T Consensus 2 ~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 76 (91)
T 2io0_B 2 ANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 76 (91)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 45789999994 567889999999999999999999999999999999999999999999999999999999985
No 99
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.99 E-value=2e-09 Score=78.73 Aligned_cols=69 Identities=10% Similarity=0.193 Sum_probs=64.6
Q ss_pred EEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 53 LRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 53 I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
|+|+|+. .|..+.+.|.+++++..|+...++..|+|+..|||+|.|+.+.++.+..++|+.+|+.|.++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7788883 56788999999999999999999999999999999999999999999999999999999885
No 100
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.97 E-value=3.3e-09 Score=79.19 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=67.0
Q ss_pred CCcEEEEEEe-CC-EEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 50 APYLRLRIAF-GA-LRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk~-g~-~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
...|.|+|+. .+ ..+.+.|.+++++..|+...++..|+++..|||+|.|+.+.++.+..+|++.+|+.|.+++
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 4678999984 45 4789999999999999999999999999999999999999999999999999999999874
No 101
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.89 E-value=8e-09 Score=79.46 Aligned_cols=73 Identities=10% Similarity=0.176 Sum_probs=67.7
Q ss_pred CCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 50 APYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
...|+|+|+. .+..+.+.|.+++++..|+...++..|++++.|||+|.|+.+.++.+..+|++.+|+.|.++-
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 4679999984 567788999999999999999999999999999999999999999999999999999999974
No 102
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.84 E-value=1.1e-08 Score=80.69 Aligned_cols=73 Identities=10% Similarity=0.176 Sum_probs=67.8
Q ss_pred CCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 50 APYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
...|+|+|+. .+..+.+.|.+++++..|+...++..|+++..|||+|.|+.+.++.+..+|++.+|+.|.++-
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 4679999984 567788999999999999999999999999999999999999999999999999999999984
No 103
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.80 E-value=1.9e-08 Score=79.75 Aligned_cols=74 Identities=9% Similarity=0.212 Sum_probs=68.6
Q ss_pred CCCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+...|+|+|+..+..+.+.|..++++..|+...++..|+++..|||+|.|+.+.++.+..+|++.+|+.|.++-
T Consensus 28 ~~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 28 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEe
Confidence 35679999987667888999999999999999999999999999999999999999999999999999999874
No 104
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.79 E-value=1.8e-08 Score=80.35 Aligned_cols=74 Identities=7% Similarity=0.177 Sum_probs=68.4
Q ss_pred CCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 50 APYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 50 ~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
...|.|+|+. .+..+.+.|.++++|..|+...++..|+|++.|||+|.|+.+.++.+..+|++.+|+.|.++-.
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 4679999984 5677899999999999999999999999999999999999999999999999999999999853
No 105
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.41 E-value=1.1e-06 Score=70.68 Aligned_cols=74 Identities=8% Similarity=0.221 Sum_probs=66.6
Q ss_pred CCCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+.+.|+|+|+. .+....+.|..++++..|+...++..|+++..+|++|.|..+.++.+..++++.||..|.++-
T Consensus 37 ~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 37 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 35789999985 356678999999999999999999999999999999999999999999999999999999874
No 106
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.2e-06 Score=76.54 Aligned_cols=74 Identities=9% Similarity=0.212 Sum_probs=69.5
Q ss_pred CCCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+..-|+|+|+..+..+.+.|..++++..|+...++..|+|+..+|++|.|+.+.++.+..++|+.+|+.|.++-
T Consensus 26 ~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 26 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp CCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 45789999987788899999999999999999999999999999999999999999999999999999999974
No 107
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.31 E-value=3.7e-07 Score=68.43 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=55.5
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCee---c--CCccchhhcCCCCCcEEEEe
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKE---R--ENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~---l--dD~~~L~~~GVkdgSkImLv 121 (255)
+.|+|.+..-++-|++++++||++|++.|++.++++++.|.|.+.-.. + .++.+|..+||++|+.|+|.
T Consensus 5 m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 556776666688899999999999999999999999988777533222 2 36778999999999999874
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.27 E-value=1.8e-06 Score=67.30 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=51.8
Q ss_pred eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCee--cCCccchhhcCC-CCCcEEEEec
Q 025281 59 FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKE--RENGEYLDMCRV-KDRSKVILTE 122 (255)
Q Consensus 59 ~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~--ldD~~~L~~~GV-kdgSkImLv~ 122 (255)
..+..|.++|.++.|+..||++|++.|||||+.|+|||.|+. ++...+-..|-- ...+-|+|+.
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 357889999999999999999999999999999999999986 555555444443 3346788874
No 109
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.25 E-value=2.5e-06 Score=74.66 Aligned_cols=74 Identities=11% Similarity=0.235 Sum_probs=69.3
Q ss_pred CCCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+...|+|+|+..+..+.+.|..++++..|+...++..||++..+|++|.|+.+.++.+..++++.||++|.++-
T Consensus 54 p~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~l 127 (207)
T 3tix_A 54 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHR 127 (207)
T ss_dssp -CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECC
T ss_pred CCCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 45689999997788899999999999999999999999999999999999999999999999999999999985
No 110
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=4.4e-05 Score=58.29 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=57.5
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhccCCCCcchhhHhHHHHHHHHHHHHccCccccc--hhhHHHHHHHHHHHHHHHHHh
Q 025281 146 AISNVSMEVDKLVEQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLDSISAEG--DASAQKKLQGKRVQKCVETLD 221 (255)
Q Consensus 146 ais~v~~eVdkLa~~v~a~e~~v~~g~kv~e~e~~~LsE~LM~qLLKLD~I~aeG--d~R~qRK~~VkrVQ~~le~LD 221 (255)
-|..|+.++-.|-+.+..+ .|+ -+.|..+-|.|-+-++.||.|+++| ++|..||.+|++||.++.-||
T Consensus 11 ~Ie~v~~r~r~l~~ell~~-----~~~---s~~yl~~k~eLq~Li~~LDev~~~~NpcIReaRRrAV~EvQ~lit~lD 80 (89)
T 2d9d_A 11 KIEKVLKRMREIKNELLQA-----QNP---SELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYID 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----SCT---TTHHHHHHHHHHHHHHHHGGGCSCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-----cCc---hHHHhhhHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666676666666 344 7789999999988899999999999 899999999999999999999
No 111
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.84 E-value=0.00017 Score=58.18 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=76.3
Q ss_pred CCCccCCCCCCcccccccccCCceeeeeeCCCCCCCCCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCce
Q 025281 14 ESSTTTSSTSTEDEIDCELRPGGMLVQKRSEKTDVPAPYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQ 92 (255)
Q Consensus 14 ~~~~~~~~~~~~~~~~we~rpggm~vq~r~~~~~~~~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~Q 92 (255)
|.|..+++....+..+|+..||=-.- .....+...+.++|.|.. .|.++.-.|+++.|+.+|..-|... |.++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F 83 (124)
T 1wj4_A 7 GTATNHQGLPAVDSEILEMPPEKADG--VVEGIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERF 83 (124)
T ss_dssp CCCCCCCCCCCCCCCSCSCCCCCCCC--CCCCCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTE
T ss_pred CcccccccccccChhhhhcCCCCCCC--cccccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCe
Confidence 33333333335677789987762220 011223346778888884 5788999999999999999999887 8888888
Q ss_pred eEE--ecCeec---CCccchhhcCCCCCcEEEEec
Q 025281 93 VLI--YRGKER---ENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 93 KLi--yKGK~l---dD~~~L~~~GVkdgSkImLv~ 122 (255)
.|+ |=.|.+ +.+.+|.++|+.+...|+|..
T Consensus 84 ~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 84 ELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 887 667776 347899999999988888764
No 112
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.74 E-value=0.00022 Score=55.52 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=66.2
Q ss_pred CCCcEEEEEEe-CC-EEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAF-GA-LRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~-g~-~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
....|+|+|+. .+ +.+.+.|..++++.-|....++..|+++...|++|-|..+..+.+..++++.||..|-+++
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~~ 97 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG 97 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 35789999985 34 4678899999999999999999999999999999999999999999999999999997753
No 113
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.73 E-value=4.3e-06 Score=74.05 Aligned_cols=74 Identities=9% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+...|+|+|...+....+.|..++++..|++..++..|+++..+|++|.|+.+.++.+..++++.||+.|.++-
T Consensus 18 p~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence 45678888876677788899999999999999999999999999999999999999999999999999999974
No 114
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.58 E-value=0.00023 Score=61.65 Aligned_cols=74 Identities=9% Similarity=0.212 Sum_probs=68.2
Q ss_pred CCCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+...|+|+|...+..+.+.|..++++.-|++..++..|++++.+|++|.|..+.++.+-..+...|+..|-+..
