Query 025283
Match_columns 255
No_of_seqs 138 out of 1269
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:16:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 100.0 5E-38 1.1E-42 269.1 15.3 209 2-253 12-233 (237)
2 PF00335 Tetraspannin: Tetrasp 99.9 1.9E-25 4.1E-30 186.4 -3.2 201 2-248 5-221 (221)
3 cd03154 TM4SF3_like_LEL Tetras 99.5 3.6E-15 7.7E-20 110.8 1.4 69 81-168 1-72 (100)
4 cd03163 TM4SF8_like_LEL Tetras 99.5 5.1E-15 1.1E-19 110.9 1.7 95 84-220 1-104 (105)
5 cd03161 TM4SF2_6_like_LEL Tetr 99.5 5.9E-15 1.3E-19 110.2 1.9 68 86-170 2-74 (104)
6 cd03166 CD63_LEL Tetraspanin, 99.5 7E-15 1.5E-19 109.0 0.8 92 86-220 2-99 (99)
7 cd03160 CD37_CD82_like_LEL Tet 99.5 1.1E-14 2.4E-19 111.2 0.8 67 84-164 1-75 (117)
8 cd03159 TM4SF9_like_LEL Tetras 99.5 1.3E-14 2.9E-19 111.6 0.9 63 85-164 1-77 (121)
9 cd03155 CD151_like_LEL Tetrasp 99.4 2.9E-14 6.2E-19 107.7 1.6 70 85-169 1-82 (110)
10 cd03165 NET-5_like_LEL Tetrasp 99.4 2.3E-14 5.1E-19 105.9 0.4 69 86-169 2-74 (98)
11 cd03164 CD53_like_LEL Tetraspa 99.4 3.1E-14 6.8E-19 102.8 0.9 83 86-224 2-86 (86)
12 cd03158 penumbra_like_LEL Tetr 99.4 3.3E-14 7.1E-19 109.0 0.8 63 85-164 1-75 (119)
13 cd03156 uroplakin_I_like_LEL T 99.4 2.8E-14 6E-19 108.2 0.2 65 84-164 2-77 (114)
14 cd03167 oculospanin_like_LEL T 99.4 8.3E-14 1.8E-18 107.0 1.2 61 87-164 3-75 (120)
15 cd03157 TM4SF12_like_LEL Tetra 99.3 7.2E-13 1.6E-17 99.0 4.2 59 96-169 15-75 (103)
16 cd03162 peripherin_like_LEL Te 99.3 5.9E-13 1.3E-17 104.7 0.8 74 86-171 2-106 (143)
17 cd03127 tetraspanin_LEL Tetras 99.2 1.9E-12 4.2E-17 93.5 0.8 50 97-164 15-64 (90)
18 cd03152 CD9_LEL Tetraspanin, e 99.1 1.8E-11 4E-16 88.0 -0.2 56 85-162 1-59 (84)
19 cd03151 CD81_like_LEL Tetraspa 98.5 1.5E-08 3.2E-13 72.8 -0.5 59 86-162 2-62 (84)
20 PRK12585 putative monovalent c 86.2 6.1 0.00013 32.6 8.2 44 9-52 13-58 (197)
21 PF14967 FAM70: FAM70 protein 85.1 0.58 1.3E-05 40.9 2.0 75 3-82 29-106 (327)
22 KOG4433 Tweety transmembrane/c 78.4 5.2 0.00011 37.5 5.7 41 35-75 210-251 (526)
23 PF04103 CD20: CD20-like famil 78.1 0.69 1.5E-05 36.0 0.0 68 9-78 7-75 (150)
24 PF05915 DUF872: Eukaryotic pr 74.5 6.9 0.00015 29.6 4.6 41 9-50 51-92 (115)
25 cd07912 Tweety_N N-terminal do 74.0 8.9 0.00019 35.7 6.1 35 38-72 213-247 (418)
26 PF09323 DUF1980: Domain of un 72.0 20 0.00043 29.2 7.2 65 12-76 4-87 (182)
27 PF11127 DUF2892: Protein of u 63.3 19 0.00041 24.0 4.5 41 9-56 14-55 (66)
28 PF03729 DUF308: Short repeat 59.5 47 0.001 21.8 7.3 47 10-60 1-48 (72)
29 PF04156 IncA: IncA protein; 58.3 26 0.00057 28.5 5.4 16 36-51 10-25 (191)
30 PRK05715 NADH:ubiquinone oxido 56.1 51 0.0011 23.9 6.1 69 9-82 8-77 (100)
31 PF11384 DUF3188: Protein of u 53.7 25 0.00054 22.3 3.5 20 32-51 23-42 (49)
32 PF04906 Tweety: Tweety; Inte 52.0 6.5 0.00014 36.5 0.9 31 42-72 194-224 (406)
33 KOG3646 Acetylcholine receptor 51.7 39 0.00084 31.8 5.8 87 2-90 236-325 (486)
34 PRK08389 putative monovalent c 51.6 60 0.0013 24.4 6.0 46 9-54 6-52 (114)
35 COG4993 Gcd Glucose dehydrogen 51.0 44 0.00095 32.8 6.1 55 9-74 11-66 (773)
36 TIGR01478 STEVOR variant surfa 49.5 22 0.00048 31.2 3.6 33 220-252 258-290 (295)
37 PTZ00370 STEVOR; Provisional 49.0 22 0.00049 31.2 3.6 38 215-252 249-286 (296)
38 PF00420 Oxidored_q2: NADH-ubi 47.3 1E+02 0.0022 21.9 8.2 72 10-86 4-76 (95)
39 KOG4812 Golgi-associated prote 47.1 20 0.00044 30.6 3.0 30 33-62 225-254 (262)
40 COG2245 Predicted membrane pro 44.1 1.8E+02 0.0038 23.8 8.3 16 10-25 32-48 (182)
41 COG3247 HdeD Uncharacterized c 42.3 95 0.0021 25.6 6.2 48 9-60 23-71 (185)
42 PF06770 Arif-1: Actin-rearran 40.7 1.2E+02 0.0026 25.2 6.5 49 10-58 7-65 (196)
43 PF04156 IncA: IncA protein; 40.5 1.3E+02 0.0028 24.3 6.9 9 37-45 18-26 (191)
44 KOG3950 Gamma/delta sarcoglyca 39.6 34 0.00074 29.4 3.2 27 61-87 35-61 (292)
45 PRK07375 putative monovalent c 39.5 1.6E+02 0.0034 22.0 6.6 46 9-54 6-52 (112)
46 PF11023 DUF2614: Protein of u 39.1 1.3E+02 0.0028 22.7 5.8 38 33-75 14-51 (114)
47 PF05640 NKAIN: Na,K-Atpase In 38.1 1.5E+02 0.0033 24.7 6.7 45 34-78 33-77 (200)
48 PF02932 Neur_chan_memb: Neuro 36.5 1.8E+02 0.004 22.6 7.2 31 57-87 52-82 (237)
49 PRK10209 acid-resistance membr 36.4 2.2E+02 0.0047 23.3 7.6 46 9-58 25-71 (190)
50 PF15125 TMEM238: TMEM238 prot 36.2 1.4E+02 0.0029 20.2 5.1 36 10-53 15-51 (65)
51 PF01102 Glycophorin_A: Glycop 35.9 59 0.0013 24.9 3.7 12 239-250 83-94 (122)
52 PF14387 DUF4418: Domain of un 35.3 1.9E+02 0.0042 22.1 6.5 18 37-54 41-58 (124)
53 PF05454 DAG1: Dystroglycan (D 34.8 13 0.00028 32.9 0.0 31 220-250 145-175 (290)
54 PF11381 DUF3185: Protein of u 34.3 75 0.0016 21.0 3.6 17 35-51 42-58 (59)
55 PF13706 PepSY_TM_3: PepSY-ass 32.6 85 0.0018 18.4 3.3 24 35-58 10-33 (37)
56 PRK07946 putative monovalent c 31.5 1.2E+02 0.0026 24.5 5.0 42 9-51 8-50 (163)
57 cd03153 PHEMX_like_LEL Tetrasp 31.2 20 0.00043 25.5 0.5 14 124-141 35-48 (87)
58 CHL00015 ndhE NADH dehydrogena 30.2 2.2E+02 0.0047 20.7 6.8 72 8-82 6-78 (101)
59 PF12877 DUF3827: Domain of un 30.1 24 0.00053 34.5 1.0 36 218-253 267-302 (684)
60 PF02439 Adeno_E3_CR2: Adenovi 29.2 1.3E+02 0.0029 18.0 3.8 8 225-232 11-18 (38)
61 PRK02935 hypothetical protein; 26.7 2.7E+02 0.0059 20.7 6.4 34 34-72 16-49 (110)
62 KOG4753 Predicted membrane pro 26.7 30 0.00065 26.2 0.8 14 10-23 59-72 (124)
63 PF13903 Claudin_2: PMP-22/EMP 26.0 2.9E+02 0.0063 21.2 6.6 29 37-65 74-103 (172)
64 PRK08388 putative monovalent c 25.9 1.5E+02 0.0032 22.5 4.5 42 9-50 6-48 (119)
65 PRK10209 acid-resistance membr 25.6 3E+02 0.0066 22.4 6.7 24 37-60 108-131 (190)
66 PF11297 DUF3098: Protein of u 25.2 1.8E+02 0.004 19.9 4.3 17 7-23 7-25 (69)
67 PF11773 PulG: Type II secreto 24.8 1.1E+02 0.0025 21.6 3.4 38 36-75 5-42 (82)
68 KOG4556 Predicted membrane pro 24.8 3.2E+02 0.0069 22.4 6.3 44 34-77 30-73 (205)
69 KOG3488 Dolichol phosphate-man 24.0 1.5E+02 0.0033 20.3 3.7 35 216-250 44-78 (81)
70 PF12805 FUSC-like: FUSC-like 22.9 5E+02 0.011 22.5 8.3 15 41-55 31-45 (284)
71 PRK11901 hypothetical protein; 21.1 98 0.0021 27.8 3.0 24 35-58 37-60 (327)
72 PF12191 stn_TNFRSF12A: Tumour 21.0 8 0.00017 29.6 -3.2 19 236-254 92-110 (129)
73 PF06703 SPC25: Microsomal sig 20.7 2.5E+02 0.0054 22.2 5.1 31 34-64 26-60 (162)
74 PF01299 Lamp: Lysosome-associ 20.6 1E+02 0.0022 27.3 3.1 29 224-254 275-303 (306)
75 PF11239 DUF3040: Protein of u 20.1 2.8E+02 0.006 19.2 4.7 11 38-48 49-59 (82)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=100.00 E-value=5e-38 Score=269.14 Aligned_cols=209 Identities=18% Similarity=0.388 Sum_probs=166.8
Q ss_pred chHHHHH--HHHHHHHHHHHHHhc-ccCcchhh----h--hhhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 025283 2 LIYISNV--QLLAITIIIFGVWMS-THHDNCRR----S--LTLPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCL 72 (255)
Q Consensus 2 ll~~~N~--~l~G~~ll~~Giw~~-~~~~~~~~----~--~~~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~v 72 (255)
