Query 025287
Match_columns 255
No_of_seqs 160 out of 1145
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 07:20:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iwl_A Copper transport protei 99.5 4.2E-14 1.4E-18 99.4 8.6 67 6-78 1-67 (68)
2 1cc8_A Protein (metallochapero 99.5 4E-13 1.4E-17 94.7 9.6 65 1-68 1-66 (73)
3 3dxs_X Copper-transporting ATP 99.4 2.5E-12 8.4E-17 90.4 8.9 63 6-68 1-66 (74)
4 4a4j_A Pacszia, cation-transpo 99.4 2.8E-12 9.7E-17 88.7 8.8 62 7-68 2-65 (69)
5 3fry_A Probable copper-exporti 99.3 8.2E-12 2.8E-16 88.5 7.6 61 5-68 3-64 (73)
6 2crl_A Copper chaperone for su 99.3 1.9E-11 6.5E-16 92.9 9.9 69 6-79 18-86 (98)
7 2xmm_A SSR2857 protein, ATX1; 99.3 9E-12 3.1E-16 82.8 6.4 60 8-68 2-62 (64)
8 2qif_A Copper chaperone COPZ; 99.3 3.3E-11 1.1E-15 79.8 8.8 63 6-68 1-66 (69)
9 1mwy_A ZNTA; open-faced beta-s 99.2 5.7E-11 1.9E-15 82.2 8.9 63 6-68 2-65 (73)
10 2roe_A Heavy metal binding pro 99.2 1.2E-11 4.1E-16 84.4 4.9 59 9-68 2-61 (66)
11 2l3m_A Copper-ION-binding prot 99.2 9.2E-11 3.1E-15 79.8 9.1 63 6-68 4-69 (71)
12 1opz_A Potential copper-transp 99.2 6.1E-11 2.1E-15 81.0 8.0 67 1-68 1-70 (76)
13 2xmw_A PACS-N, cation-transpor 99.2 1.1E-10 3.8E-15 78.9 9.0 62 7-68 3-66 (71)
14 1yg0_A COP associated protein; 99.2 6.1E-11 2.1E-15 79.2 7.5 61 8-68 2-64 (66)
15 1osd_A MERP, hypothetical prot 99.2 1.3E-10 4.3E-15 79.1 8.7 63 6-68 2-67 (72)
16 2k2p_A Uncharacterized protein 99.2 4.8E-11 1.7E-15 88.4 6.4 63 5-68 20-83 (85)
17 1q8l_A Copper-transporting ATP 99.1 1.5E-10 5E-15 83.3 8.3 68 1-68 3-73 (84)
18 1aw0_A Menkes copper-transport 99.1 1.7E-10 5.6E-15 78.5 7.9 61 8-68 4-67 (72)
19 1yjr_A Copper-transporting ATP 99.1 1.4E-10 4.9E-15 79.4 7.5 65 1-68 1-68 (75)
20 3cjk_B Copper-transporting ATP 99.1 4.5E-10 1.5E-14 77.5 9.3 62 7-68 2-66 (75)
21 1cpz_A Protein (COPZ); copper 99.1 3.6E-10 1.2E-14 75.7 8.4 60 9-68 2-64 (68)
22 1kvi_A Copper-transporting ATP 99.1 2.8E-10 9.4E-15 79.6 8.0 64 5-68 6-72 (79)
23 2kyz_A Heavy metal binding pro 99.1 1.1E-10 3.9E-15 79.9 5.8 57 9-68 3-60 (67)
24 1y3j_A Copper-transporting ATP 99.1 1.7E-10 6E-15 80.5 6.6 63 6-68 2-67 (77)
25 2kt2_A Mercuric reductase; nme 99.1 1.9E-10 6.4E-15 78.1 6.6 60 9-68 2-63 (69)
26 2ldi_A Zinc-transporting ATPas 99.1 2E-10 6.9E-15 76.9 6.4 63 6-68 2-67 (71)
27 1fvq_A Copper-transporting ATP 99.1 5E-10 1.7E-14 76.1 7.8 61 8-68 3-65 (72)
28 2g9o_A Copper-transporting ATP 99.0 8.8E-10 3E-14 81.2 8.7 59 7-65 3-64 (90)
29 1jww_A Potential copper-transp 99.0 6.6E-10 2.3E-14 77.1 6.8 63 6-68 2-67 (80)
30 2ofg_X Zinc-transporting ATPas 99.0 1.2E-09 4.1E-14 84.0 8.6 64 5-68 6-72 (111)
31 2aj0_A Probable cadmium-transp 99.0 1.7E-09 5.8E-14 74.5 7.3 56 8-68 4-60 (71)
32 2kkh_A Putative heavy metal tr 99.0 3.1E-09 1.1E-13 78.2 8.9 64 5-68 14-80 (95)
33 2ew9_A Copper-transporting ATP 98.9 3.2E-09 1.1E-13 82.2 8.0 62 7-68 80-144 (149)
34 1qup_A Superoxide dismutase 1 98.9 7.2E-09 2.5E-13 90.8 9.6 61 7-68 6-66 (222)
35 2ew9_A Copper-transporting ATP 98.9 5.8E-09 2E-13 80.8 8.0 63 6-68 3-68 (149)
36 1p6t_A Potential copper-transp 98.8 4.7E-09 1.6E-13 81.9 6.9 62 7-68 74-138 (151)
37 1jk9_B CCS, copper chaperone f 98.8 1.3E-08 4.3E-13 90.9 8.3 62 6-68 6-67 (249)
38 2rop_A Copper-transporting ATP 98.8 2.5E-08 8.6E-13 82.9 9.0 62 7-68 122-186 (202)
39 2rop_A Copper-transporting ATP 98.6 4.7E-08 1.6E-12 81.2 6.8 61 5-65 18-81 (202)
40 1p6t_A Potential copper-transp 98.5 3E-07 1E-11 71.6 8.7 63 6-68 5-70 (151)
41 3j09_A COPA, copper-exporting 98.2 1.9E-06 6.4E-11 86.2 8.1 61 8-68 3-66 (723)
42 3bpd_A Uncharacterized protein 95.9 0.017 5.8E-07 45.8 6.2 73 1-74 1-80 (100)
43 2raq_A Conserved protein MTH88 94.5 0.081 2.8E-06 41.7 6.1 73 1-74 1-80 (97)
44 2x3d_A SSO6206; unknown functi 92.1 0.3 1E-05 38.4 5.9 68 5-74 3-79 (96)
45 2jsx_A Protein NAPD; TAT, proo 84.7 11 0.00039 28.6 10.5 59 19-78 17-77 (95)
46 1owx_A Lupus LA protein, SS-B, 77.5 7 0.00024 31.1 6.9 55 9-65 19-76 (121)
47 3cq1_A Putative uncharacterize 76.7 3.5 0.00012 31.1 4.8 35 8-42 42-82 (103)
48 2cpq_A FragIle X mental retard 76.1 6.7 0.00023 30.0 6.2 39 23-63 35-73 (91)
49 3lno_A Putative uncharacterize 73.5 3.9 0.00013 31.4 4.3 35 8-42 45-86 (108)
50 1uwd_A Hypothetical protein TM 71.8 5.3 0.00018 30.0 4.7 35 8-42 43-83 (103)
51 2kgs_A Uncharacterized protein 63.8 4.1 0.00014 32.5 2.7 29 25-54 67-95 (132)
52 3lvj_C Sulfurtransferase TUSA; 58.4 23 0.0008 25.6 5.8 51 9-68 11-63 (82)
53 2cvi_A 75AA long hypothetical 57.2 47 0.0016 23.3 8.7 58 9-67 4-61 (83)
54 1jdq_A TM006 protein, hypothet 57.0 34 0.0011 25.9 6.7 51 9-68 27-79 (98)
55 2ytc_A PRE-mRNA-splicing facto 52.7 47 0.0016 22.5 6.4 56 8-65 12-68 (85)
56 2fy1_A RNA-binding motif prote 51.3 52 0.0018 24.4 6.9 57 9-67 8-70 (116)
57 2la4_A Nuclear and cytoplasmic 50.1 64 0.0022 22.7 7.4 58 9-68 28-86 (101)
58 1x4g_A Nucleolysin TIAR; struc 48.9 72 0.0025 22.9 7.3 58 8-67 25-83 (109)
59 1t1v_A SH3BGRL3, SH3 domain-bi 47.2 23 0.00078 25.2 4.1 48 8-67 3-55 (93)
60 2cpj_A Non-POU domain-containi 47.1 61 0.0021 22.8 6.5 54 10-65 17-71 (99)
61 3md1_A Nuclear and cytoplasmic 45.7 66 0.0022 21.6 6.9 58 9-68 2-66 (83)
62 1x4c_A Splicing factor, argini 45.5 83 0.0028 22.7 7.8 59 9-70 16-75 (108)
63 2cq3_A RNA-binding protein 9; 44.8 80 0.0027 22.3 7.9 58 8-67 15-77 (103)
64 2vh7_A Acylphosphatase-1; hydr 41.4 1.1E+02 0.0037 22.9 8.9 71 5-76 6-82 (99)
65 2yy3_A Elongation factor 1-bet 41.0 44 0.0015 25.5 5.0 36 5-40 49-86 (91)
66 2lxf_A Uncharacterized protein 40.6 1.4E+02 0.0046 23.7 8.7 71 5-77 32-108 (121)
67 1why_A Hypothetical protein ri 40.2 93 0.0032 21.7 7.5 60 9-70 18-78 (97)
68 2dgo_A Cytotoxic granule-assoc 39.6 1E+02 0.0036 22.1 7.0 57 8-66 15-78 (115)
69 1x4a_A Splicing factor, argini 39.0 1E+02 0.0036 22.0 7.3 58 9-68 23-84 (109)
70 3ex7_B RNA-binding protein 8A; 38.8 1E+02 0.0035 22.6 6.8 58 8-67 22-86 (126)
71 1whx_A Hypothetical protein ri 38.6 1.1E+02 0.0039 22.3 7.2 57 7-65 9-66 (111)
72 2ctf_A Vigilin; K homology typ 38.6 42 0.0014 25.5 4.6 42 22-64 47-88 (102)
73 1wg1_A KIAA1579 protein, homol 38.1 44 0.0015 23.2 4.4 56 9-67 6-62 (88)
74 3pro_C Alpha-lytic protease; P 36.8 92 0.0032 26.0 6.8 44 32-76 114-157 (166)
75 1je3_A EC005, hypothetical 8.6 36.8 58 0.002 24.6 5.1 51 9-68 28-80 (97)
76 2zbc_A 83AA long hypothetical 36.6 1E+02 0.0034 21.1 8.8 47 21-67 15-61 (83)
77 2x1f_A MRNA 3'-END-processing 36.2 1.1E+02 0.0037 21.3 7.2 57 10-68 4-67 (96)
78 1fo5_A Thioredoxin; disulfide 36.0 52 0.0018 21.6 4.3 36 8-43 5-44 (85)
79 1zzo_A RV1677; thioredoxin fol 35.5 1.1E+02 0.0039 21.4 8.1 33 10-42 30-65 (136)
80 1whw_A Hypothetical protein ri 35.1 1.1E+02 0.0039 21.2 7.0 58 8-67 8-72 (99)
81 2fgc_A Acetolactate synthase, 34.8 2.2E+02 0.0074 24.4 9.4 68 8-77 29-102 (193)
82 2do0_A HnRNP M, heterogeneous 34.6 1.1E+02 0.0037 21.9 6.2 57 9-67 16-78 (114)
83 2ct6_A SH3 domain-binding glut 34.5 33 0.0011 25.6 3.4 45 9-65 10-59 (111)
84 2o8l_A V8 protease, taphylococ 34.4 8.4 0.00029 33.4 0.0 13 56-68 200-212 (274)
85 3beg_B Splicing factor, argini 34.2 95 0.0033 22.8 6.0 56 9-67 17-73 (115)
86 2khp_A Glutaredoxin; thioredox 33.9 54 0.0018 22.6 4.3 33 8-42 7-39 (92)
87 2djw_A Probable transcriptiona 33.4 1.3E+02 0.0043 21.3 7.7 46 21-66 15-60 (92)
88 2fwh_A Thiol:disulfide interch 33.4 79 0.0027 23.3 5.4 33 9-41 34-73 (134)
89 1pqs_A Cell division control p 32.6 65 0.0022 23.7 4.6 65 8-76 3-75 (77)
90 1wf1_A RNA-binding protein RAL 32.4 1.1E+02 0.0039 21.9 6.0 55 9-67 28-84 (110)
91 2ko1_A CTR148A, GTP pyrophosph 32.4 84 0.0029 21.4 5.1 16 22-37 60-75 (88)
92 2cpz_A CUG triplet repeat RNA- 32.1 1.2E+02 0.0041 21.9 6.1 58 9-68 26-90 (115)
93 3ulh_A THO complex subunit 4; 32.1 1.3E+02 0.0046 21.2 7.0 58 9-68 30-93 (107)
94 2dnh_A Bruno-like 5, RNA bindi 31.9 1.3E+02 0.0046 21.1 6.8 59 8-68 15-79 (105)
95 2hvz_A Splicing factor, argini 31.8 1.3E+02 0.0043 21.1 6.1 53 10-64 2-56 (101)
96 2dnq_A RNA-binding protein 4B; 31.4 1.3E+02 0.0043 20.7 7.6 56 8-67 8-64 (90)
97 2cph_A RNA binding motif prote 31.2 1.4E+02 0.0047 21.0 6.4 56 8-65 15-78 (107)
98 1rk8_A CG8781-PA, CG8781-PA pr 30.2 1.5E+02 0.0052 23.0 6.9 58 8-67 72-136 (165)
99 4gwb_A Peptide methionine sulf 30.2 86 0.0029 26.4 5.6 47 19-65 10-73 (168)
100 2dgv_A HnRNP M, heterogeneous 30.2 1.3E+02 0.0045 20.5 7.0 57 9-67 9-70 (92)
101 2hiy_A Hypothetical protein; C 29.8 1E+02 0.0035 25.7 6.0 42 21-64 24-65 (183)
102 2err_A Ataxin-2-binding protei 29.8 1.4E+02 0.0047 21.6 6.2 58 8-67 29-91 (109)
103 3pgw_S U1-70K; protein-RNA com 29.7 1.4E+02 0.0049 27.7 7.6 61 9-71 103-170 (437)
104 1wex_A Hypothetical protein (r 29.7 1.7E+02 0.0057 21.5 7.3 53 9-63 16-69 (104)
105 4a8x_A RNA-binding protein wit 29.6 1.3E+02 0.0044 20.2 6.0 58 8-67 4-69 (88)
106 4a17_W RPL31, 60S ribosomal pr 29.5 60 0.0021 25.8 4.2 54 1-69 1-65 (111)
107 1x5p_A Negative elongation fac 29.3 1.5E+02 0.005 20.7 7.5 55 9-67 16-71 (97)
108 2j58_A WZA, outer membrane lip 29.2 83 0.0028 28.8 5.8 67 10-76 113-196 (359)
109 1urr_A CG18505 protein; acylph 29.0 1.8E+02 0.0062 21.8 8.2 71 5-76 9-85 (102)
110 3lh2_S 4E10_1VI7A_S0_002_N (T8 29.0 78 0.0027 22.1 4.5 45 21-68 19-66 (76)
111 1x5s_A Cold-inducible RNA-bind 28.1 1.5E+02 0.0053 20.6 6.2 55 9-65 13-74 (102)
112 3bs9_A Nucleolysin TIA-1 isofo 28.1 1.4E+02 0.0047 20.1 7.1 57 9-67 7-70 (87)
113 1th5_A NIFU1; iron-sulfur clus 28.0 43 0.0015 24.5 3.0 52 22-76 7-73 (74)
114 2ywk_A Putative RNA-binding pr 27.6 1.5E+02 0.0051 20.3 6.7 56 10-67 18-79 (95)
115 2e0q_A Thioredoxin; electron t 27.2 1.4E+02 0.0046 19.9 5.4 35 9-43 19-57 (104)
116 1q1o_A Cell division control p 27.1 1.5E+02 0.005 23.0 6.0 64 9-76 25-96 (98)
117 2dgw_A Probable RNA-binding pr 27.1 1.5E+02 0.0051 20.3 5.7 56 8-67 10-71 (91)
118 2dng_A Eukaryotic translation 27.0 1.7E+02 0.0057 20.6 6.7 52 8-62 15-73 (103)
119 2dnz_A Probable RNA-binding pr 26.7 1.6E+02 0.0053 20.2 7.5 55 9-65 6-67 (95)
120 2zzt_A Putative uncharacterize 26.7 1.1E+02 0.0039 22.7 5.2 29 21-49 12-43 (107)
121 2do4_A Squamous cell carcinoma 26.4 1.7E+02 0.0057 20.4 6.6 55 9-65 18-78 (100)
122 1r7h_A NRDH-redoxin; thioredox 26.4 94 0.0032 20.0 4.3 32 9-42 3-34 (75)
123 1fvg_A Peptide methionine sulf 25.7 1E+02 0.0035 26.7 5.4 49 13-64 48-117 (199)
124 1x4e_A RNA binding motif, sing 25.6 1.2E+02 0.0042 20.4 4.9 54 9-64 6-66 (85)
125 3qfa_C Thioredoxin; protein-pr 25.5 1.2E+02 0.0043 21.6 5.2 35 9-43 34-72 (116)
126 2jvo_A Nucleolar protein 3; nu 25.4 2E+02 0.0067 20.9 7.2 57 8-68 31-88 (108)
127 1u6f_A Tcubp1, RNA-binding pro 25.4 1.4E+02 0.0047 22.3 5.5 55 9-65 43-104 (139)
128 1b7f_A Protein (SXL-lethal pro 25.2 2.1E+02 0.0072 21.2 7.7 58 9-68 90-154 (168)
129 1pqx_A Conserved hypothetical 24.7 1.2E+02 0.0042 22.9 5.1 45 22-68 39-84 (91)
130 1p1t_A Cleavage stimulation fa 24.7 1.4E+02 0.0047 20.9 5.2 56 10-67 10-72 (104)
131 2d9p_A Polyadenylate-binding p 24.6 1.2E+02 0.0041 21.3 4.9 56 8-65 15-75 (103)
132 2dgu_A Heterogeneous nuclear r 24.5 1.9E+02 0.0064 20.4 6.0 53 9-65 12-65 (103)
133 3flj_A Uncharacterized protein 24.1 37 0.0013 27.8 2.2 38 30-68 102-139 (155)
134 3mdf_A Peptidyl-prolyl CIS-tra 23.9 1.7E+02 0.0057 19.6 6.3 58 9-68 8-72 (85)