T Consensus 18 ~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence 35789999997667778999999999999999999999999999999999999999999999999999998874
No 115
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.52 E-value=0.00022 Score=53.96 Aligned_cols=70 Identities=9% Similarity=0.197 Sum_probs=61.6
Q ss_pred CcEEEEEE---eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----ceeEEecCeecCCccchhhcCCCCCcEEEE
Q 025281 51 PYLRLRIA---FGALRYEISVNSRATFGEVKKVLTGETGLQAG-----DQVLIYRGKERENGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 51 ~~I~V~Vk---~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~-----~QKLiyKGK~ldD~~~L~~~GVkdgSkImL 120 (255)
.-|.|++- |.++.|++.||.+-|+..|.+.+.+..+++.. ..|+.-||..+.++..|.+|||+||+.|-+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 34677777 58899999999999999999999999999652 478889999999999999999999998865
No 116
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.40 E-value=3.1e-05 Score=72.98 Aligned_cols=85 Identities=9% Similarity=0.227 Sum_probs=2.6
Q ss_pred CCCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecCCchhh
Q 025281 49 PAPYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTEDPASIE 128 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~p~s~e 128 (255)
+.+.|+|+|+..+..+.+.|..++++..|++..++..|+++..+|++|.|+.+.++.+..++|++||+.|.++-.-...+
T Consensus 18 ~~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 35689999987777778899999999999999999999999999999999999999999999999999999986544444
Q ss_pred hHhHH
Q 025281 129 RRFIE 133 (255)
Q Consensus 129 ~r~~e 133 (255)
+.+..
T Consensus 98 ~~Yl~ 102 (360)
T 3ix6_A 98 RTYLD 102 (360)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 117
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.40 E-value=0.0011 Score=50.24 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=61.3
Q ss_pred cEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-ceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 52 YLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAG-DQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 52 ~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~-~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
.|++.... .+.-+.+.|+++++|..|-..-...-|||+. ..+|+|-|-.++.+.++.+|++.||..|-++
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 35555442 3456889999999999999999999999999 9999999999999999999999999988776
No 118
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.21 E-value=0.0021 Score=50.08 Aligned_cols=73 Identities=10% Similarity=0.081 Sum_probs=67.0
Q ss_pred CCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 50 APYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
...|+|+|..++....+.|-.++.+.-|.+..+...|+++...|++|.|..+.++.+-..+|+.+|..|=++-
T Consensus 19 ~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 19 PRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 3459999998888888999999999999999999999999999999999999999999999999999987764
No 119
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.17 E-value=5.9e-05 Score=70.30 Aligned_cols=73 Identities=8% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 50 APYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
...|+|+|+..+..+.+.|..++++.-|++..++..|+++..++++|.|+.+.++.+-.++|+.||..|.++-
T Consensus 28 ~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~ 100 (389)
T 4da1_A 28 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHR 100 (389)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeee
Confidence 4678999987777778999999999999999999999999999999999999999999999999999999875
No 120
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.08 E-value=0.00086 Score=54.75 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=55.8
Q ss_pred EEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-------------------------------------ceeEE
Q 025281 54 RLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAG-------------------------------------DQVLI 95 (255)
Q Consensus 54 ~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~-------------------------------------~QKLi 95 (255)
.++|+ .++..+.+.|+.+.||++++..|+...||++. .|||-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 34555 46688999999999999999999999999855 45553
Q ss_pred e--cCeecCCccchhhcCCCCCcEEEEe
Q 025281 96 Y--RGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 96 y--KGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
. .+..+|+..+|.++||.++++|+|=
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 3 2356899999999999999998874
No 121
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.93 E-value=0.0025 Score=49.18 Aligned_cols=70 Identities=7% Similarity=0.065 Sum_probs=64.0
Q ss_pred EEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEecC
Q 025281 54 RLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 54 ~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~~ 123 (255)
.|.|- .++.++.|.|.|+.|+-++=+...+..|+.+++=-|.|.+|.+|-..+++-.||-+|+++-|+..
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 45555 46789999999999999999999999999999999999999999999999999999999999974
No 122
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.84 E-value=0.0058 Score=45.27 Aligned_cols=72 Identities=14% Similarity=0.181 Sum_probs=58.7
Q ss_pred CCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE--ecCeec---CCccchhhcCCCCCcEEEEec
Q 025281 50 APYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI--YRGKER---ENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi--yKGK~l---dD~~~L~~~GVkdgSkImLv~ 122 (255)
.++.+|.|.. +|.++.-.|+++.|+.+|..-|.. .|.++...+|+ |=.|.+ |.+.+|.++|+.++..|+|-+
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 4667777773 567888899999999999999988 67888899998 556766 457899999999988888743
No 123
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.04 E-value=0.015 Score=44.20 Aligned_cols=49 Identities=12% Similarity=0.277 Sum_probs=45.1
Q ss_pred CCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCe
Q 025281 50 APYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGK 99 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK 99 (255)
+..+.|+|.|. -++.|.+|+..++.+|+.+|++..++|++.-+|-||-.
T Consensus 3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 45589999998 78999999999999999999999999999999999974
No 124
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.49 E-value=0.099 Score=40.75 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=58.8
Q ss_pred CCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE--ecCeecC---CccchhhcCCCCCcEEEEec
Q 025281 50 APYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI--YRGKERE---NGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi--yKGK~ld---D~~~L~~~GVkdgSkImLv~ 122 (255)
.+..+|.|. .+|.++.-.|+++.|+.+|..-|....+.+.....|+ |--|.+. .+.+|.++|+.+...|++..
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 345667777 3568899999999999999999999988887788887 5556654 36799999999998887764
No 125
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=94.69 E-value=0.14 Score=39.13 Aligned_cols=50 Identities=4% Similarity=0.048 Sum_probs=44.0
Q ss_pred CCCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCc-eeEEecC
Q 025281 49 PAPYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGD-QVLIYRG 98 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~-QKLiyKG 98 (255)
++..|+|++.|+|..+-+.++++.++.+|.+++.+..++++.. ..|-|+.
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 4567999999999999999999999999999999999997654 6777875
No 126
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.25 E-value=0.33 Score=41.85 Aligned_cols=68 Identities=7% Similarity=0.105 Sum_probs=52.1
Q ss_pred EEEEEeCCEE---EEEEEcCCCCHHHHHHHHHHhcCCCCC-ceeEE--e-cCe--ecCC-ccchhhcCCCCCcEEEEe
Q 025281 54 RLRIAFGALR---YEISVNSRATFGEVKKVLTGETGLQAG-DQVLI--Y-RGK--EREN-GEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 54 ~V~Vk~g~~~---~~I~v~~~sTvgdLK~~l~~~TGVpp~-~QKLi--y-KGK--~ldD-~~~L~~~GVkdgSkImLv 121 (255)
.+++...+.. +.+.++...||.+|++.+..+++||++ .-||- | .++ .++| +.+|.++++.+|..|+|=
T Consensus 129 ~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE 206 (217)
T 4a3p_A 129 ELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 206 (217)
T ss_dssp EEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred EEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence 3445544333 557889999999999999999999997 68885 3 333 3565 569999999999998863
No 127
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.11 E-value=0.35 Score=42.13 Aligned_cols=68 Identities=7% Similarity=0.088 Sum_probs=51.6
Q ss_pred EEEEEeCCE---EEEEEEcCCCCHHHHHHHHHHhcCCCCC-ceeEEe-c--Ce--ecCC-ccchhhcCCCCCcEEEEe
Q 025281 54 RLRIAFGAL---RYEISVNSRATFGEVKKVLTGETGLQAG-DQVLIY-R--GK--EREN-GEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 54 ~V~Vk~g~~---~~~I~v~~~sTvgdLK~~l~~~TGVpp~-~QKLiy-K--GK--~ldD-~~~L~~~GVkdgSkImLv 121 (255)
.+++...+. .+.+.++...||.+|++.+..+++|+++ .-||-. . ++ .++| +.+|.++++.++..|+|=
T Consensus 141 ~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE 218 (231)
T 3jyu_A 141 ELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 218 (231)
T ss_dssp EEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence 445554433 2446678889999999999999999997 699964 2 12 3565 689999999999998773
No 128
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.09 E-value=0.27 Score=45.01 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=57.6
Q ss_pred cEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcC----CCCCceeEEe------cCeecCCccchhhcCCCCCcEEEEe
Q 025281 52 YLRLRIAFGALRYEISVNSRATFGEVKKVLTGETG----LQAGDQVLIY------RGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 52 ~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TG----Vpp~~QKLiy------KGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
.++++|...+.+..+.|++++||+|....|.+... .++++=-|+. ||..+++..+|+.||+++|..|..-
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 3 ALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred cEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 45666666689999999999999999999977764 3567778877 6777888889999999999877664
No 129
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.58 E-value=0.46 Score=36.80 Aligned_cols=72 Identities=8% Similarity=0.001 Sum_probs=57.0
Q ss_pred CCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE--ecCeecC--CccchhhcCCCCCcEEEEec
Q 025281 50 APYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI--YRGKERE--NGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi--yKGK~ld--D~~~L~~~GVkdgSkImLv~ 122 (255)
.+.++|.|. .+|.++.-.|+.+.|+.+|..-|... +..+...+|+ |=.|.+. .+.+|.++|+.+...|+|-.
