Query 025283
Match_columns 255
No_of_seqs 138 out of 1269
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 07:15:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8q_A CD81 antigen, extracell 99.2 2.2E-13 7.7E-18 98.0 -5.5 61 86-164 2-65 (90)
2 2jwa_A Receptor tyrosine-prote 56.8 21 0.00072 21.3 4.3 25 223-247 14-38 (44)
3 3rko_K NADH-quinone oxidoreduc 54.5 51 0.0018 22.9 8.2 71 9-84 8-79 (100)
4 2l2t_A Receptor tyrosine-prote 34.0 75 0.0025 18.8 4.3 9 229-237 19-27 (44)
5 2ks1_B Epidermal growth factor 21.9 1.3E+02 0.0045 17.7 4.0 9 229-237 20-28 (44)
6 1oed_C Acetylcholine receptor 19.9 3.6E+02 0.012 22.1 7.5 78 2-82 2-83 (260)
7 4aq5_E Acetylcholine receptor 17.6 4.9E+02 0.017 23.3 8.5 22 60-81 279-300 (488)
8 4aq5_C Acetylcholine receptor 15.5 6.3E+02 0.021 22.8 8.8 26 57-82 303-328 (522)
9 1q90_G Cytochrome B6F complex 14.7 1.9E+02 0.0064 16.3 4.0 24 223-246 6-29 (37)
10 1dme_A CD6 metallothionein-1; 14.1 90 0.0031 16.4 1.5 12 158-169 1-12 (28)
No 1
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=99.17 E-value=2.2e-13 Score=97.99 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=41.1
Q ss_pred eEecCCCcc--cccchhhhhccc-ccchhhhhhccCCcccchhhhhhhccCCCcCCCccCCcChhhhhhCCCCCCCCCCc
Q 025283 86 IITNNGSGH--SVAGLRYKEYQL-KDYSSWFLNHLNNPENWKRLKSCLVKSEDCNNLSKKYKTLKQFKSAKLTPIEAGCC 162 (255)
Q Consensus 86 ~~~~~~~~~--~~~~~~~~~y~~-~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~Dw~~~~~~~vP~SCC 162 (255)
++++++... ..+.+++++|.. ++.. +.+.+||.+|+ +|+|||+++ |+||.. ..||.|||
T Consensus 2 v~~~~v~~~l~~~l~~~~~~y~~~~~~~-------~~~~~~d~iQ~----~l~CCG~~~----~~Dw~~---~~vP~ScC 63 (90)
T 1g8q_A 2 VNKDQIAKDVKQFYDQALQQAVVDDDAN-------NAKAVVKTFHE----TLDCCGSST----LTALTT---SVLKNNLC 63 (90)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHH----HHTCCSCTT----CGGGHH---HHHHTTCS
T ss_pred ccHHHHHHHHHHHHHHHHHHhccCCCch-------hHHHHHHHHHH----hhcCCCCCC----hhhhcc---CCCCCCCC
Confidence 455554431 234566666532 1111 13679999999 999999999 999974 24899999
Q ss_pred CC
Q 025283 163 RP 164 (255)
Q Consensus 163 ~~ 164 (255)
.+
T Consensus 64 ~~ 65 (90)
T 1g8q_A 64 PS 65 (90)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=56.78 E-value=21 Score=21.27 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 025283 223 VAIFNLILFVVLSIVYFVGCCARRN 247 (255)
Q Consensus 223 v~~~~~~~~~lqi~~~~~a~~l~~~ 247 (255)
+++..++++++-++++.+.+++-|+
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheehh
Confidence 3344444444444555555544433
No 3
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=54.45 E-value=51 Score=22.89 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhhh
Q 025283 9 QLLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCLVLVAILVFTVLA 84 (255)
Q Consensus 9 ~l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~vl~~~ei~~~i~~ 84 (255)
++.+..++.+|+|.. .+++....+...-++..++.+.++.+.-..+ +. .-..+....+++-+.|.+.|...