135 1qd1_A Formiminotransferase-cy 23.9 80 0.0028 29.4 4.6 51 21-72 19-71 (325)
136 2gjh_A Designed protein; oblig 23.7 1.7E+02 0.0057 20.6 5.2 42 9-51 4-49 (62)
137 3ia1_A THIO-disulfide isomeras 23.6 2.2E+02 0.0074 20.8 7.7 32 9-41 33-68 (154)
138 2khc_A Testis-specific RNP-typ 23.6 2.1E+02 0.0071 20.6 6.3 58 8-67 40-104 (118)
139 2e44_A Insulin-like growth fac 23.5 1.8E+02 0.0063 20.0 6.1 57 9-67 16-76 (96)
140 3gnj_A Thioredoxin domain prot 23.3 1.6E+02 0.0055 20.1 5.2 34 10-43 26-64 (111)
141 2k1h_A Uncharacterized protein 23.1 2.1E+02 0.0073 21.7 6.2 43 22-66 39-82 (94)
142 1vq8_X 50S ribosomal protein L 23.1 93 0.0032 23.9 4.1 53 1-68 1-65 (92)
143 2ku7_A MLL1 PHD3-CYP33 RRM chi 23.0 2.3E+02 0.0077 20.8 6.6 56 8-65 63-125 (140)
144 2e5h_A Zinc finger CCHC-type a 22.9 1.9E+02 0.0064 19.8 6.0 56 10-67 18-80 (94)
145 3m05_A Uncharacterized protein 22.9 2.3E+02 0.0078 22.3 6.5 58 18-79 15-79 (114)
146 1h75_A Glutaredoxin-like prote 22.8 1.2E+02 0.004 20.1 4.3 31 9-41 3-33 (81)
147 2cqb_A Peptidyl-prolyl CIS-tra 22.7 1.4E+02 0.005 20.8 5.0 55 9-65 13-74 (102)
148 3mso_A Steroid delta-isomerase 22.6 43 0.0015 26.0 2.2 38 30-68 95-132 (143)
149 2o8l_A V8 protease, taphylococ 22.5 18 0.00062 31.2 0.0 9 60-68 200-208 (274)
150 1qys_A TOP7; alpha-beta, novel 22.5 1.8E+02 0.0063 22.2 5.6 45 6-51 45-93 (106)
151 2e9h_A EIF-5, eukaryotic trans 22.5 92 0.0032 26.0 4.3 30 35-65 70-99 (157)
152 2cq1_A PTB-like protein L; RRM 22.5 2.3E+02 0.0079 20.7 6.2 53 9-63 16-69 (101)
153 3bqh_A PILB, peptide methionin 22.5 1.4E+02 0.0048 25.6 5.6 48 14-64 8-76 (193)
154 3die_A Thioredoxin, TRX; elect 22.2 1.9E+02 0.0063 19.5 5.4 34 9-42 22-60 (106)
155 2wbr_A GW182, gawky, LD47780P; 22.2 2E+02 0.0068 21.6 5.8 54 10-65 9-63 (89)
156 3hz7_A Uncharacterized protein 21.8 76 0.0026 23.3 3.3 50 10-68 3-55 (87)
157 2f1f_A Acetolactate synthase i 21.5 3.4E+02 0.012 22.2 7.7 66 8-75 3-74 (164)
158 2nyt_A Probable C->U-editing e 21.5 71 0.0024 27.1 3.5 33 8-40 84-117 (190)
159 1x5u_A Splicing factor 3B subu 21.4 2.1E+02 0.0073 19.9 6.5 55 9-65 16-77 (105)
160 1dtj_A RNA-binding neurooncolo 21.2 2.1E+02 0.007 19.6 5.7 51 8-62 4-66 (76)
161 3m9j_A Thioredoxin; oxidoreduc 21.1 2E+02 0.0067 19.4 5.3 36 9-44 23-62 (105)
162 4euy_A Uncharacterized protein 21.1 2E+02 0.007 19.7 5.5 36 9-44 21-60 (105)
163 1gxu_A Hydrogenase maturation 21.1 2.5E+02 0.0086 20.6 8.7 74 1-77 1-78 (91)
164 1p27_B RNA-binding protein 8A; 21.0 2.2E+02 0.0075 19.9 6.6 56 8-65 23-85 (106)
165 2cpf_A RNA binding motif prote 21.0 2.1E+02 0.0072 19.7 6.2 57 9-67 6-72 (98)
166 2e5i_A Heterogeneous nuclear r 21.0 2.9E+02 0.0099 21.3 7.9 61 8-70 25-87 (124)
167 2vim_A Thioredoxin, TRX; thior 20.7 2E+02 0.0068 19.3 5.3 35 9-43 22-60 (104)
168 2vm1_A Thioredoxin, thioredoxi 20.6 1.9E+02 0.0065 19.9 5.2 35 9-43 31-69 (118)
169 1oo0_B CG8781-PA, drosophila Y 20.5 2.3E+02 0.008 20.0 7.1 59 8-68 26-91 (110)
170 2bjd_A Acylphosphatase; hypert 20.4 2.8E+02 0.0095 20.8 7.6 71 6-77 13-88 (101)
171 2dnp_A RNA-binding protein 14; 20.0 2.2E+02 0.0074 19.4 6.0 55 9-67 10-65 (90)
172 1wik_A Thioredoxin-like protei 20.0 1.5E+02 0.005 21.6 4.6 32 9-42 17-53 (109)
No 1
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=99.52 E-value=4.2e-14 Score=99.43 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=60.1
Q ss_pred ceEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCccceeEEeCC
Q 025287 6 VTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAILEP 78 (255)
Q Consensus 6 vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~IK~IEIVsp 78 (255)
|++++|+|+|+|.+|+++|+++|.+++|| ++++|+.+++++|++. ++.+.|+++|++.|++ ++++++
T Consensus 1 m~~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~-~~~~~i~~~i~~~Gy~----~~~~~~ 67 (68)
T 3iwl_A 1 MPKHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESE-HSMDTLLATLKKTGKT----VSYLGL 67 (68)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEES-SCHHHHHHHHHTTCSC----EEEEEC
T ss_pred CceEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEec-CCHHHHHHHHHHcCCc----eEecCC
Confidence 45788999999999999999999999999 9999999999999997 8999999999988775 666653
No 2
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=99.46 E-value=4e-13 Score=94.71 Aligned_cols=65 Identities=23% Similarity=0.335 Sum_probs=58.9
Q ss_pred CCCCCceEEEEEEeccChhhHHHHHHHHhcCC-CceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 1 MGEKKVTTMVLKVDLQCSKCYKKVKKVLCKFP-QIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 1 Ma~k~vtt~vLKV~M~C~gCakKIkKAL~kI~-GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
|++ |.+++|+|+|+|.+|+++|+++|.+++ ||.++++|+.+++++|.+. ++.+.|+++|++.|++
T Consensus 1 m~~--m~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~Gy~ 66 (73)
T 1cc8_A 1 MAE--IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTT-LPYDFILEKIKKTGKE 66 (73)
T ss_dssp -CC--CEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEES-SCHHHHHHHHHTTSSC
T ss_pred CCC--ceEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEe-CCHHHHHHHHHHhCCC
Confidence 553 457899999999999999999999999 9999999999999999987 8999999999988775
No 3
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=99.37 E-value=2.5e-12 Score=90.35 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=58.0
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEee--cCHHHHHHHHHHhcCC
Q 025287 6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVC--CSPEKIRDKLCCKGEG 68 (255)
Q Consensus 6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~--vdpekLv~aL~kKggk 68 (255)
|++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|+.+. ++.+.|+++|++.|++
T Consensus 1 M~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 66 (74)
T 3dxs_X 1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFE 66 (74)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCE
T ss_pred CcEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCc
Confidence 56889999 999999999999999999999999999999999998742 6899999999998875
No 4
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=99.36 E-value=2.8e-12 Score=88.68 Aligned_cols=62 Identities=16% Similarity=0.353 Sum_probs=56.7
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287 7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk 68 (255)
++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|+++|++.|++
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYH 65 (69)
T ss_dssp EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCE
T ss_pred CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCc
Confidence 4689999 99999999999999999999999999999999999942 27899999999998775
No 5
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=99.29 E-value=8.2e-12 Score=88.55 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=56.9
Q ss_pred CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 5 KVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 5 ~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
.|.+++|+| +|+|.+|+.+|+++|.+ +||.++.+|+.+++++|+++ +.+.|+++|++.|+.
T Consensus 3 ~m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~--~~~~i~~~i~~~Gy~ 64 (73)
T 3fry_A 3 SVEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE--DVDKYIKAVEAAGYQ 64 (73)
T ss_dssp CCEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG--GHHHHHHHHHHTTCE
T ss_pred ccEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC--CHHHHHHHHHHcCCc
Confidence 378899999 99999999999999999 99999999999999999976 889999999998774
No 6
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.9e-11 Score=92.92 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=61.7
Q ss_pred ceEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCccceeEEeCCC
Q 025287 6 VTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAILEPE 79 (255)
Q Consensus 6 vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~IK~IEIVspe 79 (255)
+.+++|+|+|+|.+|+++|+++|.+++||.++.||+.+++++|.+. ++.+.|+++|++.|++ +.++...
T Consensus 18 ~~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~-~~~~~i~~~i~~~Gy~----~~~~~~~ 86 (98)
T 2crl_A 18 LCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTT-LPSQEVQALLEGTGRQ----AVLKGMG 86 (98)
T ss_dssp CEEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEES-SCHHHHHHHHHTTTSC----EEEEESC
T ss_pred ceEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEe-CCHHHHHHHHHHhCCc----eEEccCC
Confidence 5678899999999999999999999999999999999999999987 8999999999987764 6666543
No 7
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=99.26 E-value=9e-12 Score=82.81 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=55.7
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+. ++.+.|.++|.+.|++
T Consensus 2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~G~~ 62 (64)
T 2xmm_A 2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSA-LGEEQLRTAIASAGYE 62 (64)
T ss_dssp CEEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECS-SCHHHHHHHHHHTTCC
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEec-CCHHHHHHHHHHcCCC
Confidence 367999 99999999999999999999999999999999999976 8899999999988765
No 8
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=99.25 E-value=3.3e-11 Score=79.83 Aligned_cols=63 Identities=17% Similarity=0.299 Sum_probs=56.1
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
|..++|+| +|+|.+|+.+|+++|..++||.++.+|+.+++++|..+ .++.+.|.+.|.+.|+.
T Consensus 1 m~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 66 (69)
T 2qif_A 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYD 66 (69)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCE
T ss_pred CeEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 45678999 99999999999999999999999999999999999864 25778899999988765
No 9
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=99.22 E-value=5.7e-11 Score=82.22 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=55.8
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
|++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+....+.|+++|.+.|++
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~ 65 (73)
T 1mwy_A 2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYS 65 (73)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCE
T ss_pred CeEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCc
Confidence 67889999 9999999999999999999999999999999999987522357788889888775
No 10
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=99.21 E-value=1.2e-11 Score=84.37 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=54.3
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+. ++.+.|+++|.+.|++
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~Gy~ 61 (66)
T 2roe_A 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGT-ADPKALVQAVEEEGYK 61 (66)
T ss_dssp BCEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSC-CCHHHHHHHHHTTTCE
T ss_pred EEEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCC-CCHHHHHHHHHHcCCC
Confidence 46899 99999999999999999999999999999999999655 8899999999988764
No 11
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=99.20 E-value=9.2e-11 Score=79.81 Aligned_cols=63 Identities=13% Similarity=0.299 Sum_probs=56.8
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
|.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|+++|.+.|+.
