Query 025284
Match_columns 255
No_of_seqs 121 out of 438
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:17:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05875 Ceramidase: Ceramidas 100.0 1.9E-67 4E-72 469.8 22.6 243 6-248 1-262 (262)
2 KOG2329 Alkaline ceramidase [L 100.0 3.3E-50 7.3E-55 352.7 11.9 251 5-255 8-272 (276)
3 PRK15087 hemolysin; Provisiona 98.0 0.00084 1.8E-08 58.7 17.9 180 29-223 14-212 (219)
4 PF03006 HlyIII: Haemolysin-II 97.7 0.0028 6.1E-08 54.4 15.5 189 30-218 5-220 (222)
5 PF12036 DUF3522: Protein of u 97.5 0.0034 7.3E-08 53.6 12.8 44 34-85 11-54 (186)
6 PF13965 SID-1_RNA_chan: dsRNA 97.4 0.0064 1.4E-07 60.2 16.0 96 14-109 253-364 (570)
7 TIGR01065 hlyIII channel prote 97.3 0.025 5.4E-07 48.8 16.9 177 31-220 2-197 (204)
8 PF04080 Per1: Per1-like ; In 97.3 0.016 3.6E-07 52.1 15.7 190 28-224 51-263 (267)
9 PF15100 TMEM187: TMEM187 prot 96.8 0.13 2.7E-06 45.1 15.9 191 25-222 41-239 (242)
10 COG1272 Predicted membrane pro 96.3 0.11 2.3E-06 45.7 12.5 180 29-221 19-217 (226)
11 KOG2970 Predicted membrane pro 94.8 1.1 2.5E-05 40.8 13.7 188 29-224 102-307 (319)
12 KOG4243 Macrophage maturation- 93.0 0.019 4E-07 50.4 -1.1 169 32-216 87-277 (298)
13 COG5237 PER1 Predicted membran 92.8 3.4 7.4E-05 37.0 12.7 47 168-220 257-303 (319)
14 PF08255 Leader_Trp: Trp-opero 79.0 0.21 4.4E-06 24.5 -1.7 9 202-210 5-13 (14)
15 COG4539 Predicted membrane pro 43.3 75 0.0016 26.6 5.7 62 76-139 12-75 (180)
16 PF03203 MerC: MerC mercury re 38.6 1.8E+02 0.004 22.4 10.3 18 89-106 1-18 (116)
17 PLN02806 complex I subunit 33.7 1.4E+02 0.003 22.0 5.1 35 189-225 17-52 (81)
18 PF09726 Macoilin: Transmembra 29.7 6.4E+02 0.014 26.0 12.9 22 171-192 99-120 (697)
19 KOG3011 Ubiquitin-conjugating 29.3 82 0.0018 28.3 4.1 89 6-100 59-147 (293)
20 PHA00159 endonuclease I 26.5 26 0.00056 28.6 0.4 15 8-22 102-116 (148)
21 PF01889 DUF63: Membrane prote 23.3 1.3E+02 0.0029 27.2 4.5 25 31-55 21-45 (273)
22 PF08107 Antimicrobial12: Pleu 22.8 27 0.00059 22.5 -0.1 12 1-12 16-27 (42)
23 PF14325 DUF4383: Domain of un 22.7 1.6E+02 0.0034 23.4 4.3 44 32-75 45-92 (125)
24 PF12716 Apq12: Nuclear pore a 20.4 2.4E+02 0.0052 18.7 4.2 43 36-78 4-52 (54)
No 1
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=100.00 E-value=1.9e-67 Score=469.79 Aligned_cols=243 Identities=36% Similarity=0.646 Sum_probs=211.4
Q ss_pred CCccccccccchhhhhcCcccccccchhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhcccccc
Q 025284 6 SSFWGPVTSTIECCEKNYAYSSYIAEFYNTLSNIPTILLALIGLINALRQRFEKRFSVLHISNMILAMGSMLYHATLQRV 85 (255)
Q Consensus 6 ~g~Wg~~tS~~dwCE~~y~~s~yiaEf~NtlSNl~F~~~~l~gl~~~~~~~~~~~~~~~~~~l~~vGiGS~~FH~tl~~~ 85 (255)
||||||+||++|||||||++|+|||||+||+||++|+++|++|+++.+|++.+.++.+.++++++||+||++||+|++++
T Consensus 1 ~g~wg~~ts~~dwCE~nY~~s~yiAEf~NtlSNl~fi~~al~gl~~~~~~~~~~~~~l~~~~l~~VGiGS~~FHaTl~~~ 80 (262)
T PF05875_consen 1 DGYWGPPTSTIDWCEENYVVSPYIAEFWNTLSNLAFIVAALYGLYLARRRGLERRFALLYLGLALVGIGSFLFHATLSYW 80 (262)
T ss_pred CCCCCCCCcccccchhccccCcccchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHhHHHHHhChhhh
Confidence 69999999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhcCCc---cchhhhhHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhh-
Q 025284 86 QQQSDETPMVWEMLLYMYILYSPDW---HYRSTMPTFLFLYGAVFAVVHSVVHFGIGFKLHYVILCLLCIPRMYKYYIH- 161 (255)
Q Consensus 86 ~ql~DeLpM~~~~~~~~~~~~~~~~---~~~~~~~~~l~l~~~~~~v~~~~~~~~~~~~~~y~~l~~~~i~~~~~~~~~- 161 (255)
+|++||+||+++++.+++.++.++. ..+...+..+..+.+..++.+...+++..+|+.|+.++..++.+.....++
T Consensus 81 ~ql~DelPMl~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~t~~~~~~~~p~~~~~~f~~~~~~~~~~~~~~~~~~ 160 (262)
T PF05875_consen 81 TQLLDELPMLWATLLFLYIVLTRRYSSPRYRLALPLLLFIYAVVVTVLYFVLDNPVFHQIAFASLVLLVILRSIYLIRRR 160 (262)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcccccCchhhHHHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988887654 233344566666667777778778888999999998877776665544443
Q ss_pred ----hccHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCC--------CCCcccchHHHHHHHhHHHHHHHHHHHHHHh
Q 025284 162 ----TQDAAAKLLAKMYVASIFLGSLCWLGDRLFCEEVSGW--------PVNPQGHALWHVFMGFNSYFANTFLMFCRAQ 229 (255)
Q Consensus 162 ----~~~~~~~~~~~~~~~~f~la~~~w~~D~~~C~~l~~~--------~~~~~~H~~WHiltal~~y~~~~~~~~~~~~ 229 (255)
.++++.+++...++++|++|+++|++|+.+|+.++.+ ++++|+|+||||+||+|+|+.+++++++|..