T Consensus 8 ~~~~~~lf~iGl~g~~~r~~ll~~LlslE~m~l~v~l~l~~~~~~~~----~~-~~~~~~l~~l~~aa~E~alGLal 79 (100)
T 3rko_K 8 LILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWG----QT-DGQVMYILAISLAAAEASIGLAL 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCCBHHHHHHHHHHHHHHHHHHHHHHHHHTT----CS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----Cc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999988 6332222233444666676666555443322 11 11234445555566777666533
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=34.01 E-value=75 Score=18.82 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 025283 229 ILFVVLSIV 237 (255)
Q Consensus 229 ~~~~lqi~~ 237 (255)
+++++-+++
T Consensus 19 Gv~~v~ii~ 27 (44)
T 2l2t_A 19 GLFILVIVG 27 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=21.93 E-value=1.3e+02 Score=17.69 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 025283 229 ILFVVLSIV 237 (255)
Q Consensus 229 ~~~~lqi~~ 237 (255)
+++++-+++
T Consensus 20 Gv~~~~ii~ 28 (44)
T 2ks1_B 20 ALLLLLVVA 28 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 6
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=19.89 E-value=3.6e+02 Score=22.11 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=37.7
Q ss_pred chHHHHHH---HHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 025283 2 LIYISNVQ---LLAITIIIFGVWMS-THHDNCRRSLTLPVLGLGALIFIISIIGFLGALKNNTILLWIYLIMLCLVLVAI 77 (255)
Q Consensus 2 ll~~~N~~---l~G~~ll~~Giw~~-~~~~~~~~~~~~~li~~G~~~~~i~~lG~~ga~~es~~lL~~y~~ll~vl~~~e 77 (255)
+.|++|+. ++=..+-.+|-|+- +.+ ++....+.+.++..+++.-+-.-.=..-++-.++..|+..-++++.+-
T Consensus 2 l~Y~~nliiP~~li~~ls~~~F~Lp~~~g---ekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s 78 (260)
T 1oed_C 2 LFYVINFITPCVLISFLASLAFYLPAESG---EKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGV 78 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHH
T ss_pred eEEEEhHHHHHHHHHHHHHHHeeeCCCCC---CeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHH
Confidence 46788883 22233344555555 532 232223333344444433333334344445667777766666655544
Q ss_pred HHHHh
Q 025283 78 LVFTV 82 (255)
Q Consensus 78 i~~~i 82 (255)
++..+
T Consensus 79 ~~~tv 83 (260)
T 1oed_C 79 IVNCG 83 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 7
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=17.61 E-value=4.9e+02 Score=23.28 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 025283 60 TILLWIYLIMLCLVLVAILVFT 81 (255)
Q Consensus 60 ~~lL~~y~~ll~vl~~~ei~~~ 81 (255)
-.++..|+.+.++++.+-++..
T Consensus 279 vPlI~~y~~~~m~lv~~Sll~t 300 (488)
T 4aq5_E 279 VPLIGKYLIFVMFVSLVIVTNC 300 (488)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 4566666665555544433333
No 8
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=15.51 E-value=6.3e+02 Score=22.83 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=14.2
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHh
Q 025283 57 KNNTILLWIYLIMLCLVLVAILVFTV 82 (255)
Q Consensus 57 ~es~~lL~~y~~ll~vl~~~ei~~~i 82 (255)
-.+-.++..|+.+.++++.+-++..+
T Consensus 303 S~~vPlI~~y~~~~m~lv~lSll~tv 328 (522)
T 4aq5_C 303 ALAVPLIGKYLMFIMSLVTGVVVNCG 328 (522)
T ss_dssp TTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677777666655554444333
No 9
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=14.70 E-value=1.9e+02 Score=16.33 Aligned_cols=24 Identities=21% Similarity=0.036 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 025283 223 VAIFNLILFVVLSIVYFVGCCARR 246 (255)
Q Consensus 223 v~~~~~~~~~lqi~~~~~a~~l~~ 246 (255)
+.++.+++.-+.+.+++.+.++-.
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~Qy 29 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHH
Confidence 456777778888888888876543
No 10
>1dme_A CD6 metallothionein-1; NMR {Callinectes sapidus} SCOP: g.46.1.1 PDB: 1dmf_A 1j5m_A
Probab=14.10 E-value=90 Score=16.39 Aligned_cols=12 Identities=25% Similarity=0.783 Sum_probs=7.9
Q ss_pred CCCCcCCCCCCC
Q 025283 158 EAGCCRPPFECG 169 (255)
Q Consensus 158 P~SCC~~~~~C~ 169 (255)
|+.||.+..+|.
T Consensus 1 PdPCC~dkceC~ 12 (28)
T 1dme_A 1 PGPCCNDKCVCQ 12 (28)
T ss_dssp CCCSTTSCCCTT
T ss_pred CCCccCCeeeec
Confidence 788996544453
Done!