T Consensus 4 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 69 (71)
T 2l3m_A 4 MEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYD 69 (71)
T ss_dssp EEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCE
T ss_pred cEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 67889999 99999999999999999999999999999999999864 25778899999987763
No 12
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=99.19 E-value=6.1e-11 Score=80.95 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=59.8
Q ss_pred CCCCCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 1 MGEKKVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 1 Ma~k~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
|+.. |.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.+.|.+.|+.
T Consensus 1 ~~~~-~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 70 (76)
T 1opz_A 1 MLSE-QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYH 70 (76)
T ss_dssp CCCC-CEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCE
T ss_pred CCcc-ceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCc
Confidence 6676 78899999 99999999999999999999999999999999999864 25778899999988764
No 13
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=99.19 E-value=1.1e-10 Score=78.93 Aligned_cols=62 Identities=16% Similarity=0.351 Sum_probs=54.8
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287 7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk 68 (255)
++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|+++|.+.|++
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~ 66 (71)
T 2xmw_A 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYH 66 (71)
T ss_dssp EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCE
T ss_pred cEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 4578999 99999999999999999999999999999999999864 25778899999988774
No 14
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=99.19 E-value=6.1e-11 Score=79.16 Aligned_cols=61 Identities=15% Similarity=0.317 Sum_probs=54.7
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk 68 (255)
+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.++|.+.|+.
T Consensus 2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~ 64 (66)
T 1yg0_A 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQE 64 (66)
T ss_dssp EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 467999 99999999999999999999999999999999999865 24678899999988875
No 15
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=99.17 E-value=1.3e-10 Score=79.09 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=56.7
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
+++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|++.|.+.|++
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 67 (72)
T 1osd_A 2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYP 67 (72)
T ss_dssp EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCC
T ss_pred ceEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35789999 99999999999999999999999999999999999875 25778899999998875
No 16
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=99.16 E-value=4.8e-11 Score=88.36 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=57.6
Q ss_pred CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 5 KVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 5 ~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
.+.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+. ++.+.|+++|.+.|+.
T Consensus 20 ~~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~-~~~~~i~~~i~~~Gy~ 83 (85)
T 2k2p_A 20 QGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGV-SDAAHIAEIITAAGYT 83 (85)
T ss_dssp --CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESC-CCHHHHHHHHHHTTCC
T ss_pred cccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEec-CCHHHHHHHHHHcCCC
Confidence 467789999 99999999999999999999999999999999999987 8999999999998775
No 17
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=99.14 E-value=1.5e-10 Score=83.25 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=59.6
Q ss_pred CCCCCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 1 MGEKKVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 1 Ma~k~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
||.....+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|+++|.+.|+.
T Consensus 3 ~~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 73 (84)
T 1q8l_A 3 MAQAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFP 73 (84)
T ss_dssp SSSSSCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCC
T ss_pred ccccCceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCc
Confidence 3444567789999 99999999999999999999999999999999999874 25778899999988775
No 18
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=99.14 E-value=1.7e-10 Score=78.49 Aligned_cols=61 Identities=18% Similarity=0.355 Sum_probs=55.2
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEee--cCHHHHHHHHHHhcCC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVC--CSPEKIRDKLCCKGEG 68 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~--vdpekLv~aL~kKggk 68 (255)
+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+. ++.+.|+++|.+.|+.
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 67 (72)
T 1aw0_A 4 ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFD 67 (72)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCE
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCC
Confidence 578999 999999999999999999999999999999999998752 5678899999988774
No 19
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=99.13 E-value=1.4e-10 Score=79.36 Aligned_cols=65 Identities=26% Similarity=0.339 Sum_probs=56.6
Q ss_pred CCCCCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEee--cCHHHHHHHHHHhcCC
Q 025287 1 MGEKKVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVC--CSPEKIRDKLCCKGEG 68 (255)
Q Consensus 1 Ma~k~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~--vdpekLv~aL~kKggk 68 (255)
|++. ++.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+. ++.+.|.++|.+.|+.
T Consensus 1 m~~~---~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 68 (75)
T 1yjr_A 1 MGDG---VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFE 68 (75)
T ss_dssp CCCC---CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCE
T ss_pred CCce---EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 5555 678999 999999999999999999999999999999999998651 4567888999988774
No 20
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=99.11 E-value=4.5e-10 Score=77.55 Aligned_cols=62 Identities=11% Similarity=0.262 Sum_probs=55.8
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|.+.|+.
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 66 (75)
T 3cjk_B 2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFD 66 (75)
T ss_dssp EEEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCC
T ss_pred cEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCc
Confidence 4678999 99999999999999999999999999999999999874 25778899999998775
No 21
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=99.10 E-value=3.6e-10 Score=75.75 Aligned_cols=60 Identities=12% Similarity=0.259 Sum_probs=54.0
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.+.|.+.|++
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 64 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQ 64 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSC
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 46899 99999999999999999999999999999999999875 25778899999988775
No 22
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=99.10 E-value=2.8e-10 Score=79.60 Aligned_cols=64 Identities=13% Similarity=0.266 Sum_probs=57.7
Q ss_pred CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 5 KVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 5 ~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
++.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|+++|.+.|+.
T Consensus 6 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 72 (79)
T 1kvi_A 6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFD 72 (79)
T ss_dssp TCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCC
T ss_pred CcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCc
Confidence 467889999 99999999999999999999999999999999999864 25678899999998875
No 23
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=99.10 E-value=1.1e-10 Score=79.89 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=52.2
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
++|+| +|+|.+|+.+|+++|.++ ||.++.+|+.+++++|.++ .+ +.|+++|++.|+.
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~-~~-~~i~~~i~~~Gy~ 60 (67)
T 2kyz_A 3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETE-NL-DSVLKKLEEIDYP 60 (67)
T ss_dssp EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECS-CH-HHHHHHHHTTTCC
T ss_pred EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEEC-CH-HHHHHHHHHcCCc
Confidence 68999 999999999999999999 9999999999999999876 44 7899999988775
No 24
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=99.09 E-value=1.7e-10 Score=80.49 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=57.4
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
|++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.++|.+.|+.
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 67 (77)
T 1y3j_A 2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFG 67 (77)
T ss_dssp CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSC
T ss_pred CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCc
Confidence 77899999 99999999999999999999999999999999999864 25678899999998875
No 25
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=99.09 E-value=1.9e-10 Score=78.08 Aligned_cols=60 Identities=25% Similarity=0.463 Sum_probs=53.6
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk 68 (255)
++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|+++|.+.|+.
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~ 63 (69)
T 2kt2_A 2 THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYK 63 (69)
T ss_dssp CCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSE
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCc
Confidence 46889 99999999999999999999999999999999999864 25778899999988764
No 26
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=99.08 E-value=2e-10 Score=76.89 Aligned_cols=63 Identities=14% Similarity=0.339 Sum_probs=55.6
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
+.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|.+.|+.
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 67 (71)
T 2ldi_A 2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYT 67 (71)
T ss_dssp CEEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCE
T ss_pred cEEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 45678999 99999999999999999999999999999999999864 25678899999987764
No 27
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=99.07 E-value=5e-10 Score=76.09 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=55.1
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk 68 (255)
+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|.+.|++
T Consensus 3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~ 65 (72)
T 1fvq_A 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFD 65 (72)
T ss_dssp EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCC
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCc
Confidence 478999 99999999999999999999999999999999999864 25788899999998875
No 28
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=99.04 E-value=8.8e-10 Score=81.25 Aligned_cols=59 Identities=12% Similarity=0.356 Sum_probs=53.6
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHh
Q 025287 7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCK 65 (255)
Q Consensus 7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kK 65 (255)
++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|+++|.+.
T Consensus 3 ~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999 99999999999999999999999999999999999864 25778899999988
No 29
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=99.01 E-value=6.6e-10 Score=77.15 Aligned_cols=63 Identities=14% Similarity=0.270 Sum_probs=56.1
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
|.++.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|.+.|+.
T Consensus 2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 67 (80)
T 1jww_A 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYK 67 (80)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSE
T ss_pred ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCe
Confidence 55788999 99999999999999999999999999999999999864 25778899999988764
No 30
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=99.00 E-value=1.2e-09 Score=83.96 Aligned_cols=64 Identities=16% Similarity=0.309 Sum_probs=57.9
Q ss_pred CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEee--cCHHHHHHHHHHhcCC
Q 025287 5 KVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVC--CSPEKIRDKLCCKGEG 68 (255)
Q Consensus 5 ~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~--vdpekLv~aL~kKggk 68 (255)
.|++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+. ++.+.|+++|.+.|+.
T Consensus 6 ~~~~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~Gy~ 72 (111)
T 2ofg_X 6 PLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYT 72 (111)
T ss_dssp CCEEEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTTTCC
T ss_pred cceEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHcCCe
Confidence 577889999 999999999999999999999999999999999998752 5678899999988875
No 31
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=98.96 E-value=1.7e-09 Score=74.52 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=49.4
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+. .+ .+.|.+.|+.
T Consensus 4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~-~~----~~~i~~~Gy~ 60 (71)
T 2aj0_A 4 KTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGE-AS----IQQVEQAGAF 60 (71)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEES-CC----HHHHHHHHTT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEec-Cc----HHHHHHhCCC
Confidence 578999 99999999999999999999999999999999999976 33 4567777765
No 32
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=98.96 E-value=3.1e-09 Score=78.24 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=57.8
Q ss_pred CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEee--cCHHHHHHHHHHhcCC
Q 025287 5 KVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVC--CSPEKIRDKLCCKGEG 68 (255)
Q Consensus 5 ~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~--vdpekLv~aL~kKggk 68 (255)
.|.+++|+| +|+|.+|+.+|+++|..++||.++.+|+.+++++|..+. ++.+.|+++|...|+.
T Consensus 14 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 80 (95)
T 2kkh_A 14 KLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLE 80 (95)
T ss_dssp CSEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCC
T ss_pred ceEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCc
Confidence 577889999 999999999999999999999999999999999998752 4678899999988875
No 33
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=98.92 E-value=3.2e-09 Score=82.24 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=56.1
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|+++|.+.|++
T Consensus 80 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 144 (149)
T 2ew9_A 80 GNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFH 144 (149)
T ss_dssp SEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCE
T ss_pred ceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCc
Confidence 4678999 99999999999999999999999999999999999864 25788999999998874
No 34
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.87 E-value=7.2e-09 Score=90.77 Aligned_cols=61 Identities=20% Similarity=0.410 Sum_probs=56.9
Q ss_pred eEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 7 TTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 7 tt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
.+++|+|.|+|.+|+.+|+++|.+++||.++++|+.+++++|.+. ++.++|+++|++.|++
T Consensus 6 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~-~~~~~I~~aI~~~Gy~ 66 (222)
T 1qup_A 6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGKD 66 (222)
T ss_dssp EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEES-SCHHHHHHHHHHTTCC
T ss_pred eEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEecc-CCHHHHHHHHHHcCCc
Confidence 457889999999999999999999999999999999999999987 8999999999998775
No 35
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=98.87 E-value=5.8e-09 Score=80.75 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=56.2
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
|++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|.+.|++
T Consensus 3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 68 (149)
T 2ew9_A 3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFE 68 (149)
T ss_dssp CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCE
T ss_pred cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCc
Confidence 45889999 99999999999999999999999999999999999864 25678899999988764
No 36
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=98.85 E-value=4.7e-09 Score=81.90 Aligned_cols=62 Identities=15% Similarity=0.275 Sum_probs=56.4
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
..+.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|+++|.+.|+.
T Consensus 74 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 138 (151)
T 1p6t_A 74 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYK 138 (151)
T ss_dssp EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCC
T ss_pred cccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 4678999 99999999999999999999999999999999999864 26789999999998875
No 37
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.78 E-value=1.3e-08 Score=90.93 Aligned_cols=62 Identities=19% Similarity=0.404 Sum_probs=57.3
Q ss_pred ceEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 6 VTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 6 vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
..+++|+|.|+|.+|+.+|+++|.+++||.++++|+.+++++|.+. ++.+.|+++|++.|++
T Consensus 6 ~~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~-~~~~~I~~aIe~~Gy~ 67 (249)
T 1jk9_B 6 TYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGKD 67 (249)
T ss_dssp CEEEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEES-SCHHHHHHHHHTTTCC
T ss_pred ceeEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecC-CCHHHHHHHHHHhCCC
Confidence 3457899999999999999999999999999999999999999987 8999999999988775
No 38
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=98.76 E-value=2.5e-08 Score=82.88 Aligned_cols=62 Identities=16% Similarity=0.352 Sum_probs=56.3
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
.+++|+| +|+|.+|+.+|+++|.+++||.++.||+.+++++|..+ .++.+.|+++|.+.|+.
T Consensus 122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 186 (202)
T 2rop_A 122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFE 186 (202)
T ss_dssp EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSC
T ss_pred eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCc
Confidence 4678999 99999999999999999999999999999999999864 25788999999998875
No 39
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=98.63 E-value=4.7e-08 Score=81.23 Aligned_cols=61 Identities=18% Similarity=0.418 Sum_probs=53.1
Q ss_pred CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHh
Q 025287 5 KVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCK 65 (255)
Q Consensus 5 ~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kK 65 (255)
.|++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|...
T Consensus 18 ~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 81 (202)
T 2rop_A 18 HVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEAL 81 (202)
T ss_dssp --CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTS
T ss_pred ccEEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 467789999 99999999999999999999999999999999999864 25677888888876
No 40
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=98.54 E-value=3e-07 Score=71.59 Aligned_cols=63 Identities=21% Similarity=0.360 Sum_probs=55.1
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
++...|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.++|.+.|++
T Consensus 5 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 70 (151)
T 1p6t_A 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYH 70 (151)
T ss_dssp CEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCE
T ss_pred ceEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCc
Confidence 56678999 99999999999999999999999999999999999754 24678888889887764
No 41
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=98.23 E-value=1.9e-06 Score=86.18 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=56.0
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
+++|+| +|+|.+|+.+|+++|.+++||+++++|+.+++++|+.+ .++.++|+++|++.|++
T Consensus 3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~ 66 (723)
T 3j09_A 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYG 66 (723)
T ss_dssp CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCE
T ss_pred eEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCc
Confidence 468999 99999999999999999999999999999999999864 26889999999998875
No 42
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=95.86 E-value=0.017 Score=45.78 Aligned_cols=73 Identities=19% Similarity=0.122 Sum_probs=54.2
Q ss_pred CCCCCceEEEEEEeccChhhHHHHHHHHhcCCCceeEEE-----EcCC--CeEEEEEeecCHHHHHHHHHHhcCCcccee
Q 025287 1 MGEKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIF-----DEKT--NTVRIKVVCCSPEKIRDKLCCKGEGSIKSI 73 (255)
Q Consensus 1 Ma~k~vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~V-----Dlk~--~kVTVeG~~vdpekLv~aL~kKggk~IK~I 73 (255)
|+.++++.++|-|.--=+==.-.+-++|++++||..|.+ |..+ =+|||+|..+|-+.|.++|++.|+ +|-+|
T Consensus 1 ~~~~~iRRlVLDVlKPh~P~ivdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~Gg-vIHSI 79 (100)
T 3bpd_A 1 MSLKGLRRLVLDVLKPHEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGG-VIHSV 79 (100)
T ss_dssp --CCSEEEEEEEEEEESCSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTC-EEEEE
T ss_pred CCcccceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC-eEEee
Confidence 778888999999832234456678899999999988874 3332 346667877999999999998765 78888
Q ss_pred E
Q 025287 74 A 74 (255)
Q Consensus 74 E 74 (255)
.
