Query 025282
Match_columns 255
No_of_seqs 244 out of 1742
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 07:13:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 7.5E-24 2.6E-28 182.8 18.6 181 48-245 25-236 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 1.5E-24 5E-29 187.8 13.1 180 48-245 27-212 (451)
3 2gfp_A EMRD, multidrug resista 99.9 4.6E-23 1.6E-27 174.7 11.2 159 88-246 22-181 (375)
4 4gc0_A D-xylose-proton symport 99.9 1.3E-22 4.4E-27 177.7 13.3 181 51-249 14-229 (491)
5 4aps_A DI-OR tripeptide H+ sym 99.9 1.5E-21 5.1E-26 171.0 15.7 152 90-241 38-198 (491)
6 2xut_A Proton/peptide symporte 99.8 9E-20 3.1E-24 161.0 17.9 149 90-238 37-197 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.7 7.7E-17 2.6E-21 139.2 11.3 149 91-239 278-433 (451)
8 2cfq_A Lactose permease; trans 99.6 5.6E-15 1.9E-19 127.0 13.6 146 100-245 258-405 (417)
9 2cfq_A Lactose permease; trans 99.6 4.1E-16 1.4E-20 134.1 1.9 144 91-234 33-182 (417)
10 3o7q_A L-fucose-proton symport 99.6 2.7E-14 9.1E-19 122.9 12.9 137 92-231 286-424 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.5 2.5E-14 8.4E-19 125.1 10.6 154 91-244 309-476 (491)
12 4gc0_A D-xylose-proton symport 99.5 2.1E-14 7.3E-19 125.4 6.6 156 90-245 301-468 (491)
13 2gfp_A EMRD, multidrug resista 99.3 4.3E-12 1.5E-16 107.0 7.6 133 91-226 225-363 (375)
14 2xut_A Proton/peptide symporte 99.0 3.6E-10 1.2E-14 99.4 8.2 141 102-242 336-505 (524)
15 2g9p_A Antimicrobial peptide l 64.9 2.3 8E-05 19.5 0.8 14 120-133 2-15 (26)
16 2dw3_A Intrinsic membrane prot 35.6 78 0.0027 19.5 4.7 30 217-246 31-60 (77)
17 4dve_A Biotin transporter BIOY 34.6 84 0.0029 23.4 5.5 22 109-130 101-122 (198)
18 2nrg_A Intrinsic membrane prot 21.3 1.6E+02 0.0054 18.3 4.8 31 216-246 31-61 (82)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.92 E-value=7.5e-24 Score=182.78 Aligned_cols=181 Identities=18% Similarity=0.187 Sum_probs=153.9
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCCCCCCcccccccccCCcchhHHHHHHHHHHHHhHhhHHHhhhcc
Q 025282 48 GRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS 127 (255)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 127 (255)
++.+..+++.++...++...... .+|.+++++|++..+.+++.+++.++..+++++.|+++||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr 87 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDI-----------------LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK 87 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH-----------------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455555555666555554443 4478999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHhhhhhHhhhhHhhhhhcCcccchhHHHHHHHhhhhhhhh
Q 025282 128 VNPFRLIGVGLTVWTLAVVGC---GFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYA 204 (255)
Q Consensus 128 ~G~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 204 (255)
+|||++++++.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..