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~~~~~~~~ 240 (262)
T PF05875_consen 161 VRDACRRRRARRLLLFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVFVAYLRAL 240 (262)
T ss_pred cCchhhchHHHHHHHHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999974 3568999999999999999999999999976
Q ss_pred hc--CCcceEee-eccccceEE
Q 025284 230 QR--GWAPRVVY-LMGILPYVK 248 (255)
Q Consensus 230 ~~--~~~~~~~~-~~g~~p~v~ 248 (255)
++ +++++++| +.+.+|||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~P~v~ 262 (262)
T PF05875_consen 241 YEGPEPKPKLKWPPWGGLPYVK 262 (262)
T ss_pred HhCCCCceEEEEecCCCCceeC
Confidence 55 55678887 567779985
No 2
>KOG2329 consensus Alkaline ceramidase [Lipid transport and metabolism]
Probab=100.00 E-value=3.3e-50 Score=352.70 Aligned_cols=251 Identities=34% Similarity=0.447 Sum_probs=197.0
Q ss_pred CCCccccccccchhhhhcCcccccccchhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhccccc
Q 025284 5 ISSFWGPVTSTIECCEKNYAYSSYIAEFYNTLSNIPTILLALIGLINALRQRFEKRFSVLHISNMILAMGSMLYHATLQR 84 (255)
Q Consensus 5 ~~g~Wg~~tS~~dwCE~~y~~s~yiaEf~NtlSNl~F~~~~l~gl~~~~~~~~~~~~~~~~~~l~~vGiGS~~FH~tl~~ 84 (255)
.+|+||++||++||||+||+.|+|||||.||+||++|++.+.+++.+..|++.++|+.+..+++++||+||++|||||++
T Consensus 8 ~~g~W~~~tS~~dWCE~NY~~s~yIAEf~NT~sN~~fil~~~~~l~~~y~~~~e~~~~l~~v~~~ivgl~S~~fH~TL~~ 87 (276)
T KOG2329|consen 8 FSGLWGETTSTVDWCEENYAVSPYIAEFANTESNSPFILLAFIGLHCAYRQKLEKRAYLICVLFTIVGLGSMYFHMTLVY 87 (276)
T ss_pred CcccccCcCchhhhhhhchhhhHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchhHHHHHHHHHHHHhcCCccc----hhhhhHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHh
Q 025284 85 VQQQSDETPMVWEMLLYMYILYSPDWHY----RSTMPTFLFLYGAVFAVVHSVVHFGIGFKLHYVILCLLCIPRMYKYYI 160 (255)
Q Consensus 85 ~~ql~DeLpM~~~~~~~~~~~~~~~~~~----~~~~~~~l~l~~~~~~v~~~~~~~~~~~~~~y~~l~~~~i~~~~~~~~ 160 (255)
..|++||+||+|.+..+......|+... +........+..+.+++.+....+|..+|++|..+...+.+..+....
T Consensus 88 ~~QllDElamiw~i~~~~~~cy~p~~~~~~~~~~~~tF~~~~~~~avt~~~l~~~~p~~n~v~~~~~s~~v~v~~~~~~~ 167 (276)
T KOG2329|consen 88 KGQLLDELAMIWEIPLVSLLCYFPKFLVKETFSKRLTFILVLLILAVTIVGLSFLEPIVNAVALGFFSLPVAVVSMYEYY 167 (276)
T ss_pred hheehhhhhHHHHHHHHHHhhcchhhhccccccchhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhhe
Confidence 9999999999994433322233333211 122222233444455556666677888899997665555544433333
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCC--------CcccchHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 025284 161 HTQDAAAKLLAKMYVASIFLGSLCWLGDRLFCEEVSGWPV--------NPQGHALWHVFMGFNSYFANTFLMFCRAQQRG 232 (255)
Q Consensus 161 ~~~~~~~~~~~~~~~~~f~la~~~w~~D~~~C~~l~~~~~--------~~~~H~~WHiltal~~y~~~~~~~~~~~~~~~ 232 (255)
+..++..+.+.....+.++.|+.+|..|+.+|+++..+++ .+++|+|||++++++.|....+..++|..+.+
T Consensus 168 ~~~~~~~r~l~~~~~i~~~v~~~~w~~D~~~c~f~~~~~~~l~~~~gi~l~~~a~Whv~s~~~~y~~~~~~~~~~~~~~~ 247 (276)
T KOG2329|consen 168 IHVNDAKRNLGATGVILWLVGFIFWFLDRLLCSFWLRLRRYLALPLGILLELHAWWHVLTSIGSYRTITFLLYDRVLYLP 247 (276)
T ss_pred eeccHhHhccCceeeeehhhhcchhhhhHHHHHHHHHhhhhhccHHHHHHHHHHHHhheecCChhHHHHHHHHhHHhccC
Confidence 2223222323333578889999999999999999998654 24679999999999999999999999999998
Q ss_pred CcceEe--eeccccceEEecCCCCC
Q 025284 233 WAPRVV--YLMGILPYVKIEKPKSQ 255 (255)
Q Consensus 233 ~~~~~~--~~~g~~p~v~~~~~~~~ 255 (255)
.+++.+ |+.|..|++..++.+++
T Consensus 248 ~~~~~~f~w~~g~~p~~l~~~~~~~ 272 (276)
T KOG2329|consen 248 GEPKVKFYWPWGSLPERLHEKLKTG 272 (276)
T ss_pred CCCCeEEEeecCCcceeeeccccCc
Confidence 888776 45599999999988875
No 3
>PRK15087 hemolysin; Provisional
Probab=98.01 E-value=0.00084 Score=58.68 Aligned_cols=180 Identities=18% Similarity=0.236 Sum_probs=95.0
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHhh----hccc-hh---HHHHHHHHHHHhhhhhhhhcccc----ccccccCchhHHH
Q 025284 29 IAEFYNTLSNIPTILLALIGLINALR----QRFE-KR---FSVLHISNMILAMGSMLYHATLQ----RVQQQSDETPMVW 96 (255)
Q Consensus 29 iaEf~NtlSNl~F~~~~l~gl~~~~~----~~~~-~~---~~~~~~~l~~vGiGS~~FH~tl~----~~~ql~DeLpM~~ 96 (255)
--|..|..|.+.=+++++.|...... ++.+ .+ +.+...++.+--..|+.||+..+ +..+-+|-..|..
T Consensus 14 ~eE~~N~~tH~ig~~~a~~~~~~l~~~~~~~~~~~~~~~~~~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~l 93 (219)
T PRK15087 14 AEEIANSISHGIGLVFGIVGLVLLLVQAVDANADATAITSYSLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYL 93 (219)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHH
Confidence 36889999999766667666543321 1112 11 12223557777778999998873 2447899998887
Q ss_pred HHHHHH----HHHhcCCccchhhhhHHHHHHHHHhhhhh-hh-hc-chhhHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 025284 97 EMLLYM----YILYSPDWHYRSTMPTFLFLYGAVFAVVH-SV-VH-FGIGFKLHYVILCLLCIPRMYKYYIHTQDAAAKL 169 (255)
Q Consensus 97 ~~~~~~----~~~~~~~~~~~~~~~~~l~l~~~~~~v~~-~~-~~-~~~~~~~~y~~l~~~~i~~~~~~~~~~~~~~~~~ 169 (255)
.+..-. +..+... .+..+...... .+.+.+.. .+ .+ ........|..+....+..+. .....-++..-.
