Query 025285
Match_columns 255
No_of_seqs 151 out of 432
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 99.9 3.5E-22 1.2E-26 172.4 5.6 73 18-90 112-185 (185)
2 3phu_A RNA-directed RNA polyme 99.8 6.1E-20 2.1E-24 162.3 6.9 108 17-148 87-199 (219)
3 3by4_A OTU1, ubiquitin thioest 99.7 2.6E-18 8.9E-23 150.2 6.9 67 17-86 72-139 (212)
4 3phx_A RNA-directed RNA polyme 99.7 4.8E-17 1.7E-21 139.8 6.6 69 17-87 87-160 (185)
5 1tff_A Ubiquitin thiolesterase 99.4 1.1E-13 3.8E-18 122.5 7.1 71 16-87 158-231 (234)
6 2zfy_A Ubiquitin thioesterase 99.4 4.2E-13 1.4E-17 118.5 6.5 66 16-85 161-233 (234)
7 4dhi_B Ubiquitin thioesterase 99.0 2.2E-10 7.4E-15 105.0 6.2 74 17-92 197-278 (284)
8 4ddg_A Ubiquitin-conjugating e 98.8 4.1E-09 1.4E-13 99.1 4.3 65 17-85 327-398 (399)
9 1vg5_A RSGI RUH-014, rhomboid 97.8 3.3E-05 1.1E-09 58.0 6.3 62 181-243 6-67 (73)
10 2ooa_A E3 ubiquitin-protein li 97.3 0.00031 1.1E-08 50.0 4.6 39 205-243 11-49 (52)
11 2g3q_A Protein YBL047C; endocy 97.2 0.00025 8.6E-09 47.0 3.6 37 206-242 5-41 (43)
12 1ify_A HHR23A, UV excision rep 97.2 0.00039 1.3E-08 47.8 4.3 41 202-242 5-45 (49)
13 2jy5_A Ubiquilin-1; UBA, alter 97.0 0.0009 3.1E-08 46.6 5.1 42 201-242 8-50 (52)
14 1z96_A DNA-damage, UBA-domain 97.0 0.00063 2.2E-08 43.8 3.8 39 203-241 2-40 (40)
15 2ekk_A UBA domain from E3 ubiq 97.0 0.00081 2.8E-08 45.5 4.1 38 204-242 8-45 (47)
16 2d9s_A CBL E3 ubiquitin protei 97.0 0.0014 4.9E-08 46.7 5.5 43 203-245 7-49 (53)
17 1wji_A Tudor domain containing 96.9 0.00092 3.1E-08 48.5 4.3 41 204-244 8-48 (63)
18 2oo9_A E3 ubiquitin-protein li 96.9 0.0015 5.1E-08 45.4 4.9 43 203-245 2-44 (46)
19 2knz_A Ubiquilin-4; cytoplasm, 96.8 0.0011 3.6E-08 46.3 4.0 43 202-244 8-51 (53)
20 2dak_A Ubiquitin carboxyl-term 96.8 0.0017 5.9E-08 46.5 4.9 40 204-243 8-47 (63)
21 2crn_A Ubash3A protein; compac 96.8 0.0016 5.4E-08 47.3 4.6 42 203-244 7-49 (64)
22 2cpw_A CBL-interacting protein 96.7 0.0031 1E-07 45.7 5.7 39 205-243 19-58 (64)
23 1veg_A NEDD8 ultimate buster-1 96.7 0.0047 1.6E-07 47.4 6.8 41 203-243 27-67 (83)
24 2juj_A E3 ubiquitin-protein li 96.6 0.0026 8.7E-08 45.9 4.6 45 202-246 4-48 (56)
25 1dv0_A DNA repair protein HHR2 96.6 0.00046 1.6E-08 47.3 0.6 40 204-243 3-42 (47)
26 1wgn_A UBAP1, ubiquitin associ 96.5 0.0018 6.1E-08 47.7 3.6 41 203-243 17-57 (63)
27 1wiv_A UBP14, ubiquitin-specif 96.5 0.0031 1.1E-07 46.8 4.8 41 203-243 27-67 (73)
28 4ae4_A Ubiquitin-associated pr 96.4 0.0031 1.1E-07 50.8 4.6 39 205-243 8-46 (118)
29 1whc_A RSGI RUH-027, UBA/UBX 3 96.4 0.0038 1.3E-07 45.1 4.6 40 204-243 8-48 (64)
30 2dag_A Ubiquitin carboxyl-term 96.4 0.0037 1.3E-07 46.5 4.6 40 204-243 8-48 (74)
31 1vej_A Riken cDNA 4931431F19; 96.3 0.012 4.3E-07 44.1 6.9 41 203-243 27-68 (74)
32 2dai_A Ubadc1, ubiquitin assoc 96.2 0.0062 2.1E-07 46.3 5.1 40 204-243 28-67 (83)
33 2dkl_A Trinucleotide repeat co 96.2 0.0065 2.2E-07 46.5 4.9 39 205-243 21-59 (85)
34 1vek_A UBP14, ubiquitin-specif 96.1 0.0061 2.1E-07 46.4 4.8 40 204-243 28-68 (84)
35 2dah_A Ubiquilin-3; UBA domain 95.2 0.036 1.2E-06 38.9 5.4 43 204-246 8-51 (54)
36 2bwb_A Ubiquitin-like protein 94.9 0.032 1.1E-06 37.9 4.3 39 204-242 6-45 (46)
37 2lbc_A Ubiquitin carboxyl-term 94.9 0.025 8.5E-07 45.0 4.4 40 204-243 77-116 (126)
38 1wr1_B Ubiquitin-like protein 94.8 0.029 1E-06 40.1 4.1 40 203-242 15-55 (58)
39 1oqy_A HHR23A, UV excision rep 94.4 0.04 1.4E-06 51.7 5.2 42 201-242 164-205 (368)
40 2qsf_X RAD23, UV excision repa 93.4 0.053 1.8E-06 46.4 3.5 41 203-243 128-168 (171)
41 3zrh_A Ubiquitin thioesterase 92.3 0.11 3.7E-06 50.4 4.3 65 33-98 280-363 (454)
42 2lbc_A Ubiquitin carboxyl-term 92.1 0.11 3.8E-06 41.2 3.6 39 205-243 3-42 (126)
43 1oqy_A HHR23A, UV excision rep 91.3 0.1 3.5E-06 49.0 3.0 41 203-243 323-363 (368)
44 4ae4_A Ubiquitin-associated pr 90.7 0.26 8.9E-06 39.5 4.4 39 204-242 75-113 (118)
45 2dna_A Unnamed protein product 90.4 0.3 1E-05 36.0 4.2 42 203-244 17-59 (67)
46 2cwb_A Chimera of immunoglobul 90.1 0.33 1.1E-05 38.7 4.5 42 203-244 64-106 (108)
47 3k9o_A Ubiquitin-conjugating e 88.4 0.32 1.1E-05 41.3 3.5 40 203-242 161-200 (201)
48 1wj7_A Hypothetical protein (R 85.2 0.72 2.5E-05 36.7 3.7 43 202-244 36-79 (104)
49 3dkb_A Tumor necrosis factor, 84.4 1.1 3.8E-05 42.7 5.2 54 33-88 213-284 (390)