T Consensus 88 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 167 (438)
T 3o7q_A 88 LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI 167 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 88899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhc-cc-h-------------------------hHHHHHHHHHHHHHHHHHHHHh-ccCccc
Q 025282 205 IGYVYGGWVG-HY-N-------------------------WRYAFWGEAILMFPFAVLGFVM-KPLQLK 245 (255)
Q Consensus 205 ~g~~~~~~l~-~~-~-------------------------w~~~f~~~~~~~~~~~~~~~~~-~p~~~~ 245 (255)
++|.+++.+. .. + ||+.|++.+++.++..++.++. .||+++
T Consensus 168 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 168 IAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 9999999876 32 2 9999988887766666555443 354433
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.92 E-value=1.5e-24 Score=187.82 Aligned_cols=180 Identities=15% Similarity=0.089 Sum_probs=160.1
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCCCCCCcccccccccCCcchhHHHHHHHHHHHHhHhhHHHhhhcc
Q 025282 48 GRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS 127 (255)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 127 (255)
++.+...++..+..+++...+.. .+|.+.+++ .+..+.+++.+++.++..++++++|+++||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr 88 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFAL-----------------AMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR 88 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHH-----------------HHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 44556666667777666665543 447889999 999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhhhhHhhhhHhhhhhcCcccchhHHHHHHHhhhhhhh
Q 025282 128 VNPFRLIGVGLTVWTLAVVGCGF----SFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGY 203 (255)
Q Consensus 128 ~G~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 203 (255)
+|||++++++.++.+++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.
T Consensus 89 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 168 (451)
T 1pw4_A 89 SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG 168 (451)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhc-cch-hHHHHHHHHHHHHHHHHHHHHhccCccc
Q 025282 204 AIGYVYGGWVG-HYN-WRYAFWGEAILMFPFAVLGFVMKPLQLK 245 (255)
Q Consensus 204 ~~g~~~~~~l~-~~~-w~~~f~~~~~~~~~~~~~~~~~~p~~~~ 245 (255)
+++|.+++++. ..+ ||+.|++.+++.++..++.+++.||+++
T Consensus 169 ~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 169 GIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp TSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 99999999887 778 9999999998888777776666666554
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=4.6e-23 Score=174.66 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=146.0
Q ss_pred CcccccccccCCcchhHHHHHHHHHHHHhHhhHHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 025282 88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG 167 (255)
Q Consensus 88 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 167 (255)
.+|.+.+++|.+.++.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++..++++++.+++.|++.|++
T Consensus 22 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~ 101 (375)
T 2gfp_A 22 AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMG 101 (375)
T ss_dssp HHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhhHhhhhhcCcccchhHHHHHHHhhhhhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 025282 168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKG 246 (255)
Q Consensus 168 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~f~~~~~~~~~~~~~~~~~~p~~~~~ 246 (255)
.+...+...+++.|++|+++|++++++.+....+|..++|.+++++. ..+||+.|++.+++.++..+...+..||+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 102 TGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 99999999999999999999999999999999999999999999998 78999999998887776665444556665543
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.88 E-value=1.3e-22 Score=177.69 Aligned_cols=181 Identities=16% Similarity=0.204 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHhhhccccccccCCCCCCCCCCCCCCCcccccccccC--------CcchhHHHHHHHHHHHHhHhhHHH
Q 025282 51 LVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDL--------NNFQDGVLSSAFMVGLLVASPIFA 122 (255)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~~~~~~~~~~~~~~~g 122 (255)
.++.+++.+..++|...++. ++|.++++++. +..+.+++.+++.+|.++|++++|
T Consensus 14 ~~~a~lg~~~~Gyd~~~i~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G 76 (491)
T 4gc0_A 14 TLVATLGGLLFGYDTAVISG-----------------TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGG 76 (491)
T ss_dssp HHHHHHHHHHHHHHHHGGGG-----------------THHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777778776654 34677776642 345678999999999999999999
Q ss_pred hhhcccCchHHHHHHHHHHHHHHHHHH------------------HhhhHHHHHHHHHHHHhhhhhHhhhhHhhhhhcCc
Q 025282 123 SLARSVNPFRLIGVGLTVWTLAVVGCG------------------FSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAP 184 (255)
Q Consensus 123 ~l~dr~G~r~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~ 184 (255)
+++||+|||++++++.+++.++.++++ +++|+++++++|+++|++.|...+....+++|+.|
T Consensus 77 ~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p 156 (491)
T 4gc0_A 77 YCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP 156 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999998 47899999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhhhhhhhhhhhhhhhhhc---------cchhHHHHHHHHHHHHHHHHHHHHhccCccccccc
Q 025282 185 VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG---------HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGACF 249 (255)
Q Consensus 185 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---------~~~w~~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~ 249 (255)
+++|++..++.+.+..+|.++++.++..+. ..+||+.+.+..+..++..+. .++.||++++...