T Consensus 80 D 80 (100)
T 3bpd_A 80 D 80 (100)
T ss_dssp E
T ss_pred e
Confidence 7
No 43
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=94.46 E-value=0.081 Score=41.74 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=52.6
Q ss_pred CCCCCceEEEEEEeccChhhHHHHHHHHhcCCCceeEEE-----EcCCC--eEEEEEeecCHHHHHHHHHHhcCCcccee
Q 025287 1 MGEKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIF-----DEKTN--TVRIKVVCCSPEKIRDKLCCKGEGSIKSI 73 (255)
Q Consensus 1 Ma~k~vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~V-----Dlk~~--kVTVeG~~vdpekLv~aL~kKggk~IK~I 73 (255)
|-.++++.++|-|---=+==.-.+-++|+++.||..|.+ |..+. +|||+|..+|-+.|.++|.+.|+ +|.+|
T Consensus 1 ~~~~~irRlVLDVlKPh~p~i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg-~IHSI 79 (97)
T 2raq_A 1 MVAKGLIRIVLDILKPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGG-SIHSV 79 (97)
T ss_dssp --CCSEEEEEEEEECCSCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTC-EEEEE
T ss_pred CcccCceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC-eEEee
Confidence 455677888888832233345678899999999888774 44433 45667866999999999998766 78888
Q ss_pred E
Q 025287 74 A 74 (255)
Q Consensus 74 E 74 (255)
.
T Consensus 80 D 80 (97)
T 2raq_A 80 D 80 (97)
T ss_dssp E
T ss_pred e
Confidence 7
No 44
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=92.06 E-value=0.3 Score=38.43 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=48.8
Q ss_pred CceEEEEEE--eccChhhHHHHHHHHhcCCCceeEEE-----EcCC--CeEEEEEeecCHHHHHHHHHHhcCCccceeE
Q 025287 5 KVTTMVLKV--DLQCSKCYKKVKKVLCKFPQIQDQIF-----DEKT--NTVRIKVVCCSPEKIRDKLCCKGEGSIKSIA 74 (255)
Q Consensus 5 ~vtt~vLKV--~M~C~gCakKIkKAL~kI~GV~sV~V-----Dlk~--~kVTVeG~~vdpekLv~aL~kKggk~IK~IE 74 (255)
+++.++|-| .+|= ==.-.+-++|+++.||..|.+ |..+ =+|||+|..+|-+.|.++|++.|+ +|.+|.
T Consensus 3 ~irRlVLDVlKP~h~-P~ivd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg-~IHSID 79 (96)
T 2x3d_A 3 AIRRLVLDVLKPIRG-TSIVDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGC-AIHSID 79 (96)
T ss_dssp CEEEEEEEEEEESSS-SCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTC-EEEEEE
T ss_pred ceEEEEEEcccCCCC-CCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC-eEEeee
Confidence 355666666 3232 234567889999999988874 3332 345667877999999999998766 788887
No 45
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=84.65 E-value=11 Score=28.64 Aligned_cols=59 Identities=10% Similarity=0.167 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCc--cceeEEeCC
Q 025287 19 KCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGS--IKSIAILEP 78 (255)
Q Consensus 19 gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~--IK~IEIVsp 78 (255)
+=...|..+|.+|+||+-..+|..++++.|+-..-+.+.|.+.| ++.++. |.++.++.-
T Consensus 17 ~~~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i-~~I~~i~GVlst~lvy~ 77 (95)
T 2jsx_A 17 ERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTI-ESVRNVEGVLAVSLVYH 77 (95)
T ss_dssp TSHHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHH-HHHTTSTTEEEEEESSC
T ss_pred CCHHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHH-HHHhcCCCccEEeEEEE
Confidence 33789999999999995445576678888876545777888877 445543 666666654
No 46
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.51 E-value=7 Score=31.12 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=42.7
Q ss_pred EEEEE-eccCh-hhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecC-HHHHHHHHHHh
Q 025287 9 MVLKV-DLQCS-KCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCS-PEKIRDKLCCK 65 (255)
Q Consensus 9 ~vLKV-~M~C~-gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vd-pekLv~aL~kK 65 (255)
++|+| ++.-+ -....|+.+++.+..|..|.|.....+-.|+-. + .+...++|++.
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~--~~~~~A~~av~~l 76 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFK--EKAKEALGKAKDA 76 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEES--SCHHHHHHHHHHT
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEEC--CChHHHHHHHHHh
Confidence 56778 77777 789999999999999999999888777777743 4 45666666654
No 47
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=76.69 E-value=3.5 Score=31.13 Aligned_cols=35 Identities=14% Similarity=0.407 Sum_probs=28.2
Q ss_pred EEEEEEeccChhh------HHHHHHHHhcCCCceeEEEEcC
Q 025287 8 TMVLKVDLQCSKC------YKKVKKVLCKFPQIQDQIFDEK 42 (255)
Q Consensus 8 t~vLKV~M~C~gC------akKIkKAL~kI~GV~sV~VDlk 42 (255)
.+.|.+.|++.+| ...|+.+|..++||.+|+|++.
T Consensus 42 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~ 82 (103)
T 3cq1_A 42 RAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT 82 (103)
T ss_dssp EEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEe
Confidence 4567777788777 4679999999999999998854
No 48
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=76.09 E-value=6.7 Score=30.05 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHH
Q 025287 23 KVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLC 63 (255)
Q Consensus 23 KIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~ 63 (255)
+.-+.|.+.-|+++++++.++++|+|.|. +.+.+.+++.
T Consensus 35 k~Ik~I~e~tGv~~IdI~eddG~V~I~g~--~~ea~~~A~~ 73 (91)
T 2cpq_A 35 SNIQQARKVPGVTAIELDEDTGTFRIYGE--SADAVKKARG 73 (91)
T ss_dssp HHHHHHHTSTTEEEEEEETTTTEEEEEES--SHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEEcCCCEEEEEEC--CHHHHHHHHH
Confidence 45566677789988999977899999984 5666655544
No 49
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=73.52 E-value=3.9 Score=31.36 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=28.0
Q ss_pred EEEEEEeccChhh------HHHHHHHH-hcCCCceeEEEEcC
Q 025287 8 TMVLKVDLQCSKC------YKKVKKVL-CKFPQIQDQIFDEK 42 (255)
Q Consensus 8 t~vLKV~M~C~gC------akKIkKAL-~kI~GV~sV~VDlk 42 (255)
.+.|.+-|+..+| ...|+.+| ..++||.+|+|++.
T Consensus 45 ~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~ 86 (108)
T 3lno_A 45 NAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVV 86 (108)
T ss_dssp CEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred eEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 3566777777777 67899999 99999999988754
No 50
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=71.79 E-value=5.3 Score=30.04 Aligned_cols=35 Identities=6% Similarity=0.185 Sum_probs=27.0
Q ss_pred EEEEEEeccChhhH------HHHHHHHhcCCCceeEEEEcC
Q 025287 8 TMVLKVDLQCSKCY------KKVKKVLCKFPQIQDQIFDEK 42 (255)
Q Consensus 8 t~vLKV~M~C~gCa------kKIkKAL~kI~GV~sV~VDlk 42 (255)
.+.|.+.|+..+|- ..|+.+|..++||.+|+|++.
T Consensus 43 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 43 NVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT 83 (103)
T ss_dssp EEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 45666777776663 568999999999999988843
No 51
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON DO cell membrane, membrane, transmembrane, membrane protein; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=63.80 E-value=4.1 Score=32.48 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=20.3
Q ss_pred HHHHhcCCCceeEEEEcCCCeEEEEEeecC
Q 025287 25 KKVLCKFPQIQDQIFDEKTNTVRIKVVCCS 54 (255)
Q Consensus 25 kKAL~kI~GV~sV~VDlk~~kVTVeG~~vd 54 (255)
..+|..+..+..++|+.+++.||++|. ++
T Consensus 67 ~~aL~~~~~l~~i~V~V~~g~VtLsG~-v~ 95 (132)
T 2kgs_A 67 EPVFTASVPIPDFGLKVERDTVTLTGT-AP 95 (132)
T ss_dssp HHHHHHHTTCTTCEEEEEETEEEEECE-ES
T ss_pred HHHHHhcCcCCceEEEEECCEEEEEEE-EC
Confidence 445555444457778888999999997 44
No 52
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=58.44 E-value=23 Score=25.61 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=37.0
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEee-cCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVC-CSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~-vdpekLv~aL~kKggk 68 (255)
.+|-+ ++.|..=.-+++++|.++. ..+.+.|..+. ...+.|.+.++..|++
T Consensus 11 ~~lD~rGl~CP~Pvl~~kkal~~l~---------~G~~l~V~~dd~~a~~di~~~~~~~G~~ 63 (82)
T 3lvj_C 11 HTLDALGLRCPEPVMMVRKTVRNMQ---------PGETLLIIADDPATTRDIPGFCTFMEHE 63 (82)
T ss_dssp EEEECTTCCTTHHHHHHHHHHHTSC---------TTCEEEEEECCTTHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCCCHHHHHHHHHHHhCC---------CCCEEEEEECCccHHHHHHHHHHHCCCE
Confidence 56677 9999999999999999985 23445555431 3456788888887765
No 53
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=57.20 E-value=47 Score=23.27 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=38.7
Q ss_pred EEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 9 MVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 9 ~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
+.+.|.+.=+.+ ..+.++|+++++|..+-.-..+.-+.+....-|.+.|.+.|.++..
T Consensus 4 A~v~v~~~~~~~-~~~~~~l~~~peV~e~~~vtG~~D~ll~v~~~d~~~l~~~i~~~l~ 61 (83)
T 2cvi_A 4 AFILMVTAAGKE-REVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIR 61 (83)
T ss_dssp EEEEEEECTTCH-HHHHHHHHTSTTEEEEEECBSSCSEEEEEEESSHHHHHHHHHTTGG
T ss_pred EEEEEEEcCCCH-HHHHHHHhCCCCeeEEEEEcccCCEEEEEEECCHHHHHHHHHHHhc
Confidence 344444443443 7899999999999998875555555555543578888777764433
No 54
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=57.00 E-value=34 Score=25.95 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=38.2
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEee-cCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVC-CSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~-vdpekLv~aL~kKggk 68 (255)
.+|-+ ++.|-.=.-+++++|.+|. .++.+.|..+. ...+.|.+.++..|++
T Consensus 27 ~~LD~rGl~CP~Pvl~tkkaL~~l~---------~Ge~L~Vl~dd~~a~~dI~~~~~~~G~~ 79 (98)
T 1jdq_A 27 KTLDVRGEVCPVPDVETKRALQNMK---------PGEILEVWIDYPMSKERIPETVKKLGHE 79 (98)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHTCC---------TTCEEEEEESSCTHHHHHHHHHHHSSCC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhCC---------CCCEEEEEECCccHHHHHHHHHHHCCCE
Confidence 45777 9999999999999999985 33455555542 3457888888887775
No 55
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.65 E-value=47 Score=22.52 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=45.4
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHh
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kK 65 (255)
..+|.| +|.-+-....|++.++....|.++.+....+-.-|+-. +.+...++|...
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~--~~~~A~~a~~~l 68 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFA--TRQAAEVAAEKS 68 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEES--SHHHHHHHHHTT
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEEC--CHHHHHHHHHHh
Confidence 346777 88888889999999999999999999887788888764 667777777754
No 56
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=51.34 E-value=52 Score=24.41 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=43.5
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC-----CeEEEEEeecCHHHHHHHHHHhcC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT-----NTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~-----~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
.+|.| +|.=+--...|+..++.+..|.+|.+-.+. +-.-|+.. +.+...++|...-+
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~--~~~~A~~Ai~~l~g 70 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFE--NPADAKNAAKDMNG 70 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECS--SHHHHHHHHHHCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEEC--CHHHHHHHHHHhCC
Confidence 46777 888888899999999999999999987654 56666643 66777777775433
No 57
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=50.10 E-value=64 Score=22.73 Aligned_cols=58 Identities=10% Similarity=-0.018 Sum_probs=45.8
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
.+|.| +|.-+--...|+..++.+..|.++.+....+-.-|+.. +.+...++|...-+.
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~--~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYD--THEQAAVCIVALANF 86 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECS--SHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEEC--CHHHHHHHHHHhCCC
Confidence 46778 88877788999999999999999999877888888753 566677777654444
No 58
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.93 E-value=72 Score=22.94 Aligned_cols=58 Identities=7% Similarity=0.074 Sum_probs=46.1
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
..+|.| +|.-+--...|+..+..+..|.+|.+....+-.-|+.. +.+...++|...-+
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~--~~~~a~~A~~~l~g 83 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFS--THESAAHAIVSVNG 83 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEES--SHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEC--CHHHHHHHHHHcCC
Confidence 346777 88888888999999999999999999888888888864 66667777765433
No 59
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=47.15 E-value=23 Score=25.24 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=32.6
Q ss_pred EEEEEEeccChhhH-----HHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 8 TMVLKVDLQCSKCY-----KKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 8 t~vLKV~M~C~gCa-----kKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
.++|-.--.|..|. +++++.|... ||.-..+|+..+ ..+++.|++..|
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~-~i~~~~~di~~~-----------~~~~~~l~~~~g 55 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGK-RIQYQLVDISQD-----------NALRDEMRTLAG 55 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHT-TCCCEEEETTSC-----------HHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHC-CCceEEEECCCC-----------HHHHHHHHHHhC
Confidence 45566677899997 8888888875 676666664432 246666776655
No 60
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.15 E-value=61 Score=22.82 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=42.8
Q ss_pred EEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHh
Q 025287 10 VLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 10 vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kK 65 (255)
+|.| +|.=.--...|+..++.+..|.++.+....+-.-|+.. +.+...++|...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~--~~~~a~~a~~~l 71 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLE--TRTLAEIAKVEL 71 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECS--SSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEEC--CHHHHHHHHHHh
Confidence 5677 88777788999999999999999999988888888853 556666666553
No 61
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=45.73 E-value=66 Score=21.59 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=41.4
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC--CC----eEEEEEeecCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK--TN----TVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk--~~----kVTVeG~~vdpekLv~aL~kKggk 68 (255)
++|.| +|.=+--...|+..++.+..|.++.+-.. ++ -.-|+. .+.+...++|...-+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f--~~~~~a~~a~~~l~g~ 66 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSF--TSQDDAQNAMDSMQGQ 66 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEE--SCHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEE--CCHHHHHHHHHHhcCC
Confidence 56777 88888888999999999999999988544 22 334443 3667777777754443
No 62
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=45.50 E-value=83 Score=22.69 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=46.1
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCcc
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSI 70 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~I 70 (255)
..|.| +|.=+--...|+..+..+-.|.++.+-.+ +..-|+.. +.+...++|...-+..|
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~--~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFV--RKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEES--SHHHHHHHHHHSSSEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEEC--CHHHHHHHHHHHCcCCc
Confidence 56777 88877789999999999999999999766 77777753 67888888886544434
No 63
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.81 E-value=80 Score=22.30 Aligned_cols=58 Identities=9% Similarity=-0.032 Sum_probs=43.7
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC----CCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK----TNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk----~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
..+|.| +|.-+--...|+..++.+..|.+|.+-.+ .+..-|+.. +.+...++|...-+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~--~~~~a~~A~~~l~g 77 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE--NSADADRAREKLHG 77 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEES--CHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEEC--CHHHHHHHHHHhCC
Confidence 356778 88888889999999999999999998765 445666643 66777777765333
No 64
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=41.37 E-value=1.1e+02 Score=22.88 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=47.9
Q ss_pred CceEEEEEE--eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEE--EeecCHHHHHHHHHHhcC--CccceeEEe
Q 025287 5 KVTTMVLKV--DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIK--VVCCSPEKIRDKLCCKGE--GSIKSIAIL 76 (255)
Q Consensus 5 ~vtt~vLKV--~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVe--G~~vdpekLv~aL~kKgg--k~IK~IEIV 76 (255)
.|..+.|.| ..+=-|=..-+.+.-.+| |++-..-|+.+++|.|. |..-+.+.++++|++.+- -.|.+|++-
T Consensus 6 ~m~~~~i~V~G~VQGVGFR~~v~~~A~~l-gL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~~~~p~~a~V~~v~~~ 82 (99)
T 2vh7_A 6 TLISVDYEIFGKVQGVFFRKHTQAEGKKL-GLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRGSPKSHIDKANFN 82 (99)
T ss_dssp CEEEEEEEEEEECSSSCHHHHHHHHHHHT-TCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHTCSTTCEEEEEEEE
T ss_pred ceEEEEEEEEEeeCCcChHHHHHHHHHHc-CCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEEEE
Confidence 466677777 555666666776666665 78888889999977665 542345778888876543 236666654
No 65
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=41.02 E-value=44 Score=25.47 Aligned_cols=36 Identities=6% Similarity=0.095 Sum_probs=27.1
Q ss_pred CceEEEEEEeccChhh--HHHHHHHHhcCCCceeEEEE
Q 025287 5 KVTTMVLKVDLQCSKC--YKKVKKVLCKFPQIQDQIFD 40 (255)
Q Consensus 5 ~vtt~vLKV~M~C~gC--akKIkKAL~kI~GV~sV~VD 40 (255)
|+..+.+.+-|--+.. ...|+.+|+.++||++++|.
