BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025285
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2YDU3|OTUD5_RAT OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2
SV=2
Length = 566
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
+GN++E+QA+ EMYNRP+ +Y Y+TEPIN FHG + ++ PIR+SYH HYNS+V+P +
Sbjct: 279 HGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNK 338
Query: 90 MTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVM 149
T+G GLG + ++ +K AIK ++ I+ +L + + +D E T + IE V
Sbjct: 339 ATIGVGLGLPSFKPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 398
Query: 150 EVSRAEYLAGDNLKQ 164
S ++L D KQ
Sbjct: 399 RESYLQWLR-DQEKQ 412
>sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5 OS=Mus musculus GN=Otud5 PE=1 SV=2
Length = 566
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
+GN++E+QA+ EMYNRP+ +Y Y+TEPIN FHG + ++ PIR+SYH HYNS+V+P +
Sbjct: 279 HGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNK 338
Query: 90 MTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVM 149
T+G GLG + ++ +K AIK ++ I+ +L + + +D E T + IE V
Sbjct: 339 ATIGVGLGLPSFKPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 398
Query: 150 EVSRAEYLAGDNLKQ 164
S ++L D KQ
Sbjct: 399 RESYLQWLR-DQEKQ 412
>sp|Q640H3|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2
SV=1
Length = 518
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
+GN++E+QA+ EMYNRP+ +Y Y TEPIN FHG ++ PIR+SYH HYNS+V+P +
Sbjct: 237 HGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNK 296
Query: 90 MTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVM 149
T+G GLG + + ++ +K+AI+ ++ I+ +L + + +D E T + IE V
Sbjct: 297 ATIGVGLGLPSFKPGHAEQSLMKSAIRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 356
Query: 150 EVSRAEYLAGDNLKQ 164
S ++L D KQ
Sbjct: 357 RESYLQWLR-DQEKQ 370
>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2
SV=1
Length = 560
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
Query: 30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
+GN++E+QA+ EMYNRP+ +Y TEPIN FHG + ++ PIR+SYH HYNS+V+P +
Sbjct: 277 HGNHIEMQAMAEMYNRPVEVYQSGTEPINTFHGIHQNNDEPIRVSYHRNIHYNSVVNPNK 336
Query: 90 MTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVM 149
T+G GLG + D+ +K AIK ++ I+ +L + + +D E T + IE V
Sbjct: 337 ATIGVGLGLPAFKPGFADQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 396
Query: 150 EVSRAEYLAGDNLKQ 164
S ++L D KQ
Sbjct: 397 RESYLQWLR-DQEKQ 410
>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2
SV=1
Length = 518
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
+GN++E+QA+ EMYNRP+ +Y Y TEPIN FHG ++ PIR+SYH HYNS+V+P +
Sbjct: 237 HGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNK 296
Query: 90 MTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVM 149
T+G GLG + ++ +K+AI+ ++ I+ +L + + +D E T + IE V
Sbjct: 297 ATIGVGLGLPSFKPGFAEQSLMKSAIRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 356
Query: 150 EVSRAEYLAGDNLKQ 164
S ++L D KQ
Sbjct: 357 RESYLQWLR-DQEKQ 370
>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2
SV=1
Length = 513
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
+GN++E+QA+ EMYNRP+ +Y Y TEPIN FHG ++ PIR+SYH HYNS+V+P +
Sbjct: 232 HGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQKNEDEPIRVSYHRNIHYNSVVNPNK 291
Query: 90 MTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVM 149
T+G GLG + ++ +K+AI+ ++ I+ +L + + +D E T + IE V
Sbjct: 292 ATIGVGLGLPSFKPGYAEQSLMKSAIRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 351
Query: 150 EVSRAEYLAGDNLKQ 164
S ++L D KQ
Sbjct: 352 RESYLQWLR-DQEKQ 365
>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1
Length = 571
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 30 YGNNVEIQALCEMYNRPIHIYSYTT-----EPINIFHGSYNTDNPPIRLSYHHGNHYNSL 84