T Consensus 157 ~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peSp~~L~~ 229 (491)
T 4gc0_A 157 AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLML-LYTVPESPRWLMS 229 (491)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHH-GGGSCCCHHHHHH
T ss_pred HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhh-hhcCCCChHHHHH
Confidence 999999999999999999999888876553 246888877777665544433 4456888876433
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.87 E-value=1.5e-21 Score=171.03 Aligned_cols=152 Identities=12% Similarity=0.043 Sum_probs=138.4
Q ss_pred cccccc-----ccCCcchhHHHHHHHHHHHHhHhhHHHhhhcc-cCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 025282 90 TGIQGD-----FDLNNFQDGVLSSAFMVGLLVASPIFASLARS-VNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRML 163 (255)
Q Consensus 90 ~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (255)
+++.++ +|++..+.+++.+++.++..+++++.|+++|| +|||+++.++.++.+++.++++++++++.++++|++
T Consensus 38 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 117 (491)
T 4aps_A 38 YYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIIL 117 (491)
T ss_dssp HHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHH
T ss_pred HHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 355555 99999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHhhhhhHhhhhHhhhhhcCcccc--hhHHHHHHHhhhhhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHHHHHhc
Q 025282 164 VGVGEASFISLAAPFIDDNAPVAK--KTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMK 240 (255)
Q Consensus 164 ~G~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~f~~~~~~~~~~~~~~~~~~ 240 (255)
.|++.+...+...+++.|++|+++ |+.++++++...++|..++|.+++.+. ..|||+.|++.++..++..+..++..
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999988 778888899999999999999999998 79999999998877766665555443
Q ss_pred c
Q 025282 241 P 241 (255)
Q Consensus 241 p 241 (255)
|
T Consensus 198 ~ 198 (491)
T 4aps_A 198 K 198 (491)
T ss_dssp H
T ss_pred c
Confidence 3
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.84 E-value=9e-20 Score=161.05 Aligned_cols=149 Identities=14% Similarity=0.110 Sum_probs=135.9
Q ss_pred cccccccc------CCcchhHHHHHHHHHHHHhHhhHHHhhhccc-CchHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHH
Q 025282 90 TGIQGDFD------LNNFQDGVLSSAFMVGLLVASPIFASLARSV-NPFRLIGVGLTVWTLAVVGCGFSF-SFWMIAICR 161 (255)
Q Consensus 90 ~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 161 (255)
+++.+++| ++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 46678888 9999999999999999999999999999999 999999999999999999999999 999999999
Q ss_pred HHHHhhhhhHhhhhHhhhhhcCcccchhHHHHH---HHhhhhhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHHHH
Q 025282 162 MLVGVGEASFISLAAPFIDDNAPVAKKTAWLGV---FYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGF 237 (255)
Q Consensus 162 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~-~~~w~~~f~~~~~~~~~~~~~~~ 237 (255)
++.|++.+...+...+++.|++|+++|+++.+. .+...++|..++|.+++.+. ..+||+.|++.+++.++..+..+
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876666 88999999999999999988 78999999998887666555544
Q ss_pred H
Q 025282 238 V 238 (255)
Q Consensus 238 ~ 238 (255)
+
T Consensus 197 ~ 197 (524)
T 2xut_A 197 L 197 (524)
T ss_dssp S
T ss_pred H
Confidence 3
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.70 E-value=7.7e-17 Score=139.21 Aligned_cols=149 Identities=11% Similarity=-0.003 Sum_probs=130.9
Q ss_pred cccccccCCcchhHHHHHHHHHHHHhHhhHHHhhhccc--CchHHHHHHHHHHH-HHHHHHHHh--hhHHHHHHHHHHHH
Q 025282 91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV--NPFRLIGVGLTVWT-LAVVGCGFS--FSFWMIAICRMLVG 165 (255)
Q Consensus 91 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~G 165 (255)
++++.+|.+..+.+++.+...++..++.++.|++.||+ |||+.+.++..+.. ++.++..+. .+.+.+.+..++.|