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 456788887 45678889999999999999999865 5566778887 5566654 57899999999988887754
No 130
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=93.06 E-value=0.24 Score=37.78 Aligned_cols=68 Identities=7% Similarity=0.129 Sum_probs=48.8
Q ss_pred CcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEe-cCe----ecCCccchhhcCCCCCcEEEEe
Q 025281 51 PYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIY-RGK----ERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 51 ~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiy-KGK----~ldD~~~L~~~GVkdgSkImLv 121 (255)
..++|++-|.+.-+.|-||++.++.+|+..|.....+. .+.|++ ++- .+.+++.|+. -|..++||+|.
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykde~~g~~i~sD~dl~~-aiqrn~KL~l~ 83 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLFDGSGEEIKTDSQVSN-IIQAKLKISVH 83 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCSSSCCSCCCSHHHHHH-HHHTTCCEEEE
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecCCCCCCcccCHHHHHH-HHHhcCeeEEe
Confidence 56899999999999999999999999999999999994 555554 432 1222333322 24556666654
No 131
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.02 E-value=0.21 Score=39.88 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=51.5
Q ss_pred CCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHh-cCCCCCceeEE--ecCeecCC-ccchhhcCCCCCcEE
Q 025281 50 APYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGE-TGLQAGDQVLI--YRGKEREN-GEYLDMCRVKDRSKV 118 (255)
Q Consensus 50 ~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~-TGVpp~~QKLi--yKGK~ldD-~~~L~~~GVkdgSkI 118 (255)
.++.+|.|. .+|.++.-.|+.+.||.+|+.-|... .+.+.....|+ |-.|.++| +.+|.++|+.+...|
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 344445554 24578889999999999999999886 45666778887 55677755 689999999985443
No 132
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=91.33 E-value=0.68 Score=41.72 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=54.2
Q ss_pred EEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCe-e-cCCccchhhcCCCC-CcEEEEec
Q 025281 54 RLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGK-E-RENGEYLDMCRVKD-RSKVILTE 122 (255)
Q Consensus 54 ~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK-~-ldD~~~L~~~GVkd-gSkImLv~ 122 (255)
.+........+.+.+.+..|+.+|++.++..||++++.|.|+|.+. . ++...+.+.++-.. .+-|+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (396)
T 4eut_A 314 HVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 385 (396)
T ss_dssp EEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEE
T ss_pred EEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEe
Confidence 4445566788889999999999999999999999999999999994 4 55566666665533 36677765
No 133
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=91.22 E-value=2.4 Score=29.97 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=47.5
Q ss_pred EEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 53 LRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 53 I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
++|+|.......+++++...|+.+|.+.+ ++++..--+...|.....+. -|++|++|-++.
T Consensus 5 m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 56777666666778888889999999876 67787777888888765444 579999998874
No 134
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=91.10 E-value=0.42 Score=37.20 Aligned_cols=48 Identities=10% Similarity=0.206 Sum_probs=39.9
Q ss_pred CcEEEEEEeC--------CEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----ceeEEecC
Q 025281 51 PYLRLRIAFG--------ALRYEISVNSRATFGEVKKVLTGETGLQAG-----DQVLIYRG 98 (255)
Q Consensus 51 ~~I~V~Vk~g--------~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~-----~QKLiyKG 98 (255)
..|+|+|.|+ +..+.|-|+++.+|.+|..+|....+++.. ..||=||.
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 4599999998 667899999999999999999999998532 24777776
No 135
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=86.95 E-value=0.51 Score=38.02 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=28.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCCCceeEEe
Q 025281 65 EISVNSRATFGEVKKVLTGETGLQAGDQVLIY 96 (255)
Q Consensus 65 ~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiy 96 (255)
.+.|.-++||.+|+..|+..+|+|++.|||-+
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 45778899999999999999999999999964
No 136
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.35 E-value=3.6 Score=31.51 Aligned_cols=72 Identities=11% Similarity=0.212 Sum_probs=59.4
Q ss_pred CCCCcEEEEEEeC-CEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEe--cCe-ecCCccchhhcCCCCCcEEEEec
Q 025281 48 VPAPYLRLRIAFG-ALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIY--RGK-ERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 48 ~~~~~I~V~Vk~g-~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiy--KGK-~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+|..|+++-|.|. .++.-+-|+|..++.+|--.|.+.-.+.|+.--|+- +-. .||=+..|.+|||+. +..+.
T Consensus 6 ~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d 81 (91)
T 2daj_A 6 SGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMD 81 (91)
T ss_dssp CCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEE
T ss_pred CCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheec
Confidence 5778999999975 666778999999999999999999999999888873 222 377788999999986 55553
No 137
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=85.59 E-value=1.9 Score=31.23 Aligned_cols=59 Identities=12% Similarity=0.309 Sum_probs=41.9
Q ss_pred EEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+|+|+ +|....+++++..+|+.||=+ ..|+|++.--++..|+....+. +.+|.+|-++.
T Consensus 2 ~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~ 61 (74)
T 2l32_A 2 NVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR 61 (74)
T ss_dssp EEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS
T ss_pred EEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEE
Confidence 34444 355566789999999998755 4899999887777887654333 34588888763
No 138
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=83.36 E-value=10 Score=28.15 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=45.4
Q ss_pred cEEEEEEe--------CCEEEEEEEcCCCCHHHHHHHHHHhc-CC----------CCCceeEEecCeecCCccchhhcCC
Q 025281 52 YLRLRIAF--------GALRYEISVNSRATFGEVKKVLTGET-GL----------QAGDQVLIYRGKERENGEYLDMCRV 112 (255)
Q Consensus 52 ~I~V~Vk~--------g~~~~~I~v~~~sTvgdLK~~l~~~T-GV----------pp~~QKLiyKGK~ldD~~~L~~~GV 112 (255)
+++|+|++ |....+++++..+|+++|.+.|...- ++ ......+...|+..+. ++-|
T Consensus 9 ~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L 83 (98)
T 1vjk_A 9 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEEL 83 (98)
T ss_dssp CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBC
T ss_pred cEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCC
Confidence 46777775 44466788888899999999987653 11 1233456666765542 4568
Q ss_pred CCCcEEEEec
Q 025281 113 KDRSKVILTE 122 (255)
Q Consensus 113 kdgSkImLv~ 122 (255)
++|++|.++.
T Consensus 84 ~dGDeV~i~p 93 (98)
T 1vjk_A 84 KDGDVVGVFP 93 (98)
T ss_dssp CTTCEEEEES
T ss_pred CCCCEEEEEC
Confidence 9999998874
No 139
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=80.57 E-value=9.6 Score=29.73 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=36.1
Q ss_pred CCCcEEEEEEeCCEEEEEEEcC--CCCHHHHHHHHHHhcCCC
Q 025281 49 PAPYLRLRIAFGALRYEISVNS--RATFGEVKKVLTGETGLQ 88 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I~v~~--~sTvgdLK~~l~~~TGVp 88 (255)
-.+.+.++|.|.|..+.+.|.- +.|+.+|..++-...|++
T Consensus 11 m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~ 52 (101)
T 1wj6_A 11 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN 52 (101)
T ss_dssp SCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS
T ss_pred cCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC
Confidence 4678999999999999987754 889999999999999997
No 140
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=79.43 E-value=6.3 Score=29.50 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=43.6
Q ss_pred EEEEEeCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIAFGALRYEISVNSR-ATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk~g~~~~~I~v~~~-sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.++|.-+++.+ +++.. .|+.+|-+.| ++++....+...|.....+ .....-|++|.+|-++.
T Consensus 20 ~M~I~vNGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 20 RHMLQLNGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp --CEEETTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred ceEEEECCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 34455577754 45776 8999998876 6888777788888775432 34456799999998874
No 141
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=78.06 E-value=17 Score=26.16 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=39.8
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcC-CC-----C-----CceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETG-LQ-----A-----GDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TG-Vp-----p-----~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|.....++++..+|+++|.+.|...-. +. . ..-.++..|+..+. +.-|++|+.|.++.
T Consensus 16 g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P 84 (89)
T 3po0_A 16 GSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP 84 (89)
T ss_dssp TCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC
Confidence 445677888888999999999987541 11 0 12456667765543 34589999999884
No 142
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=77.56 E-value=7.6 Score=29.51 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=39.4
Q ss_pred CCcEEEEEEeCCEEEEEEEcC--CCCHHHHHHHHHHhcCCCCCceeEEecC
Q 025281 50 APYLRLRIAFGALRYEISVNS--RATFGEVKKVLTGETGLQAGDQVLIYRG 98 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~~I~v~~--~sTvgdLK~~l~~~TGVpp~~QKLiyKG 98 (255)
.+.+.++|.|+|..+.+.|+- ..|+.+|..++-...|++ ...|=|..