+GN++E+QA+ EMYNRP+ +Y Y+T EPIN FHG + ++ PIR+SYH HYNS+
Sbjct: 279 HGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSV 338
Query: 85 VDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEI 144
V+P + T+G GLG + ++ +K AIK ++ I+ +L + + +D E T + I
Sbjct: 339 VNPNKATIGVGLGLPSFKPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAI 398
Query: 145 ECMVMEVSRAEYLAGDNLKQ 164
E V S ++L D KQ
Sbjct: 399 EEQVARESYLQWLR-DQEKQ 417
>sp|Q9UUK3|OTU2_SCHPO Ubiquitin thioesterase otu2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=otu2 PE=4 SV=1
Length = 324
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHH-----GNHYNSL 84
+G+++EIQAL P+H+Y+ T P+ F+ S P+ ++Y+ G HYNSL
Sbjct: 261 WGSDIEIQALANSLEVPVHVYN-TEGPVLKFNPSTVKFEKPLCIAYYQHLFGLGAHYNSL 319
Query: 85 V 85
+
Sbjct: 320 L 320
>sp|P38747|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1
Length = 307
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHH-----GNHYNSL 84
+G +EI AL +++ PI I + PI +++ NP ++L Y+ G HYNSL
Sbjct: 248 WGGEIEILALSHVFDCPISIL-MSGRPIQVYNEC--GKNPELKLVYYKHSYALGEHYNSL 304
Query: 85 VD 86
D
Sbjct: 305 HD 306
>sp|Q748X2|LEU3_GEOSL 3-isopropylmalate dehydrogenase OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=leuB PE=3 SV=1
Length = 362
Score = 34.3 bits (77), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 134 YSDLELTEKEIECMVMEVSR---------AEYLAGDNLKQQLGHKESSTSGAEPSSSGAR 184
Y D+EL+ ++ M++ R E + GD L + S G PS+S A
Sbjct: 216 YPDVELSHMYVDNAAMQLVRWPKQFDVILCENMFGDILSDEAAMLTGSL-GMLPSASLAE 274
Query: 185 SSCSETKLEGGKGCELSDTVLSNSMQMVLSMG----FSYLQVIEAYSIFGDDVDSMVCYL 240
+ + GG +++ ++N + +LSMG FS+ V A D +D+ V +
Sbjct: 275 GTFGMYEPSGGSAPDIAGQGIANPIAQILSMGMMLKFSFGMVDAA-----DAIDNAVATV 329
Query: 241 LETGSSSR 248
L+ G +R
Sbjct: 330 LDQGFRTR 337
>sp|Q39Y29|LEU3_GEOMG 3-isopropylmalate dehydrogenase OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=leuB PE=3 SV=1
Length = 362
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 134 YSDLELTEKEIECMVMEVSR---------AEYLAGDNLKQQLGHKESSTSGAEPSSSGAR 184
Y D+EL+ ++ M++ R E + GD L + S G PS+S A
Sbjct: 216 YPDVELSHMYVDNAAMQLVRWPKQFDVILCENMFGDILSDEAAMLTGSL-GMLPSASLAE 274
Query: 185 SSCSETKLEGGKGCELSDTVLSNSMQMVLSMG----FSYLQVIEAYSIFGDDVDSMVCYL 240
+ + GG +++ ++N + +LSMG FS+ V A D +D+ V +
Sbjct: 275 GTFGMYEPSGGSAPDIAGQGIANPIAQILSMGMMLRFSFGMVDAA-----DAIDNAVAKV 329
Query: 241 LETGSSSR 248
L+ G +R
Sbjct: 330 LDQGCRTR 337
>sp|Q47690|MMUM_ECOLI Homocysteine S-methyltransferase OS=Escherichia coli (strain K12)
GN=mmuM PE=1 SV=2
Length = 310
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 22 VLTSWMQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHY 81
+L + QV + AL H++ T P+ ++ S + + +HHG H
Sbjct: 215 LLAGYPQVVALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHC 274
Query: 82 NSLVD--PRRMTVGAGLGFSCLRGTNVDKDQVKA 113
L D P+ GA L C R T D +KA
Sbjct: 275 AQLADYLPQWQAAGARLIGGCCRTTPADIAALKA 308
>sp|Q0A7K4|ENO_ALHEH Enolase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=eno PE=3
SV=1
Length = 429
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 116 KAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNL 162
K QD+ ++ + EG F DL E +E ++ + RA Y AG+N+
Sbjct: 191 KVLQDRGLNTGVGDEGGFAPDLPSNEAALEVILEAIDRAGYKAGENV 237
>sp|Q9HBE1|PATZ1_HUMAN POZ-, AT hook-, and zinc finger-containing protein 1 OS=Homo
sapiens GN=PATZ1 PE=1 SV=1
Length = 687
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 72 RLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEG 131
R+SYH +H S+ P + G GFS N QV + + + Q + +
Sbjct: 397 RMSYHVRSHDGSVGKPY-ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQTCNASFATRD 455
Query: 132 RFYSDLELTEKEIECMVM-EVSRAEYLAGDNLKQQ 165
R S L E ++ C V + RA Y+A D+LK+
Sbjct: 456 RLRSHLACHEDKVPCQVCGKYLRAAYMA-DHLKKH 489