++|++|+ |++|++++++|+|++ ++.....- + ..+.++++|.+++++|++||+||.|||+|+|.+|++++++
T Consensus 12 ~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~l~l 91 (237)
T KOG3882|consen 12 LLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYFILLLL 91 (237)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHHHHH
Confidence 5789999 799999999999999 87642221 1 2466999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhheeEecCCCccc---ccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhh
Q 025283 73 VLVAILVFTVLAFIITNNGSGHS---VAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQF 149 (255)
Q Consensus 73 l~~~ei~~~i~~~~~~~~~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw 149 (255)
++++|+++++++++++++++++. ..++.++.|+.+++ ..+.||.+|+ +++|||++| |.||
T Consensus 92 ~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~---------~~~~~d~~Q~----~~~CCG~~~----~~~~ 154 (237)
T KOG3882|consen 92 LFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPD---------LGEAWDKLQR----ELKCCGVNG----YSDY 154 (237)
T ss_pred HHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCcc---------HHHHHHHHHH----hccCCcCCC----chHH
Confidence 99999999999999999987632 23444555655442 2379999999 999999999 9999
Q ss_pred hhCCCCCCCCCCcCCCCC-CCCCccCCcccccCCCCCCCCcccccccCCCceeeeeCcchHHHHHHHHHHhHHHHHHHHH
Q 025283 150 KSAKLTPIEAGCCRPPFE-CGYPVVNASYYDLSFHPTSSNKDCKLYKNSRAVKCYNCDSCKAGVAQYMKIEWRVVAIFNL 228 (255)
Q Consensus 150 ~~~~~~~vP~SCC~~~~~-C~~~~~~~~~~~~~~~g~~~~~~c~~~~~~~~~~C~~~~gC~~~~~~~l~~~~~~v~~~~~ 228 (255)
.+.+...+|+|||++... ......++. . +.+||.+++.+|+++++..++++++
T Consensus 155 ~~~~~~~vP~SCC~~~~~~~~~~~~~~~--------------------~------~~~GC~~~~~~~~~~~~~~i~~~~~ 208 (237)
T KOG3882|consen 155 FNCSSNNVPPSCCKRTRRQKFPQDVPDN--------------------I------YTEGCLEKLSSWLESNLLIIGGVGL 208 (237)
T ss_pred hcCCCCCCCcccCCCcccccccccchhh--------------------h------hccccHHHHHHHHHHhhHHHHHHHH
Confidence 876522299999986111 110001111 1 2444459999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccccC
Q 025283 229 ILFVVLSIVYFVGCCARRNAVRSRS 253 (255)
Q Consensus 229 ~~~~lqi~~~~~a~~l~~~~~~~~~ 253 (255)
+++++|++++++|+++.+++++++.
T Consensus 209 ~i~~~~~~~~~~a~~l~~~i~~~~~ 233 (237)
T KOG3882|consen 209 GIAVLELLGMILACCLANAIRNQRD 233 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998877653
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.89 E-value=1.9e-25 Score=186.40 Aligned_cols=201 Identities=22% Similarity=0.436 Sum_probs=41.5
Q ss_pred chHHHHH--HHHHHHHHHHHHHhc-ccCcc--h-h---hhhhhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 025283 2 LIYISNV--QLLAITIIIFGVWMS-THHDN--C-R---RSLTLPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCL 72 (255)
Q Consensus 2 ll~~~N~--~l~G~~ll~~Giw~~-~~~~~--~-~---~~~~~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~v 72 (255)
+++++|+ +++|++++++|+|++ ..+.. . . ......++++|+++++++++|++|+.++||+++..|.+++++
T Consensus 5 ~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~~~~~ 84 (221)
T PF00335_consen 5 ILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYIILLIL 84 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccchhh
Confidence 4667888 699999999999994 32211 1 1 122455778999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhheeEecCCCcccccchhh-----hhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChh
Q 025283 73 VLVAILVFTVLAFIITNNGSGHSVAGLRY-----KEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLK 147 (255)
Q Consensus 73 l~~~ei~~~i~~~~~~~~~~~~~~~~~~~-----~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~ 147 (255)
+++++++.+++++.++++.+... ++.. +.+..++ ..++.||.+|+ +++|||.++ |+
T Consensus 85 ~~v~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~iq~----~~~CCG~~~----~~ 145 (221)
T PF00335_consen 85 LFVLELVVGIVAFSYRDQLNSSL--KDGLSLRCMKSYNSNE---------SFSEAWDNIQE----KFECCGVNS----PD 145 (221)
T ss_dssp ---------------HHHHHHHH--HHHHHHHHHHSSTT-C---------HHHHHHHHHHH----HHT--SSTT----CH
T ss_pred HHHHHHHHHHhhhhccccccccc--cccccchhhhcccccc---------chhhheecccc----cccccCCCC----Cc
Confidence 99999999999999888755421 1111 1111111 25789999999 999999999 99
Q ss_pred hhhhCCC--CCCCCCCcCCCCCCCCCccCCcccccCCCCCCCCcccccccCCCceeeeeCcchHHHHHHHHHHhHHHHHH
Q 025283 148 QFKSAKL--TPIEAGCCRPPFECGYPVVNASYYDLSFHPTSSNKDCKLYKNSRAVKCYNCDSCKAGVAQYMKIEWRVVAI 225 (255)
Q Consensus 148 Dw~~~~~--~~vP~SCC~~~~~C~~~~~~~~~~~~~~~g~~~~~~c~~~~~~~~~~C~~~~gC~~~~~~~l~~~~~~v~~ 225 (255)
||..... ...|++|..+ ..+.. +...+ ..+.+||.+++.++++++...+++
T Consensus 146 d~~~~~~~~~~~~~~~~~~-~~~~~--------------------~~~~~------~~~~~gC~~~l~~~~~~~~~~~~~ 198 (221)
T PF00335_consen 146 DWFTSKWSSCSSPDSCPDC-QCPDD--------------------CSSEN------SIYTRGCYDKLREYLRSYLKYIGI 198 (221)
T ss_dssp HHHHHHHHT---------T-CS-TT--------------------CCCCH------CCTST-HHHHHHHHHCT-------
T ss_pred ccccccccccccccccccc-ccccc--------------------ccccc------cccCCChHHHHHHHHHHHHHHHHH
Confidence 9975421 1111111100 00000 00000 224567779999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 025283 226 FNLILFVVLSIVYFVGCCARRNA 248 (255)
Q Consensus 226 ~~~~~~~lqi~~~~~a~~l~~~~ 248 (255)
++++++++|++++++|+++.|++
T Consensus 199 ~~~~~~~l~~~~~~~a~~l~~~~ 221 (221)
T PF00335_consen 199 VSLAILVLQLIGIILACCLCRHI 221 (221)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999988864
No 3
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=99.51 E-value=3.6e-15 Score=110.78 Aligned_cols=69 Identities=7% Similarity=0.014 Sum_probs=50.4
Q ss_pred HhhheeEecCCCcc--cccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCCCCCCC
Q 025283 81 TVLAFIITNNGSGH--SVAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAKLTPIE 158 (255)
Q Consensus 81 ~i~~~~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~~~~vP 158 (255)
||++|+++++++.. ..+.+.+++|+.++. ..+.+||.+|+ +|+|||+++ |.||.. ..+|
T Consensus 1 gi~~~v~r~~i~~~i~~~~~~~i~~y~~~~~--------~~~~~~d~lQ~----~l~CCG~~~----~~d~~~---~~vP 61 (100)
T cd03154 1 GIVGAVYKPKIENELKEKNTKLLSLLGQNAK--------SVKKSLEKFQK----ELKCCGLVN----GADDWG---NDIP 61 (100)
T ss_pred CEEEEEeHHHHHHHHHHHHHHHHHHcCCChH--------HHHHHHHHHHH----cCCCCCCCC----chhhcc---CCCC
Confidence 57889999987652 345667777754311 25789999999 999999999 888864 2599
Q ss_pred CCCcC-CCCCC
Q 025283 159 AGCCR-PPFEC 168 (255)
Q Consensus 159 ~SCC~-~~~~C 168 (255)
+|||+ ++.+|
T Consensus 62 ~SCcc~~~~~c 72 (100)
T cd03154 62 ASCNCTTTQSD 72 (100)
T ss_pred CCCcCCCCCCC
Confidence 99964 33444
No 4
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=99.50 E-value=5.1e-15 Score=110.93 Aligned_cols=95 Identities=8% Similarity=0.257 Sum_probs=61.8
Q ss_pred heeEecCCCcc--cccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCC------CC
Q 025283 84 AFIITNNGSGH--SVAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAK------LT 155 (255)
Q Consensus 84 ~~~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~------~~ 155 (255)
+++++++++.. ..+.+.+++|+.++ ..+.+||.+|+ +|+|||+++ |+||.... ..