T Consensus 4 ~~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~D 52 (87)
T 2bkf_A 4 EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLD 52 (87)
T ss_dssp CCCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEEC
T ss_pred CceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEEc
Confidence 578999999999999988754 889999999999999997 44444544
No 143
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=73.72 E-value=17 Score=31.54 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=51.1
Q ss_pred cEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-ceeEEe---cCee--cCCccchhhcCCCCCcEEEE
Q 025281 52 YLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAG-DQVLIY---RGKE--RENGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 52 ~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~-~QKLiy---KGK~--ldD~~~L~~~GVkdgSkImL 120 (255)
+|.|+|..-..++++.+++.+|+.||=+.|+...||... --=|.| .|.. ++.+.+|...+++.+....|
T Consensus 1 ~i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l 75 (294)
T 1ef1_A 1 TISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLF 75 (294)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEE
T ss_pred CEEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEE
Confidence 467788865567889999999999999999999999653 344555 3432 67788888887766654433
No 144
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=73.46 E-value=2.3 Score=42.61 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=43.3
Q ss_pred eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCee-cCCccchhhc
Q 025281 59 FGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKE-RENGEYLDMC 110 (255)
Q Consensus 59 ~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~-ldD~~~L~~~ 110 (255)
.....+.+.+.++.|+.+|+..|...||||++.|-|++.+.. ++...+...|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 445667888999999999999999999999999999999886 6655555543
No 145
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=72.10 E-value=23 Score=27.86 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=48.7
Q ss_pred CCcEEEEEEe---CCEEEEEEEcCCCCHHHHHHHHHHh--cCCCC------CceeEEec-C---eecCCc----------
Q 025281 50 APYLRLRIAF---GALRYEISVNSRATFGEVKKVLTGE--TGLQA------GDQVLIYR-G---KERENG---------- 104 (255)
Q Consensus 50 ~~~I~V~Vk~---g~~~~~I~v~~~sTvgdLK~~l~~~--TGVpp------~~QKLiyK-G---K~ldD~---------- 104 (255)
..+++++|.. ++..+++.+-...||..+|+.|-.. -|+|. +..-|=|+ | +.|.|.
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 4567777763 3456788888899999999988754 35543 35556553 3 234331
Q ss_pred ---cchhhcCCCCCcEEEEec
Q 025281 105 ---EYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 105 ---~~L~~~GVkdgSkImLv~ 122 (255)
.+|.-|+|.||++|-|+.
T Consensus 89 krLNTL~HY~V~dgatl~l~~ 109 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILSK 109 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEEE
T ss_pred eEecchhhcCCCCCCEEEEEe
Confidence 378999999999998863
No 146
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.57 E-value=18 Score=27.64 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=44.7
Q ss_pred CEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEe--cCeecCCccchhhcCCCCCcEEEEec
Q 025281 61 ALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIY--RGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 61 ~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiy--KGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
..+|-|-. .++.||+......++|+...-+|.. -|-+.+|++++..+. ++..+|++.
T Consensus 20 s~k~GV~A---~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp--~nT~lmvL~ 78 (91)
T 2eel_A 20 SSRRGVMA---SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG--DNTHFMILE 78 (91)
T ss_dssp CCCEEEEE---SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSC--SSEEEEEEE
T ss_pred CeEEeEEc---CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCC--CCCEEEEEc
Confidence 45555543 4699999999999999866666654 588999999988775 888888886
No 147
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=69.89 E-value=25 Score=28.74 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=50.5
Q ss_pred CCcEEEEEEeC-------CEEEEEEEcCCCCHHHHHHHHHHh--cCCCCC------ceeEEe----cCee-cCCc-----
Q 025281 50 APYLRLRIAFG-------ALRYEISVNSRATFGEVKKVLTGE--TGLQAG------DQVLIY----RGKE-RENG----- 104 (255)
Q Consensus 50 ~~~I~V~Vk~g-------~~~~~I~v~~~sTvgdLK~~l~~~--TGVpp~------~QKLiy----KGK~-ldD~----- 104 (255)
..+++|+|... ...++|.|-...||..+|+.|-+. -|+|.. +.-|=+ .|+. |.|.
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence 45677776542 356888999999999999998865 345442 233333 1332 3331
Q ss_pred --------cchhhcCCCCCcEEEEec
Q 025281 105 --------EYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 105 --------~~L~~~GVkdgSkImLv~ 122 (255)
-+|.-|+|.||++|-|+.
T Consensus 102 ~~~~wkrLNTL~HY~V~Dga~l~l~~ 127 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDGATVALVP 127 (138)
T ss_dssp EETTEEECCBHHHHTCCTTCEEEEEE
T ss_pred ccCCceeecchhccCCCCCCEEEEEE
Confidence 289999999999999985
No 148
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=69.11 E-value=3.6 Score=39.97 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=28.4
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCCCceeEE
Q 025281 65 EISVNSRATFGEVKKVLTGETGLQAGDQVLI 95 (255)
Q Consensus 65 ~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi 95 (255)
.+.|.-++|+.+|++.+++.+|+|+++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 4677888999999999999999999999994
No 149
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=68.78 E-value=11 Score=30.54 Aligned_cols=59 Identities=12% Similarity=0.232 Sum_probs=43.5
Q ss_pred EEEEEcC----CCCHHHHHHHHHHhcCCCCC-------ceeEEecCeecCC--ccchhhcCCCCCcEEEEecC
Q 025281 64 YEISVNS----RATFGEVKKVLTGETGLQAG-------DQVLIYRGKEREN--GEYLDMCRVKDRSKVILTED 123 (255)
Q Consensus 64 ~~I~v~~----~sTvgdLK~~l~~~TGVpp~-------~QKLiyKGK~ldD--~~~L~~~GVkdgSkImLv~~ 123 (255)
-.+.|++ .+|+++|=+.|....|-+.+ .+||||--- .+| +.+|+.+||++||-|.++.+
T Consensus 8 gvl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~D-fDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 8 GVIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYD-FEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp EEEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETT-BCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred EEEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCC-ccccccCcHHHcCcCCCcEEEEEcc
Confidence 3466664 47999999989888887542 467776542 344 56899999999999999864
No 150
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=68.57 E-value=8.3 Score=30.09 Aligned_cols=70 Identities=10% Similarity=0.181 Sum_probs=43.3
Q ss_pred CcEEEEEEe--------CC-EEEEEEEcC---CCCHHHHHHHHHHhcCCCCCceeEEec-Ceec------CCcc---chh
Q 025281 51 PYLRLRIAF--------GA-LRYEISVNS---RATFGEVKKVLTGETGLQAGDQVLIYR-GKER------ENGE---YLD 108 (255)
Q Consensus 51 ~~I~V~Vk~--------g~-~~~~I~v~~---~sTvgdLK~~l~~~TGVpp~~QKLiyK-GK~l------dD~~---~L~ 108 (255)
++++|+|++ |+ ..|+|+++. .+||++|-..|.+.. |..+.+|+.. |+.+ =+++ .|.
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 457777775 44 378899994 369999988887664 3334444322 3221 1222 332
Q ss_pred --hcCCCCCcEEEEec
Q 025281 109 --MCRVKDRSKVILTE 122 (255)
Q Consensus 109 --~~GVkdgSkImLv~ 122 (255)
++-|++|..|.++.
T Consensus 88 gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 88 ELDYQLQDQDSILFIS 103 (114)
T ss_dssp TTTCBCCSSEEEEEEE
T ss_pred CcCcCCCCCCEEEEeC
Confidence 36699999998875
No 151
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=64.43 E-value=37 Score=30.63 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=53.5
Q ss_pred CcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCC-CceeEEecC---------eecCCccchhhcCCCCCcEEE
Q 025281 51 PYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQA-GDQVLIYRG---------KERENGEYLDMCRVKDRSKVI 119 (255)
Q Consensus 51 ~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp-~~QKLiyKG---------K~ldD~~~L~~~GVkdgSkIm 119 (255)
..+.++|. .++....+.|++.+|+.||=+.|+...||.. +.--|.|.. ..++.+.++...|+....++.
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 45677777 4678889999999999999999999999964 345665542 125667778888877777777
Q ss_pred Ee
Q 025281 120 LT 121 (255)
Q Consensus 120 Lv 121 (255)
+.
T Consensus 164 fr 165 (371)
T 3ivf_A 164 LR 165 (371)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 152
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=63.93 E-value=28 Score=26.27 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=42.5
Q ss_pred CCcEEEEEEeCCEEEEEEEcCC--CCHHHHHHHHHHhcCCCCCceeEEecC
Q 025281 50 APYLRLRIAFGALRYEISVNSR--ATFGEVKKVLTGETGLQAGDQVLIYRG 98 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~~I~v~~~--sTvgdLK~~l~~~TGVpp~~QKLiyKG 98 (255)
...+.|+.+++.+..-+.++.+ .++.+|..+++.+-.++...--|-|..
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 3578999999999998888744 799999999999999988888888886
No 153
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=63.18 E-value=19 Score=24.60 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=39.9
Q ss_pred EeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 58 AFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 58 k~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.-+++.+++ ...|+.+|.+.+ ++++..-.+...|.....+ .....-|++|.+|.++.