50 2cp8_A NEXT to BRCA1 gene 1 pr 78.6 4.7 0.00016 28.6 5.5 42 204-245 8-50 (54)
51 3e46_A Ubiquitin-conjugating e 68.1 5 0.00017 35.7 4.3 40 203-242 213-252 (253)
52 2cos_A Serine/threonine protei 61.0 12 0.00043 26.5 4.4 42 203-244 7-49 (54)
53 1q02_A Sequestosome 1; helical 55.2 2.9 9.8E-05 29.6 0.3 18 201-218 6-23 (52)
54 2kna_A Baculoviral IAP repeat- 53.3 15 0.0005 28.5 4.1 34 204-247 26-59 (104)
55 1tte_A Ubiquitin-conjugating e 47.7 17 0.00058 31.4 4.0 29 205-233 169-197 (215)
56 2pwq_A Ubiquitin conjugating e 40.3 5.9 0.0002 34.3 0.0 38 205-242 177-214 (216)
57 3mva_O Transcription terminati 36.9 31 0.0011 30.8 4.2 42 205-246 19-64 (343)
58 4fp9_B Mterf domain-containing 35.8 21 0.00073 32.7 3.0 43 205-247 46-92 (335)
59 3ihp_A Ubiquitin carboxyl-term 35.0 30 0.001 35.4 4.2 40 203-242 718-757 (854)
60 1p9y_A Trigger factor, TF; alp 32.8 97 0.0033 23.9 6.0 20 96-115 42-61 (121)
61 3ihp_A Ubiquitin carboxyl-term 23.5 76 0.0026 32.4 4.8 39 205-243 652-691 (854)
62 3t6p_A Baculoviral IAP repeat- 21.1 86 0.0029 28.7 4.2 21 204-224 118-138 (345)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.85 E-value=3.5e-22 Score=172.42 Aligned_cols=73 Identities=45% Similarity=0.899 Sum_probs=52.5
Q ss_pred HHHHHcccCCC-CCCCHHHHHHHHHhhCCCEEEEecCCCceeEecCCCCCCCCCEEEEecCCCCcccccCCCCC
Q 025285 18 VKRFVLTSWMQ-VYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRM 90 (255)
Q Consensus 18 fdeYc~rird~-~WGG~iELqALSelynrpI~Vyq~~~~pI~if~~e~~~~~~pI~LSYH~GeHYNSV~~~~~p 90 (255)
|++||++|++. +|||++||+|||++|++||.||+.+++|++++.+...+..+||+|+||+++|||||++|.+|
T Consensus 112 ~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~~~ 185 (185)
T 3pfy_A 112 FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKA 185 (185)
T ss_dssp --------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSCCTTSCEEEEEETTTEEEEEECC---
T ss_pred HHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccCCCCCEEEEEECCCCCcccccCCCCC
Confidence 89999997665 99999999999999999999999998899988665445678999999999999999999875
No 2
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.79 E-value=6.1e-20 Score=162.25 Aligned_cols=108 Identities=11% Similarity=0.104 Sum_probs=72.1
Q ss_pred hHHHHHcccCC-CCCCCHHHHHHHHHhhCCCEEEEecCCC--c--eeEecCCCCCCCCCEEEEecCCCCcccccCCCCCC
Q 025285 17 VVKRFVLTSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTE--P--INIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMT 91 (255)
Q Consensus 17 ~fdeYc~rird-~~WGG~iELqALSelynrpI~Vyq~~~~--p--I~if~~e~~~~~~pI~LSYH~GeHYNSV~~~~~pt 91 (255)
.|++||+++++ ++|||++||+|||++|++||+||+.+.+ + +..|+++. ..++|+|+||+|+|||||+.....+
T Consensus 87 ~feeY~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~--~~~~I~L~Y~g~~HYdSL~~~~d~~ 164 (219)
T 3phu_A 87 SLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRILPQFE 164 (219)
T ss_dssp CHHHHHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESSCC--TTTSEEEEEETTTEEEEEEECTTTC
T ss_pred CHHHHHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecCCC--CCCeEEEEECCCcCchhheECCCCC
Confidence 48999999655 5999999999999999999999998766 3 44554443 4689999999999999999543322
Q ss_pred CccCCCCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHhcCccccchHHHHHHHHHHH
Q 025285 92 VGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMV 148 (255)
Q Consensus 92 iG~gLglp~~~p~~ad~~~~~~Ai~~se~~~ie~~ml~dk~~~tD~e~t~~eie~~v 148 (255)
-+ .. +....+|+.|+.|+...||||.|.++.+-.+
T Consensus 165 ~~----------~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (219)
T 3phu_A 165 TD----------TR------------EALSLMDRVIAVDQLTSSSSDELQDYEDLAL 199 (219)
T ss_dssp CS----------CC------------CCCCHHHHHHHHHHHHC--------------
T ss_pred CC----------CC------------cchhHHHHHHHHHHHHhccHHhhhhHHHHHH
Confidence 11 11 1123488899999999999999987766533
No 3
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.73 E-value=2.6e-18 Score=150.18 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=59.6
Q ss_pred hHHHHHcccCCC-CCCCHHHHHHHHHhhCCCEEEEecCCCceeEecCCCCCCCCCEEEEecCCCCcccccC
Q 025285 17 VVKRFVLTSWMQ-VYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVD 86 (255)
Q Consensus 17 ~fdeYc~rird~-~WGG~iELqALSelynrpI~Vyq~~~~pI~if~~e~~~~~~pI~LSYH~GeHYNSV~~ 86 (255)
.|++||++|++. +||||+||+|||++|++||.||+..+.++.+|+++. ..++|+|+|| |+|||||+.