T Consensus 278 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 357 (451)
T 1pw4_A 278 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 357 (451)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 44556899999999999999999999999999999999 99999888877776 666666665 37788888889999
Q ss_pred hhhhhHhhhhHhhhhhcCcccchhHHHHHHHhhhhh-hhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHHHHHh
Q 025282 166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS-GYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM 239 (255)
Q Consensus 166 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~-~~~w~~~f~~~~~~~~~~~~~~~~~ 239 (255)
++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+. ..||+..|++.+++.++..++.++.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999898899999999999999999999999999 9999999999988 8899999999988877776666554
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.61 E-value=5.6e-15 Score=127.00 Aligned_cols=146 Identities=10% Similarity=0.025 Sum_probs=124.5
Q ss_pred cchhHHHHHHHHHHHHhHhhHHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHhhhhHhhh
Q 025282 100 NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFI 179 (255)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~ 179 (255)
....++..++..++..++.++.|++.||+|||+.+..+.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888999999999999999999999999988888888888778888888888888888877777788999
Q ss_pred hhcCcccchhHHHHH-HHhhhhhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHHHHHhccCccc
Q 025282 180 DDNAPVAKKTAWLGV-FYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLK 245 (255)
Q Consensus 180 ~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~-~~~w~~~f~~~~~~~~~~~~~~~~~~p~~~~ 245 (255)
.|.+|++.|+++.++ ++....+|..++|.+++++. ..|++..|.+.+++.++..++.+++.||+++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999999998 48888899999999999888 7789999999888887777666655565443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.57 E-value=4.1e-16 Score=134.13 Aligned_cols=144 Identities=16% Similarity=0.129 Sum_probs=105.2
Q ss_pred cccccccCCcchhHHHHHHHHHHHHhHhhHHHhhhcccCchHHHHHHHHHHHHHH---HHHHHhhhHH-HHHHHHHHHHh
Q 025282 91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAV---VGCGFSFSFW-MIAICRMLVGV 166 (255)
Q Consensus 91 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~l~G~ 166 (255)
++++++|++..+.|++.+++.++..++++++|+++||+|||++++++..+.+++. ..+.+.+... .+...+++.|+
T Consensus 33 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (417)
T 2cfq_A 33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI 112 (417)
T ss_dssp HHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999998888775532 2223332221 23445556566
Q ss_pred hhhhHhhhhHhhhhhcCcc--cchhHHHHHHHhhhhhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 025282 167 GEASFISLAAPFIDDNAPV--AKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAV 234 (255)
Q Consensus 167 ~~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~f~~~~~~~~~~~~ 234 (255)
+.+...+.....+.++.++ ++++...+.......+|..++|.+++++...+||+.|++.++..++..+
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~ 182 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAV 182 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHH
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 5555555545555555443 4567777888888899999999999988756899999887766544333
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.56 E-value=2.7e-14 Score=122.86 Aligned_cols=137 Identities=9% Similarity=-0.106 Sum_probs=118.4
Q ss_pred ccccccCCcchhHHHHHHHHHHHHhHhhHHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhH
Q 025282 92 IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASF 171 (255)
Q Consensus 92 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 171 (255)
+++.+|.+..+.++..+...++..++.++.|++.||+|||+.+.++.++.+++.++..+.++.+.++.. ++.|++.+..