T Consensus 3 ~vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 3 WLNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred EECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 335666654 568999998876 6777777777888765432 23445689999999874
No 154
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=61.97 E-value=39 Score=24.93 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=36.1
Q ss_pred CCEEEEEEEc--CCCCHHHHHHHHHHhcCCCCCceeE--E-ecCee------cCCcc---ch--hhcCCCCCcEEEEec
Q 025281 60 GALRYEISVN--SRATFGEVKKVLTGETGLQAGDQVL--I-YRGKE------RENGE---YL--DMCRVKDRSKVILTE 122 (255)
Q Consensus 60 g~~~~~I~v~--~~sTvgdLK~~l~~~TGVpp~~QKL--i-yKGK~------ldD~~---~L--~~~GVkdgSkImLv~ 122 (255)
|...++++++ ..+|+++|...|.+.-. .....+ + -.|+. .=|.+ .+ .++-|++|+.|.++.
T Consensus 18 g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~--~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 18 KQRVHKIKMDKEDPVTVGDLIDHIVSTMI--NNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp TCCEEEEEECSCSCCBHHHHHHHHHHHTC--SSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred CCcEEEEecCCCCCCcHHHHHHHHHHHCc--hhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 3456778888 67899999999987652 111111 1 11211 11222 22 245689999998874
No 155
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=61.62 E-value=9.4 Score=29.32 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=42.2
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcCC---CCC--------ceeEEecC-eecC-----C-ccchhhcCCCCCcEEEEec
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETGL---QAG--------DQVLIYRG-KERE-----N-GEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TGV---pp~--------~QKLiyKG-K~ld-----D-~~~L~~~GVkdgSkImLv~ 122 (255)
....|+|+++.|+.+|-+.|.+.-.+ .|. ...|++.+ ..++ + +.+|.++|+.+|..|++..
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 34678999999999999999984333 222 34444444 1232 2 3568999999999998863
No 156
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=61.52 E-value=39 Score=29.62 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=51.0
Q ss_pred CCcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-ceeEEe--cCee--cCCccchhhcCCCCCcEE
Q 025281 50 APYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAG-DQVLIY--RGKE--RENGEYLDMCRVKDRSKV 118 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~-~QKLiy--KGK~--ldD~~~L~~~GVkdgSkI 118 (255)
..++.++|..-..++.+.+++.+|+.||=+.|....||... --=|.| +|-. ++.+..|...+++.+...
T Consensus 20 ~~~~~~~V~lldg~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~ 93 (314)
T 1h4r_A 20 PKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPV 93 (314)
T ss_dssp -CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSE
T ss_pred CCeeEEEEEeCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCE
Confidence 46788888843337889999999999999999999999753 334444 4432 777888888887666544
No 157
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=60.02 E-value=16 Score=27.58 Aligned_cols=43 Identities=21% Similarity=0.084 Sum_probs=26.9
Q ss_pred hhhHhHHHHHHHHHHHHccCccccchhhHHHHHHHHHHHHHHHHHhHh
Q 025281 176 EVQITTLIEMLMRQAIKLDSISAEGDASAQKKLQGKRVQKCVETLDLL 223 (255)
Q Consensus 176 e~e~~~LsE~LM~qLLKLD~I~aeGd~R~qRK~~VkrVQ~~le~LD~~ 223 (255)
|.+|..+.+-|.+.|-++=+. .|+ +||.+++.|+..++..+.+
T Consensus 7 E~df~~~~~~i~~~l~~~~~~--~ge---~Rk~~i~~ie~~ldEA~el 49 (97)
T 3onj_A 7 ESDFKTTLEQAKASLAEAPSQ--PLS---QRNTTLKHVEQQQDELFDL 49 (97)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc--ChH---HHHHHHHHHHHHHHHHHHH
Confidence 556677777777666555322 233 7777777777777666554
No 158
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=59.11 E-value=20 Score=27.93 Aligned_cols=74 Identities=8% Similarity=0.145 Sum_probs=54.6
Q ss_pred CCCcEEEEEEeCC-EEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEE---ecCee--cCCccchhhcCCCCCcEEEEec
Q 025281 49 PAPYLRLRIAFGA-LRYEISVNSRATFGEVKKVLTGETGLQAGDQVLI---YRGKE--RENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 49 ~~~~I~V~Vk~g~-~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLi---yKGK~--ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+...|..+|-.-. ....+.++..+|+.+++..+++.++...+.+.|. |.|-. +++++.--.-.+.-+.+|++..
T Consensus 6 ~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~ 85 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYR 85 (104)
T ss_dssp CSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEE
T ss_pred CCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEee
Confidence 3456777777443 3456899999999999999999999987788886 66653 5666555555666678888864
No 159
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=58.91 E-value=21 Score=24.47 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=40.9
Q ss_pred EEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 57 IAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 57 Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|.-+++.+ +++...|+.+|.+.| ++++..-.+...|...... .....-|++|.+|.++.
T Consensus 3 i~vNg~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 3 ILFNDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EEESSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred EEECCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 33355544 557778999998876 6777777777888765422 23445689999998874
No 160
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=58.15 E-value=31 Score=24.03 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=34.3
Q ss_pred EEEcCCCCHHHHHHHHHHhcCCCC--CceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 66 ISVNSRATFGEVKKVLTGETGLQA--GDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 66 I~v~~~sTvgdLK~~l~~~TGVpp--~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+++ ..+|+++|.+.|...-++.. ..-.+...|....+ .+.-|++|++|.++.
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLP 69 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEEC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEEC
Confidence 566 56899999999986544332 33445556655322 245689999999874
No 161
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=57.37 E-value=17 Score=27.73 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=18.5
Q ss_pred hhhHhHHHHHHHHHHHHccCccccchhhHHHHHHHHHHHHHHHHHh
Q 025281 176 EVQITTLIEMLMRQAIKLDSISAEGDASAQKKLQGKRVQKCVETLD 221 (255)
Q Consensus 176 e~e~~~LsE~LM~qLLKLD~I~aeGd~R~qRK~~VkrVQ~~le~LD 221 (255)
|.+|..|...|.+.|-.+-+. .| .+||..+++|+..|+..+
T Consensus 11 E~df~~l~~~i~~kl~~i~~~--~g---eerk~~i~~ie~~l~EA~ 51 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRL--PP---DEKKQMVANVEKQLEEAR 51 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CT---TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc--Cc---HHHHHHHHHHHHHHHHHH
Confidence 445555555555544443322 22 244444555544444433
No 162
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.19 E-value=36 Score=33.27 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=52.2
Q ss_pred CcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-ceeEEecC---e--ecCCccchhhcCCCCCcEEEE
Q 025281 51 PYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAG-DQVLIYRG---K--ERENGEYLDMCRVKDRSKVIL 120 (255)
Q Consensus 51 ~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~-~QKLiyKG---K--~ldD~~~L~~~GVkdgSkImL 120 (255)
.+|.|+|..-..++.|.|++.+|+.+|=..|+...||... -.=|.|.. . .++.+.+|...+++.+..+.|
T Consensus 3 k~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L 78 (575)
T 2i1j_A 3 KSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQF 78 (575)
T ss_dssp CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEE
T ss_pred ceEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEE
Confidence 4688888854447889999999999999999999999643 45555532 2 367778888887776655443
No 163
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=54.59 E-value=15 Score=26.60 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=42.9
Q ss_pred EEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCC-CCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 57 IAFGALRYEISVNSRATFGEVKKVLTGETGLQ-AGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 57 Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVp-p~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|.-+|+.+++..+...|+.+|-+. .|++ ++.--+.+.|.... .......-|++|.+|-++-
T Consensus 3 I~vNGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVp-r~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 3 LTVNGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLE-REAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp EEETTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECC-TTHHHHCEECSSBCEEECC
T ss_pred EEECCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEEe
Confidence 344567555432167899998765 4788 88888889998754 3346667789999999873
No 164
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=54.47 E-value=27 Score=27.25 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=39.0
Q ss_pred CcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCee
Q 025281 51 PYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKE 100 (255)
Q Consensus 51 ~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ 100 (255)
..++|+.-|+|++.-|.|+-.-+|.||...+....|-+ .-|.|-..+
T Consensus 7 ~dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~n~E 53 (103)
T 2cu1_A 7 GDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYTNNE 53 (103)
T ss_dssp CEEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEECSSS
T ss_pred CcEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEecce
Confidence 45777778999999999999999999999999999974 445666443
No 165
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=54.31 E-value=29 Score=24.71 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=42.8
Q ss_pred EEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 57 IAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 57 Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|.-+|+.+++ ...|+.+|-+. .|++++.--+.+.|.... .......-|++|.+|-++.
T Consensus 3 I~vNG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVp-r~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 3 VTINGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVP-RGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp EEETTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEEC-HHHHTTCBCCTTCEEEEEC
T ss_pred EEECCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEEc
Confidence 3345676665 45899998765 588988888888987754 3346677899999999984
No 166
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=53.71 E-value=27 Score=24.31 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=36.3
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcC-----CCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETG-----LQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TG-----Vpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
...+++ +...|+.+|.+.|...-. ++...-.+...|..... ..-|++|++|.++.
