Query 025286
Match_columns 255
No_of_seqs 71 out of 73
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 07:18:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j20_A 30S ribosomal protein S 58.4 42 0.0014 29.1 8.2 76 63-143 24-123 (198)
2 2xzm_4 40S ribosomal protein S 35.7 1.4E+02 0.0049 27.0 8.3 80 63-143 37-144 (265)
3 3rgh_A Filamin-A; cell adhesio 31.8 97 0.0033 22.8 5.6 44 61-106 1-45 (100)
4 3w1s_C Ubiquitin-like protein 26.0 32 0.0011 26.2 2.0 36 64-101 2-37 (91)
5 1wz3_A Autophagy 12B, ATG12B, 22.8 37 0.0013 26.0 1.8 34 65-100 8-41 (96)
6 2d7p_A Filamin-C; beta-sandwic 20.5 2.6E+02 0.0088 21.1 6.2 78 63-146 6-88 (112)
7 3qii_A PHD finger protein 20; 18.6 55 0.0019 25.1 1.9 20 114-135 18-37 (85)
8 2e5q_A PHD finger protein 19; 18.6 47 0.0016 24.4 1.5 22 121-144 11-32 (63)
9 3p8d_A Medulloblastoma antigen 16.6 65 0.0022 23.5 1.9 16 117-134 6-21 (67)
10 2e5p_A Protein PHF1, PHD finge 16.3 1.1E+02 0.0039 22.6 3.1 23 121-145 13-35 (68)
No 1
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=58.40 E-value=42 Score=29.06 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=54.4
Q ss_pred CCCCCCCcceEEEecCCCCCCCCCCCceeeeccCCcCcc--------------------eEEEEehhcchhhhcc----c
Q 025286 63 PASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTAN--------------------LTLTISNVINLEQLRG----W 118 (255)
Q Consensus 63 p~~Fnp~KLsV~f~~~~~t~~~PiipRrYTLTHsD~T~~--------------------LfLtIg~~fn~dql~~----w 118 (255)
|+.|+-..+--+.... ...+.+|.+-+|..|.|++ ||==.|.+...|+|.+ |
T Consensus 24 P~~F~~~~iG~T~~~~----~~~l~GRv~EvsL~DL~~d~~~~~~K~kf~i~~V~G~~a~T~F~G~~lT~DklrSlVrk~ 99 (198)
T 3j20_A 24 PDFFGGVEVGLTPADD----PEKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRK 99 (198)
T ss_dssp CSSSSCCCCCEEEEES----SSCCSSCEEEECCCSSTTHHHHHCCCEEEEEEEESSSEEEEEEEEECCCHHHHHHHCCSS
T ss_pred chhcCCceeEEEEccC----cccccCeEEEEEHHHhcCChhhheEEEEEEEEeccCCEEEEEEcceeechhhhhhheecc
Confidence 5788888777776633 4679999999999999987 3444577788887763 5
Q ss_pred cccceEEEEEEecCCeeEEEEEEEE
Q 025286 119 YIKDDVVAEWKKVRDDMCLHVHCYV 143 (255)
Q Consensus 119 ~~RDEVlAEW~~~~g~~~LhVyc~V 143 (255)
.++=|..-.=+. ..+|.|.|+|-.
T Consensus 100 ~s~Iea~vdVkT-~DGy~lRvf~i~ 123 (198)
T 3j20_A 100 TTRIDGIFNITT-KDGYKLRVMAMA 123 (198)
T ss_dssp SCEEEEEEEEEC-TTSCEEEEEEEE
T ss_pred eeEEEEEEEEEe-cCCCEEEEEEEE
Confidence 556565555554 456888888864
No 2
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=35.74 E-value=1.4e+02 Score=27.02 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=53.4
Q ss_pred CCCCCCCcceEEEecC--CCC-CCCCCCCceeeeccCCcCcc---------------------eEEEEehhcchhhhc--
Q 025286 63 PASFEASKLKVVFLGE--GMN-DYSRILPRTYILSHCDFTAN---------------------LTLTISNVINLEQLR-- 116 (255)
Q Consensus 63 p~~Fnp~KLsV~f~~~--~~t-~~~PiipRrYTLTHsD~T~~---------------------LfLtIg~~fn~dql~-- 116 (255)
|+.|+-..+=-+.... |.. ....+.+|.+-+|..|.|++ ||==.|.++..|.|.