T Consensus 49 Glk~L~i~~vveD~~~~~tD~lee~i~~~e~VqSvdV~ 86 (91)
T 2yy3_A 49 GLVALKFYVLGRDEEGYSFDEVAEKFEEVENVESAEVE 86 (91)
T ss_dssp SCEEEEEEEEECSSTTCCHHHHHHHHHHSTTEEEEEEE
T ss_pred ceeeEEEEEEEECCCccccHHHHHHHhcCCCceEEEEE
Confidence 4455555555555655 89999999999999999875
No 66
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=40.59 E-value=1.4e+02 Score=23.73 Aligned_cols=71 Identities=18% Similarity=0.127 Sum_probs=47.2
Q ss_pred CceEEEEEE--eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEE--EeecCHHHHHHHHHHhcC--CccceeEEeC
Q 025287 5 KVTTMVLKV--DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIK--VVCCSPEKIRDKLCCKGE--GSIKSIAILE 77 (255)
Q Consensus 5 ~vtt~vLKV--~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVe--G~~vdpekLv~aL~kKgg--k~IK~IEIVs 77 (255)
.+.++.|+| ...=-|=..-+.+.-.+| |++-..-|+.+++|.|. |..-+.+.++++|++ +- -.|.+|++-.
T Consensus 32 di~t~~frV~G~VQGVGFR~~v~~~A~~l-gL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~~-gPp~A~V~~v~~~~ 108 (121)
T 2lxf_A 32 DVTTLCYRVTGKVQGVFFRKYTKKEADAL-SLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLHK-GSPKSVVKKVSIHA 108 (121)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHHHH-TCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHH-CCTTCCEEEEEEEC
T ss_pred CEEEEEEEEEEeeCCcCchHHHHHHHHHc-CCEEEEEECCCCCEEEEEEECHHHHHHHHHHHHh-CCCCCEEEEEEEEE
Confidence 367788888 444555555565555555 78888889999977775 543456778888864 32 2367777654
No 67
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.19 E-value=93 Score=21.74 Aligned_cols=60 Identities=12% Similarity=0.005 Sum_probs=44.4
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCcc
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSI 70 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~I 70 (255)
.+|.| +|.=+--...|++.++.+..|.++.+....+..-|+.. +.+...++|...-+..|
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~--~~~~A~~A~~~l~g~~~ 78 (97)
T 1why_A 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYE--SLDAAQAACAKMRGFPL 78 (97)
T ss_dssp SCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEES--SHHHHHHHHHHHTTCBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEEC--CHHHHHHHHHHHCCCEe
Confidence 35667 77777778999999999999999998876677777753 56666677765443333
No 68
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=39.58 E-value=1e+02 Score=22.13 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=42.1
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC--C----eEEEEEeecCHHHHHHHHHHhc
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT--N----TVRIKVVCCSPEKIRDKLCCKG 66 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~--~----kVTVeG~~vdpekLv~aL~kKg 66 (255)
..+|.| +|.-.--...|+..+..+..|.+|.+-.+. + ..-|+. .+.+....+|...-
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f--~~~~~a~~A~~~l~ 78 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF--FNKWDAENAIQQMG 78 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEE--SSHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEE--CCHHHHHHHHHHhC
Confidence 357788 898888899999999999999999986542 2 344443 36677777777543
No 69
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.02 E-value=1e+02 Score=21.97 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=42.5
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCC---eEEEEEeecCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTN---TVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~---kVTVeG~~vdpekLv~aL~kKggk 68 (255)
.+|.| +|.-+--...|+..+..+..|.++.+....+ ..-|+.. +.+...++|...-+.
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~--~~~~A~~A~~~l~g~ 84 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFE--DPRDAEDAVYGRDGY 84 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEES--CHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEC--CHHHHHHHHHHcCCC
Confidence 46777 8888888899999999999999999865433 5566643 567777777654443
No 70
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=38.81 E-value=1e+02 Score=22.59 Aligned_cols=58 Identities=5% Similarity=0.084 Sum_probs=43.0
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC------CCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK------TNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk------~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
..+|.| +|.-.--...|+..+..+..|.+|.+-.. .+..-|+.. +.+....+|...-+
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~--~~~~a~~A~~~l~g 86 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE--TYKEAQAAMEGLNG 86 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEES--SHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEEC--CHHHHHHHHHHhCC
Confidence 457888 88888889999999999999999988544 445666643 56667777765433
No 71
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.64 E-value=1.1e+02 Score=22.30 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=44.5
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHh
Q 025287 7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kK 65 (255)
...+|.| +|.-+-=...|+..+..+..|.++.+....+..-|+.. +.+....+|...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~--~~~~A~~Ai~~l 66 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFL--EPLEARKAFRHL 66 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEES--CHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeC--CHHHHHHHHHHh
Confidence 3467888 89888888999999999999999998767777777753 556666666654
No 72
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=38.55 E-value=42 Score=25.46 Aligned_cols=42 Identities=10% Similarity=0.219 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHH
Q 025287 22 KKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCC 64 (255)
Q Consensus 22 kKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~k 64 (255)
..|++...+..+| .|.|.-.++.|+|+|..-+.++.+..|..
T Consensus 47 ~~Ik~i~~~~~~v-~I~fp~~~~~ItI~G~~~~V~~a~~~I~~ 88 (102)
T 2ctf_A 47 QNLAKITQQMPKV-HIEFTEGEDKITLEGPTEDVSVAQEQIEG 88 (102)
T ss_dssp CHHHHHHHHCSSS-EEEECSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred ccHHHHHHHcCCc-EEEeCCCCCEEEEECCHHHHHHHHHHHHH
Confidence 3566666666665 56666578999999973344444444443
No 73
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=38.06 E-value=44 Score=23.23 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=42.1
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
.+|.| +|.=+--...|+..+..+ +|.++.++...+-.-|+-. +.+...++|...-+
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~--~~~~a~~Ai~~l~g 62 (88)
T 1wg1_A 6 SGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLL--NGEQAQNAIQMFHQ 62 (88)
T ss_dssp CCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCS--CHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEEC--CHHHHHHHHHHhCC
Confidence 35667 777667789999999999 9999999866777777743 56677777775433
No 74
>3pro_C Alpha-lytic protease; Pro region, foldase, protein folding, serine protease, hydro hydrolase inhibitor complex; HET: AES; 1.80A {Lysobacter enzymogenes} SCOP: d.52.1.1 d.52.1.1 PDB: 2pro_A* 4pro_C
Probab=36.81 E-value=92 Score=26.02 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=27.6
Q ss_pred CCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCccceeEEe
Q 025287 32 PQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAIL 76 (255)
Q Consensus 32 ~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~IK~IEIV 76 (255)
.||.+.-||..+|+|+|+.+.-..... .+|.++.|-.--.|+|.
T Consensus 114 ~~v~~W~VD~~tN~VVV~a~~~~~~aa-~~f~~~AG~~~~av~V~ 157 (166)
T 3pro_C 114 DGVQSWYVDPRSNAVVVKVDDGATDAG-VDFVALSGADSAQVRIE 157 (166)
T ss_dssp TTEEEEEEEGGGTEEEEEEETTCHHHH-HHHHHHHTCCTTTEEEE
T ss_pred CCCceEEEeCCCCeEEEEeCCCChHHH-HHHHHHhCCCCCceEEE
Confidence 468899999999999999762234444 44444444222234544
No 75
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=36.77 E-value=58 Score=24.64 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=36.9
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk 68 (255)
.+|-+ |+.|..=.-+++++|.+|. .++.+.|..+ ....+.|.+.++..|++
T Consensus 28 ~~LD~rGl~CP~PvlktkkaL~~l~---------~Ge~L~Vl~dd~~a~~dIp~~~~~~G~~ 80 (97)
T 1je3_A 28 YRLDMVGEPCPYPAVATLEAMPQLK---------KGEILEVVSDCPQSINNIPLDARNHGYT 80 (97)
T ss_dssp EEECSBCCSSSSSTHHHHHHTTTCC---------SSCEEEEEEBCSSSSCHHHHHHHHHTCS
T ss_pred eEEeCCCCCCCHHHHHHHHHHHcCC---------CCCEEEEEECCcchHHHHHHHHHHCCCE
Confidence 45555 9999999999999999985 2334455443 13457788888888776
No 76
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=36.63 E-value=1e+02 Score=21.05 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 21 YKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 21 akKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
...+.++|.++++|..+-.-..+.-+.+....-|.+.|.+.|.....
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYDIVVKVEADSMDKLKDFVTNTIR 61 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCSEEEEEECSSHHHHHHHHHHTGG
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCCEEEEEEECCHHHHHHHHHHHhc
Confidence 47899999999999998876655555665543577778777764443
No 77
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=36.15 E-value=1.1e+02 Score=21.34 Aligned_cols=57 Identities=5% Similarity=-0.029 Sum_probs=41.5
Q ss_pred EEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC------CCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 10 VLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK------TNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 10 vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk------~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
+|.| +|.-+--...|+..++.+..|.++.+-.+ .+-.-|+.. +.+...++|...-+.
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~--~~~~A~~Ai~~l~g~ 67 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFR--DLESSASAVRNLNGY 67 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEES--SHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEEC--CHHHHHHHHHHhCCC
Confidence 5667 88888889999999999999999998544 345666643 667777777654443
No 78
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=36.02 E-value=52 Score=21.61 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEEEEeccChhhHHH---HHHHHhcCC-CceeEEEEcCC
Q 025287 8 TMVLKVDLQCSKCYKK---VKKVLCKFP-QIQDQIFDEKT 43 (255)
Q Consensus 8 t~vLKV~M~C~gCakK---IkKAL~kI~-GV~sV~VDlk~ 43 (255)
++++.-.-.|..|.+- ++++..++. +|.-+.+|.++
T Consensus 5 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 44 (85)
T 1fo5_A 5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME 44 (85)
T ss_dssp EEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCC
Confidence 3444447889999643 344445554 56666666543
No 79
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=35.49 E-value=1.1e+02 Score=21.37 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=20.8
Q ss_pred EEEEeccChhhHHH---HHHHHhcCCCceeEEEEcC
Q 025287 10 VLKVDLQCSKCYKK---VKKVLCKFPQIQDQIFDEK 42 (255)
Q Consensus 10 vLKV~M~C~gCakK---IkKAL~kI~GV~sV~VDlk 42 (255)
++....+|..|..- +.+...++.+|.-+.|+..
T Consensus 30 l~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~ 65 (136)
T 1zzo_A 30 LWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGL 65 (136)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECS
T ss_pred EEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 33338899999764 3444455566776666653
No 80
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.09 E-value=1.1e+02 Score=21.23 Aligned_cols=58 Identities=10% Similarity=0.155 Sum_probs=42.7
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC------CeEEEEEeecCHHHHHHHHHHhcC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT------NTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~------~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
..+|.| +|.=+--...|+..++.+..|.++.+-.+. +..-|+.. +.+...++|...-+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~--~~~~a~~A~~~l~g 72 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFM--FPEHAVKAYAEVDG 72 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEES--SHHHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEEC--CHHHHHHHHHHhCC
Confidence 356778 888888889999999999999999885433 45666653 66777777765433
No 81
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=34.77 E-value=2.2e+02 Score=24.39 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=43.9
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCC-ceeEEEEc-CC-C--eEEEEEeecCHHHHHHHHHHhcCCccceeEEeC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQ-IQDQIFDE-KT-N--TVRIKVVCCSPEKIRDKLCCKGEGSIKSIAILE 77 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~G-V~sV~VDl-k~-~--kVTVeG~~vdpekLv~aL~kKggk~IK~IEIVs 77 (255)
..+|.| =-+-.|=-.+|...|++-.- |.++.+.. .+ + ++||... ..+.+++.|.+++.|.|.-+.|..