T Consensus 1 ~~v~~~~v~~~~~~~~~~~~~~y~~~~---------~~~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~ 63 (105)
T cd03163 1 GYVYRAKVEDELNPSIDKVFNKYNGTN---------AESRAVDYLQR----QLQCCGIHN----YTDWENTPWFKESKNN 63 (105)
T ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHH----hCcccCCCC----HHHHhhchhhhcCCCC
Confidence 35677776542 23455666665432 24789999999 999999999 99996421 24
Q ss_pred CCCCCCcCCC-CCCCCCccCCcccccCCCCCCCCcccccccCCCceeeeeCcchHHHHHHHHHHhH
Q 025283 156 PIEAGCCRPP-FECGYPVVNASYYDLSFHPTSSNKDCKLYKNSRAVKCYNCDSCKAGVAQYMKIEW 220 (255)
Q Consensus 156 ~vP~SCC~~~-~~C~~~~~~~~~~~~~~~g~~~~~~c~~~~~~~~~~C~~~~gC~~~~~~~l~~~~ 220 (255)
.||.|||..+ ..|+....... ..+++||+ +++.+|+++++
T Consensus 64 ~vP~SCC~~~~~~C~~~~~~~~-------------------~i~~~GC~------~~~~~~~~~~~ 104 (105)
T cd03163 64 SVPLSCCKETFTSCTGSLTQPK-------------------DLYQEGCE------AKLVKKLQEVM 104 (105)
T ss_pred ccCcCccCCCCCCcccCCCCCC-------------------chhhhccH------HHHHHHHHHHh
Confidence 6999999643 35753211100 11222266 99999999875
No 5
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=99.50 E-value=5.9e-15 Score=110.21 Aligned_cols=68 Identities=12% Similarity=0.312 Sum_probs=47.8
Q ss_pred eEecCCCcc--cccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCC---CCCCCCC
Q 025283 86 IITNNGSGH--SVAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAK---LTPIEAG 160 (255)
Q Consensus 86 ~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~---~~~vP~S 160 (255)
++++++... ..+.+++++|..++ ..+.+||.+|+ +|+|||+++ |+||.... ...||.|
T Consensus 2 v~r~~i~~~l~~~l~~~i~~y~~~~---------~~~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~vP~S 64 (104)
T cd03161 2 VFRHEIKGTFLRTYNEAVSNYNGDD---------ERSDAVDTVQR----TLHCCGVEN----YTDWLNSPYFLEKGIPLS 64 (104)
T ss_pred CchHHHHHHHHHHHHHHHHHhcCCh---------hHHHHHHHHHh----cCcCcCCCC----hhhhhccccccCCCcCcc
Confidence 556665442 34456677775433 24679999999 999999999 99997532 2369999
Q ss_pred CcCCCCCCCC
Q 025283 161 CCRPPFECGY 170 (255)
Q Consensus 161 CC~~~~~C~~ 170 (255)
||++...|+.
T Consensus 65 CC~~~~~C~~ 74 (104)
T cd03161 65 CCKNRSDCSP 74 (104)
T ss_pred cccCCCCCCc
Confidence 9976556754
No 6
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=99.48 E-value=7e-15 Score=109.01 Aligned_cols=92 Identities=10% Similarity=0.243 Sum_probs=59.9
Q ss_pred eEecCCCcc--cccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCC---CCCCCCC
Q 025283 86 IITNNGSGH--SVAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAK---LTPIEAG 160 (255)
Q Consensus 86 ~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~---~~~vP~S 160 (255)
+++++++.. ..+.+.++.|..++ ..+.+||.+|+ +|+|||+++ |+||.... ...||.|
T Consensus 2 v~r~~v~~~i~~~l~~~~~~y~~~~---------~~~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~vP~S 64 (99)
T cd03166 2 VFRDKVMSEFNDSFNQMISNYNKTN---------DFRKILDRMQK----DLKCCGANN----YTDWENIPSLDTDSVPDS 64 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCH---------HHHHHHHHHHH----HhcccCCCC----hhhhhcccCCCCCCCCcC
Confidence 456665442 23456677775421 25789999999 999999999 99997531 2469999
Q ss_pred CcCCC-CCCCCCccCCcccccCCCCCCCCcccccccCCCceeeeeCcchHHHHHHHHHHhH
Q 025283 161 CCRPP-FECGYPVVNASYYDLSFHPTSSNKDCKLYKNSRAVKCYNCDSCKAGVAQYMKIEW 220 (255)
Q Consensus 161 CC~~~-~~C~~~~~~~~~~~~~~~g~~~~~~c~~~~~~~~~~C~~~~gC~~~~~~~l~~~~ 220 (255)
||... ..|+....+...| ++||+ +++.+|+++++
T Consensus 65 CC~~~~~~C~~~~~~~~~y--------------------~~GC~------~~~~~~~~~~~ 99 (99)
T cd03166 65 CCINVTKGCGINFDEKVIH--------------------LEGCV------TKIEGWLKKNI 99 (99)
T ss_pred ccCcCCCCcccCCCccchH--------------------HhcCH------HHHHHHHHHhC
Confidence 99643 3565321111112 22266 99999999874
No 7
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=99.46 E-value=1.1e-14 Score=111.25 Aligned_cols=67 Identities=9% Similarity=0.238 Sum_probs=46.7
Q ss_pred heeEecCCCcc--cccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCC------CC
Q 025283 84 AFIITNNGSGH--SVAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAK------LT 155 (255)
Q Consensus 84 ~~~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~------~~ 155 (255)
+|+++++++.. ..+.+.+++|+.++.. ...+.+||.+|+ +|+|||+++ |+||.... ..
T Consensus 1 ~~v~r~~v~~~i~~~l~~~i~~y~~~~~~------~~~~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~ 66 (117)
T cd03160 1 IYFQRDKLKQEMGDIVEKVIQNYGGNPEN------KTAEEAWDYVQF----QLQCCGWTG----PQDWTDNSLIKNSSEP 66 (117)
T ss_pred CceeHHHHHHHHHHHHHHHHHhcCCCCCC------chHHHHHHHHHh----hCcccCCCC----chhHHhchhccCCCCC
Confidence 36777776552 3456667777543111 035789999999 999999999 99997431 13
Q ss_pred CCCCCCcCC
Q 025283 156 PIEAGCCRP 164 (255)
Q Consensus 156 ~vP~SCC~~ 164 (255)
.||.|||.+
T Consensus 67 ~vP~SCC~~ 75 (117)
T cd03160 67 LYPCSCCNS 75 (117)
T ss_pred CCCHhhhcC
Confidence 699999964
No 8
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=99.45 E-value=1.3e-14 Score=111.58 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=44.4
Q ss_pred eeEecCCCcc--cccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCC---------
Q 025283 85 FIITNNGSGH--SVAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAK--------- 153 (255)
Q Consensus 85 ~~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~--------- 153 (255)
|+++++++.. ..+.+.+++|+.++ ..+.+||.+|+ +|+|||+++ |+||....
T Consensus 1 ~v~r~~v~~~i~~~l~~~i~~y~~~~---------~~~~~~D~iQ~----~l~CCG~~~----~~DW~~~~~~~~~~~~~ 63 (121)
T cd03159 1 FVFKDWIKDQLTEFLNNNIRAYRDDI---------DLQNLIDFLQE----YWQCCGARG----PDDWNLNIYFNCTDSNP 63 (121)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccCH---------HHHHHHHHHHH----hccCCCCCC----hHHhcccccccccCCCC
Confidence 3566665542 34566777775322 25789999999 999999999 99996321
Q ss_pred ---CCCCCCCCcCC
Q 025283 154 ---LTPIEAGCCRP 164 (255)
Q Consensus 154 ---~~~vP~SCC~~ 164 (255)
...||.|||..
T Consensus 64 ~~~~~~vP~SCC~~ 77 (121)
T cd03159 64 SRERCGVPFSCCVK 77 (121)
T ss_pred CCCCCCCCcccccC
Confidence 12499999963
No 9
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=99.44 E-value=2.9e-14 Score=107.66 Aligned_cols=70 Identities=11% Similarity=0.238 Sum_probs=46.5
Q ss_pred eeEecCCCcc--cccchhhhh-cccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCC--------
Q 025283 85 FIITNNGSGH--SVAGLRYKE-YQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAK-------- 153 (255)
Q Consensus 85 ~~~~~~~~~~--~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~-------- 153 (255)
|+++++++.. ..+.+.+++ |+.++.. ..+.+||.+|+ +|+|||+++ |+||....
T Consensus 1 ~v~~~~~~~~i~~~l~~~i~~~y~~~~~~-------~~~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~ 65 (110)
T cd03155 1 YTYYQQLEDELKESLKRTMQENYGQSGEE-------ALTLTVDELQQ----EFKCCGSNN----YTDWQDSEWINSNEAN 65 (110)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHH----hCcCcCCCC----hhhhhhccccccCCCC
Confidence 3456665542 244566666 4432211 35789999999 999999999 99997531
Q ss_pred CCCCCCCCcCCC-CCCC
Q 025283 154 LTPIEAGCCRPP-FECG 169 (255)
Q Consensus 154 ~~~vP~SCC~~~-~~C~ 169 (255)
...||.|||+.. ..|+
T Consensus 66 ~~~vP~SCC~~~~~~c~ 82 (110)
T cd03155 66 GRLVPDSCCKTVVDRCG 82 (110)
T ss_pred CCCCCccccCCCCCCcc
Confidence 236999999753 2454
No 10
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=99.42 E-value=2.3e-14 Score=105.87 Aligned_cols=69 Identities=10% Similarity=0.310 Sum_probs=47.0
Q ss_pred eEecCCCc--ccccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhC-CCCCCCCCCc
Q 025283 86 IITNNGSG--HSVAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSA-KLTPIEAGCC 162 (255)
Q Consensus 86 ~~~~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~-~~~~vP~SCC 162 (255)
+++++++. ...+.+++++|+.++.+ ..+.+||.+|+ +|+|||+++ |+||... ....||.|||
T Consensus 2 v~r~~~~~~i~~~l~~~~~~y~~~~~~-------~~~~~~d~~Q~----~l~CCG~~~----~~Dw~~~~~~~~vP~SCC 66 (98)
T cd03165 2 VFREKVDLTAKDDLKEGLELYGTRNNR-------GLTNAWDITQT----EFRCCGVTN----YTDWYEVLGENRVPDSCC 66 (98)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCCcH-------HHHHHHHHHHH----hCcCcCCCC----hhHHHHhcCCCCCCHhhc
Confidence 45555543 12456667777543221 25789999999 999999999 9999753 1246999999
Q ss_pred CC-CCCCC
Q 025283 163 RP-PFECG 169 (255)
Q Consensus 163 ~~-~~~C~ 169 (255)
.+ +..|+
T Consensus 67 ~~~~~~C~ 74 (98)
T cd03165 67 QEDSQDCG 74 (98)
T ss_pred CCCccccc
Confidence 64 23564
No 11
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=99.42 E-value=3.1e-14 Score=102.82 Aligned_cols=83 Identities=13% Similarity=0.417 Sum_probs=58.3
Q ss_pred eEecCCCc--ccccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCCCCCCCCCCcC
Q 025283 86 IITNNGSG--HSVAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAKLTPIEAGCCR 163 (255)
Q Consensus 86 ~~~~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~~~~vP~SCC~ 163 (255)
+++++++. ...+.+++++|..++ ..+.+||.+|+ +|+|||+++ |+||. ..+|+|||.