T Consensus 94 lIaGsytP~~~~~~~~~--~~~~l~~~iW~-~a~~Gi~~~~~~~~~~r~l~~~~Yl~mGw~~v~~~~-~l~~~~~~~~l~ 169 (219)
T PRK15087 94 LIAGTYTPFLLVGLDSP--LARGLMIVIWS-LALLGILFKLAFAHRFKVLSLVTYLAMGWLSLIVIY-QLAIKLAIGGVT 169 (219)
T ss_pred HHHHhhHHHHHHHccCH--HHHHHHHHHHH-HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-HHHHhCCHHHHH
Confidence 766632 2122211 12222111111 11111111 11 12 122233567766655433221 111111222223
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcccchHHHHHHHhHHHHHHHHH
Q 025284 170 LAKMYVASIFLGSLCWLGDRLFCEEVSGWPVNPQGHALWHVFMGFNSYFANTFL 223 (255)
Q Consensus 170 ~~~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHiltal~~y~~~~~~ 223 (255)
+...+...|.+|-.+-..|+ .++-|.+||++.-+|+..-...+
T Consensus 170 ~l~~GG~~Y~~G~~fY~~~~-----------~p~~H~IwH~fVl~ga~~H~~ai 212 (219)
T PRK15087 170 LLAVGGVVYSLGVIFYVCKR-----------IPYNHAIWHGFVLGGSVCHFLAI 212 (219)
T ss_pred HHHHHhHHHHhhHHHHccCC-----------CCCchhHHHHHHHHHHHHHHHHH
Confidence 34456677888877766663 25679999999999986655443
No 4
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=97.67 E-value=0.0028 Score=54.45 Aligned_cols=189 Identities=15% Similarity=0.160 Sum_probs=93.3
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHh---hhcc-c--hh--HHHHHHHHHHHhhhhhhhhcc-------ccccccccCchhH
Q 025284 30 AEFYNTLSNIPTILLALIGLINAL---RQRF-E--KR--FSVLHISNMILAMGSMLYHAT-------LQRVQQQSDETPM 94 (255)
Q Consensus 30 aEf~NtlSNl~F~~~~l~gl~~~~---~~~~-~--~~--~~~~~~~l~~vGiGS~~FH~t-------l~~~~ql~DeLpM 94 (255)
.|..|..|++.-.++.+....... +.+. + .+ +.+...+...--+.|+.||+. ..+..+.+|-..|
T Consensus 5 NEt~NiwtHll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI 84 (222)
T PF03006_consen 5 NETVNIWTHLLGAILFLALLIFLLSLASSPSFSPWDYIPFLIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGI 84 (222)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhh
Confidence 588999999977665544333222 1111 1 12 223345677777899999992 2334588999998
Q ss_pred HHHHHHH----HHHHhcCCccchhhhhHHHHH---HHHHhhhhhhhhcc--hhhHHHHHHHHHHH-HHHHHHHH-Hhhhc
Q 025284 95 VWEMLLY----MYILYSPDWHYRSTMPTFLFL---YGAVFAVVHSVVHF--GIGFKLHYVILCLL-CIPRMYKY-YIHTQ 163 (255)
Q Consensus 95 ~~~~~~~----~~~~~~~~~~~~~~~~~~l~l---~~~~~~v~~~~~~~--~~~~~~~y~~l~~~-~i~~~~~~-~~~~~ 163 (255)
...+..- .+..+..+...+........+ .+..........++ ...-...|..+... ++|...+. .....
T Consensus 85 ~l~i~gs~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~~ 164 (222)
T PF03006_consen 85 FLLIAGSYTPFIYYGFYCHPWLGWFYLAFIWILALIGIVLSLFPCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFFLGGW 164 (222)
T ss_pred hHhHhhhhhhHHHhhccccchHHHHHHHHHHHHHHHhHHhhcchhhcCCccceeeehHhHHHHHHHHhhhHHHHHHhccc
Confidence 8766653 222222222122211111111 11111111111111 11112345544433 23322111 11111
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcccchHHHHHHHhHHHH
Q 025284 164 D-AAAKLLAKMYVASIFLGSLCWLGDRLFCEEVSGWPVNPQGHALWHVFMGFNSYF 218 (255)
Q Consensus 164 ~-~~~~~~~~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHiltal~~y~ 218 (255)
+ +..-.....+.+++++|-++-..+-+.+-.-.......+.|-+||++..+|+..
T Consensus 165 ~~~~~~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD~~g~sHqi~Hi~v~~~~~~ 220 (222)
T PF03006_consen 165 GSPDPLWLLILGGVLYLLGAVFYATRIPERWFPGKFDIWGHSHQIWHIFVVLAALC 220 (222)
T ss_pred cchHHHHHHHHHHHHHHHhHHHhhhccccccCCCCcCCCCccHHHHHHHHHHHHHH
Confidence 1 111334455788999999998888433211111122356899999999999864
No 5
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=97.46 E-value=0.0034 Score=53.56 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=26.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhcccccc
Q 025284 34 NTLSNIPTILLALIGLINALRQRFEKRFSVLHISNMILAMGSMLYHATLQRV 85 (255)
Q Consensus 34 NtlSNl~F~~~~l~gl~~~~~~~~~~~~~~~~~~l~~vGiGS~~FH~tl~~~ 85 (255)
=|+||++|+-..... .||+.... ...-...++.|+.||+.-...
T Consensus 11 l~lSnl~~lP~i~~a----~rr~~~~E----a~v~~~tm~~S~~YHacd~~~ 54 (186)
T PF12036_consen 11 LTLSNLAFLPTIYVA----VRRRYHFE----AFVYTFTMFFSTFYHACDSGP 54 (186)
T ss_pred HHHHHHHHHHHHHHH----HHHhhHHH----HHHHHHHHHHHHhcccccCCC
Confidence 489999998444332 23322111 223456788999999986433
No 6
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=97.42 E-value=0.0064 Score=60.23 Aligned_cols=96 Identities=25% Similarity=0.343 Sum_probs=65.7
Q ss_pred ccchhhhhcCcccc---cccchhhhhhhHHHHHHHHHHHHHHhhhcc----------chhHHH---HHHHHHHHhhhhhh
Q 025284 14 STIECCEKNYAYSS---YIAEFYNTLSNIPTILLALIGLINALRQRF----------EKRFSV---LHISNMILAMGSML 77 (255)
Q Consensus 14 S~~dwCE~~y~~s~---yiaEf~NtlSNl~F~~~~l~gl~~~~~~~~----------~~~~~~---~~~~l~~vGiGS~~ 77 (255)
..-|=|==||..+. ...-|=|.+||+.++++|+.-+....|++. +.++.+ +-+++++-|+-|+.