T Consensus 72 ~~e~Y~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~~~~~~--~~~~I~L~Y~-g~HYdsl~~ 139 (212)
T 3by4_A 72 PNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNEDK--FDNYILILFN-GIHYDSLTM 139 (212)
T ss_dssp CHHHHHHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEEEEESTTT--CSEEEEEEEC-SSCEEEEEE
T ss_pred CHHHHHHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCeEEeCCCC--CCCeEEEEEc-CCcceEEec
Confidence 499999997665 999999999999999999999998877788886655 5679999999 899999995
No 4
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.67 E-value=4.8e-17 Score=139.83 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=56.3
Q ss_pred hHHHHHcccCCC-CCCCHHHHHHHHHhhCCCEEEEecCCCc----eeEecCCCCCCCCCEEEEecCCCCcccccCC
Q 025285 17 VVKRFVLTSWMQ-VYGNNVEIQALCEMYNRPIHIYSYTTEP----INIFHGSYNTDNPPIRLSYHHGNHYNSLVDP 87 (255)
Q Consensus 17 ~fdeYc~rird~-~WGG~iELqALSelynrpI~Vyq~~~~p----I~if~~e~~~~~~pI~LSYH~GeHYNSV~~~ 87 (255)
.|++||++++++ +|||++||+|||++|+++|+||+.+.+. +..|+++. ..++|+|+||+|+|||||+..
T Consensus 87 ~~~~Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~--~~~~I~L~Y~g~~HYdsl~~~ 160 (185)
T 3phx_A 87 SLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRIL 160 (185)
T ss_dssp CHHHHHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESSCC--TTTSEEEEEETTTEEEEEEEC
T ss_pred CHHHHHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCCCC--CCCEEEEEECCCcCchhceEC
Confidence 489999997655 9999999999999999999999976543 45564443 368999999988999999843
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.44 E-value=1.1e-13 Score=122.48 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=53.2
Q ss_pred chHHHHHcc-cCCC-CCCCHHHHHHHHHhhCCCEEEEecCCCceeEecCCCC-CCCCCEEEEecCCCCcccccCC
Q 025285 16 FVVKRFVLT-SWMQ-VYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYN-TDNPPIRLSYHHGNHYNSLVDP 87 (255)
Q Consensus 16 y~fdeYc~r-ird~-~WGG~iELqALSelynrpI~Vyq~~~~pI~if~~e~~-~~~~pI~LSYH~GeHYNSV~~~ 87 (255)
+.|++||++ ++.. +||||+||+|||+++++||+|++.++.+-.+.+..+. .+.+.|+|+|+.| |||++++.
T Consensus 158 ~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~~~~~~I~LlY~pg-HYdily~~ 231 (234)
T 1tff_A 158 MDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTS-HYNILYAA 231 (234)
T ss_dssp SCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSSCSEEEEEETT-EEEEEEEC
T ss_pred CCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCCCCCCeEEEEECCC-CceecccC
Confidence 369999995 8766 9999999999999999999999987765222212232 3467899999966 99999854
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.38 E-value=4.2e-13 Score=118.53 Aligned_cols=66 Identities=26% Similarity=0.347 Sum_probs=53.2
Q ss_pred chHHHHHcc-cCCC-CCCCHHHHHHHHHhhCCCEEEEecCCCc---ee--EecCCCCCCCCCEEEEecCCCCccccc
Q 025285 16 FVVKRFVLT-SWMQ-VYGNNVEIQALCEMYNRPIHIYSYTTEP---IN--IFHGSYNTDNPPIRLSYHHGNHYNSLV 85 (255)
Q Consensus 16 y~fdeYc~r-ird~-~WGG~iELqALSelynrpI~Vyq~~~~p---I~--if~~e~~~~~~pI~LSYH~GeHYNSV~ 85 (255)
..|++||++ ++.. +||||+||+|||++|++||+|++.++.+ ++ .|.+ ...++|+|+||.| |||+++
T Consensus 161 ~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~---~~~p~I~LlY~pg-HYdiLy 233 (234)
T 2zfy_A 161 RTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE---GSEPKVYLLYRPG-HYDILY 233 (234)
T ss_dssp CCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST---TCCCSEEEEEETT-EEEEEE
T ss_pred CCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC---CCCCeEEEEECCC-CcccCC
Confidence 369999986 8765 9999999999999999999999987653 32 2322 2467899999987 999987
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.03 E-value=2.2e-10 Score=105.00 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=53.8
Q ss_pred hHHHHHcc-cCCC-CCCCHHHHHHHHHhhCCCEEEEecCCCc---e--eE-ecCCCCCCCCCEEEEecCCCCcccccCCC
Q 025285 17 VVKRFVLT-SWMQ-VYGNNVEIQALCEMYNRPIHIYSYTTEP---I--NI-FHGSYNTDNPPIRLSYHHGNHYNSLVDPR 88 (255)
Q Consensus 17 ~fdeYc~r-ird~-~WGG~iELqALSelynrpI~Vyq~~~~p---I--~i-f~~e~~~~~~pI~LSYH~GeHYNSV~~~~ 88 (255)
.+++||++ ++.. +||||+||+|||++|++||.|.+.++.+ + .. |.+......+.|+|.|..| |||-++ |.