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~--g~e~~ieqL~kQL~KLidVikV~d 102 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK--GDDKTIEQIEKQAYKLVEVVKVTP 102 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE--ECTTHHHHHHHHHTTSTTEEEEEE
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEE--CCHHHHHHHHHHhcCcCceEEEEE
Confidence 355666 33567888888888877653 77777742 22 3 3433332 127889999999998766665554
No 82
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.55 E-value=1.1e+02 Score=21.91 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=40.6
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC-----CeEEEEEeecCHHHHHHHHHHhcC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT-----NTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~-----~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
.+|.| +|.=.--...|+..+..+..|.++.+-.+. +...|+. .+.+...++|...-+
T Consensus 16 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f--~~~~~a~~A~~~l~g 78 (114)
T 2do0_A 16 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTF--EQSIEAVQAISMFNG 78 (114)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEE--SSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEE--CCHHHHHHHHHHhCC
Confidence 46777 888888889999999999999999886542 2344443 256777777775433
No 83
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.47 E-value=33 Score=25.59 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=30.1
Q ss_pred EEEEEeccChhhHH-----HHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHh
Q 025287 9 MVLKVDLQCSKCYK-----KVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 9 ~vLKV~M~C~gCak-----KIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kK 65 (255)
++|-.--.|..|.. ++++.|..+ ||.-..+|+.. + ..+++.|+.+
T Consensus 10 V~vy~~~~C~~C~~~~~~~~ak~~L~~~-gi~y~~vdI~~----------~-~~~~~~l~~~ 59 (111)
T 2ct6_A 10 IRVFIASSSGFVAIKKKQQDVVRFLEAN-KIEFEEVDITM----------S-EEQRQWMYKN 59 (111)
T ss_dssp EEEEECSSCSCHHHHHHHHHHHHHHHHT-TCCEEEEETTT----------C-HHHHHHHHHS
T ss_pred EEEEEcCCCCCcccchhHHHHHHHHHHc-CCCEEEEECCC----------C-HHHHHHHHHH
Confidence 44445778999997 899999875 67666666543 1 3456666665
No 84
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A
Probab=34.40 E-value=8.4 Score=33.38 Aligned_cols=13 Identities=31% Similarity=0.256 Sum_probs=9.4
Q ss_pred HHHHHHHHHhcCC
Q 025287 56 EKIRDKLCCKGEG 68 (255)
Q Consensus 56 ekLv~aL~kKggk 68 (255)
..++++|++....
T Consensus 200 ~~~~~wI~~~i~~ 212 (274)
T 2o8l_A 200 ENVRNFLKQNIED 212 (274)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhh
Confidence 6688888876544
No 85
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=34.20 E-value=95 Score=22.82 Aligned_cols=56 Identities=13% Similarity=0.034 Sum_probs=42.2
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
..|.| +|.=+--...|+..+..+-.|.++.+..+ +..-|+.. +.+...++|...-+
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~--~~~~a~~Ai~~l~g 73 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFV--RKEDMTYAVRKLDN 73 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEES--SHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEEC--CHHHHHHHHHHhCC
Confidence 45667 77777778899999999999999998655 77777753 66777777775433
No 86
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=33.91 E-value=54 Score=22.59 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=21.6
Q ss_pred EEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcC
Q 025287 8 TMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEK 42 (255)
Q Consensus 8 t~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk 42 (255)
.++|-..-.|..|.+ ++..|..+ ||.-..+|..
T Consensus 7 ~v~ly~~~~C~~C~~-~~~~L~~~-~i~~~~~di~ 39 (92)
T 2khp_A 7 DVIIYTRPGCPYCAR-AKALLARK-GAEFNEIDAS 39 (92)
T ss_dssp CEEEEECTTCHHHHH-HHHHHHHT-TCCCEEEEST
T ss_pred cEEEEECCCChhHHH-HHHHHHHc-CCCcEEEECC
Confidence 455555778999974 67777776 5655555543
No 87
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=33.42 E-value=1.3e+02 Score=21.31 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhc
Q 025287 21 YKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKG 66 (255)
Q Consensus 21 akKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKg 66 (255)
...+.++|.++++|..+-.-...--+.+....-|.+.|.+.|.++.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D~ll~v~~~d~~~l~~~l~~~l 60 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYDLVALVRLKDVEELDDVVTQGI 60 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSSEEEEEEESSGGGHHHHCCCCC
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCCEEEEEEECCHHHHHHHHHHhc
Confidence 5889999999999999887666555555554357888877765443
No 88
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=33.37 E-value=79 Score=23.31 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=20.6
Q ss_pred EEEEE-eccChhhHHHH------HHHHhcCCCceeEEEEc
Q 025287 9 MVLKV-DLQCSKCYKKV------KKVLCKFPQIQDQIFDE 41 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKI------kKAL~kI~GV~sV~VDl 41 (255)
++|.+ .-.|..|..-. .+....+.+|.-+.||.
T Consensus 34 vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~ 73 (134)
T 2fwh_A 34 VMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANV 73 (134)
T ss_dssp EEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEEC
T ss_pred EEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeC
Confidence 34444 77899998743 33344556677777665
No 89
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=32.56 E-value=65 Score=23.74 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=41.0
Q ss_pred EEEEEE--eccChhhHHHHHHHHhcC-----CCceeEEE-EcCCCeEEEEEeecCHHHHHHHHHHhcCCccceeEEe
Q 025287 8 TMVLKV--DLQCSKCYKKVKKVLCKF-----PQIQDQIF-DEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAIL 76 (255)
Q Consensus 8 t~vLKV--~M~C~gCakKIkKAL~kI-----~GV~sV~V-Dlk~~kVTVeG~~vdpekLv~aL~kKggk~IK~IEIV 76 (255)
.++|.| +++=..=..+|++.|... .+...+++ |..++-||+..+ -|-+..+..+++..-+ +++||
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sd-dDl~~A~~~~~~~~~~---~leiW 75 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSD-EDWNVAKEMLAENNEK---FLNIR 75 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCST-THHHHHHHHHHHHCCC---EEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCH-HHHHHHHHHHHhhhcC---eEEEE
Confidence 356666 555566677888888754 35566777 667778888766 3444444444454444 77776
No 90
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=32.41 E-value=1.1e+02 Score=21.85 Aligned_cols=55 Identities=7% Similarity=0.117 Sum_probs=41.0
Q ss_pred EEEEE-eccCh-hhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 9 MVLKV-DLQCS-KCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 9 ~vLKV-~M~C~-gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
.+|.| +|.=+ --...|+..+..+..|.++.+ ..+-.-|+.. +.+...++|...-+
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~--~~~~A~~A~~~l~g 84 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYS--NERHARAAVLGENG 84 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECS--SSHHHHHHHHHHTT
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEEC--CHHHHHHHHHHcCC
Confidence 46778 88877 778999999999999999998 4666667643 55666666655433
No 91
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=32.40 E-value=84 Score=21.43 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=7.1
Q ss_pred HHHHHHHhcCCCceeE
Q 025287 22 KKVKKVLCKFPQIQDQ 37 (255)
Q Consensus 22 kKIkKAL~kI~GV~sV 37 (255)
..+.+.|.+++||.+|
T Consensus 60 ~~l~~~L~~~~~V~~v 75 (88)
T 2ko1_A 60 TTLMDKLRKVQGVFTV 75 (88)
T ss_dssp HHHHHHHTTCTTEEEE
T ss_pred HHHHHHHhcCCCceEE
Confidence 3444444444444444
No 92
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=32.05 E-value=1.2e+02 Score=21.87 Aligned_cols=58 Identities=9% Similarity=-0.034 Sum_probs=41.4
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC--C----eEEEEEeecCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT--N----TVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~--~----kVTVeG~~vdpekLv~aL~kKggk 68 (255)
.+|.| +|.=+--...|+..++.+..|.++.+-.+. + -.-|+. .+.+...++|...-+.
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f--~~~~~a~~A~~~l~g~ 90 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY--DNPVSAQAAIQSMNGF 90 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEEC--SSHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEE--CCHHHHHHHHHHcCCC
Confidence 46777 888888889999999999999999986543 2 244443 3667777777654443
No 93
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=32.05 E-value=1.3e+02 Score=21.16 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=42.1
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC-CC----eEEEEEeecCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK-TN----TVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk-~~----kVTVeG~~vdpekLv~aL~kKggk 68 (255)
.+|.| +|.=.-....|+..++.+..|.++.+-.. ++ ..-|+. .+.+...++|...-+.
T Consensus 30 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f--~~~~~a~~A~~~l~g~ 93 (107)
T 3ulh_A 30 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHF--ERKADALKAMKQYNGV 93 (107)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEE--SSHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEE--CCHHHHHHHHHHhCCC
Confidence 56778 88888889999999999999999988644 22 334443 3677777777764443
No 94
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=31.91 E-value=1.3e+02 Score=21.09 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=42.2
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC-----CeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT-----NTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~-----~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
..+|.| +|.-.--...|+..++.+..|.++.+-... +-.-|+. .+.+...++|...-+.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f--~~~~~A~~Ai~~l~g~ 79 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKF--SSHTEAQAAIHALHGS 79 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEE--SSHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEe--CCHHHHHHHHHHHcCC
Confidence 356778 888888889999999999999999986542 3344443 3667777777654443
No 95
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=31.83 E-value=1.3e+02 Score=21.13 Aligned_cols=53 Identities=8% Similarity=0.142 Sum_probs=40.3
Q ss_pred EEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC-CCeEEEEEeecCHHHHHHHHHH
Q 025287 10 VLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK-TNTVRIKVVCCSPEKIRDKLCC 64 (255)
Q Consensus 10 vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk-~~kVTVeG~~vdpekLv~aL~k 64 (255)
+|.| +|.=+--...|+..++.+..|.++.+-.+ .+-.-|+-. +.+...++|..
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~--~~~~a~~A~~~ 56 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFE--DPRDAEDAVRG 56 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECS--SHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEEC--CHHHHHHHHHH
Confidence 4667 77777788999999999999999999775 677777753 55656666654
No 96
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.41 E-value=1.3e+02 Score=20.69 Aligned_cols=56 Identities=7% Similarity=0.086 Sum_probs=42.5
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
..+|.| +|.-+--...|+..++.+..|.++.+. .+..-|+.. +.+...++|...-+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~--~~~~A~~A~~~l~g 64 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIE--DKTAAEDAIRNLHH 64 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEES--SHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEEC--CHHHHHHHHHHhcC
Confidence 356778 888888899999999999999999887 566666653 56666666654433
No 97
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.19 E-value=1.4e+02 Score=21.02 Aligned_cols=56 Identities=7% Similarity=0.204 Sum_probs=41.6
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC-------CCeEEEEEeecCHHHHHHHHHHh
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK-------TNTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk-------~~kVTVeG~~vdpekLv~aL~kK 65 (255)
..+|.| +|.=.--...|+..+..+..|.+|.+-.. .+-.-|+.. +.+...++|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~--~~~~a~~A~~~l 78 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFI--TKQDAKKAFNAL 78 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEES--SHHHHHHHHHHH
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEEC--CHHHHHHHHHHh
Confidence 356777 88877778899999999999999998555 455666653 566666666654
No 98
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=30.21 E-value=1.5e+02 Score=22.99 Aligned_cols=58 Identities=9% Similarity=0.135 Sum_probs=42.4
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC--C----CeEEEEEeecCHHHHHHHHHHhcC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK--T----NTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk--~----~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
..+|.| +|.-.--...|+.+++.+..|.+|.+... + +..-|+. .+.+....+|...-+
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f--~~~~~A~~Ai~~l~g 136 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEY--ETHKQALAAKEALNG 136 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEE--SSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEE--CCHHHHHHHHHHhCC
Confidence 356788 99888889999999999999999998654 2 3344443 356667777765433
No 99
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}
Probab=30.17 E-value=86 Score=26.39 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=33.8
Q ss_pred hhHHHHHHHHhcCCCceeEEEEcCCC---------------eEEEEEe--ecCHHHHHHHHHHh
Q 025287 19 KCYKKVKKVLCKFPQIQDQIFDEKTN---------------TVRIKVV--CCSPEKIRDKLCCK 65 (255)
Q Consensus 19 gCakKIkKAL~kI~GV~sV~VDlk~~---------------kVTVeG~--~vdpekLv~aL~kK 65 (255)
||-=-++..+.+|+||.++.+-..++ .|.|+.+ .++-++|++.+.+.
T Consensus 10 GCFWg~E~~f~~l~GV~~t~~GYagG~~~nPtY~~v~~HaE~V~V~yDp~~isy~~LL~~F~~~ 73 (168)
T 4gwb_A 10 GCFWGMQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERISYRRILELFFQI 73 (168)
T ss_dssp SCHHHHHHHHTTSTTEEEEEEEEESSSCTTCBTTBCTTCEEEEEEEECTTTCCHHHHHHHHHHH
T ss_pred cCccchHHHHhcCCCeEEEEEEcCCCcCCCCcccccCceEEEEEEEECCCCCCHHHHHHHHHhh
Confidence 45555677889999999999988766 3445543 26777888887763
No 100
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=30.17 E-value=1.3e+02 Score=20.49 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=41.5
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCC----eEEEEEeecCHHHHHHHHHHhcC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTN----TVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~----kVTVeG~~vdpekLv~aL~kKgg 67 (255)
.+|.| +|.-+--...|+..++.+..|.++.+..+++ ...|+. .+.+...++|...-+
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f--~~~~~a~~a~~~l~g 70 (92)
T 2dgv_A 9 CQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKF--ESPEVAERACRMMNG 70 (92)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEE--SSHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEE--CCHHHHHHHHHHhCC
Confidence 46778 8888888999999999999999999876543 233443 366777777775433
No 101
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=29.84 E-value=1e+02 Score=25.67 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHH
Q 025287 21 YKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCC 64 (255)
Q Consensus 21 akKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~k 64 (255)
-..++.+|..+ |.++|+.=+.+|.|.++.. .+.+.|..+|+.
T Consensus 24 MadLr~~l~~l-Gf~~V~TyI~SGNvvF~s~-~~~~~l~~~ie~ 65 (183)
T 2hiy_A 24 MAELRQELTNL-GLEKVESYINSGNIFFTSI-DSKAQLVEKLET 65 (183)
T ss_dssp HHHHHHHHHHH-TCEEEEEETTTTEEEEEEC-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCccceEEEecCCEEEecC-CCHHHHHHHHHH
Confidence 45677888887 9999999999999999987 475555555544
No 102
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.82 E-value=1.4e+02 Score=21.61 Aligned_cols=58 Identities=9% Similarity=-0.032 Sum_probs=42.3
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC----CCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK----TNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk----~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
..+|.| +|.-+--...|++.++.+..|.++.+-.+ .+-.-|+.. +.+...++|...-+
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~--~~~~A~~Ai~~l~g 91 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE--NSADADRAREKLHG 91 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECC--CSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEEC--CHHHHHHHHHHcCC
Confidence 356778 88888889999999999999999998654 345556543 55666666665333
No 103
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=29.72 E-value=1.4e+02 Score=27.71 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=44.0
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC------CCeEEEEEeecCHHHHHHHHHHhcCCccc
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK------TNTVRIKVVCCSPEKIRDKLCCKGEGSIK 71 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk------~~kVTVeG~~vdpekLv~aL~kKggk~IK 71 (255)
.+|.| ||.=.--...|..++..+..|.+|.|-.. .+...|+. .+.+.+..+|...-+..|.
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F--~~~e~A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEY--EHERDMHSAYKHADGKKID 170 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEee--ccHHHHHHHHHHcCCCEEC
Confidence 46788 88888888999999999999999988543 23455554 2667777788765444443
No 104
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.67 E-value=1.7e+02 Score=21.54 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=41.4
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHH
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLC 63 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~ 63 (255)
.+|-| +|.-+--...|+.+++....|.+|.+....+..-|+-. +.+...++|.