T Consensus 37 P~~F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~~~~~rK~kf~i~~V~G~nalT~F~GmdlTrDklrSl 116 (265)
T 2xzm_4 37 PIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSM 116 (265)
T ss_dssp CTTSCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTTTSCCCEEEEEEEEECSSCEEEEEEEEECCHHHHHHS
T ss_pred CcccCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChhhhcceEEEEEEEeecCCEEEEEEeeeeccHHHhhhh
Confidence 5678777776666531 111 23467889999999999888 333456777888776
Q ss_pred --cccccceEEEEEEecCCeeEEEEEEEE
Q 025286 117 --GWYIKDDVVAEWKKVRDDMCLHVHCYV 143 (255)
Q Consensus 117 --~w~~RDEVlAEW~~~~g~~~LhVyc~V 143 (255)
.|.++=|..-.=+. ...|.|.|+|-.
T Consensus 117 VrKw~s~Iea~vdVkT-~DGY~lRvf~i~ 144 (265)
T 2xzm_4 117 IRKWQTLIEARVDCKT-NDGYIIRVFTLA 144 (265)
T ss_dssp CCTTBCEEEEEEEEEE-TTTEEEEEEEEE
T ss_pred hcccceeEEEEEEEEe-CCCcEEEEEEEE
Confidence 36556666655554 557889988863
No 3
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=31.82 E-value=97 Score=22.79 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=30.9
Q ss_pred CCCCCCCCCcceEEEecCCCCCCCCCCCceeeeccCCc-CcceEEEE
Q 025286 61 GPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDF-TANLTLTI 106 (255)
Q Consensus 61 gpp~~Fnp~KLsV~f~~~~~t~~~PiipRrYTLTHsD~-T~~LfLtI 106 (255)
|.|..+||+|..+. |.|+.+...-.|..+|+.=.|. .++|...|
T Consensus 1 ~~~~~~d~skv~~~--GpGL~~~~vg~~~~F~V~~~~aG~~~l~v~i 45 (100)
T 3rgh_A 1 GAMDPFDASKVKCS--GPGLERATAGEVGQFQVDCSSAGSAELTIEI 45 (100)
T ss_dssp --CCCCCGGGCEEE--SGGGTEEETTSCEEEEEECTTSCSCCEEEEE
T ss_pred CCcCCcccccCEEE--CCCcCCeEcCCcEEEEEEECCCCCceEEEEE
Confidence 45788999999996 5677655556788899988884 33466666
No 4
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=26.03 E-value=32 Score=26.23 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=18.2
Q ss_pred CCCCCCcceEEEecCCCCCCCCCCCceeeeccCCcCcc
Q 025286 64 ASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTAN 101 (255)
Q Consensus 64 ~~Fnp~KLsV~f~~~~~t~~~PiipRrYTLTHsD~T~~ 101 (255)
+.++++|..|.|.+.| ..+.+..++|.+.-++--++
T Consensus 2 ~~~~~~Kv~vrfk~~g--~~P~l~k~KflV~~~~t~~~ 37 (91)
T 3w1s_C 2 AHMNIQKIQIKFQPIG--SIGQLKPSVCKISMSQSFAM 37 (91)
T ss_dssp ----CCEEEEEEEECC--C-------EEEEETTSBHHH
T ss_pred CCCCCCeEEEEEEecC--CCCcccccEEEcCCCCCHHH
Confidence 4789999999997544 45677788998876654443
No 5
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=22.78 E-value=37 Score=26.03 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=20.6
Q ss_pred CCCCCcceEEEecCCCCCCCCCCCceeeeccCCcCc
Q 025286 65 SFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTA 100 (255)
Q Consensus 65 ~Fnp~KLsV~f~~~~~t~~~PiipRrYTLTHsD~T~ 100 (255)
..+++|+.|.|... ...+.+..++|.+.-++.-+
T Consensus 8 ~~~~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~ 41 (96)
T 1wz3_A 8 PNSVQKIVVHLRAT--GGAPILKQSKFKVSGSDKFA 41 (96)
T ss_dssp ----CEEEEEEEEC--TTCCCCSCCEEEEETTSBTH
T ss_pred CCCCCeEEEEEEEC--CCCCcccccEEEeCCCCcHH
Confidence 37899999999744 33556677888776554433
No 6
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=20.51 E-value=2.6e+02 Score=21.13 Aligned_cols=78 Identities=9% Similarity=0.071 Sum_probs=47.6