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFP 76 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEEC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeC
Confidence 345555 567899999999874421 22333456777766542 44689999999874
No 167
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=52.83 E-value=70 Score=25.28 Aligned_cols=73 Identities=21% Similarity=0.205 Sum_probs=49.7
Q ss_pred CCcEEEEEEe----CCEEEEEEEcCCCCHHHHHHHHHHh--cCCCCC------ceeEEec-Ce---e-cCCc--------
Q 025281 50 APYLRLRIAF----GALRYEISVNSRATFGEVKKVLTGE--TGLQAG------DQVLIYR-GK---E-RENG-------- 104 (255)
Q Consensus 50 ~~~I~V~Vk~----g~~~~~I~v~~~sTvgdLK~~l~~~--TGVpp~------~QKLiyK-GK---~-ldD~-------- 104 (255)
..+++++|.+ +...+++.+-...||..+|+.|-.. -|+|.. ..-|=|+ |. . |.|.
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence 4567777764 2345778888899999999988654 355433 4556553 42 1 3331
Q ss_pred -----cchhhcCCCCCcEEEEec
Q 025281 105 -----EYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 105 -----~~L~~~GVkdgSkImLv~ 122 (255)
.+|..|+|.||++|-|+.
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~ 113 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVS 113 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEE
T ss_pred cceEeccccccCCCCCCEEEEEe
Confidence 378999999999999874
No 168
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=52.48 E-value=12 Score=27.44 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=31.0
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcCCC-----CCceeEEecC
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETGLQ-----AGDQVLIYRG 98 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TGVp-----p~~QKLiyKG 98 (255)
..+.|.||++.++.+|..+|....++. ....||=||.
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 357899999999999999999999986 3556777776
No 169
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=51.32 E-value=55 Score=26.34 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=48.9
Q ss_pred CCcEEEEEEe---C-------CEEEEEEEcCCCCHHHHHHHHHHh----cCCCCC----ceeEEe-cCe---ecCC----
Q 025281 50 APYLRLRIAF---G-------ALRYEISVNSRATFGEVKKVLTGE----TGLQAG----DQVLIY-RGK---EREN---- 103 (255)
Q Consensus 50 ~~~I~V~Vk~---g-------~~~~~I~v~~~sTvgdLK~~l~~~----TGVpp~----~QKLiy-KGK---~ldD---- 103 (255)
..+++++|.. . ...+++.+-...||..+|+.|-.. .|+|.. ..-|=| .|. .|.|
T Consensus 17 y~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~t 96 (126)
T 3kuz_A 17 QGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSS 96 (126)
T ss_dssp CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTT
T ss_pred eEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCc
Confidence 4577777776 1 356888888899999999987644 377653 344433 232 1211
Q ss_pred ----------ccchhhcCCCCCcEEEEec
Q 025281 104 ----------GEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 104 ----------~~~L~~~GVkdgSkImLv~ 122 (255)
--+|.-|+|.||+.|-|+.
T Consensus 97 S~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 97 SVILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CCBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred ceEecCCeeEeccccccCCCCCCEEEEee
Confidence 1367789999999998874
No 170
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=48.74 E-value=7.4 Score=27.79 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=36.3
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 65 EISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 65 ~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+++++..+|+.+|.+.| ++++....+...|+..+.+ .-|++|++|-++.
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 44667778999998775 5777777788888876543 5688998887663
No 171
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=46.97 E-value=73 Score=24.07 Aligned_cols=68 Identities=7% Similarity=0.007 Sum_probs=49.3
Q ss_pred CCcEEEEEEeC--C--EEEEEEEcCCCCHHHHHHHHHH---hcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 50 APYLRLRIAFG--A--LRYEISVNSRATFGEVKKVLTG---ETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 50 ~~~I~V~Vk~g--~--~~~~I~v~~~sTvgdLK~~l~~---~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
-.+|.|.|.|. . ....++++..+|+.++=+.+.- .+.|.....++...|+..+ .+.-+++|..|-++.
T Consensus 10 ~~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 10 LNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred cceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 45788999874 2 3445788999999998877642 3455555678888888766 344589999999985
No 172
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=46.70 E-value=1.1e+02 Score=24.53 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=47.8
Q ss_pred cEEEEEEe---CCEEEEEEEcCCCCHHHHHHHHHHh--cCCCC------CceeEEec-Ce---e-cCCc-----------
Q 025281 52 YLRLRIAF---GALRYEISVNSRATFGEVKKVLTGE--TGLQA------GDQVLIYR-GK---E-RENG----------- 104 (255)
Q Consensus 52 ~I~V~Vk~---g~~~~~I~v~~~sTvgdLK~~l~~~--TGVpp------~~QKLiyK-GK---~-ldD~----------- 104 (255)
+++++|.+ ++..+++.+-...||..+|+.|-.. -|+|. ++.-|=|+ |. . |.|.
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 44555542 3455777777889999999988764 34543 45666653 32 2 3331
Q ss_pred --cchhhcCCCCCcEEEEec
Q 025281 105 --EYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 105 --~~L~~~GVkdgSkImLv~ 122 (255)
.+|.-|+|.||++|-|+.
T Consensus 84 rLNTL~HY~V~dgatv~l~~ 103 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSL 103 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEE
T ss_pred EeccccccCCCCCCEEEEEE
Confidence 478999999999999984
No 173
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=45.05 E-value=33 Score=23.69 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=38.4
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCce--eEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 60 GALRYEISVNSRATFGEVKKVLTGETGLQAGDQ--VLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 60 g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~Q--KLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
|....+++++..+|+.+|.+.|...-. ..... .+...|+..+.+ .-|++|++|.++.
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~p 72 (77)
T 2q5w_D 14 QKAQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIP 72 (77)
T ss_dssp TCSEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEEC
Confidence 333456777788899999999876521 00223 577788765533 4679999998874
No 174
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=44.47 E-value=56 Score=25.09 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=52.1
Q ss_pred CCcEEEEEEe-CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCce-eEE------ecCeecCCccc----hhhcCCCCCcE
Q 025281 50 APYLRLRIAF-GALRYEISVNSRATFGEVKKVLTGETGLQAGDQ-VLI------YRGKERENGEY----LDMCRVKDRSK 117 (255)
Q Consensus 50 ~~~I~V~Vk~-g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~Q-KLi------yKGK~ldD~~~----L~~~GVkdgSk 117 (255)
...+.|+|-. .+....|.|++..|.+|+-+.|++..++..+.- -|+ +--+.++|.+. |.+-++....+
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr 86 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSR 86 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCE
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcE
Confidence 3456667664 467789999999999999999999999875432 222 12244677654 45556666778
Q ss_pred EEEecCC
Q 025281 118 VILTEDP 124 (255)
Q Consensus 118 ImLv~~p 124 (255)
++....+
T Consensus 87 ~~F~kr~ 93 (100)
T 1wgr_A 87 FVFRKNF 93 (100)
T ss_dssp EEECSCC
T ss_pred EEEecch
Confidence 8776643
No 175
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=44.01 E-value=49 Score=25.10 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025281 205 QKKLQGKRVQKCVETLD 221 (255)
Q Consensus 205 qRK~~VkrVQ~~le~LD 221 (255)
+||..++.|+..|+..+
T Consensus 46 ~rk~~i~~ie~~ldEA~ 62 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEAN 62 (102)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555544444433
No 176
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=41.40 E-value=99 Score=23.44 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=48.7
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 64 YEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 64 ~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
..-+++-..+++.||+.|+...|+.-..=.+...+..|+++.+|-+-+|+-.-.|-+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 3446677789999999999999999998888888888999999999999866555553
No 177
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=41.08 E-value=1.1e+02 Score=22.96 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=43.6
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcCCCCCc-eeEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETGLQAGD-QVLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~-QKLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
.+|.+.|++.+|=-++|+.++.+.||.+.. .-|+++||.+.... -.|-+++-|=..|
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~---~~G~~~~~KKAiV 85 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ---RIGRRSDWKKAYV 85 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSS---SCCBCCCEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCC---ccccCCCcEEEEE
Confidence 579999999999999999999999999986 45678898764332 2455666554444
No 178
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=40.16 E-value=1.3e+02 Score=23.24 Aligned_cols=64 Identities=8% Similarity=0.132 Sum_probs=45.8
Q ss_pred EEEEE--eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC--ceeEE--ecCeecCCccchhhcCCCCCcEEEEec
Q 025281 54 RLRIA--FGALRYEISVNSRATFGEVKKVLTGETGLQAG--DQVLI--YRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 54 ~V~Vk--~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~--~QKLi--yKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
-++|. |...+|=|- + .++.||+.+....++|+.. .-+|. .-|.+.+|++++..+. ++..+|++.
T Consensus 20 PfkV~~~~~r~k~GV~--A-~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp--~nT~lmvL~ 89 (100)
T 1f2r_I 20 PCLLRRNHSRDQHGVA--A-SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP--SNTKFVALA 89 (100)
T ss_dssp EEEEEETTEEEEEEEE--E-SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC--SCCEEEEEC
T ss_pred CEEEeeCCCccEEeEE--c-CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC--CCCEEEEEc
Confidence 34444 343344443 3 4699999999999999763 35553 4688999999987765 888999886
No 179
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=39.58 E-value=25 Score=29.02 Aligned_cols=49 Identities=8% Similarity=0.171 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHhcCCCC--CceeEE--ecCeecCCccchhhcCCCCCcEEEEec
Q 025281 72 ATFGEVKKVLTGETGLQA--GDQVLI--YRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 72 sTvgdLK~~l~~~TGVpp--~~QKLi--yKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
.++.||+......++|+. ..-+|. .-|-+.+|++++..+. ++..+|++.