T Consensus 2 v~~~~v~~~i~~~~~~~~~~y~~~~---------~~~~~~d~iQ~----~l~CCG~~~----~~Dw~----~~vP~SCC~ 60 (86)
T cd03164 2 VYEKKLNNYVKEGLTDSLEQYHKDN---------NTSEAWDMIQS----NLQCCGING----TTDWG----SGVPSSCCS 60 (86)
T ss_pred CchHHHHHHHHHHHHHHHHHhcCCc---------cHHHHHHHHHH----HhcCCCCCC----hhhhC----CCCChhhcC
Confidence 45665543 234456677775322 24789999999 999999999 99995 359999995
Q ss_pred CCCCCCCCccCCcccccCCCCCCCCcccccccCCCceeeeeCcchHHHHHHHHHHhHHHHH
Q 025283 164 PPFECGYPVVNASYYDLSFHPTSSNKDCKLYKNSRAVKCYNCDSCKAGVAQYMKIEWRVVA 224 (255)
Q Consensus 164 ~~~~C~~~~~~~~~~~~~~~g~~~~~~c~~~~~~~~~~C~~~~gC~~~~~~~l~~~~~~v~ 224 (255)
. .| ..|. +| |. +++.+++++++.+++
T Consensus 61 ~--~~-------~~~~---~G-----------------C~------~~~~~~~~~~~~iig 86 (86)
T cd03164 61 S--DT-------EYKV---EG-----------------CY------KKLKNWFESNFLYTG 86 (86)
T ss_pred C--CC-------cccc---cc-----------------HH------HHHHHHHHHHHHHhC
Confidence 3 12 1122 14 66 999999999988763
No 12
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=99.42 E-value=3.3e-14 Score=109.05 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=44.2
Q ss_pred eeEecCCCcc--cccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCC---------
Q 025283 85 FIITNNGSGH--SVAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAK--------- 153 (255)
Q Consensus 85 ~~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~--------- 153 (255)
|+++++++.. ..+.+.+++|..+. ..+.+||.+|+ +|+|||+++ |+||....
T Consensus 1 ~v~r~~v~~~i~~~l~~~i~~y~~~~---------~~~~~~d~lQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~ 63 (119)
T cd03158 1 FIFSNQTIDLLEENIRKAIVHYYDDL---------DLQNIIDFVQK----EFKCCGGDD----YRDWSKNMYFNCSSPNP 63 (119)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHccCH---------HHHHHHHHHHH----HccCCCCCC----hhhcccccccccCCCCC
Confidence 3456665542 34566677765321 36789999999 999999999 99996321
Q ss_pred -CCCCCCCCcCC
Q 025283 154 -LTPIEAGCCRP 164 (255)
Q Consensus 154 -~~~vP~SCC~~ 164 (255)
...||.|||++
T Consensus 64 ~~~~vP~SCC~~ 75 (119)
T cd03158 64 EACGVPYSCCIR 75 (119)
T ss_pred cCCCcCcCcccC
Confidence 12599999974
No 13
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=99.41 E-value=2.8e-14 Score=108.15 Aligned_cols=65 Identities=15% Similarity=0.386 Sum_probs=45.5
Q ss_pred heeEecCCCcc--cccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhC---------
Q 025283 84 AFIITNNGSGH--SVAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSA--------- 152 (255)
Q Consensus 84 ~~~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~--------- 152 (255)
+++++++++.. ..+.+.+++|..++. ..+.+||.+|+ +|+|||+++ |+||...
T Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~ 65 (114)
T cd03156 2 ALFFKKDLEDSFKNLLKNNYGNYNSTGD--------AITSTWNRVMI----ELKCCGVNG----PTDFVDSTSFFRQKNE 65 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccch--------HHHHHHHHHHh----cccCcCCCC----cHHHHhhhHHhccCCC
Confidence 45666665542 234555666643211 25889999999 999999999 9999653
Q ss_pred CCCCCCCCCcCC
Q 025283 153 KLTPIEAGCCRP 164 (255)
Q Consensus 153 ~~~~vP~SCC~~ 164 (255)
....||.|||++
T Consensus 66 ~~~~vP~SCC~~ 77 (114)
T cd03156 66 PNSPYPESCCKR 77 (114)
T ss_pred CCCcCCHHHcCc
Confidence 235799999974
No 14
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=99.38 E-value=8.3e-14 Score=107.04 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=41.5
Q ss_pred EecCCCcc--cccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCC----------C
Q 025283 87 ITNNGSGH--SVAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAK----------L 154 (255)
Q Consensus 87 ~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~----------~ 154 (255)
++++++.. ..+.+.+++|..++ ..+.+||.+|+ +|+|||+++ |+||.... .
T Consensus 3 ~r~~v~~~i~~~l~~~i~~y~~~~---------~~~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~~~ 65 (120)
T cd03167 3 LWGPLQDGLEHTLRLAIAHYQDDP---------DLRFLIDQVQL----GLQCCGASS----YQDWQQNLYFNCSSPGVQA 65 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCh---------hHHHHHHHHHH----hccCCCCCC----hHHhcccccccCCCCCCCC
Confidence 44444431 23456677665322 24579999999 999999999 99996421 1
Q ss_pred CCCCCCCcCC
Q 025283 155 TPIEAGCCRP 164 (255)
Q Consensus 155 ~~vP~SCC~~ 164 (255)
..||.|||++
T Consensus 66 ~~vP~SCC~~ 75 (120)
T cd03167 66 CSLPASCCID 75 (120)
T ss_pred CCCCcCccCC
Confidence 2599999964
No 15
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=99.35 E-value=7.2e-13 Score=98.98 Aligned_cols=59 Identities=14% Similarity=0.360 Sum_probs=43.1
Q ss_pred ccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCC-CCCCCCCCcCCC-CCCC
Q 025283 96 VAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAK-LTPIEAGCCRPP-FECG 169 (255)
Q Consensus 96 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~-~~~vP~SCC~~~-~~C~ 169 (255)
.+.+.|.+|+.++.. ..+.+||.+|+ +|+|||+++ |+||.... ...||.|||.+. ..|+
T Consensus 15 ~l~~~~~~Y~~~~~~-------~~~~~~D~iQ~----~l~CCG~~~----~~DW~~~~~~~~vP~SCC~~~~~~C~ 75 (103)
T cd03157 15 SLKSRMSNFGLQRYQ-------WLTHAWNSFQT----EFKCCGVIY----FTDWLEMTEMEWPPDSCCSNQYPGCA 75 (103)
T ss_pred HHHHHHHHHCCCCch-------hHHHHHHHHHH----hccCccCCC----hhHHhccCCCCCCCccccCCCCCCcC
Confidence 456677778654221 25779999999 999999999 99997532 234999999753 3575
No 16
>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her
Probab=99.29 E-value=5.9e-13 Score=104.70 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=48.6
Q ss_pred eEecCCCc--ccccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhC-----------
Q 025283 86 IITNNGSG--HSVAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSA----------- 152 (255)
Q Consensus 86 ~~~~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~----------- 152 (255)
+++++++. ...+.+.++.|+.++.+. +...+..||.+|+ +|+|||+++ |+||...
T Consensus 2 v~rd~l~~~L~~~L~~~i~~Y~~~~~~~----~~~~~~~~D~lQ~----~fkCCG~~~----y~DW~~~~w~~n~y~~~~ 69 (143)
T cd03162 2 IMRGSLEESLKTGLKNAMKFYKDTDTPG----RCFLKKTIDMLQI----EFQCCGNNG----YRDWFEIQWISNRYLDFS 69 (143)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCcccc----hhhHHHHHHHHHH----hccCCCCCC----hhhhhhhhhhcccccCCC
Confidence 45555543 234566777776443210 0025779999999 999999999 9999531
Q ss_pred ----------------CCCCCCCCCcCC--CCCCCCC
Q 025283 153 ----------------KLTPIEAGCCRP--PFECGYP 171 (255)
Q Consensus 153 ----------------~~~~vP~SCC~~--~~~C~~~ 171 (255)
....||.|||.+ |..|...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~vP~SCc~~~~~~~C~~~ 106 (143)
T cd03162 70 SKEVKDRIKSNVDGRYLTDGVPFSCCNPSSPRPCIQH 106 (143)
T ss_pred ccchhhhhhcccccccccCCcCCcccCCCCCCchhhh
Confidence 124799999975 4567643
No 17
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=99.23 E-value=1.9e-12 Score=93.51 Aligned_cols=50 Identities=18% Similarity=0.434 Sum_probs=38.0
Q ss_pred cchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCCCCCCCCCCcCC
Q 025283 97 AGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAKLTPIEAGCCRP 164 (255)
Q Consensus 97 ~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~~~~vP~SCC~~ 164 (255)
+.+.+++|..++ ..+.+||.+|. +|+|||++| |+||.... ..+|.|||..