T Consensus 253 gn~D~CyyNf~Cs~p~~~~~~FN~v~Sn~gy~~lG~lfliiv~~r~~~~~~~~~~gi~~~~~~~~~~g~~li~egi~sa~ 332 (570)
T PF13965_consen 253 GNQDMCYYNFLCSHPLGGFSAFNNVFSNIGYVLLGLLFLIIVFRRKIFHRQPTSYGIPQHYGLFYAMGLALIMEGILSAC 332 (570)
T ss_pred CCCceeeeehhhhcccccccchhhhHhhHHHHHHHHHHHHHHHHhhhhccccccCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 66778888877663 334445799999999999886654332211 223333 34568889999999
Q ss_pred hhccccccccccCchhHHHHHHHHHHHHhcCC
Q 025284 78 YHATLQRVQQQSDETPMVWEMLLYMYILYSPD 109 (255)
Q Consensus 78 FH~tl~~~~ql~DeLpM~~~~~~~~~~~~~~~ 109 (255)
||.=|++..-..|.-=|-+.....+--++..|
T Consensus 333 yh~CPn~~~fqfdt~fmyvi~~L~~lkiyq~R 364 (570)
T PF13965_consen 333 YHICPNRSNFQFDTSFMYVIAGLCMLKIYQKR 364 (570)
T ss_pred hhcCcCchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999977998888775554332344433
No 7
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=97.34 E-value=0.025 Score=48.80 Aligned_cols=177 Identities=18% Similarity=0.151 Sum_probs=87.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHh---hhccc--hhH--HHHHHHHHHHhhhhhhhhccccc-----cccccCchhHHHHH
Q 025284 31 EFYNTLSNIPTILLALIGLINAL---RQRFE--KRF--SVLHISNMILAMGSMLYHATLQR-----VQQQSDETPMVWEM 98 (255)
Q Consensus 31 Ef~NtlSNl~F~~~~l~gl~~~~---~~~~~--~~~--~~~~~~l~~vGiGS~~FH~tl~~-----~~ql~DeLpM~~~~ 98 (255)
|..|..|.+.=.+.++.+...+. .+..+ .+. .+...+...-=..|+.||..... ..+-+|-..|...+
T Consensus 2 e~~N~~tH~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~lI 81 (204)
T TIGR01065 2 EIANAITHGIGAVLSIIALALLVIYSWDHGGAVAVLGFSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVLI 81 (204)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHHH
Confidence 78999999955555544332221 11111 122 22235566666889999998842 34778998888776
Q ss_pred HHH----HHHHhcCCccchhhhhHHHHHHHHHhhhhhh-hhcc--hhhHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Q 025284 99 LLY----MYILYSPDWHYRSTMPTFLFLYGAVFAVVHS-VVHF--GIGFKLHYVILCLLCIPRMYKYYIHTQDAAAKLLA 171 (255)
Q Consensus 99 ~~~----~~~~~~~~~~~~~~~~~~l~l~~~~~~v~~~-~~~~--~~~~~~~y~~l~~~~i~~~~~~~~~~~~~~~~~~~ 171 (255)
..- .+..+.+.+ +..+....... +...+..- +.++ ...-...|..+....+... ....+..+...-...
T Consensus 82 aGsytP~~~~~~~~~~--~~~~~~~iw~l-a~~gi~~~~~~~~~~r~~r~~~y~~~G~~~v~~~-~~~~~~~~~~~~~~l 157 (204)
T TIGR01065 82 AGTYTPFLLLALPGPL--GWTVLWIIWGL-AIGGIIYKLFFHKRPRWLSLFLYLIMGWLVVLVI-KPLYHNLPGAGFSLL 157 (204)
T ss_pred HHhhHHHHHHHcCCcH--HHHHHHHHHHH-HHHHHHHHHHccCCCchhHHHHHHHHHHHHHHHH-HHHHHhCCHHHHHHH
Confidence 653 222222221 11111111111 11112221 1111 1123345665554422211 111121222222333
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcccchHHHHHHHhHHHHHH
Q 025284 172 KMYVASIFLGSLCWLGDRLFCEEVSGWPVNPQGHALWHVFMGFNSYFAN 220 (255)
Q Consensus 172 ~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHiltal~~y~~~ 220 (255)
..+...|.+|-.+-..|... ++.+ |.+||++.-+|+..-.
T Consensus 158 ~~gg~~Y~~G~~fY~~~~p~-------~~~~--H~iwH~fV~~g~~~h~ 197 (204)
T TIGR01065 158 AAGGLLYTVGAIFYALKWPI-------PFTY--HAIWHLFVLGASACHF 197 (204)
T ss_pred HHHhHHHHcchHheeecCCC-------CCCc--ChHHHHHHHHHHHHHH
Confidence 44667888888887776422 1112 9999999999986543
No 8
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=97.29 E-value=0.016 Score=52.08 Aligned_cols=190 Identities=17% Similarity=0.078 Sum_probs=94.2
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHhhhc---cchh--HHHHHHHHHHHhhhhhhhhccccccccccCchhHHHHHHHHH
Q 025284 28 YIAEFYNTLSNIPTILLALIGLINALRQR---FEKR--FSVLHISNMILAMGSMLYHATLQRVQQQSDETPMVWEMLLYM 102 (255)
Q Consensus 28 yiaEf~NtlSNl~F~~~~l~gl~~~~~~~---~~~~--~~~~~~~l~~vGiGS~~FH~tl~~~~ql~DeLpM~~~~~~~~ 102 (255)
-+-||.-++-++.=+++=..|+.+.+|+. .+.+ +.+..+.-+..=+-|+.||+-=...|+-+|=..=...++.-+
T Consensus 51 GiQEp~Sv~FSllNl~~h~~~~~~~~~~~~~~~p~~~~~~~~~~v~~naW~wStvFH~RD~~~TE~lDYf~A~a~vl~~l 130 (267)
T PF04080_consen 51 GIQEPASVLFSLLNLLAHYRGLRKFRRQVPRNSPMYPYYIIYAIVSMNAWIWSTVFHTRDTPLTEKLDYFSAGATVLFGL 130 (267)
T ss_pred cCchHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCcCeeehHHHHHHHHHHHHHHHHHhcccHhhHhHHhhhHHHHHHHH
Confidence 36799988887777777777776655422 1111 222222223344789999999999999999877555554444
Q ss_pred HHHh----cCCccchhhhhHHHHHHH-HHhhhhhh-hhcch--hhH--HHHHHHHHHHHHHHHHHHHhhhccH------H
Q 025284 103 YILY----SPDWHYRSTMPTFLFLYG-AVFAVVHS-VVHFG--IGF--KLHYVILCLLCIPRMYKYYIHTQDA------A 166 (255)
Q Consensus 103 ~~~~----~~~~~~~~~~~~~l~l~~-~~~~v~~~-~~~~~--~~~--~~~y~~l~~~~i~~~~~~~~~~~~~------~ 166 (255)
|... ...+..+........+.. ...=+.|. ..+-+ .|. ++..++++.+.... .....+++.+ +
T Consensus 131 ~~~~~R~f~l~~~~~~~~~~~~~~~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~-~~~~~~~~~~~~~~~~~ 209 (267)