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~--~~~~A~~Ai~ 69 (104)
T 1wex_A 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFE--NIDSAKECVT 69 (104)
T ss_dssp SEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEES--SHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEEC--CHHHHHHHHH
Confidence 36778 99988889999999999999999998877777878753 4444444544
No 105
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=29.59 E-value=1.3e+02 Score=20.21 Aligned_cols=58 Identities=7% Similarity=0.122 Sum_probs=42.2
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEc-------CCCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDE-------KTNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDl-------k~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
..+|.| +|.-+--...|+..++.+..|.++.+-. ..+..-|+.. +.+...++|...-+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~--~~~~a~~A~~~l~g 69 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFE--NPDEAEKALKHMDG 69 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEES--SHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEe--cHHHHHHHHHHcCC
Confidence 346778 8888888999999999999999998733 2344555543 66777777775433
No 106
>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_W 4a1c_W 4a1e_W
Probab=29.55 E-value=60 Score=25.81 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=32.6
Q ss_pred CCCCCceEEEEEEecc-C------hhhH----HHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCc
Q 025287 1 MGEKKVTTMVLKVDLQ-C------SKCY----KKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGS 69 (255)
Q Consensus 1 Ma~k~vtt~vLKV~M~-C------~gCa----kKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~ 69 (255)
|+-+.+.+-.+.|+|| + .+++ +-|++.+.+.=|..+|.+| ..|-++|+++|-+.
T Consensus 1 ~~~~~vvtreyTInlhK~ihgv~fkKrAprAlkeIrkFa~K~Mgt~dV~ID---------------~~LNk~vWakGirn 65 (111)
T 4a17_W 1 MVKQEEKSIDTTVNLHKQCHKISFKKKAPRAIREIVAIAKKTMGTDDVRID---------------TELNKFIWSNGIRN 65 (111)
T ss_dssp -CCCCCCEEEEEEEHHHHTTTCCGGGHHHHHHHHHHHHHHHHHCCSCEEEC---------------HHHHHHHHTTCSSS
T ss_pred CCCCcceEEEEEEECeeeeecCCccccCHHHHHHHHHHHHHHcCCCceEEC---------------cHHHHHHHhccccC
Confidence 5555566778888776 2 2223 2244444444455555555 56999999998763
No 107
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.29 E-value=1.5e+02 Score=20.74 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=42.3
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
.+|-| ++ +--...|+..+..+..|.++.+....+..-|+.. +.+...++|...-+
T Consensus 16 ~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~--~~~~a~~Ai~~l~g 71 (97)
T 1x5p_A 16 NTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE--KMESADQAVAELNG 71 (97)
T ss_dssp SEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEES--SHHHHHHHHHHTTT
T ss_pred CEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEEC--CHHHHHHHHHHhCC
Confidence 35667 76 4457889999999999999999888888888753 67777777776433
No 108
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=29.22 E-value=83 Score=28.81 Aligned_cols=67 Identities=15% Similarity=0.256 Sum_probs=47.8
Q ss_pred EEEE-eccChhhHHHHHHHHhcC---CCceeEEEEcCCCeEEEEEee-------c-C-HHHHHHHHHHhcCCc----cce
Q 025287 10 VLKV-DLQCSKCYKKVKKVLCKF---PQIQDQIFDEKTNTVRIKVVC-------C-S-PEKIRDKLCCKGEGS----IKS 72 (255)
Q Consensus 10 vLKV-~M~C~gCakKIkKAL~kI---~GV~sV~VDlk~~kVTVeG~~-------v-d-pekLv~aL~kKggk~----IK~ 72 (255)
.++| ||+=.--.+.|+++|.++ +.|.=...++.+.+|+|.|.. + + ...|+++|...||=+ ..+
T Consensus 113 ~v~vaG~T~~e~~~~I~~~L~~~~~~P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~tl~~ai~~AGG~t~~a~~~~ 192 (359)
T 2j58_A 113 KVQVAGKTVSQVRQDITSRLTTYIESPQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPLTVMDAINAAGGLAADADWRN 192 (359)
T ss_dssp EEECTTCCHHHHHHHHHHHHTTTSSSCCEEEEEEECCSCEEEEEESBSSCEEEECCSSCCBHHHHHHHTTSBCTTBCTTC
T ss_pred eEEECCCCHHHHHHHHHHHHHHhccCCeEEEEEccCCceEEEEEceecCCeEEEeCCCCCcHHHHHHHcCCCCcccccce
Confidence 4677 899999999999999875 233322336677899999951 2 2 579999999988732 345
Q ss_pred eEEe
Q 025287 73 IAIL 76 (255)
Q Consensus 73 IEIV 76 (255)
|.|+
T Consensus 193 V~l~ 196 (359)
T 2j58_A 193 VVLT 196 (359)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 109
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=29.04 E-value=1.8e+02 Score=21.77 Aligned_cols=71 Identities=7% Similarity=0.062 Sum_probs=46.1
Q ss_pred CceEEEEEE--eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEE--EeecCHHHHHHHHHHhcCC--ccceeEEe
Q 025287 5 KVTTMVLKV--DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIK--VVCCSPEKIRDKLCCKGEG--SIKSIAIL 76 (255)
Q Consensus 5 ~vtt~vLKV--~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVe--G~~vdpekLv~aL~kKggk--~IK~IEIV 76 (255)
+|..+.|.| ..+=-|=..-+.+.-.+| |++-..-|+.+++|.|. |..-+.+.++++|+..+-. .|.+|++-
T Consensus 9 ~m~~~~i~V~G~VQGVGFR~~v~~~A~~l-gL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~gP~~a~V~~v~~~ 85 (102)
T 1urr_A 9 QIFALDFEIFGRVQGVFFRKHTSHEAKRL-GVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNRIPNAKVSKAEFS 85 (102)
T ss_dssp CEEEEEEEEEEECSSSSHHHHHHHHHHHH-TCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCCSTTCEEEEEEEC
T ss_pred hcEEEEEEEEEeECCcChhHHHHHHHHHh-CCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcCCCccEEEEEEEE
Confidence 355667777 566666666666666665 78888889999977765 4423356677888754422 25555543
No 110
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=29.02 E-value=78 Score=22.11 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCC-ceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287 21 YKKVKKVLCKFPQ-IQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 21 akKIkKAL~kI~G-V~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk 68 (255)
..+|+..|....+ |.+..++ ..|+++.. .-+.+.+.++|...++.
T Consensus 19 ~g~v~~~L~~~~~~I~~~~Y~---~~V~l~v~vp~~~~~~~~~~L~d~t~G 66 (76)
T 3lh2_S 19 ITGILWLLGQVDGKIINSDVQ---AFVLLRVALPAAKVAEFSAKLADFSGG 66 (76)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE---EEEEEEEEECC-CC-CHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCEEEccccc---CeEEEEEEECHHHHHHHHHHHHHHhCC
Confidence 5788888888765 4444453 23776653 23567789999988876
No 111
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.14 E-value=1.5e+02 Score=20.62 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=41.0
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC------CCeEEEEEeecCHHHHHHHHHHh
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK------TNTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk------~~kVTVeG~~vdpekLv~aL~kK 65 (255)
.+|.| +|.-+--...|+..++.+..|.++.+-.. .+..-|+.. +.+...++|...
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~--~~~~A~~A~~~l 74 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFE--NIDDAKDAMMAM 74 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECS--SHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEEC--CHHHHHHHHHHh
Confidence 46777 88888889999999999999999998553 235566642 566666777553
No 112
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=28.10 E-value=1.4e+02 Score=20.08 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=41.4
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC--CC----eEEEEEeecCHHHHHHHHHHhcC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK--TN----TVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk--~~----kVTVeG~~vdpekLv~aL~kKgg 67 (255)
.+|.| +|.-+--...|+..++.+..|.++.+-.+ ++ -.-|+. .+.+...++|...-+
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f--~~~~~A~~A~~~l~g 70 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSF--FNKWDAENAIQQMGG 70 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEE--SSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEE--CCHHHHHHHHHHcCC
Confidence 56778 88888889999999999999999998654 22 333443 366777777775433
No 113
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=27.98 E-value=43 Score=24.49 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=29.1
Q ss_pred HHHHHHHhcC------CC---ceeEEEEcCCCeEEEE--Eee---cCH-HHHHHHHHHhcCCccceeEEe
Q 025287 22 KKVKKVLCKF------PQ---IQDQIFDEKTNTVRIK--VVC---CSP-EKIRDKLCCKGEGSIKSIAIL 76 (255)
Q Consensus 22 kKIkKAL~kI------~G---V~sV~VDlk~~kVTVe--G~~---vdp-ekLv~aL~kKggk~IK~IEIV 76 (255)
.+|+++|.+| +| |+-+.|| ++.|.|. |.| ++. .-|.++|+.+.. .|+.|+.+
T Consensus 7 ~~V~~~L~~iRP~L~~dGGGdvelv~v~--~g~V~v~l~GaC~gc~Tlk~gIe~~L~~~vp-ei~~V~~v 73 (74)
T 1th5_A 7 ENVEKVLNEIRPYLAGTGGGGLQFLMIK--GPIVKVRLTGPAAVVRTVRIAVSKKLREKIP-SIQIVQLL 73 (74)
T ss_dssp HHHHHHHTTTHHHHTTTTCCCCCCCEEE--TTEEEECCCSSSSSSSSHHHHHHHHHHHHCT-TCSEEEEC
T ss_pred HHHHHHHHHHhHHHHhcCCCcEEEEEEe--CCEEEEEEecCCcchHHHHHHHHHHHHHHCC-CCcEEEeC
Confidence 4566666555 44 7777776 6888885 443 222 234445555443 25555544
No 114
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=27.65 E-value=1.5e+02 Score=20.33 Aligned_cols=56 Identities=7% Similarity=0.024 Sum_probs=39.8
Q ss_pred EEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC-----CeEEEEEeecCHHHHHHHHHHhcC
Q 025287 10 VLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT-----NTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 10 vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~-----~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
+|.| +|.-.--...|+..++.+..|.++.+-.+. +..-|+. .+.+...++|...-+
T Consensus 18 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f--~~~~~a~~A~~~l~g 79 (95)
T 2ywk_A 18 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCF--KHPESVSYAIALLNG 79 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEE--SSTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEE--CCHHHHHHHHHHhCC
Confidence 5667 887777789999999999999999986542 2344443 256667777775433
No 115
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=27.22 E-value=1.4e+02 Score=19.91 Aligned_cols=35 Identities=14% Similarity=0.353 Sum_probs=21.7
Q ss_pred EEEEE-eccChhhHHH---HHHHHhcCCCceeEEEEcCC
Q 025287 9 MVLKV-DLQCSKCYKK---VKKVLCKFPQIQDQIFDEKT 43 (255)
Q Consensus 9 ~vLKV-~M~C~gCakK---IkKAL~kI~GV~sV~VDlk~ 43 (255)
++|.+ .-.|..|..- ++++...+.+|.-+.+|...
T Consensus 19 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~ 57 (104)
T 2e0q_A 19 AVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDE 57 (104)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCC
Confidence 34444 8889999754 34444556667666666543
No 116
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=27.13 E-value=1.5e+02 Score=22.99 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=39.0
Q ss_pred EEEEE--eccChhhHHHHHHHHhc-----CCCceeEEE-EcCCCeEEEEEeecCHHHHHHHHHHhcCCccceeEEe
Q 025287 9 MVLKV--DLQCSKCYKKVKKVLCK-----FPQIQDQIF-DEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAIL 76 (255)
Q Consensus 9 ~vLKV--~M~C~gCakKIkKAL~k-----I~GV~sV~V-Dlk~~kVTVeG~~vdpekLv~aL~kKggk~IK~IEIV 76 (255)
++|.| +++=..=..+|.+.|.- +.++..+++ |..++-|++..+ -|-+..+..+++..-+ .++||
T Consensus 25 ~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sd-dDl~~A~e~~~e~~~~---~l~Iw 96 (98)
T 1q1o_A 25 FTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSD-EDWNVAKEMLAENNEK---FLNIR 96 (98)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSH-HHHHHHHHHHHHTTCC---EEEEE
T ss_pred EEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCH-HHHHHHHHHHHhhhcC---eEEEE
Confidence 55666 44445556778877764 335677887 656678888766 3444444444444334 77776
No 117
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.12 E-value=1.5e+02 Score=20.27 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=40.0
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC-CC----eEEEEEeecCHHHHHHHHHHhcC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK-TN----TVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk-~~----kVTVeG~~vdpekLv~aL~kKgg 67 (255)
..+|.| +|.=+--...|++.+..+ +|.++.+-.. ++ ..-|+- .+.+...++|. .-+
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f--~~~~~a~~A~~-~~g 71 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDF--SNEEEVKQALK-CNR 71 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEEC--SSHHHHHHHHH-SCS
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEE--CCHHHHHHHHH-hCC
Confidence 356777 887777789999999999 9999988544 33 333442 36777888887 443
No 118
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.01 E-value=1.7e+02 Score=20.62 Aligned_cols=52 Identities=8% Similarity=0.173 Sum_probs=38.2
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCC------eEEEEEeecCHHHHHHHH
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTN------TVRIKVVCCSPEKIRDKL 62 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~------kVTVeG~~vdpekLv~aL 62 (255)
..+|.| +|.=+--...|+..+..+ ||.+|.+-.+.. -.-|+- .+.+...++|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~-gi~~v~i~~~~~~g~~~g~afV~f--~~~~~a~~A~ 73 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEF--DEVDSLKEAL 73 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTS-CEEEEEEEECSSSCSEEEEEEEEE--SSHHHHHHHG
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhC-CceEEEEeecCCCCccceEEEEEE--CCHHHHHHHH
Confidence 357778 888777889999999999 899999865432 333443 3677777777
No 119
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.74 E-value=1.6e+02 Score=20.23 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=40.9
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC------CeEEEEEeecCHHHHHHHHHHh
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT------NTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~------~kVTVeG~~vdpekLv~aL~kK 65 (255)
.+|.| +|.=+--...|++.++.+..|.++.+-.+. +..-|+.. +.+...++|...
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~--~~~~a~~A~~~l 67 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFS--DSECARRALEQL 67 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEES--CHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEEC--CHHHHHHHHHHh
Confidence 35677 888888889999999999999999986553 35666643 566677777643
No 120
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=26.66 E-value=1.1e+02 Score=22.70 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCCceeE---EEEcCCCeEEEE
Q 025287 21 YKKVKKVLCKFPQIQDQ---IFDEKTNTVRIK 49 (255)
Q Consensus 21 akKIkKAL~kI~GV~sV---~VDlk~~kVTVe 49 (255)
..+|+++|.+++||.+| .+-..++.+.|+
T Consensus 12 ~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~ 43 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPHRVRIRRVGTKYFIE 43 (107)
T ss_dssp HHHHHHHHTTCSSCEEEEEEEEECSCC-CEEE
T ss_pred HHHHHHHHHcCCCccccEEEEEEEECCcEEEE
Confidence 47899999999997766 454444544444
No 121
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.42 E-value=1.7e+02 Score=20.43 Aligned_cols=55 Identities=7% Similarity=0.031 Sum_probs=39.4
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC-----CeEEEEEeecCHHHHHHHHHHh
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT-----NTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~-----~kVTVeG~~vdpekLv~aL~kK 65 (255)
.+|.| +|.=+--...|+..+..+..|.++.+-... +..-|+. .+.+...++|...
T Consensus 18 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f--~~~~~a~~A~~~l 78 (100)
T 2do4_A 18 HKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEY--ENESQASQAVMKM 78 (100)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEE--CCHHHHHHHHHHh
Confidence 45677 777777788999999999999999986543 3445554 2566677777653
No 122
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=26.40 E-value=94 Score=20.04 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEEeccChhhHHHHHHHHhcCCCceeEEEEcC
Q 025287 9 MVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEK 42 (255)
Q Consensus 9 ~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk 42 (255)
++|-..-.|..|.+ ++..|..+ ||.-..+|..