T Consensus 197 ~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~~~~~~~p~I~LLYrpg-HYDILY-~~ 274 (284)
T 4dhi_B 197 TVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPSDDQQIAPEITLLYRPG-HYDVIY-KK 274 (284)
T ss_dssp CHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESCCCSCCCCSEEEEEETT-EEEEEE-EC
T ss_pred CHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCCCCCCCCCEEEEeecCC-Cccccc-cC
Confidence 48999995 8887 9999999999999999999998875421 1 22 4222112347899999865 999988 55
Q ss_pred CCCC
Q 025285 89 RMTV 92 (255)
Q Consensus 89 ~pti 92 (255)
.|+-
T Consensus 275 ~p~~ 278 (284)
T 4dhi_B 275 DSTE 278 (284)
T ss_dssp C---
T ss_pred CCCc
Confidence 5543
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=98.75 E-value=4.1e-09 Score=99.12 Aligned_cols=65 Identities=26% Similarity=0.375 Sum_probs=51.7
Q ss_pred hHHHHHcc-cCCC-CCCCHHHHHHHHHhhCCCEEEEecCCC---cee--EecCCCCCCCCCEEEEecCCCCccccc
Q 025285 17 VVKRFVLT-SWMQ-VYGNNVEIQALCEMYNRPIHIYSYTTE---PIN--IFHGSYNTDNPPIRLSYHHGNHYNSLV 85 (255)
Q Consensus 17 ~fdeYc~r-ird~-~WGG~iELqALSelynrpI~Vyq~~~~---pI~--if~~e~~~~~~pI~LSYH~GeHYNSV~ 85 (255)
.+++||++ ++.. +||||+||+|||+.|+++|.|+..++. .++ .+ ++ .+.+.|+|.|..| |||.++
T Consensus 327 ~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~-~~--~~~~~I~LLYrPg-HYDiLY 398 (399)
T 4ddg_A 327 TVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIF-PE--GSEPKVYLLYRPG-HYDILY 398 (399)
T ss_dssp CHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEET-TT--TCCCCCEEEEETB-EEEEEE
T ss_pred CHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeC-CC--CCCCEEEEEEcCC-ccccCC
Confidence 49999995 8887 999999999999999999999875542 222 22 22 2568899999777 999886
No 9
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.84 E-value=3.3e-05 Score=57.98 Aligned_cols=62 Identities=23% Similarity=0.217 Sum_probs=47.4
Q ss_pred ccccccCCCCcccCCCccccCCcccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 181 SGARSSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 181 s~A~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
++++.+...+.....+. +..++.....|+.|+.|||+-.+|+.|+...+-|+|.-+.||++-
T Consensus 6 ~~~r~~~~~~a~~~~~~-~~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 6 SGSRQAPIANAAVLPQS-QGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp CCCCCCCCSCCCCCSSS-CCCSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred ccccccccccCCCCCCC-ccCCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 34444444443333222 345677889999999999999999999999999999999999963
No 10
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=97.27 E-value=0.00031 Score=50.01 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=36.7
Q ss_pred cchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 205 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 205 ~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
.+..|+.|++|||+-..||+|-.+...|+|---+.|+|-
T Consensus 11 ~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 11 VDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 448999999999999999999999999999999999985
No 11
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.24 E-value=0.00025 Score=47.04 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=34.9
Q ss_pred chHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHH
Q 025285 206 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 242 (255)
Q Consensus 206 ~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e 242 (255)
.+.|+.|++|||+-.+++.|+...+-|++.-+.||++
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 4789999999999999999999999999999999985
No 12
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.18 E-value=0.00039 Score=47.83 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=38.6
Q ss_pred CcccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHH
Q 025285 202 DTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 242 (255)
Q Consensus 202 ~~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e 242 (255)
++...+.|+.|+.|||+-.+|+.|....|-|+|.-+.||++
T Consensus 5 ~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 5 GSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp SHHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 56678899999999999999999999999999999999987
No 13
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=97.04 E-value=0.0009 Score=46.59 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=38.0
Q ss_pred CCcccchHHHHHHHhCh-hHHHHHHHHhhccCChhHHHHHHHH
Q 025285 201 SDTVLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLE 242 (255)
Q Consensus 201 ~~~~~~~~~~~~~~mgf-~~~~~~~ay~i~gd~~d~~~~~~~e 242 (255)
+...+.+.|+.|+.||| +-.++++|...-|-|++.-+.||+.
T Consensus 8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 8 PEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp TTTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 44567889999999999 9999999999999999999999974
No 14
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.01 E-value=0.00063 Score=43.80 Aligned_cols=39 Identities=28% Similarity=0.470 Sum_probs=35.1
Q ss_pred cccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHH
Q 025285 203 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL 241 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~ 241 (255)
|...+.|+.|++|||+-.+++.|+.--+-|++.-+.||+
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 456778999999999999999999999999999999985
No 15
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.96 E-value=0.00081 Score=45.49 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=35.2
Q ss_pred ccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHH
Q 025285 204 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 242 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e 242 (255)
+..+.|+.|++|||+-.+++.|+..-| |++.-+.||++
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 8 VNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp SCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 467889999999999999999999998 89999999985
No 16
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.95 E-value=0.0014 Score=46.74 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=39.0
Q ss_pred cccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHhCC
Q 025285 203 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGS 245 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~~~ 245 (255)
+..+..|+.|++|||+...||+|-.+...|+|---+.|+|-.+
T Consensus 7 ~~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 7 GQLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFSG 49 (53)
T ss_dssp SCSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3456779999999999999999999999999999999999864
No 17
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.91 E-value=0.00092 Score=48.45 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=37.8
Q ss_pred ccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHhC
Q 025285 204 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETG 244 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~~ 244 (255)
+..+.|+.|+.|||+-.+|+.|+...+-|++.-+.||++-.
