BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025287
MGEKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRD
KLCCKGEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQ
PEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPV
PCHPPVGVCCRECYEGRGGGPCYDLGYGQTRHYDGYCGRPVYEGWAGGCDTRDYYRSRCS
DYICEENPTAPCTIM

High Scoring Gene Products

Symbol, full name Information P value
AT4G16380 protein from Arabidopsis thaliana 7.6e-29
AT1G51090 protein from Arabidopsis thaliana 1.1e-22
AT1G49420 protein from Arabidopsis thaliana 2.4e-19

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025287
        (255 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1006589875 - symbol:AT4G16380 species:3702 "Ar...   224  7.6e-29   2
TAIR|locus:2026042 - symbol:AT1G51090 species:3702 "Arabi...   205  1.1e-22   2
TAIR|locus:2010192 - symbol:AT1G49420 species:3702 "Arabi...   185  2.4e-19   2


>TAIR|locus:1006589875 [details] [associations]
            symbol:AT4G16380 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
            InterPro:IPR006121 GO:GO:0009506 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0046872 EMBL:AL161543 GO:GO:0030001
            SUPFAM:SSF55008 IPI:IPI00895677 RefSeq:NP_974559.5 UniGene:At.24999
            ProteinModelPortal:B3H4A8 SMR:B3H4A8 PRIDE:B3H4A8
            EnsemblPlants:AT4G16380.1 GeneID:2745712 KEGG:ath:AT4G16380
            TAIR:At4g16380 eggNOG:NOG294964 HOGENOM:HOG000091096 OMA:DYFSEEN
            ProtClustDB:CLSN2927421 Genevestigator:B3H4A8 Uniprot:B3H4A8
        Length = 254

 Score = 224 (83.9 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 45/75 (60%), Positives = 54/75 (72%)

Query:     2 GEKKVTTMVLKVDLQCSXXXXXXXXXXXXFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDK 61
             G++KVT M LKVDL C+            FPQI+DQ+FDEK+N V IKVVCCSPE+I DK
Sbjct:     5 GKEKVTMMKLKVDLDCAKCYKKVKKVLCKFPQIRDQLFDEKSNIVIIKVVCCSPERIMDK 64

Query:    62 LCCKGEGSIKSIAIL 76
             LC KG GSIK+I I+
Sbjct:    65 LCSKGGGSIKTIEIV 79

 Score = 112 (44.5 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 27/56 (48%), Positives = 33/56 (58%)

Query:   206 GYGQT-RHYDGYCGRPVYEGWAGGCDT-----RDYYRSRCSDYICEENPTAPCTIM 255
             GYG   + Y+ Y GRPVYE W GGC       R  + +RC DY  EENP + C+IM
Sbjct:   202 GYGMPPQPYECY-GRPVYESWGGGCPPPPPAYRQCHVTRC-DYFSEENPQS-CSIM 254

 Score = 41 (19.5 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query:   212 HYDGYCGRPVYEGW 225
             +YDGY G P + G+
Sbjct:   191 YYDGY-GGPAFNGY 203

 Score = 35 (17.4 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query:   217 CGRPVYEGWAG 227
             CG P Y+G+ G
Sbjct:   188 CG-PYYDGYGG 197


>TAIR|locus:2026042 [details] [associations]
            symbol:AT1G51090 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] [GO:0050832 "defense response to fungus"
            evidence=IEP] [GO:0009409 "response to cold" evidence=RCA]
            [GO:0009414 "response to water deprivation" evidence=RCA]
            [GO:0009737 "response to abscisic acid stimulus" evidence=RCA]
            InterPro:IPR006121 Pfam:PF00403 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0050832 GO:GO:0046872 GO:GO:0030001
            SUPFAM:SSF55008 EMBL:AC079828 HOGENOM:HOG000091096 EMBL:AY035097
            EMBL:AY062944 IPI:IPI00520148 PIR:B96548 RefSeq:NP_175520.1
            UniGene:At.17181 ProteinModelPortal:Q9C684 SMR:Q9C684
            EnsemblPlants:AT1G51090.1 GeneID:841532 KEGG:ath:AT1G51090
            TAIR:At1g51090 eggNOG:euNOG12392 InParanoid:Q9C684 OMA:CHEDMNS
            PhylomeDB:Q9C684 ProtClustDB:CLSN2912835 ArrayExpress:Q9C684
            Genevestigator:Q9C684 Uniprot:Q9C684
        Length = 171

 Score = 205 (77.2 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 41/73 (56%), Positives = 50/73 (68%)

Query:     4 KKVTTMVLKVDLQCSXXXXXXXXXXXXFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLC 63
             +KV  M LKVDL CS            FPQI D++FDEK+NT+ IKVVC  PE++ +KLC
Sbjct:     3 EKVVMMKLKVDLNCSKCYKKVKKAIRKFPQITDELFDEKSNTIIIKVVCYDPERLMNKLC 62

Query:    64 CKGEGSIKSIAIL 76
              KG+GSIKSI IL
Sbjct:    63 YKGDGSIKSIVIL 75

 Score = 72 (30.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 16/36 (44%), Positives = 18/36 (50%)

Query:   207 YGQTRHYDGYCGRPVYEGWAGG--CDTRDYYRSRCS 240
             Y + + Y  Y GRPVYE W GG  C   D     CS
Sbjct:   135 YYEAQQYQCY-GRPVYESWGGGRQCCHEDMNSQGCS 169


>TAIR|locus:2010192 [details] [associations]
            symbol:AT1G49420 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] InterPro:IPR006121 EMBL:CP002684 GO:GO:0046872
            GO:GO:0030001 SUPFAM:SSF55008 IPI:IPI00527771 RefSeq:NP_175367.2
            UniGene:At.52095 ProteinModelPortal:F4I1R5
            EnsemblPlants:AT1G49420.1 GeneID:841366 KEGG:ath:AT1G49420
            OMA:NGYDERP Uniprot:F4I1R5
        Length = 189

 Score = 185 (70.2 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
 Identities = 38/73 (52%), Positives = 47/73 (64%)

Query:     2 GEKKVTTMVLKVD-LQCSXXXXXXXXXXXXFPQIQDQIFDEKTNTVRIKVVCCSPEKIRD 60
             G++KVT M LK + L                PQ++DQ F+E+TNTV IKVVCCSPEK+ D
Sbjct:     5 GKEKVTWMKLKTEPLSNEKNFSKVKKALSSIPQVRDQKFEEETNTVTIKVVCCSPEKVMD 64

Query:    61 KLCCKGEGSIKSI 73
             KLC KG G+IK I
Sbjct:    65 KLCSKGRGAIKLI 77

 Score = 60 (26.2 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query:   207 YGQTRHYDGYCGRPVYEGWAGGCDTRDYYRSRCSDYICEENPTAPCTIM 255
             YG +R  +GY  RP+Y  + G       Y  R S Y  EE P+  C+IM
Sbjct:   146 YGWSRP-NGYDERPIYNSYGGWQPPPSQYGGR-SHYE-EEQPS--CSIM 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.141   0.470    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      255       125   0.00091  102 3  11 22  0.37    31
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.47u 0.12s 9.59t   Elapsed:  00:00:00
  Total cpu time:  9.47u 0.12s 9.59t   Elapsed:  00:00:00
  Start:  Fri May 10 02:13:33 2013   End:  Fri May 10 02:13:33 2013

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