T Consensus 15 ~~~~~~~~~~~~---------~~~~~~d~iq~----~l~CCG~~~----~~D~~~~~-~~vP~SCc~~ 64 (90)
T cd03127 15 LNDAWDEYYVDD---------DFQEAMDALQS----TFECCGVNG----PTDYLDLR-LLVPSSCCKG 64 (90)
T ss_pred HHHHHHHhcCCc---------hHHHHHHHHHH----hCcCcCCCC----hHHHccCC-CCCCHhhcCC
Confidence 455566654331 25789999999 999999999 99997532 4699999964
No 18
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=99.07 E-value=1.8e-11 Score=87.96 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=39.4
Q ss_pred eeEecCCCcc--cccchhhhhcccc-cchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCCCCCCCCCC
Q 025283 85 FIITNNGSGH--SVAGLRYKEYQLK-DYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAKLTPIEAGC 161 (255)
Q Consensus 85 ~~~~~~~~~~--~~~~~~~~~y~~~-~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~~~~vP~SC 161 (255)
|+++++++.. ..+.+.+++|..+ +. ..+.+||.+|+ +|+|||+++ |.|| .+|+||
T Consensus 1 ~v~r~~v~~~i~~~~~~~~~~y~~~~~~--------~~~~~~d~iQ~----~l~CCG~~~----~~D~------~vP~SC 58 (84)
T cd03152 1 FSNKDKVVKEVQTFYRQTYAKYKQSRDP--------PLKETLKAIHF----ALDCCGPTG----GLEQ------FVTDTC 58 (84)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhccCCH--------HHHHHHHHHHH----HHcCCCCCC----Cccc------ccCCCC
Confidence 3456665442 2345667777543 21 13468999999 999999999 9999 399998
Q ss_pred c
Q 025283 162 C 162 (255)
Q Consensus 162 C 162 (255)
+
T Consensus 59 ~ 59 (84)
T cd03152 59 P 59 (84)
T ss_pred C
Confidence 4
No 19
>cd03151 CD81_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD81_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD81, also referred to as Target for anti-proliferative antigen-1, TAPA-1, is found in virtually all tissues, may be involved in regulation of cell growth and has been described as a member of the CD19/CD21/Leu-13 signal transduction complex identified on B cells (the B-Cell co-receptor).
Probab=98.51 E-value=1.5e-08 Score=72.84 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=39.8
Q ss_pred eEecCCCcc--cccchhhhhcccccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCCCCCCCCCCc
Q 025283 86 IITNNGSGH--SVAGLRYKEYQLKDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAKLTPIEAGCC 162 (255)
Q Consensus 86 ~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~~~~vP~SCC 162 (255)
++++++... ..+.+.+++|..+... ..+.+||.+|+ .|+|||.+| |+|+.. ..+|++|.
T Consensus 2 v~r~~v~~~i~~~l~~~~~~y~~~~~~-------~~~~~~d~iQ~----~l~CCG~~~----~~d~~~---~~~~~~C~ 62 (84)
T cd03151 2 INKDQIIKEVQNFYDSAYQDAVTDTRS-------KGTAVLKTFHS----TLDCCGKGN----LTALLS---LLSTDLCP 62 (84)
T ss_pred CcHHHHHHHHHHHHHHHHHHHccCcch-------hHHHHHHHHHH----hcCCCCCCC----CcchHH---HHHhCCCC
Confidence 455554432 2345666676442111 24678999999 999999999 988865 35888984
No 20
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=86.18 E-value=6.1 Score=32.58 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhc-ccCcchhhh-hhhhHHHHHHHHHHHHHHHH
Q 025283 9 QLLAITIIIFGVWMS-THHDNCRRS-LTLPVLGLGALIFIISIIGF 52 (255)
Q Consensus 9 ~l~G~~ll~~Giw~~-~~~~~~~~~-~~~~li~~G~~~~~i~~lG~ 52 (255)
+++|+.++.+|..-+ ..++++.+. .+...-.+|+.++++|.++.
T Consensus 13 LliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l~ 58 (197)
T PRK12585 13 ILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVGY 58 (197)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHHH
Confidence 588888888888888 655455432 12223445555555554443
No 21
>PF14967 FAM70: FAM70 protein
Probab=85.06 E-value=0.58 Score=40.94 Aligned_cols=75 Identities=16% Similarity=0.319 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHH-hcCc-hHHHHHHHHHHHHHHHHHH
Q 025283 3 IYISNVQLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLGAL-KNNT-ILLWIYLIMLCLVLVAILV 79 (255)
Q Consensus 3 l~~~N~~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~ga~-~es~-~lL~~y~~ll~vl~~~ei~ 79 (255)
.|+..++++++.++.+|+..- .-++ ...-..||-|.+| +-+|+|.+|+. -||| -||..-++++.+-+++-+.
T Consensus 29 w~~~~lL~vS~~iltvGLaatTRTeN-VtVgGYyPGIILg----FGSFLGIiGi~LvENrRqmLvAaIVFiSfGvVaAFc 103 (327)
T PF14967_consen 29 WFVVSLLVVSLLILTVGLAATTRTEN-VTVGGYYPGIILG----FGSFLGIIGIHLVENRRQMLVAAIVFISFGVVAAFC 103 (327)
T ss_pred eeeHHHHHHHHHHHHhhhheeeeecc-eEecccccceEEe----ehhHHHHhhhhhhhcCceEEEEEEEEEecchHHHHH
Confidence 345556889999999998877 4432 1111124533222 33667777776 3454 4444444444444444333
Q ss_pred HHh
Q 025283 80 FTV 82 (255)
Q Consensus 80 ~~i 82 (255)
.+|
T Consensus 104 CaI 106 (327)
T PF14967_consen 104 CAI 106 (327)
T ss_pred HHH
Confidence 333
No 22
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=78.41 E-value=5.2 Score=37.49 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=32.0
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 025283 35 LP-VLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCLVLV 75 (255)
Q Consensus 35 ~~-li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~vl~~ 75 (255)
|+ .+++=.+.+++.++++.|.+|.|||+++.|.++=++.++
T Consensus 210 W~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lv 251 (526)
T KOG4433|consen 210 WLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALV 251 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 44 455556888999999999999999999998776544444
No 23
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=78.14 E-value=0.69 Score=36.00 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 025283 9 QLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCLVLVAIL 78 (255)
Q Consensus 9 ~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~vl~~~ei 78 (255)
.++|+..+.+|+.+. ..... ......|+ -.|+..++.|.+|.....|.+|+++..+.++-++-++.-+
T Consensus 7 I~lGi~~i~lGi~~~~~~~~~-~~~~~~pi-W~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~~~a~ 75 (150)
T PF04103_consen 7 ILLGILSIVLGIIALSLSSSV-LVYIGYPI-WGGIFFIISGILGIASEKKPTKCLVIASLVLSIVSALLAL 75 (150)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHH-HHHhcccH-HHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHH
Confidence 478888889998888 54321 11112343 4488889999999999999999998888877776665533
No 24
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=74.49 E-value=6.9 Score=29.63 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHH
Q 025283 9 QLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISII 50 (255)
Q Consensus 9 ~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~l 50 (255)
+++|++++.+|..+. .+-+ ...--.++++++|+++++=|+-
T Consensus 51 li~G~~li~~g~l~~~~~i~-~~~~~~~~llilG~L~fIPG~Y 92 (115)
T PF05915_consen 51 LIFGTVLIIIGLLLFFGHID-GDRDRGWALLILGILCFIPGFY 92 (115)
T ss_pred HHHHHHHHHHHHHHHhcccC-CCCcccchHHHHHHHHHhccHH
Confidence 688888888888887 6521 1111247788888888775543
No 25
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=74.05 E-value=8.9 Score=35.71 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 025283 38 LGLGALIFIISIIGFLGALKNNTILLWIYLIMLCL 72 (255)
Q Consensus 38 i~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~v 72 (255)
+++=++.+++++++++|..|.|||.+.++.++=++
T Consensus 213 l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l 247 (418)
T cd07912 213 LGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLF 247 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34444677888999999999999999998544333
No 26
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=71.98 E-value=20 Score=29.19 Aligned_cols=65 Identities=15% Similarity=0.307 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhc-cc-Ccchhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCch-------------HHHHHHHHHHH
Q 025283 12 AITIIIFGVWMS-TH-HDNCRRSL----TLPVLGLGALIFIISIIGFLGALKNNTI-------------LLWIYLIMLCL 72 (255)
Q Consensus 12 G~~ll~~Giw~~-~~-~~~~~~~~----~~~li~~G~~~~~i~~lG~~ga~~es~~-------------lL~~y~~ll~v 72 (255)
+++++++|+.+. -. ...+..+. ...+++.++++++++++-.....+..+. -...|+++++.
T Consensus 4 ~liL~~~~~l~~~l~~sG~i~~YI~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~~~~~h~h~~~~~~~~~~y~l~~iP 83 (182)
T PF09323_consen 4 FLILLGFGILLFYLILSGKILLYIHPRYIPLLYFAAILLLILAIVQLWRWFRPKRRKEDCHDHGHSKSKKLWSYFLFLIP 83 (182)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHH
Confidence 345566665555 21 22122221 2336777778888888888888776554 55666666655
Q ss_pred HHHH
Q 025283 73 VLVA 76 (255)
Q Consensus 73 l~~~ 76 (255)
+++.
T Consensus 84 ll~g 87 (182)
T PF09323_consen 84 LLIG 87 (182)
T ss_pred HHHH
Confidence 5443
No 27
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=63.25 E-value=19 Score=23.97 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 025283 9 QLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLGAL 56 (255)
Q Consensus 9 ~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~ga~ 56 (255)
.+.|+++++.|+... ... .+.+.++|+..+..++.|+|...
T Consensus 14 ~~~G~~l~~~~~~~~~~~~-------~~~~~~~g~~ll~~g~~g~Cp~~ 55 (66)
T PF11127_consen 14 IIIGIVLLALGLLGLFGSW-------GWLLGFVGAMLLVTGITGFCPLY 55 (66)
T ss_pred HHHHHHHHHHHHHhcccch-------HHHHHHHHHHHHHHHHHCcCHhH
Confidence 366666666665544 221 45677788888888888887653
No 28
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=59.53 E-value=47 Score=21.76 Aligned_cols=47 Identities=19% Similarity=0.399 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCc
Q 025283 10 LLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLGALKNNT 60 (255)
Q Consensus 10 l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~ga~~es~ 60 (255)
+.|+..+.+|+++. .++.. .......+|..+++.|..-...+.++++
T Consensus 1 i~Gil~iv~Gi~~l~~p~~~----~~~~~~i~g~~~i~~Gi~~l~~~~~~~~ 48 (72)
T PF03729_consen 1 ISGILFIVLGILLLFNPDAS----LAALAIILGIWLIISGIFQLISAFRRRK 48 (72)
T ss_pred CHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36889999999999 76531 2344688888999999998888888543
No 29
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=58.28 E-value=26 Score=28.48 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 025283 36 PVLGLGALIFIISIIG 51 (255)
Q Consensus 36 ~li~~G~~~~~i~~lG 51 (255)
..+++|+++++.|+.+
T Consensus 10 ~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 10 ILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555544444444
No 30
>PRK05715 NADH:ubiquinone oxidoreductase subunit K; Validated
Probab=56.11 E-value=51 Score=23.90 Aligned_cols=69 Identities=10% Similarity=0.156 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh
Q 025283 9 QLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCLVLVAILVFTV 82 (255)
Q Consensus 9 ~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~vl~~~ei~~~i 82 (255)
.+++..++.+|+|.. .+++........-++..|+.+.+++.....+ + ..=..+.+..+++-+.|.+.+.
