BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025283
         (255 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AJ3|A Chain A, Solution Structure Of The Spectrin Repeat, Nmr, 20
           Structures
          Length = 110

 Score = 28.5 bits (62), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 7/42 (16%)

Query: 113 FLNHLNNPENWKRLKSCLVKSED-------CNNLSKKYKTLK 147
           F   +++ E+W + K  LV SED         NL KK+K L+
Sbjct: 12  FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLE 53


>pdb|1U5P|A Chain A, Crystal Structure Of Repeats 15 And 16 Of Chicken Brain
           Alpha Spectrin
          Length = 216

 Score = 28.5 bits (62), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 7/42 (16%)

Query: 113 FLNHLNNPENWKRLKSCLVKSED-------CNNLSKKYKTLK 147
           F   +++ E+W + K  LV SED         NL KK+K L+
Sbjct: 114 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLE 155


>pdb|1CUN|A Chain A, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
           Alpha Spectrin
 pdb|1CUN|B Chain B, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
           Alpha Spectrin
 pdb|1CUN|C Chain C, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
           Alpha Spectrin
          Length = 213

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 7/42 (16%)

Query: 113 FLNHLNNPENWKRLKSCLVKSED-------CNNLSKKYKTLK 147
           F   +++ E+W + K  LV SED         NL KK+K L+
Sbjct: 5   FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLE 46


>pdb|1U4Q|A Chain A, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken
           Brain Alpha Spectrin
 pdb|1U4Q|B Chain B, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken
           Brain Alpha Spectrin
          Length = 322

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 7/42 (16%)

Query: 113 FLNHLNNPENWKRLKSCLVKSED-------CNNLSKKYKTLK 147
           F   +++ E+W + K  LV SED         NL KK+K L+
Sbjct: 114 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLE 155


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.138    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,835,732
Number of Sequences: 62578
Number of extensions: 244457
Number of successful extensions: 613
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 7
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)