T Consensus 8 ~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~ 48 (63)
T 1wji_A 8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSN 48 (63)
T ss_dssp SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 45788999999999999999999999999999999999853
No 18
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=96.87 E-value=0.0015 Score=45.45 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=39.5
Q ss_pred cccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHhCC
Q 025285 203 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGS 245 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~~~ 245 (255)
+.++..|.+|++|||+...|++|-.|=.-|++---+-|+|-.+
T Consensus 2 ~~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~~ 44 (46)
T 2oo9_A 2 SQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFAA 44 (46)
T ss_dssp CHHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHhcc
Confidence 5688999999999999999999999999999998888888764
No 19
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.83 E-value=0.0011 Score=46.33 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=38.9
Q ss_pred CcccchHHHHHHHhCh-hHHHHHHHHhhccCChhHHHHHHHHhC
Q 025285 202 DTVLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLETG 244 (255)
Q Consensus 202 ~~~~~~~~~~~~~mgf-~~~~~~~ay~i~gd~~d~~~~~~~e~~ 244 (255)
...+.+.|+.|++||| .-.+++.|...-|-|++.-+.||++-+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3457788999999999 999999999999999999999999855
No 20
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.79 E-value=0.0017 Score=46.52 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=37.1
Q ss_pred ccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 204 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
...+.|+.|+.|||+-.+++.|....+-+++.-+.||++-
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 8 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 5678899999999999999999999999999999999974
No 21
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.76 E-value=0.0016 Score=47.32 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=37.7
Q ss_pred cccchHHHHHHHhChhHHHHHHHHhhccC-ChhHHHHHHHHhC
Q 025285 203 TVLSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLETG 244 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~~~~~ay~i~gd-~~d~~~~~~~e~~ 244 (255)
......|+.|++|||+-.+++.|...-|. +++.-++||++-.
T Consensus 7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 7 GSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHC 49 (64)
T ss_dssp CCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 34667899999999999999999999887 9999999999864
No 22
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.69 E-value=0.0031 Score=45.67 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=35.8
Q ss_pred cchHHHHHHHhChhHHHHHHHHhhccC-ChhHHHHHHHHh
Q 025285 205 LSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 243 (255)
Q Consensus 205 ~~~~~~~~~~mgf~~~~~~~ay~i~gd-~~d~~~~~~~e~ 243 (255)
..+.|+.|++|||+-.+++.|+..-|- |++.-+.||++-
T Consensus 19 ~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 19 HGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 456899999999999999999999996 999999999974
No 23
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.66 E-value=0.0047 Score=47.40 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=38.0
Q ss_pred cccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 203 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
++....|+.|+.|||+-.+|+.|....|.|++.-+.||+.-
T Consensus 27 ~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 27 SPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34678999999999999999999999999999999999985
No 24
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=96.60 E-value=0.0026 Score=45.86 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=40.9
Q ss_pred CcccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHhCCc
Q 025285 202 DTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSS 246 (255)
Q Consensus 202 ~~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~~~~ 246 (255)
.+..+..|++|++|||+...|++|-.|=..|++---+.|+|-.+-
T Consensus 4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf~~~ 48 (56)
T 2juj_A 4 SPQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFVSI 48 (56)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHSCCC
T ss_pred CCCChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHHHcc
Confidence 345678999999999999999999999999999999999998754
No 25
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=96.58 E-value=0.00046 Score=47.29 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=36.5
Q ss_pred ccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 204 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
.-.+.|+.|++|||+-.+||+||.--|-|++.-.+||++-
T Consensus 3 ~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 3 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4467899999999999999999999999999999999863
No 26
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.54 E-value=0.0018 Score=47.67 Aligned_cols=41 Identities=24% Similarity=0.506 Sum_probs=37.3
Q ss_pred cccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 203 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
+--++.|.+|++|||++.|++.|---=|-|++..+.||.--
T Consensus 17 ~se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 17 PSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34567899999999999999999999999999999999865
No 27
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.51 E-value=0.0031 Score=46.77 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=37.9
Q ss_pred cccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 203 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
.+..+.|+.|+.|||+-.+|+.|+..-|-|++.-+.||++-
T Consensus 27 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 27 DIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp SSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 35678999999999999999999999999999999999974
No 28
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=96.42 E-value=0.0031 Score=50.79 Aligned_cols=39 Identities=26% Similarity=0.533 Sum_probs=35.7
Q ss_pred cchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 205 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 205 ~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
-...|+.|++|||+..+|..|-.-.|.|++.+++||++-
T Consensus 8 e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 8 ERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 345789999999999999999999999999999999975
No 29
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.41 E-value=0.0038 Score=45.09 Aligned_cols=40 Identities=18% Similarity=0.396 Sum_probs=36.5
Q ss_pred ccchHHHHHHHhChhHHHHHHHHhhcc-CChhHHHHHHHHh
Q 025285 204 VLSNSMQMVLSMGFSYLQVIEAYSIFG-DDVDSMVCYLLET 243 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~~~~~~~ay~i~g-d~~d~~~~~~~e~ 243 (255)
...+.|+.|++|||+-.+++.|+..-| -+++.-+.||++-
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 8 AELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 456789999999999999999999995 7999999999985
No 30
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.40 E-value=0.0037 Score=46.49 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=37.0
Q ss_pred ccchHHHHHHHhChhHHHHHHHHhhccC-ChhHHHHHHHHh
Q 025285 204 VLSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 243 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~~~~~~~ay~i~gd-~~d~~~~~~~e~ 243 (255)
+..+.|+.|+.|||+-.+++.|+..-|. +++.-++||++-
T Consensus 8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 8 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp SCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 4678999999999999999999999985 899999999985
No 31
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.27 E-value=0.012 Score=44.07 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=37.0
Q ss_pred cccchHHHHHHHhCh-hHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 203 TVLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf-~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
..+.+.|+.|+.||| .-.++++|...-+-|++.-|.||+.-
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 467889999999999 57888999999999999999999963
No 32
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.21 E-value=0.0062 Score=46.35 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=37.4
Q ss_pred ccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 204 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
+..+.|+.|++|||+-.+++.|+..-+-+++.-++||++-
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 5678899999999999999999999999999999999985
No 33
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.15 E-value=0.0065 Score=46.49 Aligned_cols=39 Identities=26% Similarity=0.310 Sum_probs=36.7
Q ss_pred cchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 205 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 205 ~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
..+.|+.|+.|||+-.+|++|+...+-+++.-+.||++-
T Consensus 21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 21 MSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 378999999999999999999999999999999999985
No 34
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.15 E-value=0.0061 Score=46.37 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=36.2
Q ss_pred ccchHHHHHHHhChhHHHHHHHHhhccC-ChhHHHHHHHHh
Q 025285 204 VLSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 243 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~~~~~~~ay~i~gd-~~d~~~~~~~e~ 243 (255)
.....|+.|++|||+-.+++.|...-|+ +++.-++||++-
T Consensus 28 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 28 ANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4678999999999999999999888874 999999999985
No 35
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.23 E-value=0.036 Score=38.92 Aligned_cols=43 Identities=26% Similarity=0.310 Sum_probs=37.5
Q ss_pred ccchHHHHHHHhChhHH-HHHHHHhhccCChhHHHHHHHHhCCc
Q 025285 204 VLSNSMQMVLSMGFSYL-QVIEAYSIFGDDVDSMVCYLLETGSS 246 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~~~-~~~~ay~i~gd~~d~~~~~~~e~~~~ 246 (255)
.+.+.|+.|..|||+-. .+++|...-+-|++.-|.||+.-+..