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 364 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ 364 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence 556679999999999999999999999999999999999999999999999999888888877665544 8889999999
Q ss_pred hhhhHhhhhhcCcccchhHHHHHHHhhhhhhhhhhhhhhhhhc-cch-hHHHHHHHHHHHHH
Q 025282 172 ISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYN-WRYAFWGEAILMFP 231 (255)
Q Consensus 172 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~-w~~~f~~~~~~~~~ 231 (255)
.+...++..|.+|++ ++.+.++.. ...+|..++|.+.+++. ..| ++..|++.+++.++
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999999966 888888877 56799999999999988 777 99888876655443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.54 E-value=2.5e-14 Score=125.11 Aligned_cols=154 Identities=14% Similarity=0.036 Sum_probs=123.3
Q ss_pred cccccccCCcchhHHHHHHHHHHHHhHhhHHHhhhcccCchHHHH-----HHHHHHHHHHHHHHHhh---------hHHH
Q 025282 91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIG-----VGLTVWTLAVVGCGFSF---------SFWM 156 (255)
Q Consensus 91 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~-----~~~~~~~~~~~~~~~~~---------~~~~ 156 (255)
+.++.++.+..+.++..+...++..++.++.+++.||+|||+... .+.++.+++.++..+.. +.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4aps_A 309 FAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLW 388 (491)
T ss_dssp HHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHH
T ss_pred HHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHH
Confidence 444556766667788888999999999999999999999986655 77777777776666643 6777
Q ss_pred HHHHHHHHHhhhhhHhhhhHhhhhhcCcccchhHHHHHHHhhhhhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 025282 157 IAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLG 236 (255)
Q Consensus 157 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~f~~~~~~~~~~~~~~ 236 (255)
+.+..++.|++.+...+....++.|.+|+++|++++++.+....+|..+++.+.+.+...++.+.|.+.+++.++..++.
T Consensus 389 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 389 LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999899999999999999999999999999999999999999988876677788888888887777766
Q ss_pred HHhccCcc
Q 025282 237 FVMKPLQL 244 (255)
Q Consensus 237 ~~~~p~~~ 244 (255)
+++.++..
T Consensus 469 ~~~~~~~~ 476 (491)
T 4aps_A 469 VFLSKRIQ 476 (491)
T ss_dssp HHC-----
T ss_pred HHHHHHHH
Confidence 66655443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.49 E-value=2.1e-14 Score=125.41 Aligned_cols=156 Identities=10% Similarity=-0.007 Sum_probs=116.9
Q ss_pred ccccccccCCcchhHHHHHHHHHHHHhHhhHHHhhhcccCchHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHH
Q 025282 90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF-----SFWMIAICRMLV 164 (255)
Q Consensus 90 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ 164 (255)
+.+.++.+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +...+....+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 466667777777777777888888999999999999999999999999888887776655431 222222222222
Q ss_pred HhhhhhHhhhhHhhhhhcCcccchhHHHHHHHhhhhhhhhhhhhhhhhhc-------cchhHHHHHHHHHHHHHHHHHHH
Q 025282 165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-------HYNWRYAFWGEAILMFPFAVLGF 237 (255)
Q Consensus 165 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-------~~~w~~~f~~~~~~~~~~~~~~~ 237 (255)
+.......++...+.+|.+|++.|++++++......+|..+++.+.+.+. ..++.+.|++.++++++..++.+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 22222334667789999999999999999999999999988887766553 34566788899999888888888
Q ss_pred HhccCccc
Q 025282 238 VMKPLQLK 245 (255)
Q Consensus 238 ~~~p~~~~ 245 (255)
++.||++.