T PF04080_consen 131 YAAIVRIFRLYRRRRLRRIFTALCIAFYIAHVSYLSFVRFDYGYNMKANVAVGLLQNILWLL-WSFRNYRRYPSVKKSYS 209 (267)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHccccccccHhHHHHHHHHHHHHHHHHHH-HHHHhcccccccccchh
Confidence 4322 121110111111111111 11111222 22211 121 22233333222111 0011111111 0
Q ss_pred H-HHH-HHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcccchHHHHHHHhHHHHHHHHHH
Q 025284 167 A-KLL-AKMYVASIFLGSLCWLGDRLFCEEVSGWPVNPQGHALWHVFMGFNSYFANTFLM 224 (255)
Q Consensus 167 ~-~~~-~~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHiltal~~y~~~~~~~ 224 (255)
. .+. ...-+++..+|..+|..|-.= +...+--|++||+.|..-.++.-.+++
T Consensus 210 ~~~~~~p~~~v~~~~lam~LEl~DFpP------~~~~lDAHALWHl~Tip~~~~wy~Fl~ 263 (267)
T PF04080_consen 210 KRWKLWPILFVVLTILAMSLELFDFPP------IFWLLDAHALWHLATIPPTYLWYDFLI 263 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCc------ccccchHHHHHHHHHhhHHHHHHHHHH
Confidence 1 111 124467788899999999731 112466799999999988877654443
No 9
>PF15100 TMEM187: TMEM187 protein family
Probab=96.79 E-value=0.13 Score=45.08 Aligned_cols=191 Identities=20% Similarity=0.141 Sum_probs=91.4
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHhhhcc---chhHH--HHHHHHHHHhhhhhhhhccccccccccCchhHHHHHH
Q 025284 25 YSSYIAEFYNTLSNIPTILLALIGLINALRQRF---EKRFS--VLHISNMILAMGSMLYHATLQRVQQQSDETPMVWEML 99 (255)
Q Consensus 25 ~s~yiaEf~NtlSNl~F~~~~l~gl~~~~~~~~---~~~~~--~~~~~l~~vGiGS~~FH~tl~~~~ql~DeLpM~~~~~ 99 (255)
.+.+.+-|.|++.|+.|++.|+|.+.+..+.+. +.|+. ++...-..-|.=-+.+=+|.++..-.+|+-..+-.+.
T Consensus 41 LP~~LaMPfNslvNv~Y~llG~yWL~~~~~~~~~~~~a~Y~k~vfa~mAl~YgpVQwlri~Tq~r~~AvLDQW~tLPifA 120 (242)
T PF15100_consen 41 LPAFLAMPFNSLVNVAYVLLGWYWLRRAGKAPGTPARARYLKDVFAWMALHYGPVQWLRIATQTRRAAVLDQWFTLPIFA 120 (242)
T ss_pred chHHhhccHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhhccHHHHHHHHhhHHHH
Confidence 568999999999999999999997643322111 22332 2212223445555667778888888888754442222
Q ss_pred -HHHHHHhcCC-ccchhhhhH-HHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 025284 100 -LYMYILYSPD-WHYRSTMPT-FLFLYGAVFAVVHSVVHFGIGFKLHYVILCLLCIPRMYKYYIHTQDAAAKLLAKMYVA 176 (255)
Q Consensus 100 -~~~~~~~~~~-~~~~~~~~~-~l~l~~~~~~v~~~~~~~~~~~~~~y~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (255)
...|+..-+| |.-...+.+ .+.+..-.++. .+ +.++.+.-+.-....+...++...+..+....+....|+.
T Consensus 121 W~v~Wc~~l~~GW~p~~~l~ie~~Sl~SY~laL----lH-p~GFEvaLG~hI~~av~~a~~~~~r~g~~~s~~yl~La~l 195 (242)
T PF15100_consen 121 WVVAWCLYLDRGWKPWRFLAIECLSLLSYGLAL----LH-PRGFEVALGIHILAAVGQALRTQFRYGDASSLTYLVLAVL 195 (242)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH----hC-cccHHHHHHHHHHHHHHHHHHHHhhhCCcccHHHHHHHHH
Confidence 2234444333 211111111 11111112222 22 2233333222112222222122222223222344444555
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCCCCcccchHHHHHHHhHHHHHHHH
Q 025284 177 SIFLGSLCWLGDRLFCEEVSGWPVNPQGHALWHVFMGFNSYFANTF 222 (255)
Q Consensus 177 ~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHiltal~~y~~~~~ 222 (255)
+.+.=.++-..|.++=.... .. -+.||+|=-++..+-..+...+
T Consensus 196 SclgFvvLkl~D~~La~~~l-Fq-~lTGhFWSKvcdvlqfH~af~f 239 (242)
T PF15100_consen 196 SCLGFVVLKLLDHELARWRL-FQ-RLTGHFWSKVCDVLQFHFAFLF 239 (242)
T ss_pred HHHHHHHHHHhHHHHHhhHH-HH-HhcccHHHHHHHHHHHHHHHhh
Confidence 44433445566875532211 00 2679999888887766555443
No 10
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=96.26 E-value=0.11 Score=45.75 Aligned_cols=180 Identities=16% Similarity=0.143 Sum_probs=93.6
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHh----hhccchh---HHHHHHHHHHHhhhhhhhhcccc-----ccccccCchhHHH
Q 025284 29 IAEFYNTLSNIPTILLALIGLINAL----RQRFEKR---FSVLHISNMILAMGSMLYHATLQ-----RVQQQSDETPMVW 96 (255)
Q Consensus 29 iaEf~NtlSNl~F~~~~l~gl~~~~----~~~~~~~---~~~~~~~l~~vGiGS~~FH~tl~-----~~~ql~DeLpM~~ 96 (255)
=.|..|++|.+.=.++++.++.... .+..... +.+.-.+++..-..|+.||..+. .+.|-+|-..|..
T Consensus 19 ~~e~~n~~tHlvGail~i~~l~~l~~~a~~~~~~~~~~~~~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~~I~v 98 (226)
T COG1272 19 HEEIANAITHLIGAILAIVGLVLLLVYALITGSALAVIVFSIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHSGIYV 98 (226)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHhhhhhHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHHHHHH
Confidence 3577899999977666666554221 1111111 22334568888889999999985 3668999999887
Q ss_pred HHHHH-H---HHHhcCCccchhhhhHHHHHHHHHhhhhh-hhhc-c-hhhHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 025284 97 EMLLY-M---YILYSPDWHYRSTMPTFLFLYGAVFAVVH-SVVH-F-GIGFKLHYVILCLLCIPRMYKYYIHTQDAAAKL 169 (255)
Q Consensus 97 ~~~~~-~---~~~~~~~~~~~~~~~~~l~l~~~~~~v~~-~~~~-~-~~~~~~~y~~l~~~~i~~~~~~~~~~~~~~~~~ 169 (255)
++..- + +..+. .+ .+..+..+.. ..+.+.+.+ +..+ . ...-...|.++...+++... ...+.-+...-.