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp--~nT~LmvL~ 134 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLP--SNTKFVALA 134 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSC--SSCBEEEEC
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCC--CCCEEEEEC
Confidence 479999999999999976 355554 4588999999988775 889999886
No 180
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=36.70 E-value=35 Score=30.06 Aligned_cols=73 Identities=10% Similarity=-0.073 Sum_probs=50.0
Q ss_pred CCCcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-ceeEEec---Ce--ecCCccchhhcCCCCCcEEEEe
Q 025281 49 PAPYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQAG-DQVLIYR---GK--ERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 49 ~~~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~-~QKLiyK---GK--~ldD~~~L~~~GVkdgSkImLv 121 (255)
....|.++|. .++....+.|++.+|+.||=..|....||... -.=|.|. |- .++.+.+|.........++.+.
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 4457888888 46788999999999999999999999999653 2455543 32 2677777777654444555553
No 181
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=36.64 E-value=62 Score=24.34 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=35.6
Q ss_pred CCCcEEEEEEeCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCCc-eeEEec
Q 025281 49 PAPYLRLRIAFGALRYEISVNSR-ATFGEVKKVLTGETGLQAGD-QVLIYR 97 (255)
Q Consensus 49 ~~~~I~V~Vk~g~~~~~I~v~~~-sTvgdLK~~l~~~TGVpp~~-QKLiyK 97 (255)
.+..|..+-+.......|.|+.. -++.|||..|.+..++-..+ .-.||.
T Consensus 5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~n 55 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITN 55 (86)
T ss_dssp TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEE
T ss_pred ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeC
Confidence 34567777777777777999954 59999999999998885433 333454
No 182
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=35.76 E-value=87 Score=24.89 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=51.9
Q ss_pred CCcEEEEEEeCCEEE-EEEEcCCCCHHHHHHHHHHhcCCCCC------ceeEE---ecCee--cCCccchhhcCCCCCcE
Q 025281 50 APYLRLRIAFGALRY-EISVNSRATFGEVKKVLTGETGLQAG------DQVLI---YRGKE--RENGEYLDMCRVKDRSK 117 (255)
Q Consensus 50 ~~~I~V~Vk~g~~~~-~I~v~~~sTvgdLK~~l~~~TGVpp~------~QKLi---yKGK~--ldD~~~L~~~GVkdgSk 117 (255)
...|..+|-.-..+| .|.++..+|+.+++..+++.++...+ .+.|. |.|-. +++++.--.-.+.-+.+
T Consensus 7 ~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgR 86 (120)
T 2dhz_A 7 GDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSH 86 (120)
T ss_dssp CCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEE
T ss_pred CCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccce
Confidence 346778887544444 58999999999999999999998554 77776 56653 55554444444555678
Q ss_pred EEEec
Q 025281 118 VILTE 122 (255)
Q Consensus 118 ImLv~ 122 (255)
|++..
T Consensus 87 Lfvc~ 91 (120)
T 2dhz_A 87 LFACT 91 (120)
T ss_dssp EEEEC
T ss_pred EEEee
Confidence 88864
No 183
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=35.36 E-value=1.1e+02 Score=30.78 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=50.2
Q ss_pred CCcEEEEEEe-------CCEEEEEEEcCCCCHHHHHHHHHHh--cCCCC------CceeEEec----Cee-cCCc-----
Q 025281 50 APYLRLRIAF-------GALRYEISVNSRATFGEVKKVLTGE--TGLQA------GDQVLIYR----GKE-RENG----- 104 (255)
Q Consensus 50 ~~~I~V~Vk~-------g~~~~~I~v~~~sTvgdLK~~l~~~--TGVpp------~~QKLiyK----GK~-ldD~----- 104 (255)
..+++++|.. +...++|.|-...||..+|+.|-.. -|+|. ++.-|=|+ |+. |.|.
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 5677787764 1345778888899999999988743 35544 34445442 332 3332
Q ss_pred --------cchhhcCCCCCcEEEEec
Q 025281 105 --------EYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 105 --------~~L~~~GVkdgSkImLv~ 122 (255)
.+|..|+|+||+.|-|+.
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p 360 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVP 360 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEE
T ss_pred ecCcceeecchhhcCCCCCcEEEEEe
Confidence 389999999999999985
No 184
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=35.27 E-value=1.1e+02 Score=21.34 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=36.0
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC------C-----CCCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 65 EISVNSRATFGEVKKVLTGETG------L-----QAGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 65 ~I~v~~~sTvgdLK~~l~~~TG------V-----pp~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
+++++...|+.+|.+.|..... + ......+...|....... -...-|++|++|.++.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeC
Confidence 3456667899999999876531 1 113445677776543211 1234589999999874
No 185
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=34.33 E-value=1.4e+02 Score=21.95 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=39.5
Q ss_pred cEEEEEEe--------CCEEEEEEEcCCCCHHHHHHHHHHhc-CCCCC---------ce-------eEEecCeecCCccc
Q 025281 52 YLRLRIAF--------GALRYEISVNSRATFGEVKKVLTGET-GLQAG---------DQ-------VLIYRGKERENGEY 106 (255)
Q Consensus 52 ~I~V~Vk~--------g~~~~~I~v~~~sTvgdLK~~l~~~T-GVpp~---------~Q-------KLiyKGK~ldD~~~ 106 (255)
+++|+|++ |...+++ + ..|+.+|.+.|.... ++... .. .+...|.......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l--~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPL--S-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEE--E-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEE--e-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 45677775 3234444 4 589999999987663 22111 12 5666776542111
Q ss_pred hhhcCCCCCcEEEEec
Q 025281 107 LDMCRVKDRSKVILTE 122 (255)
Q Consensus 107 L~~~GVkdgSkImLv~ 122 (255)
-..+-|++|++|.++.
T Consensus 79 ~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 79 GLETLLKDSDEIGILP 94 (99)
T ss_dssp STTSCCCTTEEEEEEC
T ss_pred CCCCCCCCCCEEEEEC
Confidence 1234589999998874
No 186
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=32.21 E-value=74 Score=24.85 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHcc--C--------ccccc-hhhHHHHHHHHHHHHHHHH
Q 025281 180 TTLIEMLMRQAIKLD--S--------ISAEG-DASAQKKLQGKRVQKCVET 219 (255)
Q Consensus 180 ~~LsE~LM~qLLKLD--~--------I~aeG-d~R~qRK~~VkrVQ~~le~ 219 (255)
++-+|.|+|.-..++ + |...| +.-.+=-.++++||++|=.
T Consensus 48 LRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ILYa 98 (106)
T 4e61_A 48 LRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYA 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHHhc
Confidence 566899999976652 2 22222 1111222578999988743
No 187
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=31.02 E-value=58 Score=31.46 Aligned_cols=70 Identities=11% Similarity=0.198 Sum_probs=52.2
Q ss_pred CcEEEEEEe---CCEEEE----EEEcCCCCHHHHHHHHHHhcCCCCCceeEEec----Cee--cC-Cccchhhc--CCCC
Q 025281 51 PYLRLRIAF---GALRYE----ISVNSRATFGEVKKVLTGETGLQAGDQVLIYR----GKE--RE-NGEYLDMC--RVKD 114 (255)
Q Consensus 51 ~~I~V~Vk~---g~~~~~----I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyK----GK~--ld-D~~~L~~~--GVkd 114 (255)
..|-|=+|| ..++.. +.|+.++++.+|-..|.+..|+|++.--.+|. +.. ++ .+.++..+ ++.+
T Consensus 129 ~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~ 208 (530)
T 2ylm_A 129 HDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMD 208 (530)
T ss_dssp TEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCT
T ss_pred CcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccC
Confidence 456666664 123332 67899999999999999999999987666654 332 56 57899999 9999
Q ss_pred CcEEEE
Q 025281 115 RSKVIL 120 (255)
Q Consensus 115 gSkImL 120 (255)
|.-|..