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 46788999999999655 57999999999999999999987643
No 36
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=94.93 E-value=0.032 Score=37.92 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=34.7
Q ss_pred ccchHHHHHHHhChh-HHHHHHHHhhccCChhHHHHHHHH
Q 025285 204 VLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLE 242 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~-~~~~~~ay~i~gd~~d~~~~~~~e 242 (255)
.+.+.|+.|++|||+ -.++++|...-+-|++.-|.||+.
T Consensus 6 ~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 6 RYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 467899999999996 567899999999999999999973
No 37
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=94.92 E-value=0.025 Score=45.00 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=37.0
Q ss_pred ccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 204 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
.....|+.|++|||+-.+++.|+...|-|++.-+.||+..
T Consensus 77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~ 116 (126)
T 2lbc_A 77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSH 116 (126)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4678899999999999999999999999999999999864
No 38
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=94.84 E-value=0.029 Score=40.07 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=36.0
Q ss_pred cccchHHHHHHHhChh-HHHHHHHHhhccCChhHHHHHHHH
Q 025285 203 TVLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLE 242 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~-~~~~~~ay~i~gd~~d~~~~~~~e 242 (255)
..+.+.|+.|++|||. -.++++|...-+-|++.-|.||+.
T Consensus 15 ~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4577899999999995 668899999999999999999985
No 39
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=94.44 E-value=0.04 Score=51.72 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=38.4
Q ss_pred CCcccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHH
Q 025285 201 SDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 242 (255)
Q Consensus 201 ~~~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e 242 (255)
.++.....|+.|++|||+-.+|+.|-..=+-|+|.-+.||+.
T Consensus 164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 164 TGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp CTTTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456788999999999999999999999999999999999973
No 40
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=93.37 E-value=0.053 Score=46.41 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=37.5
Q ss_pred cccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 203 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
+.-...|+.|++|||+-.+||+||.--+-|.+.-.+||++-
T Consensus 128 pee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 128 PEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34557899999999999999999999999999999999974
No 41
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=92.25 E-value=0.11 Score=50.39 Aligned_cols=65 Identities=26% Similarity=0.431 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCCCEEEEecCC---------Ccee---EecCCCCC----CCCCEEEEecCCCCcccccCCCC---CCCc
Q 025285 33 NVEIQALCEMYNRPIHIYSYTT---------EPIN---IFHGSYNT----DNPPIRLSYHHGNHYNSLVDPRR---MTVG 93 (255)
Q Consensus 33 ~iELqALSelynrpI~Vyq~~~---------~pI~---if~~e~~~----~~~pI~LSYH~GeHYNSV~~~~~---ptiG 93 (255)
++=+-+||++++|||+||.... .|+. ||.+-.-+ -..||.|.|++| ||-+++.... +.+|
T Consensus 280 eiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~g-HFsaLV~~~~~~~~~~~ 358 (454)
T 3zrh_A 280 QTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRG-HFSALVAMENDGYGNRG 358 (454)
T ss_dssp HHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEETT-EEEEEEEBCCC------
T ss_pred HHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEeccc-ceeeeeecccccccccc
Confidence 6778999999999999998532 1333 22111000 357999999987 9999985543 2345
Q ss_pred cCCCC
Q 025285 94 AGLGF 98 (255)
Q Consensus 94 ~gLgl 98 (255)
.|.++
T Consensus 359 a~~~~ 363 (454)
T 3zrh_A 359 AGANL 363 (454)
T ss_dssp -----
T ss_pred ccccc
Confidence 55443
No 42
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=92.08 E-value=0.11 Score=41.20 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=35.7
Q ss_pred cchHHHHHHHhChhHHHHHHHHhhccC-ChhHHHHHHHHh
Q 025285 205 LSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 243 (255)
Q Consensus 205 ~~~~~~~~~~mgf~~~~~~~ay~i~gd-~~d~~~~~~~e~ 243 (255)
....++.|++|||+-.++-+|-..-|. +++.-++||++-
T Consensus 3 d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 3 DESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp CTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 457899999999999999999999987 899999999984
No 43
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=91.34 E-value=0.1 Score=48.98 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=38.1
Q ss_pred cccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHh
Q 025285 203 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 243 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~ 243 (255)
+.....|..|++|||+-.+|++||...+-|++.-++||++-
T Consensus 323 ~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 323 PQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp TTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred CcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 45678999999999999999999999999999999999975
No 44
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=90.68 E-value=0.26 Score=39.49 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=36.0
Q ss_pred ccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHH
Q 025285 204 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 242 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e 242 (255)
+.++.|.+|..|||+-.+|.+|--..+-|+|.-+-||+=
T Consensus 75 ~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 75 EFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356899999999999999999999999999999999973
No 45