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Query: 159 GDNL-KQQLGHKESSTSGAEPSSSGA--RSSCSETKL 192
G N+ K++ GH ESST G EPS SG +SSC+ ++L
Sbjct: 341 GSNMDKKEDGHSESSTCGEEPSISGTPEKSSCTLSQL 377
>sp|Q07113|MPRI_MOUSE Cation-independent mannose-6-phosphate receptor OS=Mus musculus
GN=Igf2r PE=1 SV=1
Length = 2483
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 71 IRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAE 130
I+LSY +G YN+ R T+ + F C D+D A + + Q+ DN+
Sbjct: 698 IQLSYRNGTPYNNEKHTPRATL---ITFLC------DRD---AGVGFPEYQEEDNSTY-N 744
Query: 131 GRFYSDLELTEKEIECMVMEVSRAE 155
R+Y+ E+ +ECMV + S E
Sbjct: 745 FRWYTSYACPEEPLECMVTDPSMME 769
>sp|Q9J504|V231_FOWPN Putative ankyrin repeat protein FPV231 OS=Fowlpox virus (strain
NVSL) GN=FPV231 PE=4 SV=1
Length = 256
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 134 YSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHK 169
Y D+ + K IE +V + + EY+A D++K QLG+K
Sbjct: 164 YIDI-IDNKNIEVIVSQFTILEYIAPDDIKNQLGYK 198
>sp|A5UL52|FEN_METS3 Flap endonuclease 1 OS=Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861) GN=fen PE=3 SV=1
Length = 327
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 131 GRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTSGAEPSSSGARSSCSET 190
G Y + + EK+I+ + + YL + + Q+ +E S + + A+ E
Sbjct: 60 GILYRNSSMIEKDIKPIYVFDGTPSYLKQETIDQRRQTREESEKKWKEAL--AKQDTQEA 117
Query: 191 KLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSS 246
+ + +LS ++ +S +++ MG Y IEAY + ++ YL+E G +
Sbjct: 118 RKYAMRSSKLSPYIIESSKKLLTMMGIPY---IEAYG----EGEAQAAYLVENGDA 166
>sp|Q6NG20|ERA_CORDI GTPase Era OS=Corynebacterium diphtheriae (strain ATCC 700971 /
NCTC 13129 / Biotype gravis) GN=era PE=3 SV=1
Length = 305
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 101 LRGTNVDKDQVKAAIKAQQDQQID--NALLAEG-RFYSDLELTEKEIECMVMEVSRAEYL 157
L G N + V A Q+D +D LL EG +FY D +T+ + E + E+ R L
Sbjct: 150 LLGGNSEVVPVSAVTGEQRDVLLDVITRLLPEGPKFYPDDHITDDDTETRLSELIREAAL 209
Query: 158 AGDNLKQQLGH 168
+G LK +L H
Sbjct: 210 SG--LKDELPH 218
>sp|Q1RIM1|TOP1_RICBR DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) GN=topA
PE=3 SV=1
Length = 800
Score = 31.2 bits (69), Expect = 7.2, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 218 SYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGK 252
SY+Q Y IFG++ DS VC +TG S + GK
Sbjct: 580 SYVQQALDYHIFGENKDSKVCPSCKTGELSLKLGK 614
>sp|Q485G8|PYRH_COLP3 Uridylate kinase OS=Colwellia psychrerythraea (strain 34H / ATCC
BAA-681) GN=pyrH PE=3 SV=1
Length = 247
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 75 YHHGNHYNSLVDPRRMTVGAGLG--------FSCLRGTNVDKDQVKAAIKAQQDQQIDNA 126
Y+ N + L R + AG G +CLRG ++ D V A K D A
Sbjct: 117 YNWANAISLLKSGRVVIFSAGTGNPFFTTDSAACLRGIEIEADAVLKATKVDGVYSEDPA 176
Query: 127 LLAEGRFYSDL---ELTEKEIECM 147
E YS+L E+ +KE++ M
Sbjct: 177 KNPEAELYSELSYDEVLDKELKVM 200
>sp|Q5FRY0|GCSP_GLUOX Glycine dehydrogenase [decarboxylating] OS=Gluconobacter oxydans
(strain 621H) GN=gcvP PE=3 SV=1
Length = 951
Score = 30.8 bits (68), Expect = 9.3, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Query: 62 GSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQ 121
G N D I S H N ++ + R+ V A C NVD + +KA I AQ D
Sbjct: 592 GDENRDVCLIPASAHGTNPASAQMAGMRVVVVA-----CDENGNVDVEDLKAKI-AQHDG 645
Query: 122 QIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTSGAEPS 179
++ ++ + E EI +V YL G NL Q+G GA+ S
Sbjct: 646 RVAAIMITYPSTHGVFEERIVEICELVHAAGGQVYLDGANLNAQVGLARPGLYGADVS 703
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,447,625
Number of Sequences: 539616
Number of extensions: 3711230
Number of successful extensions: 10379
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 10357
Number of HSP's gapped (non-prelim): 43
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)