T Consensus 99 LIAgSyTP~~l~~l~-~~-~~~~~~~iiW-~lal~Gi~~kl~~~~~~r~ls~~~yl~mGw~~v~~~~-~l~~~l~~~~~~ 174 (226)
T COG1272 99 LIAGSYTPFLLVGLY-GP-LGWILLGLIW-GLALAGILFKLFFKKRFRKLSLVLYLAMGWLGLIVIK-PLIAKLGLIGLV 174 (226)
T ss_pred HHHHhhHHHhHHHhc-cc-hHHHHHHHHH-HHHHHHHhhhhhccCcCceeeehhhHHHHHHHHHHHH-HHHHhCchHHHH
Confidence 76652 1 11122 11 2222211111 112222222 1111 1 11112456666655444321 111111221112
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcccchHHHHHHHhHHHHHHH
Q 025284 170 LAKMYVASIFLGSLCWLGDRLFCEEVSGWPVNPQGHALWHVFMGFNSYFANT 221 (255)
Q Consensus 170 ~~~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHiltal~~y~~~~ 221 (255)
+...+..+|.+|-.+-..|. . ....-|.+||++.-.|+.+-..
T Consensus 175 ~l~~GGv~YsvG~ifY~~~~------~---~~~~~H~iwH~fVv~ga~~Hf~ 217 (226)
T COG1272 175 LLALGGVLYSVGAIFYVLRI------D---RIPYSHAIWHLFVVGGAACHFI 217 (226)
T ss_pred HHHHHhHHheeeeEEEEEee------c---cCCchHHHHHHHHHHHHHHHHH
Confidence 33445666777665554443 0 1356799999999999855443
No 11
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=94.81 E-value=1.1 Score=40.75 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=90.9
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHh---hhccchh---HHHHH-HHHHHHhhhhhhhhccccccccccCchhHHHHHHHH
Q 025284 29 IAEFYNTLSNIPTILLALIGLINAL---RQRFEKR---FSVLH-ISNMILAMGSMLYHATLQRVQQQSDETPMVWEMLLY 101 (255)
Q Consensus 29 iaEf~NtlSNl~F~~~~l~gl~~~~---~~~~~~~---~~~~~-~~l~~vGiGS~~FH~tl~~~~ql~DeLpM~~~~~~~ 101 (255)
|-||.-++-+..=++.=..|+..-+ |+..+.| ....+ ..-+..=+-|..||+.=...+.-+|=-.=..+++.-
T Consensus 102 iQEp~SviFS~lNl~~h~~g~~~~r~~~~~~~~~r~~~l~~I~a~i~mnawiwSsvFH~rD~~lTEklDYf~A~~~vlf~ 181 (319)
T KOG2970|consen 102 IQEPFSVIFSFLNLITHYKGLVKFRRPKKPNRPTRYERLWLIYAYIGMNAWIWSSVFHIRDVPLTEKLDYFSAYLTVLFG 181 (319)
T ss_pred ccchHHHHHHHHHHHHHHHHHhheecccCCCCcchhccchhhHHHHHHHHHHHHHhhhhcCCchHhhhhHHHHHHHHHHH
Confidence 6788876544433333444443222 2222222 22222 223455578999999999999999977655444444
Q ss_pred HHHHhcC--C-ccchhhhhHHHHHHHHHhhh--hhh-hhcchh--h--HHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Q 025284 102 MYILYSP--D-WHYRSTMPTFLFLYGAVFAV--VHS-VVHFGI--G--FKLHYVILCLLCIPRMYKYYIHTQDAAAKLLA 171 (255)
Q Consensus 102 ~~~~~~~--~-~~~~~~~~~~l~l~~~~~~v--~~~-~~~~~~--~--~~~~y~~l~~~~i~~~~~~~~~~~~~~~~~~~ 171 (255)
+|..+.+ + ...+.....+-+.+.++.+. .|. +.+-+. + ..+..++++.++.... .+++++-+..++..
T Consensus 182 ly~a~ir~~~i~~~~~~~~~ita~fla~ya~Hi~yls~~~fdYgyNm~~~v~~g~iq~vlw~~~--~~~~~~~~s~~~i~ 259 (319)
T KOG2970|consen 182 LYVALIRMLSIQSLPALRGMITAIFLAFYANHILYLSFYNFDYGYNMIVCVAIGVIQLVLWLVW--SFKKRNLPSFWRIW 259 (319)
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhheecccccceeeehhhHHHHHHHHHHH--HHHhhcCcchhhhh
Confidence 4433211 1 11111111111111111111 111 222111 1 1233444444332221 23333333334432
Q ss_pred -HHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcccchHHHHHHHhHHHHHHHHHH
Q 025284 172 -KMYVASIFLGSLCWLGDRLFCEEVSGWPVNPQGHALWHVFMGFNSYFANTFLM 224 (255)
Q Consensus 172 -~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHiltal~~y~~~~~~~ 224 (255)
..-+..+.+|..++..|-.=-.. .+--|++||+.|---.++.--++.
T Consensus 260 ~~~i~~~~~LA~sLEi~DFpPy~~------~iDAHALWHlaTIplt~~~~~Fv~ 307 (319)
T KOG2970|consen 260 PILIVIFFFLAMSLEIFDFPPYAW------LIDAHALWHLATIPLTILWYDFVS 307 (319)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhh------hcchHHHHHhhcCccHHHHHHHhh
Confidence 33456678999999999743222 356799999999877766654444
No 12
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]
Probab=92.98 E-value=0.019 Score=50.40 Aligned_cols=169 Identities=16% Similarity=0.189 Sum_probs=86.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhcc---chhHHHHH-HHHHHHhhhhhhhhcc------------ccccccccCchhHH
Q 025284 32 FYNTLSNIPTILLALIGLINALRQRF---EKRFSVLH-ISNMILAMGSMLYHAT------------LQRVQQQSDETPMV 95 (255)
Q Consensus 32 f~NtlSNl~F~~~~l~gl~~~~~~~~---~~~~~~~~-~~l~~vGiGS~~FH~t------------l~~~~ql~DeLpM~ 95 (255)
-.|++|...-++.++.|-..+.+... +.-....| .++...-.-|+.||.. +++-..+.|+.-|-
T Consensus 87 vAN~~tHai~I~PaIl~~~~l~~~s~~d~q~i~awIYG~~lc~LFt~STvfH~~~~~~~hqn~~r~l~~~lH~cDRa~IY 166 (298)
T KOG4243|consen 87 VANCYTHAIWIVPAILGSALLHRLSDDDWQKITAWIYGMGLCALFTVSTVFHIVSWKKSHQNKLRTLEHCLHMCDRAVIY 166 (298)
T ss_pred HHhhHhhHhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Confidence 46999999999999998876554222 11122233 4577777889999974 33344578887655
Q ss_pred HHHHHHHHHHhcCCccchh---hhhHHHHHHHHHhhhhhhh-hcch--hhHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 025284 96 WEMLLYMYILYSPDWHYRS---TMPTFLFLYGAVFAVVHSV-VHFG--IGFKLHYVILCLLCIPRMYKYYIHTQDAAAKL 169 (255)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~---~~~~~l~l~~~~~~v~~~~-~~~~--~~~~~~y~~l~~~~i~~~~~~~~~~~~~~~~~ 169 (255)
.++++-....+.-|- .+. -+.-++++. +...+.|.+ ..+. ..-...|.++.+ .|.+... ...+.+--.