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.44 E-value=0.3 Score=35.98 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=36.4
Q ss_pred cccchHHHHHHHhChhHH-HHHHHHhhccCChhHHHHHHHHhC
Q 025285 203 TVLSNSMQMVLSMGFSYL-QVIEAYSIFGDDVDSMVCYLLETG 244 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~-~~~~ay~i~gd~~d~~~~~~~e~~ 244 (255)
..+.+.|+.|.+|||.-. ++++|-..-+-|++.-|.||+.-+
T Consensus 17 ~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~ 59 (67)
T 2dna_A 17 VRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQ 59 (67)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 357789999999999655 559999999999999999999864
No 46
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=90.12 E-value=0.33 Score=38.75 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=37.3
Q ss_pred cccchHHHHHHHhChh-HHHHHHHHhhccCChhHHHHHHHHhC
Q 025285 203 TVLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLETG 244 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~-~~~~~~ay~i~gd~~d~~~~~~~e~~ 244 (255)
..+.+.|+.|..|||. -.++++|...-+-|++.-|.||+.-|
T Consensus 64 ~~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 64 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp CTTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 3567899999999995 47999999999999999999999754
No 47
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=88.44 E-value=0.32 Score=41.34 Aligned_cols=40 Identities=28% Similarity=0.288 Sum_probs=37.2
Q ss_pred cccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHH
Q 025285 203 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 242 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e 242 (255)
+.....|+.|+.|||+-.+|++|.+-.+=|++.-+.||++
T Consensus 161 ~~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 161 PEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 3568899999999999999999999999999999999986
No 48
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=85.24 E-value=0.72 Score=36.71 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=39.2
Q ss_pred CcccchHHHHHHHh-ChhHHHHHHHHhhccCChhHHHHHHHHhC
Q 025285 202 DTVLSNSMQMVLSM-GFSYLQVIEAYSIFGDDVDSMVCYLLETG 244 (255)
Q Consensus 202 ~~~~~~~~~~~~~m-gf~~~~~~~ay~i~gd~~d~~~~~~~e~~ 244 (255)
++.....|+.|+.| ||+-.+|+.|.+--+=|++.-|.+|+|-+
T Consensus 36 d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 36 DADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 34567899999999 99999999999999999999999999864
No 49
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=84.45 E-value=1.1 Score=42.74 Aligned_cols=54 Identities=30% Similarity=0.532 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCEEEEecC-------CC---cee---EecC-----CCCCCCCCEEEEecCCCCcccccCCC
Q 025285 33 NVEIQALCEMYNRPIHIYSYT-------TE---PIN---IFHG-----SYNTDNPPIRLSYHHGNHYNSLVDPR 88 (255)
Q Consensus 33 ~iELqALSelynrpI~Vyq~~-------~~---pI~---if~~-----e~~~~~~pI~LSYH~GeHYNSV~~~~ 88 (255)
++=+-+||++++|||+||... ++ |+. ||-+ ++ --+.||.|.|.+| ||-+++...
T Consensus 213 eiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~-C~rsPI~LgY~s~-HFsaLV~me 284 (390)
T 3dkb_A 213 EIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQE-CYRYPIVLGYDSH-HFVPLVTLK 284 (390)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTS-SCSSCEEEEECSS-CEEEEEEBC
T ss_pred HHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHH-ccCCceEEEeccC-ceeeeeecc
Confidence 788999999999999999622 21 222 2211 11 1356999999985 999999654
No 50
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=78.64 E-value=4.7 Score=28.56 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=38.2
Q ss_pred ccchHHHHHHHhCh-hHHHHHHHHhhccCChhHHHHHHHHhCC
Q 025285 204 VLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLETGS 245 (255)
Q Consensus 204 ~~~~~~~~~~~mgf-~~~~~~~ay~i~gd~~d~~~~~~~e~~~ 245 (255)
.+.+-++.|..||| .-.+-++|-.=-|.|++..|..|+..|.
T Consensus 8 ~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~ 50 (54)
T 2cp8_A 8 QTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSG 50 (54)
T ss_dssp THHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccC
Confidence 46678999999999 8999999999999999999999998864
No 51
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=68.11 E-value=5 Score=35.71 Aligned_cols=40 Identities=25% Similarity=0.247 Sum_probs=37.3
Q ss_pred cccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHH
Q 025285 203 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 242 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e 242 (255)
+.+.+-|+.|+.|||.-.+|++|.+-.|=|.+.-+.+|+.
T Consensus 213 ~~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 213 PEYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4678899999999999999999999999999999999975
No 52
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=61.02 E-value=12 Score=26.52 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=33.8
Q ss_pred cccchHHHHHHHhChhHHHHHHHHhhccC-ChhHHHHHHHHhC
Q 025285 203 TVLSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLETG 244 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~~~~~ay~i~gd-~~d~~~~~~~e~~ 244 (255)
++-++-+++|+.|||+-.+|..|-..=|. .+.--+.||.-++
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence 35567789999999999999999998886 5666677776654
No 53
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=55.17 E-value=2.9 Score=29.62 Aligned_cols=18 Identities=50% Similarity=0.724 Sum_probs=16.2
Q ss_pred CCcccchHHHHHHHhChh
Q 025285 201 SDTVLSNSMQMVLSMGFS 218 (255)
Q Consensus 201 ~~~~~~~~~~~~~~mgf~ 218 (255)
+|+-+.+++..+++|||+
T Consensus 6 ~D~rl~~al~qMl~MGF~ 23 (52)
T 1q02_A 6 ADPRLIESLSQMLSMGFS 23 (52)
T ss_dssp SCHHHHHHHHHHHTTTCC
T ss_pred cChHHHHHHHHHHHcCCC
Confidence 477799999999999997
No 54
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=53.30 E-value=15 Score=28.49 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=24.3
Q ss_pred ccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHHhCCcc
Q 025285 204 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSS 247 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e~~~~~ 247 (255)
..++=|+.++.|||.+.+|-.+ |.+.|..+|.+.