T Consensus 209 GdII~f 214 (530)
T 2ylm_A 209 GDIIVF 214 (530)
T ss_dssp TEEEEE
T ss_pred CCEEEE
Confidence 987654
No 188
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=30.08 E-value=1.4e+02 Score=22.89 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=39.3
Q ss_pred CcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCee
Q 025281 51 PYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKE 100 (255)
Q Consensus 51 ~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ 100 (255)
..++|+.-|.|++.-|.++-.-.|.||.+.+....|-+ .-|.|-..+
T Consensus 3 ~dvRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afGq~---ldl~y~nnE 49 (94)
T 2jrh_A 3 SDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQP---LDLHYMNNE 49 (94)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHCSS---EEEEEECSS
T ss_pred CceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCe---eeeEEecce
Confidence 35778888999999999999999999999999999965 446666554
No 189
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=28.63 E-value=2.4e+02 Score=28.23 Aligned_cols=73 Identities=22% Similarity=0.242 Sum_probs=50.3
Q ss_pred CCcEEEEEEe----CCEEEEEEEcCCCCHHHHHHHHHHh--cCCCC------CceeEEec----Cee-cCCc--------
Q 025281 50 APYLRLRIAF----GALRYEISVNSRATFGEVKKVLTGE--TGLQA------GDQVLIYR----GKE-RENG-------- 104 (255)
Q Consensus 50 ~~~I~V~Vk~----g~~~~~I~v~~~sTvgdLK~~l~~~--TGVpp------~~QKLiyK----GK~-ldD~-------- 104 (255)
..+++++|.. +...++|.|-...||..+|+.|-.. -|+|- ++.-|=|+ |+. |.|.
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccC
Confidence 5677888763 2456788888999999999988764 34443 34555442 332 3321
Q ss_pred -----cchhhcCCCCCcEEEEec
Q 025281 105 -----EYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 105 -----~~L~~~GVkdgSkImLv~ 122 (255)
.+|..|+|+||++|-|+.
T Consensus 311 ~wkrLNTL~HY~V~Dga~v~L~p 333 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDGSLVALVP 333 (627)
T ss_dssp TEEECCBTTTTTCCTTCEEEEEE
T ss_pred ceeEecchhhcCCCCCceEEEEe
Confidence 378999999999999985
No 190
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=28.44 E-value=96 Score=24.13 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=28.3
Q ss_pred CcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcC
Q 025281 51 PYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETG 86 (255)
Q Consensus 51 ~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TG 86 (255)
..+.|.+- ..|...++.++.++|+.++|+.|.+...
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~ 54 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFKEAR 54 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGG
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHH
Confidence 45666655 4558889999999999999998887643
No 191
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=27.80 E-value=44 Score=29.56 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=28.8
Q ss_pred CCCcEEEEEE-eCCEEEEEEEcC--CCCHHHHHHHHHHhcCCCCC
Q 025281 49 PAPYLRLRIA-FGALRYEISVNS--RATFGEVKKVLTGETGLQAG 90 (255)
Q Consensus 49 ~~~~I~V~Vk-~g~~~~~I~v~~--~sTvgdLK~~l~~~TGVpp~ 90 (255)
+.|.++|+|- .+|..+.|+|++ ++|+++|- +..|++..
T Consensus 2 ~~~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~~ 42 (322)
T 4dxa_B 2 SPEFEKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQE 42 (322)
T ss_dssp ---CCEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCTT
T ss_pred CCCceEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCcc
Confidence 3578888888 478889999999 99999993 45788764
No 192
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=27.07 E-value=1.5e+02 Score=22.89 Aligned_cols=46 Identities=9% Similarity=0.113 Sum_probs=38.0
Q ss_pred CcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCe
Q 025281 51 PYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGK 99 (255)
Q Consensus 51 ~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK 99 (255)
..++|+.-|.|++..|.++---.|.||.+.+....|-+ .-|.|-..
T Consensus 19 ~dvRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afGq~---ldl~y~nn 64 (100)
T 2npt_B 19 NDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYTNN 64 (100)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHTSC---EEEEEEET
T ss_pred cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCe---eeeEEecc
Confidence 35788888999999999999999999999999999965 33555533
No 193
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=25.33 E-value=27 Score=27.00 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=33.9
Q ss_pred EEEEEEEcC----CCCHHHHHHHHHHhcCCCCCceeEEec-C--e------ecCCccch---h--hcCCCCCcEEEEec
Q 025281 62 LRYEISVNS----RATFGEVKKVLTGETGLQAGDQVLIYR-G--K------ERENGEYL---D--MCRVKDRSKVILTE 122 (255)
Q Consensus 62 ~~~~I~v~~----~sTvgdLK~~l~~~TGVpp~~QKLiyK-G--K------~ldD~~~L---~--~~GVkdgSkImLv~ 122 (255)
..++++++. .+|+++|=..|.+.. +..+-+|+.. | . .+=++..+ . +|-|++|+.|.++.
T Consensus 21 ~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 21 KQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp SCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred CeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 467888884 358999777776654 3334444423 3 1 12222322 2 35589999888764
No 194
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=25.19 E-value=1e+02 Score=29.35 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=37.9
Q ss_pred CcEEEEEE-eCCEEEEEEEcCCCCHHHHHHHHHHhcCCCC--CceeEEec
Q 025281 51 PYLRLRIA-FGALRYEISVNSRATFGEVKKVLTGETGLQA--GDQVLIYR 97 (255)
Q Consensus 51 ~~I~V~Vk-~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp--~~QKLiyK 97 (255)
..+.++|. .+|..+.+.|++.+|+.||-+.|+...||.. +.--|.+.
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 45777777 4678899999999999999999999999974 34556554
No 195
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=24.52 E-value=1.9e+02 Score=22.64 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=39.2
Q ss_pred CcEEEEEEeCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCceeEEecCee
Q 025281 51 PYLRLRIAFGALRYEISVNSRATFGEVKKVLTGETGLQAGDQVLIYRGKE 100 (255)
Q Consensus 51 ~~I~V~Vk~g~~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~QKLiyKGK~ 100 (255)
..++|+.-|.|++.-|.++-.-.|.||.+.+....|-+- -|.|-..+
T Consensus 30 ~dvRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afGq~l---dl~y~nnE 76 (111)
T 2c60_A 30 SDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPL---DLHYMNNE 76 (111)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHSSCC---EEEEECSS
T ss_pred cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCee---eeEEecce
Confidence 467888889999999999999999999999999999763 35565443
No 196
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=24.21 E-value=1.2e+02 Score=22.77 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=42.6
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHhcCCCCCce-eEEecCeecCCccchhhcCCCCCcEEEEe
Q 025281 62 LRYEISVNSRATFGEVKKVLTGETGLQAGDQ-VLIYRGKERENGEYLDMCRVKDRSKVILT 121 (255)
Q Consensus 62 ~~~~I~v~~~sTvgdLK~~l~~~TGVpp~~Q-KLiyKGK~ldD~~~L~~~GVkdgSkImLv 121 (255)
.+|.+.|++.+|=-++|+.++.+.||.+..- -|+++||.+.... -.|-+++-|-..|
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~---~~G~~~~~KKA~V 79 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGR---YLGKRPDRKKAIV 79 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSS---CEEECCCEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeecc---ccccCCCceEEEE
Confidence 5789999999999999999999999998764 4578888754332 2455566554433
No 197
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=21.76 E-value=2.2e+02 Score=20.18 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=34.5
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC-C-----C-------CCceeEEecCeecCCccchhhcCCCCCcEEEEec
Q 025281 65 EISVNSRATFGEVKKVLTGETG-L-----Q-------AGDQVLIYRGKERENGEYLDMCRVKDRSKVILTE 122 (255)
Q Consensus 65 ~I~v~~~sTvgdLK~~l~~~TG-V-----p-------p~~QKLiyKGK~ldD~~~L~~~GVkdgSkImLv~ 122 (255)
++++ ..+|+++|...|...-. + . .....++..|....+...+ +.-|++|+.|.++.
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILP 88 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEE
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEEC
Confidence 4664 45799999999987641 0 0 0124555666654432222 34589999999885
No 198
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=20.97 E-value=95 Score=22.86 Aligned_cols=29 Identities=3% Similarity=-0.035 Sum_probs=22.2
Q ss_pred CCCcEEEEEE-eCCEEEEEEEcCCCCHHHH
Q 025281 49 PAPYLRLRIA-FGALRYEISVNSRATFGEV 77 (255)
Q Consensus 49 ~~~~I~V~Vk-~g~~~~~I~v~~~sTvgdL 77 (255)
+..+++|++. ..+..|.|++++..|+-+.
T Consensus 3 ~~~m~~V~~~~~~g~~~~v~~~~g~tLL~a 32 (108)
T 2bt6_A 3 SGDKITVHFINRDGETLTTKGKIGDSLLDV 32 (108)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTCBHHHH
T ss_pred CCceEEEEEECCCCCEEEEEECCCChHHHH
Confidence 3467888887 5678899999999998764
No 199
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=20.58 E-value=2.4e+02 Score=22.19 Aligned_cols=49 Identities=12% Similarity=-0.017 Sum_probs=34.7
Q ss_pred CCcEEEEEEeC------CEEEEEEEcC-----------CCCHHHHHHHHHHhc-CCCCCceeEEecC
Q 025281 50 APYLRLRIAFG------ALRYEISVNS-----------RATFGEVKKVLTGET-GLQAGDQVLIYRG 98 (255)
Q Consensus 50 ~~~I~V~Vk~g------~~~~~I~v~~-----------~sTvgdLK~~l~~~T-GVpp~~QKLiyKG 98 (255)
+.++.|++-+. .+.+-+.++. ..|+..|+.++..+. ++......|.|+.
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkD 84 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRA 84 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEEC
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEEC
Confidence 34566666664 4555566652 249999999999999 7777778888986
Done!