T Consensus 8 ~~~~~~lf~iGl~~~~~~~~li~~Ll~lE~m~~~v~l~~~~~~~~~~----~-~~~~~l~l~~ivi~~~E~algL 77 (100)
T PRK05715 8 LILAAILFCIGLVGLLLRRNAIVVLMSIELMLNAVNLNFVAFSSYLG----D-LDGQVFAFFVITVAAAEAAIGL 77 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C-cchHHHHHHHHHHHHHHHHHHH
Confidence 678888999999988 6332222223344667776666666554431 1 1112344445555566766665
No 31
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=53.71 E-value=25 Score=22.33 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=15.3
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 025283 32 SLTLPVLGLGALIFIISIIG 51 (255)
Q Consensus 32 ~~~~~li~~G~~~~~i~~lG 51 (255)
..+.|.+.+|+++++.+..+
T Consensus 23 i~~lP~~~~Gi~Lii~g~v~ 42 (49)
T PF11384_consen 23 IQALPAILIGIGLIISGGVG 42 (49)
T ss_pred hhccHHHHHhHHHHhhhhhh
Confidence 34688899999888877665
No 32
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=52.02 E-value=6.5 Score=36.48 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 025283 42 ALIFIISIIGFLGALKNNTILLWIYLIMLCL 72 (255)
Q Consensus 42 ~~~~~i~~lG~~ga~~es~~lL~~y~~ll~v 72 (255)
++.+++.+++++|.+|+|||.+..+.++-++
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~gll 224 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVLGLL 224 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeccHH
Confidence 4677789999999999999998766554333
No 33
>KOG3646 consensus Acetylcholine receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.67 E-value=39 Score=31.76 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhc-ccCcchhhhhh--hhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 025283 2 LIYISNVQLLAITIIIFGVWMS-THHDNCRRSLT--LPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCLVLVAIL 78 (255)
Q Consensus 2 ll~~~N~~l~G~~ll~~Giw~~-~~~~~~~~~~~--~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~vl~~~ei 78 (255)
+.|.||+.+-.+++....+-.. -+....++... .+++.+-.++.++|- ...+-.|+..++..||-..++++.+-+
T Consensus 236 LyYgfNlIiP~lLIs~m~lLgFtlppD~gEKitL~iTilLsvc~FL~mvse--~~PpTSeaVPllg~fFsc~m~iv~~Sv 313 (486)
T KOG3646|consen 236 LYYGFNLIIPSLLISLMSLLGFTLPPDAGEKITLQITILLSVCFFLTMVSE--MTPPTSEAVPLLGAFFSCCMFIVAASV 313 (486)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccCccccceeeeeeehHHHHHHHHHHHHh--hcCCccccccHHHHHHHHHHHHHHhhh
Confidence 4688998443333322222222 11111223221 223333344444443 377888999999999999999999888
Q ss_pred HHHhhheeEecC
Q 025283 79 VFTVLAFIITNN 90 (255)
Q Consensus 79 ~~~i~~~~~~~~ 90 (255)
++.++..-++..
T Consensus 314 vfTv~vLn~h~R 325 (486)
T KOG3646|consen 314 VFTVIVLNLHHR 325 (486)
T ss_pred eeEEEEEeeecc
Confidence 888766655544
No 34
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=51.56 E-value=60 Score=24.38 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 025283 9 QLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLG 54 (255)
Q Consensus 9 ~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~g 54 (255)
++.+.+++++|+|.. ...+........-++.-|+.++++++-...|
T Consensus 6 ~~~~~~Lf~iGlygil~rrnli~~liglei~~~av~L~lv~~g~~~~ 52 (114)
T PRK08389 6 YFGAIALVLIGLYGVLVKKNLLKIIIGLDIMETGVNLLLISIGYVSG 52 (114)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 677889999999988 6544333334555778888787777755544
No 35
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=50.99 E-value=44 Score=32.79 Aligned_cols=55 Identities=22% Similarity=0.466 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 025283 9 QLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCLVL 74 (255)
Q Consensus 9 ~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~vl~ 74 (255)
.++|+.+++-|+|+. -..+. -.+..|+.+++.+++ ..+++|--|..|.++++...
T Consensus 11 ~~~gl~l~~gg~~l~~lggs~-------yy~iagl~~l~~~~l----l~~~k~aal~lya~~~~~t~ 66 (773)
T COG4993 11 ALCGLALLIGGIWLVALGGSW-------YYLIAGLVLLLSAWL----LLRRKRAALWLYALVLLGTL 66 (773)
T ss_pred HHHHHHHhccceeEEeeCCch-------HHHHHHHHHHHHHHH----HhccchhHHHHHHHHHHHHh
Confidence 588888888888877 44321 123344444444444 45666677777766555433
No 36
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=49.50 E-value=22 Score=31.20 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 025283 220 WRVVAIFNLILFVVLSIVYFVGCCARRNAVRSR 252 (255)
Q Consensus 220 ~~~v~~~~~~~~~lqi~~~~~a~~l~~~~~~~~ 252 (255)
...-++.+++++++-++.+++=++|+||.+++-
T Consensus 258 F~Pcgiaalvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 258 FLPYGIAALVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334455666777777777888889998887654
No 37
>PTZ00370 STEVOR; Provisional
Probab=48.99 E-value=22 Score=31.21 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=26.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 025283 215 YMKIEWRVVAIFNLILFVVLSIVYFVGCCARRNAVRSR 252 (255)
Q Consensus 215 ~l~~~~~~v~~~~~~~~~lqi~~~~~a~~l~~~~~~~~ 252 (255)
........-++.+++++++-++.+++-++|+||.+++-
T Consensus 249 aAsaaF~Pygiaalvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 249 AASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 33334445566667777777788888889998877653
No 38
>PF00420 Oxidored_q2: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; InterPro: IPR001133 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents NADH:ubiquinone oxidoreductase, chain 4L, as well as NADH-quinone oxidoreductase (1.6.99.5 from EC). In eukaryotes, these enzymes are usually found in either mitochondria or chloroplasts as part of the respiratory-chain NADH dehydrogenase (also known as complex I or NADH-ubiquinone oxidoreductase), an oligomeric enzymatic complex []. However, they are also found in bacteria [] and archaea [] where they are annotated as NuoK subunit.; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0042773 ATP synthesis coupled electron transport, 0055114 oxidation-reduction process; PDB: 3RKO_G.
Probab=47.32 E-value=1e+02 Score=21.87 Aligned_cols=72 Identities=14% Similarity=0.263 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhhhee
Q 025283 10 LLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCLVLVAILVFTVLAFI 86 (255)
Q Consensus 10 l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~vl~~~ei~~~i~~~~ 86 (255)
+.+..++.+|.+.. .+.+........-++..|+.+..+...... +...-..+....+++-+.|.+.+....+
T Consensus 4 ~~~~~lf~~gl~~~~~~~~ll~~Li~lE~m~~~v~l~~~~~~~~~-----~~~~~~~~~l~~l~~~v~e~algLsllv 76 (95)
T PF00420_consen 4 FVAFFLFFIGLYGILTRRHLLRILISLELMMLGVFLLLVFMGYFS-----NDPIPQALILTFLVISVCESALGLSLLV 76 (95)
T ss_dssp HHHHHHHHHHHHHHHH--BHHHHHHHHHHHHHHHHHHHHHHHHHT-----T-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888 633222222334466666666655554433 2222344444445555577766664433
No 39
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=47.07 E-value=20 Score=30.61 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCchH
Q 025283 33 LTLPVLGLGALIFIISIIGFLGALKNNTIL 62 (255)
Q Consensus 33 ~~~~li~~G~~~~~i~~lG~~ga~~es~~l 62 (255)
+.++++++|.++++.++++++-.-|-.+.+
T Consensus 225 Lwwi~~vlG~ll~lr~~i~YikVrrm~~~~ 254 (262)
T KOG4812|consen 225 LWWIFLVLGLLLFLRGFINYIKVRRMEEKY 254 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhHHHHH
Confidence 467799999999999999998876655543
No 40
>COG2245 Predicted membrane protein [Function unknown]
Probab=44.09 E-value=1.8e+02 Score=23.75 Aligned_cols=16 Identities=13% Similarity=0.586 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhc-cc
Q 025283 10 LLAITIIIFGVWMS-TH 25 (255)
Q Consensus 10 l~G~~ll~~Giw~~-~~ 25 (255)
+.|.+++-+|+++. +.