T Consensus 167 ~FIAaSY~PWLtLr~-~g~~~~~m~W~IWlm-A~~Gi~Yq~~fHErYK~lEt~~Ylvmg~--gPalvv~--sm~~~~Gl~ 240 (298)
T KOG4243|consen 167 FFIAASYAPWLTLRE-LGPLASHMRWFIWLM-AAGGIIYQFLFHERYKVLETFFYLVMGF--GPALVVT--SMNNTDGLQ 240 (298)
T ss_pred hhhhhcccccccHHh-hCcHHHHHHHHHHHH-HhcchhhhhhHHHHHHHHHHHHHHHHhc--CceEEEE--EeCCchhHH
Confidence 555442111111110 011 111222222 222333322 1211 111233433221 2221100 111211112
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcccchHHHHHHHhHH
Q 025284 170 LAKMYVASIFLGSLCWLGDRLFCEEVSGWPVNPQGHALWHVFMGFNS 216 (255)
Q Consensus 170 ~~~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHiltal~~ 216 (255)
-+..+...|.+|.++--.|..+ +--|+.||++.++|+
T Consensus 241 ~l~~GG~~Y~lGvvFFK~DG~i----------pfAHAIWHLFV~l~A 277 (298)
T KOG4243|consen 241 ELATGGLFYCLGVVFFKSDGII----------PFAHAIWHLFVALAA 277 (298)
T ss_pred HHHhCCEEEEEEEEEEecCCce----------ehHHHHHHHHHHHHc
Confidence 2334566788887777777644 667999999999998
No 13
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=92.83 E-value=3.4 Score=36.97 Aligned_cols=47 Identities=26% Similarity=0.259 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcccchHHHHHHHhHHHHHH
Q 025284 168 KLLAKMYVASIFLGSLCWLGDRLFCEEVSGWPVNPQGHALWHVFMGFNSYFAN 220 (255)
Q Consensus 168 ~~~~~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHiltal~~y~~~ 220 (255)
+|....-+..+.+|-.++..|-.-.+. ++.-|++||+.|.....++.
T Consensus 257 kr~p~~~v~~~~lA~slElfDf~pya~------lIDaHAlWHL~t~~~t~~ly 303 (319)
T COG5237 257 KRIPLFFVFFFFLAGSLELFDFPPYAY------LIDAHALWHLITCISTPFLY 303 (319)
T ss_pred hhhhHHHHHHHHHhhhhhhhccCcHHH------HhhHHHHhHhhhccchHHHH
Confidence 454455567788888999999854444 35679999999999886654
No 14
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=78.99 E-value=0.21 Score=24.55 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=7.6
Q ss_pred cccchHHHH
Q 025284 202 PQGHALWHV 210 (255)
Q Consensus 202 ~~~H~~WHi 210 (255)
+.+|+|||+
T Consensus 5 ~~L~~WWrt 13 (14)
T PF08255_consen 5 FSLHGWWRT 13 (14)
T ss_pred EEEeeEEEc
Confidence 678999995
No 15
>COG4539 Predicted membrane protein [Function unknown]
Probab=43.28 E-value=75 Score=26.57 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=35.7
Q ss_pred hhhhccccccccccCchhHHHHHHHHHHHHhcCCccch-hhhhH-HHHHHHHHhhhhhhhhcchhh
Q 025284 76 MLYHATLQRVQQQSDETPMVWEMLLYMYILYSPDWHYR-STMPT-FLFLYGAVFAVVHSVVHFGIG 139 (255)
Q Consensus 76 ~~FH~tl~~~~ql~DeLpM~~~~~~~~~~~~~~~~~~~-~~~~~-~l~l~~~~~~v~~~~~~~~~~ 139 (255)
+.||-.+++-.--.=-+||+....+.+. -++.-... ..+.+ ...+....++++|...+.+.+
T Consensus 12 aaYH~nprNI~iH~i~IP~ills~avll--hr~vi~l~~~~l~is~a~ll~va~~iFYl~Ldl~~G 75 (180)
T COG4539 12 AAYHHNPRNILIHFIGIPTILLSGAVLL--HRPVIGLSNSKLQISPALLLSVAFSIFYLRLDLPFG 75 (180)
T ss_pred HHHhcCCcceeeeeecchHHHHHHHHHh--hcceeeecCCcceecHHHHHHHHHHHHheeeccchh
Confidence 5789999988877778999987776432 12211110 01111 112234467788877776554
No 16
>PF03203 MerC: MerC mercury resistance protein
Probab=38.63 E-value=1.8e+02 Score=22.38 Aligned_cols=18 Identities=17% Similarity=0.002 Sum_probs=13.0
Q ss_pred cCchhHHHHHHHHHHHHh
Q 025284 89 SDETPMVWEMLLYMYILY 106 (255)
Q Consensus 89 ~DeLpM~~~~~~~~~~~~ 106 (255)
+|++.|.......+.+..
T Consensus 1 ~D~~gi~~S~LC~iHCl~ 18 (116)
T PF03203_consen 1 LDRLGIGASLLCAIHCLA 18 (116)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 588888877777766644
No 17
>PLN02806 complex I subunit
Probab=33.73 E-value=1.4e+02 Score=22.00 Aligned_cols=35 Identities=29% Similarity=0.571 Sum_probs=26.8
Q ss_pred hhhhhhhcCCCCCcccchHHHHH-HHhHHHHHHHHHHH
Q 025284 189 RLFCEEVSGWPVNPQGHALWHVF-MGFNSYFANTFLMF 225 (255)
Q Consensus 189 ~~~C~~l~~~~~~~~~H~~WHil-tal~~y~~~~~~~~ 225 (255)
..+|+.+|.++ +.-|=|.|++ +|+|+++.......