T Consensus 26 m~s~vV~~alemGf~~~~V~~~----------v~~ki~~sG~~y 59 (104)
T 2kna_A 26 FQNPMVQEAIRMGFSFKDIKKI----------MEEKIQISGSNY 59 (104)
T ss_dssp HHCTHHHHHHHTTCCHHHHHHH----------HHHHHHHHSSCC
T ss_pred HcCHHHHHHHHcCccHHHHHHH----------HHHHHHHhCCCc
Confidence 3677889999999999887554 255666666543
No 55
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=47.74 E-value=17 Score=31.42 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=25.3
Q ss_pred cchHHHHHHHhChhHHHHHHHHhhccCCh
Q 025285 205 LSNSMQMVLSMGFSYLQVIEAYSIFGDDV 233 (255)
Q Consensus 205 ~~~~~~~~~~mgf~~~~~~~ay~i~gd~~ 233 (255)
...-|+.|+.|||+...|++|.+-.|=|-
T Consensus 169 ~~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 169 DHDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 45689999999999999999999887554
No 56
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=40.30 E-value=5.9 Score=34.32 Aligned_cols=38 Identities=24% Similarity=0.109 Sum_probs=0.0
Q ss_pred cchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHH
Q 025285 205 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 242 (255)
Q Consensus 205 ~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e 242 (255)
...-|+.++.|||.-..++.|.+-.|-|.+..+..|+.
T Consensus 177 ~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~ 214 (216)
T 2pwq_A 177 REVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLE 214 (216)
T ss_dssp --------------------------------------
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhc
Confidence 36788999999999999999999999999998888874
No 57
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=36.95 E-value=31 Score=30.78 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=33.0
Q ss_pred cchHHHHHHHhChhHHHHHHHH-hhcc---CChhHHHHHHHHhCCc
Q 025285 205 LSNSMQMVLSMGFSYLQVIEAY-SIFG---DDVDSMVCYLLETGSS 246 (255)
Q Consensus 205 ~~~~~~~~~~mgf~~~~~~~ay-~i~g---d~~d~~~~~~~e~~~~ 246 (255)
-.++++.|.++||+..+++.++ .++. +++|.++.||.+.|-+
T Consensus 19 ~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s 64 (343)
T 3mva_O 19 NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGAS 64 (343)
T ss_dssp -CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCC
Confidence 4568899999999999998875 2333 5889999999988854
No 58
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=35.84 E-value=21 Score=32.68 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=35.9
Q ss_pred cchHHHHHHHhChhHHHHHHHHh----hccCChhHHHHHHHHhCCcc
Q 025285 205 LSNSMQMVLSMGFSYLQVIEAYS----IFGDDVDSMVCYLLETGSSS 247 (255)
Q Consensus 205 ~~~~~~~~~~mgf~~~~~~~ay~----i~gd~~d~~~~~~~e~~~~~ 247 (255)
...+|+.|+.|||+-.++-.+-+ |+..++..+|.||...|-+.
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~ 92 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNP 92 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCH
Confidence 67789999999999999988765 56777888999999988543
No 59
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=34.97 E-value=30 Score=35.37 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=35.9
Q ss_pred cccchHHHHHHHhChhHHHHHHHHhhccCChhHHHHHHHH
Q 025285 203 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 242 (255)
Q Consensus 203 ~~~~~~~~~~~~mgf~~~~~~~ay~i~gd~~d~~~~~~~e 242 (255)
...++.+.+|.+|||+..++..|...-+.++...+.||+.
T Consensus 718 ~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs 757 (854)
T 3ihp_A 718 PPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 757 (854)
T ss_dssp -CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhc
Confidence 3457889999999999999999999999999999999875
No 60
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=32.81 E-value=97 Score=23.93 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=15.6
Q ss_pred CCCCCCCCCcccHHHHHHHH
Q 025285 96 LGFSCLRGTNVDKDQVKAAI 115 (255)
Q Consensus 96 Lglp~~~p~~ad~~~~~~Ai 115 (255)
.-+|||+||-|-...+++-.
T Consensus 42 v~ipGFRkGKvP~~vi~k~y 61 (121)
T 1p9y_A 42 VRIDGLRKGKVPMNIVAQRY 61 (121)
T ss_dssp CCCTTSCTTCSCHHHHHHHH
T ss_pred CccCCcCCCCCCHHHHHHHH
Confidence 47899999999887655544
No 61
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=23.49 E-value=76 Score=32.42 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=32.1
Q ss_pred cchHHHHHHHhChhHHHHHHHHhhccC-ChhHHHHHHHHh
Q 025285 205 LSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 243 (255)
Q Consensus 205 ~~~~~~~~~~mgf~~~~~~~ay~i~gd-~~d~~~~~~~e~ 243 (255)
....+++|++|||+..+...|...=|. +++.-.+||++-
T Consensus 652 d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~h 691 (854)
T 3ihp_A 652 DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSH 691 (854)
T ss_dssp -CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhc
Confidence 456899999999999999999777665 488888888775
No 62
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=21.14 E-value=86 Score=28.75 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=17.6
Q ss_pred ccchHHHHHHHhChhHHHHHH
Q 025285 204 VLSNSMQMVLSMGFSYLQVIE 224 (255)
Q Consensus 204 ~~~~~~~~~~~mgf~~~~~~~ 224 (255)
..++-|+.+|.|||+..+|-.
T Consensus 118 ~~~~~v~~~l~mGf~~~~v~~ 138 (345)
T 3t6p_A 118 MNTPVVKSALEMGFNRDLVKQ 138 (345)
T ss_dssp GCSHHHHHHHHTTCCHHHHHH
T ss_pred hcCHHHHHHHHhcccHHHHHH
Confidence 356778999999999988765
Done!