T Consensus 32 lVG~VLvlval~~iS~~ 48 (182)
T COG2245 32 LVGLVLVLVALYMISKQ 48 (182)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78889999999999 54
No 41
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=42.34 E-value=95 Score=25.56 Aligned_cols=48 Identities=27% Similarity=0.395 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCc
Q 025283 9 QLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLGALKNNT 60 (255)
Q Consensus 9 ~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~ga~~es~ 60 (255)
++.|++++..|++.. ++... ......++|.++++.|.+=..++..+++
T Consensus 23 l~~Gv~lii~Gl~~l~~P~~s----~~~l~~~vG~~lli~Gi~~ii~af~~r~ 71 (185)
T COG3247 23 LLLGVLLIILGLLALFNPAIS----TVALVYVVGILLLISGIIEIISAFGNRS 71 (185)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 488999999999999 66421 1234677888888888887777776655
No 42
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=40.69 E-value=1.2e+02 Score=25.17 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhc-ccCcc----hhh---h--hhhhHHHHHHHHHHHHHHHHHHHHhc
Q 025283 10 LLAITIIIFGVWMS-THHDN----CRR---S--LTLPVLGLGALIFIISIIGFLGALKN 58 (255)
Q Consensus 10 l~G~~ll~~Giw~~-~~~~~----~~~---~--~~~~li~~G~~~~~i~~lG~~ga~~e 58 (255)
++|++..++|+.-. +.... +++ . .+.++.+.|..+++.+..|.+....+
T Consensus 7 v~g~~~~~~gl~G~~~~~yAllldye~g~~v~N~S~l~~vyG~~l~~~~~~~~~~~~~~ 65 (196)
T PF06770_consen 7 VVGSAAFVFGLMGIVDERYALLLDYENGSSVFNCSGLVFVYGPLLLLVTTWGVYKITSK 65 (196)
T ss_pred HHHHHHHHHHhhheecCceeeEEEecCCCccEeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888888887 65421 121 1 24558999999999999998877754
No 43
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=40.48 E-value=1.3e+02 Score=24.28 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 025283 37 VLGLGALIF 45 (255)
Q Consensus 37 li~~G~~~~ 45 (255)
+++.|++.+
T Consensus 18 li~~gI~~L 26 (191)
T PF04156_consen 18 LIASGIAAL 26 (191)
T ss_pred HHHHHHHHH
Confidence 334444433
No 44
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=39.57 E-value=34 Score=29.39 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhheeE
Q 025283 61 ILLWIYLIMLCLVLVAILVFTVLAFII 87 (255)
Q Consensus 61 ~lL~~y~~ll~vl~~~ei~~~i~~~~~ 87 (255)
..|.+|.++|++++++-+++.+|.+--
T Consensus 35 rcLY~fvLlL~i~ivvNLalTiWIlkV 61 (292)
T KOG3950|consen 35 RCLYTFVLLLMILIVVNLALTIWILKV 61 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357999999999999999999987644
No 45
>PRK07375 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=39.49 E-value=1.6e+02 Score=21.99 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 025283 9 QLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLG 54 (255)
Q Consensus 9 ~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~g 54 (255)
++.+.+++.+|+|.. .+.+........-++.-|+.++++++-...|
T Consensus 6 ~~~~~~Lf~iG~~gll~~rnli~~ligleim~~avnL~lv~~g~~~~ 52 (112)
T PRK07375 6 YALAIALLVIGLYGLIFKRNLLKKIIGLDVFQTGVNLFYIAIGYRSG 52 (112)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 567788899999977 6543333333455777777777777655443
No 46
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=39.11 E-value=1.3e+02 Score=22.69 Aligned_cols=38 Identities=21% Similarity=0.566 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 025283 33 LTLPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCLVLV 75 (255)
Q Consensus 33 ~~~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~vl~~ 75 (255)
.+..++++|.+++.+|++ ++.++.++.++.++=++.++
T Consensus 14 ~al~lif~g~~vmy~gi~-----f~~~~~im~ifmllG~L~~l 51 (114)
T PF11023_consen 14 FALSLIFIGMIVMYIGIF-----FKASPIIMVIFMLLGLLAIL 51 (114)
T ss_pred HHHHHHHHHHHHHhhhhh-----hcccHHHHHHHHHHHHHHHH
Confidence 356688899888887643 36666666655544433333
No 47
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=38.06 E-value=1.5e+02 Score=24.69 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 025283 34 TLPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCLVLVAIL 78 (255)
Q Consensus 34 ~~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~vl~~~ei 78 (255)
.+.-|..-.+-+++-++|..||..-++..+..|.+-..+=+.--+
T Consensus 33 qWaPIl~NF~hIi~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wNv 77 (200)
T PF05640_consen 33 QWAPILANFLHIIFVILGLFGAIQYRPRYIIVYAVWTALWVTWNV 77 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHhH
Confidence 345566666677777899999999999999999977666554433
No 48
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=36.46 E-value=1.8e+02 Score=22.57 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=19.6
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHhhheeE
Q 025283 57 KNNTILLWIYLIMLCLVLVAILVFTVLAFII 87 (255)
Q Consensus 57 ~es~~lL~~y~~ll~vl~~~ei~~~i~~~~~ 87 (255)
.+.+.+...|++.+++++.+-+..+++.+..
T Consensus 52 s~~~pl~~~~~~~~~~v~~~~~~~avv~~~~ 82 (237)
T PF02932_consen 52 SYAKPLDGWYFICTMFVFSASLEFAVVVYNI 82 (237)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhccccchhhhHHHHhhhhhhhh
Confidence 4457888888877777766555555444433
No 49
>PRK10209 acid-resistance membrane protein; Provisional
Probab=36.43 E-value=2.2e+02 Score=23.29 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 025283 9 QLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLGALKN 58 (255)
Q Consensus 9 ~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~ga~~e 58 (255)
++.|+..+..|+... ++... .....+.+|..+++-|+....++.+.
T Consensus 25 li~Gil~ivlGi~~l~~P~~~----~~~~~~~~g~~ll~~Gi~~l~~~~~~ 71 (190)
T PRK10209 25 QIIAVLLFIGGLLCLSFPFVS----GDALSTVVGILLICSGIALIVGLFAN 71 (190)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478999999999999 76421 11234667888888888877766543
No 50
>PF15125 TMEM238: TMEM238 protein family
Probab=36.19 E-value=1.4e+02 Score=20.16 Aligned_cols=36 Identities=17% Similarity=0.420 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHH
Q 025283 10 LLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFL 53 (255)
Q Consensus 10 l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~ 53 (255)
++|.+++.+|++.- +. ...++-+|++++..|++++.
T Consensus 15 ~vGl~~Ll~GiFa~l~f--------~D~lvY~GaliiflSL~~Wv 51 (65)
T PF15125_consen 15 VVGLVMLLTGIFAPLDF--------YDFLVYTGALIIFLSLLWWV 51 (65)
T ss_pred HhhHHHHHHHHhcchhH--------HHHHHHHhHHHHHHHHHHHH
Confidence 55666666665554 22 22345566666666666543
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.92 E-value=59 Score=24.89 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=4.6
Q ss_pred HHHHHhhhcccc
Q 025283 239 FVGCCARRNAVR 250 (255)
Q Consensus 239 ~~a~~l~~~~~~ 250 (255)
++++++.|++||
T Consensus 83 li~y~irR~~Kk 94 (122)
T PF01102_consen 83 LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHS--
T ss_pred HHHHHHHHHhcc
Confidence 444444444444
No 52
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=35.27 E-value=1.9e+02 Score=22.07 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025283 37 VLGLGALIFIISIIGFLG 54 (255)
Q Consensus 37 li~~G~~~~~i~~lG~~g 54 (255)
..++|++++++|++....
T Consensus 41 ~~~ig~vi~~~~li~~~~ 58 (124)
T PF14387_consen 41 VTGIGAVIAVLSLIMLFV 58 (124)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444333
No 53
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=34.78 E-value=13 Score=32.87 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 025283 220 WRVVAIFNLILFVVLSIVYFVGCCARRNAVR 250 (255)
Q Consensus 220 ~~~v~~~~~~~~~lqi~~~~~a~~l~~~~~~ 250 (255)
+....+.+++++++-+++.+++|+++|+.|+
T Consensus 145 yL~T~IpaVVI~~iLLIA~iIa~icyrrkR~ 175 (290)
T PF05454_consen 145 YLHTFIPAVVIAAILLIAGIIACICYRRKRK 175 (290)
T ss_dssp -------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3333446677777777788888888874433
No 54
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=34.25 E-value=75 Score=21.02 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 025283 35 LPVLGLGALIFIISIIG 51 (255)
Q Consensus 35 ~~li~~G~~~~~i~~lG 51 (255)
...++.|++..++++++
T Consensus 42 ~~~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 42 IWYLIGGAVAVIVGLFL 58 (59)
T ss_pred HHHHHhHHHHHHHHHhh
Confidence 44788888888888764
No 55
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=32.56 E-value=85 Score=18.38 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 025283 35 LPVLGLGALIFIISIIGFLGALKN 58 (255)
Q Consensus 35 ~~li~~G~~~~~i~~lG~~ga~~e 58 (255)
+.-+++|.+++++++-|...+.++
T Consensus 10 W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 10 WLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456788888888888888877653
No 56
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=31.53 E-value=1.2e+02 Score=24.48 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHH
Q 025283 9 QLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIG 51 (255)
Q Consensus 9 ~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG 51 (255)
.+...+++++|+|+. .++ .....+...++..|+.+++++.-|
T Consensus 8 ~i~~gvL~~~G~Ylll~rn-Lir~iiGl~il~~~vnLlii~~G~ 50 (163)
T PRK07946 8 LVAIGVLTSAGVYLLLERS-LTRMLLGLLLIGNGVNLLILTAGG 50 (163)
T ss_pred HHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466677789999988 754 233334455777777766666554
No 57
>cd03153 PHEMX_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), PHEMX_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Phemx (pan hematopoietic expression) or TSSC6 may play a role in hematopoietic cell function.
Probab=31.22 E-value=20 Score=25.50 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=11.9
Q ss_pred hhhhhhhccCCCcCCCcc
Q 025283 124 KRLKSCLVKSEDCNNLSK 141 (255)
Q Consensus 124 d~iQ~~~~~~~~CCG~~~ 141 (255)
..||. .|.|||..|
T Consensus 35 ~~iqd----~FlccGk~S 48 (87)
T cd03153 35 AAIQD----TFLCCGKKS 48 (87)
T ss_pred hcccc----hhhhccCCC
Confidence 55676 999999999
No 58
>CHL00015 ndhE NADH dehydrogenase subunit 4L
Probab=30.18 E-value=2.2e+02 Score=20.69 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh
Q 025283 8 VQLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCLVLVAILVFTV 82 (255)
Q Consensus 8 ~~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~vl~~~ei~~~i 82 (255)
..+++..+..+|++.. ...+........-++..|+.+.++++....+...... ..+....+++-+.|.+.+.