T Consensus 461 ~~~PETkg 468 (491)
T 4gc0_A 461 KFVPETKG 468 (491)
T ss_dssp HHCCCCTT
T ss_pred heecCCCC
Confidence 88898754
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.29 E-value=4.3e-12 Score=107.05 Aligned_cols=133 Identities=7% Similarity=-0.032 Sum_probs=106.5
Q ss_pred cccccccCCcchhHHHHHHHHHHHHhHhhHHHhhhcccCchHHHHHHHHH-HHHHHH--HHHH--hhhHHHHHHHHHHHH
Q 025282 91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTV-WTLAVV--GCGF--SFSFWMIAICRMLVG 165 (255)
Q Consensus 91 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~l~G 165 (255)
++++++|.++.+.+++.+...++..++.++.+++.||+|++. ..+..+ ...+.. .... .++.+.+++..++.|
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 302 (375)
T 2gfp_A 225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFF 302 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Confidence 445568999999999999999999999999999999998833 233322 222222 2222 246777888889999
Q ss_pred hhhhhHhhhhHhhhhhcCcccchhHHHHHHHhhhhhhhhhhhhhhhhhc-cchhHHHHHHHH
Q 025282 166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEA 226 (255)
Q Consensus 166 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~f~~~~ 226 (255)
++.+...+....++.|..| ++|+++.++.+....+|..++|.+.+.+. ..+|+..+.+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 303 FGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999998 89999999999999999999999999887 677877776643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.05 E-value=3.6e-10 Score=99.44 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHHHhHhhHHHhhh----cccCc----hHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHH
Q 025282 102 QDGVLSSAFMVGLLVASPIFASLA----RSVNP----FRLIGVGLTVWTLAVVGCGFS---------FSFWMIAICRMLV 164 (255)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~g~l~----dr~G~----r~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~ 164 (255)
..+++.....++..++.++.+++. ||.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 356666666666777777777764 55443 356777888888887777664 3677788889999
Q ss_pred HhhhhhHhhhhHhhhhhcCcccchhHHHHHHHhhhhhhhhhhhhhhhhhc-c--chh---------HHHHHHHHHHHHHH
Q 025282 165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H--YNW---------RYAFWGEAILMFPF 232 (255)
Q Consensus 165 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~--~~w---------~~~f~~~~~~~~~~ 232 (255)
|++.+...+....++.|..|+++||+++|+.+....+|..++|.+.+.+. . .+| +..|++.+++.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886 2 234 33467777766666
Q ss_pred HHHHHHhccC
Q 025282 233 AVLGFVMKPL 242 (255)
Q Consensus 233 ~~~~~~~~p~ 242 (255)
.++.+++.++
T Consensus 496 ~~~~~~~~~~ 505 (524)
T 2xut_A 496 AIVFALYARS 505 (524)
T ss_dssp HHHHC-----
T ss_pred HHHHHHHHHH
Confidence 6555444443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=64.89 E-value=2.3 Score=19.45 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=11.5
Q ss_pred HHHhhhcccCchHH
Q 025282 120 IFASLARSVNPFRL 133 (255)
Q Consensus 120 ~~g~l~dr~G~r~~ 133 (255)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999865
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=35.59 E-value=78 Score=19.49 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 025282 217 NWRYAFWGEAILMFPFAVLGFVMKPLQLKG 246 (255)
Q Consensus 217 ~w~~~f~~~~~~~~~~~~~~~~~~p~~~~~ 246 (255)
||-..+++...+.++..-.+-.++||+.+.
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~ 60 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 455555555444444444444556876543
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=34.59 E-value=84 Score=23.42 Aligned_cols=22 Identities=5% Similarity=0.202 Sum_probs=15.8
Q ss_pred HHHHHHHhHhhHHHhhhcccCc
Q 025282 109 AFMVGLLVASPIFASLARSVNP 130 (255)
Q Consensus 109 ~~~~~~~~~~~~~g~l~dr~G~ 130 (255)
-|.+++.++..+.|++.||..+
T Consensus 101 GYLiGF~~aA~v~G~l~~~~~~ 122 (198)
T 4dve_A 101 GYRIAWLFTPFLIGFFLKKLKI 122 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHHccc
Confidence 4566777778888888887653
No 18
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=21.29 E-value=1.6e+02 Score=18.32 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 025282 216 YNWRYAFWGEAILMFPFAVLGFVMKPLQLKG 246 (255)
Q Consensus 216 ~~w~~~f~~~~~~~~~~~~~~~~~~p~~~~~ 246 (255)
.||-..+++...+.++..-.+-.+.||+.+.
T Consensus 31 AG~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~ 61 (82)
T 2nrg_A 31 AGWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 61 (82)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHSSTTTTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 3455555555444444444444556876543
Done!