Q ss_pred CCCCCCCcceEEEecCCCCCCCCCCCceeeeccCCcCcceEEEEehhcc---hhhhccccccc-eEEEEEE-ecCCeeEE
Q 025286 63 PASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVIN---LEQLRGWYIKD-DVVAEWK-KVRDDMCL 137 (255)
Q Consensus 63 p~~Fnp~KLsV~f~~~~~t~~~PiipRrYTLTHsD~T~~LfLtIg~~fn---~dql~~w~~RD-EVlAEW~-~~~g~~~L 137 (255)
++..||+|+.|. |.+......-.|=.+|++-.|..++|...|-.--. .-+++ .+.| -...++. +..|.|.+
T Consensus 6 ~~~~Daskv~~~--g~~~~~~~vg~~~~F~V~~~~a~g~l~v~V~~P~g~~~~~~v~--d~~~gty~v~ytP~~~G~h~v 81 (112)
T 2d7p_A 6 SGSDDARRLTVT--SLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVS--ELDSDKHTIRFIPHENGVHSI 81 (112)
T ss_dssp CCSCGGGGCEEC--SSCSBCCCTTCCEEEEEECTTCCSCEEEEEECSSSCBCCCEEC--SCBTTEEEEEECCSSCEEEEE
T ss_pred cCCCCcceeEEe--CCCcCCcccCCcEEEEEEeCCCCCCEEEEEECCCCCeeeeEEE--eCCCCeEEEEEEcCCCEeEEE
Confidence 468899999886 55554444456678999999999999988843111 11233 2333 3555665 33456665
Q ss_pred EEEEEEeCC
Q 025286 138 HVHCYVSGP 146 (255)
Q Consensus 138 hVyc~VsG~ 146 (255)
+|. +.|.
T Consensus 82 ~V~--~~g~ 88 (112)
T 2d7p_A 82 DVK--FNGA 88 (112)
T ss_dssp EEE--ESSC
T ss_pred EEE--ECCe
Confidence 554 4454
No 7
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=18.61 E-value=55 Score=25.06 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=12.7
Q ss_pred hhccccccceEEEEEEecCCee
Q 025286 114 QLRGWYIKDDVVAEWKKVRDDM 135 (255)
Q Consensus 114 ql~~w~~RDEVlAEW~~~~g~~ 135 (255)
+-..|.--|+|+|.| .+++|
T Consensus 18 ~~~~f~vGd~VlArW--~D~~y 37 (85)
T 3qii_A 18 GSSEFQINEQVLACW--SDCRF 37 (85)
T ss_dssp ---CCCTTCEEEEEC--TTSCE
T ss_pred CCcccccCCEEEEEe--CCCCE
Confidence 445576779999999 45443
No 8
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=18.56 E-value=47 Score=24.41 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=15.4
Q ss_pred cceEEEEEEecCCeeEEEEEEEEe
Q 025286 121 KDDVVAEWKKVRDDMCLHVHCYVS 144 (255)
Q Consensus 121 RDEVlAEW~~~~g~~~LhVyc~Vs 144 (255)
=++|||+|. +|.++|=--+-|+
T Consensus 11 GqdVLarWs--DGlfYlgtV~kV~ 32 (63)
T 2e5q_A 11 GQYVLCRWT--DGLYYLGKIKRVS 32 (63)
T ss_dssp TCEEEEECT--TSCEEEEEECCCC
T ss_pred CCEEEEEec--CCCEEEEEEEEEe
Confidence 489999996 5777775444443
No 9
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=16.63 E-value=65 Score=23.47 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=12.0
Q ss_pred cccccceEEEEEEecCCe
Q 025286 117 GWYIKDDVVAEWKKVRDD 134 (255)
Q Consensus 117 ~w~~RDEVlAEW~~~~g~ 134 (255)
.|.--|+|+|.| .++.
T Consensus 6 ~~~vGd~vmArW--~D~~ 21 (67)
T 3p8d_A 6 EFQINEQVLACW--SDCR 21 (67)
T ss_dssp CCCTTCEEEEEC--TTSC
T ss_pred ccccCCEEEEEc--CCCC
Confidence 466679999999 4443
No 10
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=16.28 E-value=1.1e+02 Score=22.64 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=17.5
Q ss_pred cceEEEEEEecCCeeEEEEEEEEeC
Q 025286 121 KDDVVAEWKKVRDDMCLHVHCYVSG 145 (255)
Q Consensus 121 RDEVlAEW~~~~g~~~LhVyc~VsG 145 (255)
=++|||+|. +|-++|=--+-|+.
T Consensus 13 GqdVLarWs--DGlfYlGtV~kV~~ 35 (68)
T 2e5p_A 13 GQDVLARWT--DGLLYLGTIKKVDS 35 (68)
T ss_dssp TCEEEEECT--TSSEEEEEEEEEET
T ss_pred CCEEEEEec--CCcEEEeEEEEEec
Confidence 389999996 48888876666654
Done!