T Consensus 6 ~~~~~~~lf~iGl~g~l~~rnll~~LlslE~m~~~v~l~~~~~~~~~~~~~~~~---~~l~l~~ivia~~E~algL 78 (101)
T CHL00015 6 VLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKG---DIFSIFVIAIAAAEAAIGL 78 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch---HHHHHHHHHHHHHHHHHHH
Confidence 3577888889999999 6433222233445777887777777766543210001 2344444455556666665
No 59
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=30.10 E-value=24 Score=34.46 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 025283 218 IEWRVVAIFNLILFVVLSIVYFVGCCARRNAVRSRS 253 (255)
Q Consensus 218 ~~~~~v~~~~~~~~~lqi~~~~~a~~l~~~~~~~~~ 253 (255)
.++++++++...++++-++.++++++|+|+-|.+.+
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~eFq 302 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYWKLCRKNKLEFQ 302 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHHHHhcccccCCC
Confidence 567787888889999999999999999987665543
No 60
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=29.19 E-value=1.3e+02 Score=17.97 Aligned_cols=8 Identities=0% Similarity=-0.081 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 025283 225 IFNLILFV 232 (255)
Q Consensus 225 ~~~~~~~~ 232 (255)
++..++++
T Consensus 11 ~V~vg~~i 18 (38)
T PF02439_consen 11 AVVVGMAI 18 (38)
T ss_pred HHHHHHHH
Confidence 33333333
No 61
>PRK02935 hypothetical protein; Provisional
Probab=26.75 E-value=2.7e+02 Score=20.73 Aligned_cols=34 Identities=18% Similarity=0.528 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 025283 34 TLPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCL 72 (255)
Q Consensus 34 ~~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~v 72 (255)
+..++++|.+++-+|++ +|+++.+..+|.++=++
T Consensus 16 aL~lvfiG~~vMy~Gif-----f~~~~~~m~ifm~~G~l 49 (110)
T PRK02935 16 ALSLVFIGFIVMYLGIF-----FRESIIIMTIFMLLGFL 49 (110)
T ss_pred HHHHHHHHHHHHHHHHH-----hcccHHHHHHHHHHHHH
Confidence 55688999998888855 37777776666553333
No 62
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=26.73 E-value=30 Score=26.22 Aligned_cols=14 Identities=14% Similarity=0.579 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhc
Q 025283 10 LLAITIIIFGVWMS 23 (255)
Q Consensus 10 l~G~~ll~~Giw~~ 23 (255)
++|+.++++|..+.
T Consensus 59 ~fg~Lli~lg~fl~ 72 (124)
T KOG4753|consen 59 VFGLLLIGLGFFLA 72 (124)
T ss_pred HHHHHHHHHHHHhe
Confidence 44444444444444
No 63
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=26.04 E-value=2.9e+02 Score=21.19 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCchHHHH
Q 025283 37 VLGLGALIFIISII-GFLGALKNNTILLWI 65 (255)
Q Consensus 37 li~~G~~~~~i~~l-G~~ga~~es~~lL~~ 65 (255)
+..+|+++.+++++ +.++..++++.+...
T Consensus 74 ~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (172)
T PF13903_consen 74 FLILGLLLLLFAFVFALIGFCKRSYTLYLF 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 55666666665555 777888877754444
No 64
>PRK08388 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=25.94 E-value=1.5e+02 Score=22.45 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHH
Q 025283 9 QLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISII 50 (255)
Q Consensus 9 ~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~l 50 (255)
.+.+.+++++|+|.. ...+........-++.-|+.++++++-
T Consensus 6 ~~~~~~Lf~iGlygil~~rnlir~ligl~im~~av~L~lv~~g 48 (119)
T PRK08388 6 FITAFLMIALGIYAFLYKRNLIKLILALDLIDSGIHLLLISLG 48 (119)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999987 654333333445577777766666653
No 65
>PRK10209 acid-resistance membrane protein; Provisional
Probab=25.59 E-value=3e+02 Score=22.40 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Q 025283 37 VLGLGALIFIISIIGFLGALKNNT 60 (255)
Q Consensus 37 li~~G~~~~~i~~lG~~ga~~es~ 60 (255)
.+.+|+..++.|+.....+.+.++
T Consensus 108 ~~l~g~~~iv~Gi~~i~~a~~~~~ 131 (190)
T PRK10209 108 AAFIAGLFCVGGIIRLMSGYKQRK 131 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc
Confidence 356777778888888877776543
No 66
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=25.24 E-value=1.8e+02 Score=19.85 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.4
Q ss_pred HH--HHHHHHHHHHHHHhc
Q 025283 7 NV--QLLAITIIIFGVWMS 23 (255)
Q Consensus 7 N~--~l~G~~ll~~Giw~~ 23 (255)
|. +..|++++++|-++.
T Consensus 7 Nyill~iG~~vIilGfilM 25 (69)
T PF11297_consen 7 NYILLAIGIAVIILGFILM 25 (69)
T ss_pred HHHHHHHHHHHHHHHHHhe
Confidence 55 688999999998888
No 67
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=24.85 E-value=1.1e+02 Score=21.60 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 025283 36 PVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCLVLV 75 (255)
Q Consensus 36 ~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~vl~~ 75 (255)
.++++|++.++++++ .|++..||--..-+.==-=++=+
T Consensus 5 sLiAlall~~IvsLi--L~~i~~sr~~~~~~l~qqEvLnv 42 (82)
T PF11773_consen 5 SLIALALLATIVSLI--LGQIQQSRQEMAEELQQQEVLNV 42 (82)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999998 89999998877665433333333
No 68
>KOG4556 consensus Predicted membrane protein [Function unknown]
Probab=24.77 E-value=3.2e+02 Score=22.38 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 025283 34 TLPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCLVLVAI 77 (255)
Q Consensus 34 ~~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~vl~~~e 77 (255)
.+.-|..-.+-+++-++|.+|+....+.++.+|..-+.+-+-.-
T Consensus 30 qWapilanFvhIiivIlGLFGtiQyR~ryl~~y~~w~alwVtwN 73 (205)
T KOG4556|consen 30 QWAPILANFVHIIIVILGLFGTIQYRRRYLYTYASWLALWVTWN 73 (205)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHh
Confidence 35567777777888889999999999999999988776655443
No 69
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=24.04 E-value=1.5e+02 Score=20.30 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=25.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 025283 216 MKIEWRVVAIFNLILFVVLSIVYFVGCCARRNAVR 250 (255)
Q Consensus 216 l~~~~~~v~~~~~~~~~lqi~~~~~a~~l~~~~~~ 250 (255)
+-+.+.+..-++.+++.+-+++.+.+..+.+.-++
T Consensus 44 Lpr~yAi~iPvaagl~ll~lig~Fis~vMlKskkK 78 (81)
T KOG3488|consen 44 LPREYAITIPVAAGLFLLCLIGTFISLVMLKSKKK 78 (81)
T ss_pred cChhHHhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 34445556667888888999999999988866544
No 70
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=22.95 E-value=5e+02 Score=22.45 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 025283 41 GALIFIISIIGFLGA 55 (255)
Q Consensus 41 G~~~~~i~~lG~~ga 55 (255)
+++.|+.+++|.+|.
T Consensus 31 ~~~~F~~~ml~~~G~ 45 (284)
T PF12805_consen 31 ALLTFFFGMLGVYGP 45 (284)
T ss_pred HHHHHHHHHHHHHhh
Confidence 333344444444443
No 71
>PRK11901 hypothetical protein; Reviewed
Probab=21.14 E-value=98 Score=27.80 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 025283 35 LPVLGLGALIFIISIIGFLGALKN 58 (255)
Q Consensus 35 ~~li~~G~~~~~i~~lG~~ga~~e 58 (255)
+.+|++|++++++=++|.-.|+|.
T Consensus 37 h~MiGiGilVLlLLIi~IgSALks 60 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAIGSALKS 60 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccC
Confidence 668888887777666666666553
No 72
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=21.03 E-value=8 Score=29.64 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccccccCC
Q 025283 236 IVYFVGCCARRNAVRSRSK 254 (255)
Q Consensus 236 ~~~~~a~~l~~~~~~~~~~ 254 (255)
++++.....+|+-||++++
T Consensus 92 l~llsg~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 92 LALLSGFLVWRRCRRREKF 110 (129)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHhhhhccccC
Confidence 3333344445565666653
No 73
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.68 E-value=2.5e+02 Score=22.16 Aligned_cols=31 Identities=29% Similarity=0.267 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH----HHhcCchHHH
Q 025283 34 TLPVLGLGALIFIISIIGFLG----ALKNNTILLW 64 (255)
Q Consensus 34 ~~~li~~G~~~~~i~~lG~~g----a~~es~~lL~ 64 (255)
...=+++|.+.++++.+..+- -..+|+..+.
T Consensus 26 ~d~kL~lg~~a~~iA~~a~~~d~~~~f~~s~~~~~ 60 (162)
T PF06703_consen 26 TDIKLALGYLAVIIAGFAFFYDYKYPFPESKPYLI 60 (162)
T ss_pred EcHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHH
Confidence 445678888888888887777 4456664443
No 74
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=20.56 E-value=1e+02 Score=27.27 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 025283 224 AIFNLILFVVLSIVYFVGCCARRNAVRSRSK 254 (255)
Q Consensus 224 ~~~~~~~~~lqi~~~~~a~~l~~~~~~~~~~ 254 (255)
+++|++++++=++. ++|. ++.|.|++..|
T Consensus 275 IaVG~~La~lvliv-LiaY-li~Rrr~~~gY 303 (306)
T PF01299_consen 275 IAVGAALAGLVLIV-LIAY-LIGRRRSRAGY 303 (306)
T ss_pred HHHHHHHHHHHHHH-HHhh-eeEeccccccc
Confidence 33444443333332 3344 44444444355
No 75
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.10 E-value=2.8e+02 Score=19.24 Aligned_cols=11 Identities=9% Similarity=0.365 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 025283 38 LGLGALIFIIS 48 (255)
Q Consensus 38 i~~G~~~~~i~ 48 (255)
+++|+++++.|
T Consensus 49 ~v~gl~llv~G 59 (82)
T PF11239_consen 49 VVVGLALLVAG 59 (82)
T ss_pred HHHHHHHHHHH
Confidence 33444333333
Done!