T Consensus 17 qlysNalRKLP--~mrhPWeHV~~~G~GA~~~n~l~~w 52 (81)
T PLN02806 17 QLYSNALRKLP--LMRHPWEHVLAMGLGAVFANQLVKW 52 (81)
T ss_pred HHHHhHHhhCc--cccCcHHHHHHHhhHHHHHHHHHHH
Confidence 46778888643 4469999986 68999998887775
No 18
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.75 E-value=6.4e+02 Score=26.03 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 025284 171 AKMYVASIFLGSLCWLGDRLFC 192 (255)
Q Consensus 171 ~~~~~~~f~la~~~w~~D~~~C 192 (255)
+.++...|+-=-.+|..|+-+|
T Consensus 99 ~~~~~~~~v~~~~~~~~~~~~~ 120 (697)
T PF09726_consen 99 LFFAASTYVWVQYVWHTDRGIC 120 (697)
T ss_pred HHHHHhHHHHHHHhhhccCCcc
Confidence 4456667777778899999888
No 19
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=29.31 E-value=82 Score=28.31 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=49.2
Q ss_pred CCccccccccchhhhhcCcccccccchhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhcccccc
Q 025284 6 SSFWGPVTSTIECCEKNYAYSSYIAEFYNTLSNIPTILLALIGLINALRQRFEKRFSVLHISNMILAMGSMLYHATLQRV 85 (255)
Q Consensus 6 ~g~Wg~~tS~~dwCE~~y~~s~yiaEf~NtlSNl~F~~~~l~gl~~~~~~~~~~~~~~~~~~l~~vGiGS~~FH~tl~~~ 85 (255)
..-||||-|...==..-|......+|-.-++ ++-...-+.|... ...-...+...++|.+.--+||.+||...+++
T Consensus 59 ~~~~~p~~s~~~~Las~~s~~~~~~~~c~~l--f~~~~~~ii~~~~--s~~~~~~~La~~aG~i~AD~~SGl~HWaaD~~ 134 (293)
T KOG3011|consen 59 QRLWGPPLSNDPTLASTWTHRLWVAAGCTTL--FVSFAKSIIGGFG--SHLWLEPALAAYAGYITADLGSGVYHWAADNY 134 (293)
T ss_pred ccccCCCCCCCHHHHHHcCchHHHHhhhHHH--HHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHhhhcceeEeecccc
Confidence 3458888883322222355555566652111 1111112222111 01111224455789999999999999999998
Q ss_pred ccccCchhHHHHHHH
Q 025284 86 QQQSDETPMVWEMLL 100 (255)
Q Consensus 86 ~ql~DeLpM~~~~~~ 100 (255)
+-. |+||+-....
T Consensus 135 Gsv--~tP~vG~~f~ 147 (293)
T KOG3011|consen 135 GSV--STPWVGRQFE 147 (293)
T ss_pred Ccc--ccchhHHHHH
Confidence 864 7888765543
No 20
>PHA00159 endonuclease I
Probab=26.54 E-value=26 Score=28.62 Aligned_cols=15 Identities=47% Similarity=0.687 Sum_probs=12.7
Q ss_pred ccccccccchhhhhc
Q 025284 8 FWGPVTSTIECCEKN 22 (255)
Q Consensus 8 ~Wg~~tS~~dwCE~~ 22 (255)
|=|.+||..+|||.+
T Consensus 102 yKgSkTtYa~Wc~kh 116 (148)
T PHA00159 102 YKGSPTSYAEWCEKH 116 (148)
T ss_pred hcCCCCcHHHHHHHc
Confidence 446799999999995
No 21
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=23.33 E-value=1.3e+02 Score=27.17 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=19.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHhhh
Q 025284 31 EFYNTLSNIPTILLALIGLINALRQ 55 (255)
Q Consensus 31 Ef~NtlSNl~F~~~~l~gl~~~~~~ 55 (255)
++.||++=...+.+++++.++..|+
T Consensus 21 n~Vnt~~YaiiL~~~v~~v~~ll~~ 45 (273)
T PF01889_consen 21 NPVNTLTYAIILGVAVIGVYKLLKR 45 (273)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888877655
No 22
>PF08107 Antimicrobial12: Pleurocidin family; InterPro: IPR012515 This family consists of the pleurocidin family of antimicrobial peptides. Pleurocidins are found in the skin mucous secretions of the winter flounder (Pleuronectes americanus) and these peptides exhibit antimicrobial activity against Escherichia coli. Pleurocidin is predicted to assume an amphipathic alpha-helical conformation similar to other linear antimicrobial peptides and may play a role in innate host defence [].; GO: 0042742 defense response to bacterium; PDB: 1Z64_A 2OJM_A 2JOS_A.
Probab=22.77 E-value=27 Score=22.46 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=2.6
Q ss_pred CCCCCCCccccc
Q 025284 1 MADGISSFWGPV 12 (255)
Q Consensus 1 ~~~~~~g~Wg~~ 12 (255)
||+|-+++||..
T Consensus 16 MaePgE~~~~~i 27 (42)
T PF08107_consen 16 MAEPGECFWGHI 27 (42)
T ss_dssp --------HCCC
T ss_pred HcCcccccHHHH
Confidence 788888998753
No 23
>PF14325 DUF4383: Domain of unknown function (DUF4383)
Probab=22.73 E-value=1.6e+02 Score=23.43 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=28.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhccchhHH----HHHHHHHHHhhhh
Q 025284 32 FYNTLSNIPTILLALIGLINALRQRFEKRFS----VLHISNMILAMGS 75 (255)
Q Consensus 32 f~NtlSNl~F~~~~l~gl~~~~~~~~~~~~~----~~~~~l~~vGiGS 75 (255)
..|.+-|+.-++.|+.|+...++.+..+.|. +.|..+.+.|+..
T Consensus 45 ~vn~lhn~vHl~~Gv~gl~aa~~~~~Ar~~~~~~g~~y~~l~i~Gl~~ 92 (125)
T PF14325_consen 45 AVNPLHNIVHLLFGVAGLAAARSPRAARAFLRLFGVVYLALGIYGLFP 92 (125)
T ss_pred eccHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4899999999999999997655433333332 3344455544443
No 24
>PF12716 Apq12: Nuclear pore assembly and biogenesis; InterPro: IPR024316 This is a family of conserved fungal proteins involved in nuclear pore assembly []. APQ12 is an integral membrane protein of the nuclear envelope (NE) and endoplasmic reticulum. Its absence leads to a partial block in mRNA export and cold-sensitive defects in the growth and localisation of a subset of nucleoporins, particularly those asymmetrically localised to the cytoplasmic fibrils []. The defects in nuclear pore assembly appear to be due to defects in regulating membrane fluidity [].
Probab=20.43 E-value=2.4e+02 Score=18.74 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhccchh--HHH----HHHHHHHHhhhhhhh
Q 025284 36 LSNIPTILLALIGLINALRQRFEKR--FSV----LHISNMILAMGSMLY 78 (255)
Q Consensus 36 lSNl~F~~~~l~gl~~~~~~~~~~~--~~~----~~~~l~~vGiGS~~F 78 (255)
++|+.+.++++|-.++..++-.+.. +.. ..+-+..+++|++.|
T Consensus 4 ~~~il~~l~~lyis~~il~~~~R~~~~~~~~~ir~~f~~~~v~~~~~vy 52 (54)
T PF12716_consen 4 LTSILFLLLILYISLKILDYARRVVIFWVRLVIRLVFWLAVVGVGSWVY 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 5788888888886666554322211 111 122356667776654
Done!