T Consensus 3 i~~y~~~~C~~C~~-~~~~l~~~-~i~~~~~di~ 34 (75)
T 1r7h_A 3 ITLYTKPACVQCTA-TKKALDRA-GLAYNTVDIS 34 (75)
T ss_dssp EEEEECTTCHHHHH-HHHHHHHT-TCCCEEEETT
T ss_pred EEEEeCCCChHHHH-HHHHHHHc-CCCcEEEECC
Confidence 33444668999975 66677766 5655555543
No 123
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*
Probab=25.74 E-value=1e+02 Score=26.67 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=34.1
Q ss_pred EeccChhhHHHHHHHHhcCCCceeEEEEcCCCe-------------------EEEEEe--ecCHHHHHHHHHH
Q 025287 13 VDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNT-------------------VRIKVV--CCSPEKIRDKLCC 64 (255)
Q Consensus 13 V~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~k-------------------VTVeG~--~vdpekLv~aL~k 64 (255)
+.+-|==| ++..+.+|+||.++.+-..++. |.|+.+ .++-++|++.+++
T Consensus 48 fagGCFWg---~E~~F~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~TGHaEaV~V~yDp~~isy~~LL~~F~~ 117 (199)
T 1fvg_A 48 FGMGCFWG---AERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWE 117 (199)
T ss_dssp EEESSHHH---HHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHHH
T ss_pred EecCCeee---eHHHHhhCCCeEEEEeeccCCCCCCCChhheecCCCCCeEEEEEEECCCcCCHHHHHHHHHH
Confidence 35555444 5666889999999999877665 555543 2566788887775
No 124
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.58 E-value=1.2e+02 Score=20.40 Aligned_cols=54 Identities=13% Similarity=0.042 Sum_probs=39.2
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC------CCeEEEEEeecCHHHHHHHHHH
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK------TNTVRIKVVCCSPEKIRDKLCC 64 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk------~~kVTVeG~~vdpekLv~aL~k 64 (255)
.+|.| +|.-+--...|+..++.+..|.++.+-.. .+-.-|+-. +.+...++|..
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~--~~~~a~~A~~~ 66 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFD--SPSAAQKAVTA 66 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEES--CHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEEC--CHHHHHHHHHH
Confidence 36777 88888889999999999999999998654 234555543 55556666654
No 125
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=25.50 E-value=1.2e+02 Score=21.59 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=22.4
Q ss_pred EEEEE-eccChhhHH---HHHHHHhcCCCceeEEEEcCC
Q 025287 9 MVLKV-DLQCSKCYK---KVKKVLCKFPQIQDQIFDEKT 43 (255)
Q Consensus 9 ~vLKV-~M~C~gCak---KIkKAL~kI~GV~sV~VDlk~ 43 (255)
++|.+ .-.|..|.. .+.++...+.+|.-+.||.+.
T Consensus 34 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~ 72 (116)
T 3qfa_C 34 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 72 (116)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTT
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 34444 778999976 344555556677777777554
No 126
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=25.43 E-value=2e+02 Score=20.91 Aligned_cols=57 Identities=7% Similarity=0.008 Sum_probs=43.6
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
..+|.| +|.-+--...|++.++.+..|.++.+. .+-.-|+.. +.+...++|...-+.
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~--~~~~A~~Ai~~l~g~ 88 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFE--EAESAAKAIEEVHGK 88 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECS--SHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEEC--CHHHHHHHHHHcCCC
Confidence 356778 888777889999999999999999988 677777743 566677777654443
No 127
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=25.37 E-value=1.4e+02 Score=22.26 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=39.6
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC--CC----eEEEEEeecCHHHHHHHHHHh
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK--TN----TVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk--~~----kVTVeG~~vdpekLv~aL~kK 65 (255)
.+|.| +|.-+--...|+..++.+..|.+|.+-.+ ++ -.-|+. .+.+...++|...
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f--~~~~~a~~A~~~l 104 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKF--QSGSSAQQAIAGL 104 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEE--SSHHHHHHHHHHT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEE--CCHHHHHHHHHHh
Confidence 36777 88888888999999999999999988543 23 233443 3667777777753
No 128
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=25.24 E-value=2.1e+02 Score=21.19 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=41.5
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC------CeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT------NTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~------~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
.+|.| +|.=.--...|+..++.+..|.++.+-... +..-|+- .+.+...++|...-++
T Consensus 90 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f--~~~~~A~~A~~~l~g~ 154 (168)
T 1b7f_A 90 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY--NKREEAQEAISALNNV 154 (168)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEE--SSHHHHHHHHHHHTTC
T ss_pred CCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEE--CCHHHHHHHHHHhcCC
Confidence 35667 777777789999999999999999986543 2345553 2567777777755444
No 129
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=24.72 E-value=1.2e+02 Score=22.91 Aligned_cols=45 Identities=9% Similarity=-0.046 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287 22 KKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 22 kKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk 68 (255)
.-+-++|-.|+||++|-+. .+-|||+=. .++=+.|...|.....+
T Consensus 39 SPLA~~LF~i~gVk~Vf~g--~dFITVtK~~~~dW~~ikp~V~~~I~~ 84 (91)
T 1pqx_A 39 PAFINDILKVEGVKSIFHV--MDFISVDKENDANWETVLPKVEAVFEL 84 (91)
T ss_dssp CHHHHHHHHSTTEEEEEEE--TTEEEEEECTTSCSTTTHHHHHHHTCS
T ss_pred CHHHHHhhCCCCeeEEEEe--CCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 4566778899999999988 788999753 36778888888876654
No 130
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.68 E-value=1.4e+02 Score=20.90 Aligned_cols=56 Identities=7% Similarity=-0.014 Sum_probs=39.7
Q ss_pred EEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC--CC----eEEEEEeecCHHHHHHHHHHhcC
Q 025287 10 VLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK--TN----TVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 10 vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk--~~----kVTVeG~~vdpekLv~aL~kKgg 67 (255)
+|.| +|.-.--...|+..++.+..|.++.+-.. ++ ..-|+. .+.+....+|...-+
T Consensus 10 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f--~~~~~a~~A~~~l~g 72 (104)
T 1p1t_A 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY--QDQETALSAMRNLNG 72 (104)
T ss_dssp CEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEEC--SCHHHHHHHHHHSSS
T ss_pred EEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEE--CCHHHHHHHHHHhCC
Confidence 5677 88888888999999999999999987543 33 333442 266777777765433
No 131
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.61 E-value=1.2e+02 Score=21.33 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=40.8
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC----CeEEEEEeecCHHHHHHHHHHh
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT----NTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~----~kVTVeG~~vdpekLv~aL~kK 65 (255)
..+|.| +|.-+--...|+..++.+..|.++.+..++ +-.-|+. .+.+...++|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f--~~~~~A~~A~~~l 75 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCF--SSPEEATKAVTEM 75 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEE--CCHHHHHHHHHHh
Confidence 456778 888888889999999999999999987552 2344443 3666677777653
No 132
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=24.52 E-value=1.9e+02 Score=20.39 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=39.6
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHh
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kK 65 (255)
.+|.| +|.-+--...|+..+..+..|.+|.+. .+..-|+.. +.+...++|...
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~--~~~~a~~A~~~l 65 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFD--ERDGAVKAMEEM 65 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEES--SHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeC--CHHHHHHHHHHH
Confidence 46777 888888889999999999999998876 445555543 566677777653
No 133
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}
Probab=24.10 E-value=37 Score=27.81 Aligned_cols=38 Identities=16% Similarity=0.023 Sum_probs=33.4
Q ss_pred cCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 30 KFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 30 kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
.+.||.-+++|.+...+.+.+. ++|.+.+.+|..+.+.
T Consensus 102 ~v~gvd~~~fdedGkI~e~~vm-~rP~k~l~al~~~m~~ 139 (155)
T 3flj_A 102 DAVGVDLITLNEGGLIQDFEVV-MRPYKTVGALRDAMNA 139 (155)
T ss_dssp EEEEEEEEEECTTSSEEEEEEE-EECHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEcCCCCEEEEEEE-EChHHHHHHHHHHHHH
Confidence 5678999999989999999998 8999999999988765
No 134
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=23.93 E-value=1.7e+02 Score=19.56 Aligned_cols=58 Identities=19% Similarity=0.084 Sum_probs=41.2
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEc--CC----CeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDE--KT----NTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDl--k~----~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
.+|.| +|.=+--...|++.++.+..|.++.+-. .+ +-.-|+. .+.+...++|...-+.
T Consensus 8 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f--~~~~~a~~A~~~l~g~ 72 (85)
T 3mdf_A 8 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF--ELAEDAAAAIDNMNES 72 (85)
T ss_dssp SEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEE--SSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEE--CCHHHHHHHHHHhCCC
Confidence 35677 8887778899999999999999998732 33 3355554 3667777777654444
No 135
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=23.91 E-value=80 Score=29.37 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCceeEE--EEcCCCeEEEEEeecCHHHHHHHHHHhcCCccce
Q 025287 21 YKKVKKVLCKFPQIQDQI--FDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKS 72 (255)
Q Consensus 21 akKIkKAL~kI~GV~sV~--VDlk~~kVTVeG~~vdpekLv~aL~kKggk~IK~ 72 (255)
..+|.+++...+||.=++ -|...|+..|+-. -+++.|.+++....++++..
T Consensus 19 Ie~I~~a~~~~~gv~LLd~~~D~~~NRsv~T~v-g~pe~v~eaa~~~~~~A~el 71 (325)
T 1qd1_A 19 IDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFV-GRPEDVVEGALNAARAAYQL 71 (325)
T ss_dssp HHHHHHHHHTSTTCEEEEEEEETTTTEEEEEEE-ECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEeCCCCCCCCCceEEEc-cChHHHHHHHHHHHHHHHHh
Confidence 467888888899966555 5778888877765 46888888887766553333
No 136
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=23.68 E-value=1.7e+02 Score=20.62 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=26.6
Q ss_pred EEEEEeccChhhHHHHH----HHHhcCCCceeEEEEcCCCeEEEEEe
Q 025287 9 MVLKVDLQCSKCYKKVK----KVLCKFPQIQDQIFDEKTNTVRIKVV 51 (255)
Q Consensus 9 ~vLKV~M~C~gCakKIk----KAL~kI~GV~sV~VDlk~~kVTVeG~ 51 (255)
+.|.|--.-.+=+.+.. +.+..| |-.++.+.-+.++|||+|.
T Consensus 4 vrisitartkkeaekfaailikvfael-gyndinvtwdgdtvtvegq 49 (62)
T 2gjh_A 4 VRISITARTKKEAEKFAAILIKVFAEL-GYNDINVTWDGDTVTVEGQ 49 (62)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHT-TCCSCEEEECSSCEEEEEE
T ss_pred EEEEEEecchhHHHHHHHHHHHHHHHh-CcccceeEEcCCEEEEEeE
Confidence 44444333333333333 334444 7888899999999999996
No 137
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=23.62 E-value=2.2e+02 Score=20.77 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=17.6
Q ss_pred EEEEE-eccChhhHHHH---HHHHhcCCCceeEEEEc
Q 025287 9 MVLKV-DLQCSKCYKKV---KKVLCKFPQIQDQIFDE 41 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKI---kKAL~kI~GV~sV~VDl 41 (255)
++|.+ .-.|..|...+ .+...++ +|.-+.|+.
T Consensus 33 vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~ 68 (154)
T 3ia1_A 33 AVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISR 68 (154)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEEC
T ss_pred EEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeC
Confidence 34444 88899997643 3333333 555555444
No 138
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=23.59 E-value=2.1e+02 Score=20.56 Aligned_cols=58 Identities=7% Similarity=-0.036 Sum_probs=42.1
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC------CCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK------TNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk------~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
..+|.| +|.=+--...|++.++.+..|.++.+-.+ .+..-|+.. +.+...++|...-+
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~--~~~~A~~A~~~l~g 104 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFD--NPDSAQVAIKAMNG 104 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEE--SSHHHHHHHHHCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEEC--CHHHHHHHHHHcCC
Confidence 356778 88888888999999999999999998543 234556543 56667777775433
No 139
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.55 E-value=1.8e+02 Score=19.95 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=40.3
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEE-EEc--CCCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQI-FDE--KTNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~-VDl--k~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
.+|.| +|.=+-....|+..+..+..|.++. +-. .++..-|+.. +.+....+|...-+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~--~~~~a~~Ai~~l~g 76 (96)
T 2e44_A 16 RKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYS--SKDQARQALDKLNG 76 (96)
T ss_dssp CCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEES--SHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEEC--CHHHHHHHHHHhCC
Confidence 46777 8888888999999999999999984 543 3444555543 56667777765433
No 140
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=23.30 E-value=1.6e+02 Score=20.09 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEE-eccChhhHH---HHHHHHhcCCC-ceeEEEEcCC
Q 025287 10 VLKV-DLQCSKCYK---KVKKVLCKFPQ-IQDQIFDEKT 43 (255)
Q Consensus 10 vLKV-~M~C~gCak---KIkKAL~kI~G-V~sV~VDlk~ 43 (255)
+|.. .-.|..|.. .+.+....+.+ |.-+.+|...
T Consensus 26 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~ 64 (111)
T 3gnj_A 26 LVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE 64 (111)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCc
Confidence 3444 778999976 34444455554 6666666443
No 141
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=23.06 E-value=2.1e+02 Score=21.65 Aligned_cols=43 Identities=5% Similarity=0.012 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhc
Q 025287 22 KKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKG 66 (255)
Q Consensus 22 kKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKg 66 (255)
.-+-++|-.|+||++|-+. .+-|||+=. .++=+.|...|....
T Consensus 39 SPLA~~LF~i~gVk~Vf~g--~dFITVtK~~~~dW~~ikp~I~~~I 82 (94)
T 2k1h_A 39 PEFINRLFEIEGVKSIFYV--LDFISIDKEDNANWNELLPQIENTF 82 (94)
T ss_dssp CHHHHHHHTSTTEEEEEEE--TTEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CHHHHHhhCCCCeeEEEEe--CCEEEEecCCCCCHHHHHHHHHHHH
Confidence 4467778899999999988 788999753 367777777777653
No 142
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Probab=23.05 E-value=93 Score=23.85 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=29.7
Q ss_pred CCCCCceEEEEEEeccC------hhhH----HHHHHHHhcCCCce--eEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 1 MGEKKVTTMVLKVDLQC------SKCY----KKVKKVLCKFPQIQ--DQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 1 Ma~k~vtt~vLKV~M~C------~gCa----kKIkKAL~kI~GV~--sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
|+.+.+.+..+.|+||= .+.+ +-|++.+.+.=|.. +|.+| ..|-++|+++|-+
T Consensus 1 m~~~~~vtreyTInl~ki~~~~~kkRAprAik~Irkfa~k~m~t~~~dVriD---------------~~LNk~iW~rGir 65 (92)
T 1vq8_X 1 MSASDFEERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLD---------------PSINEAAWARGRA 65 (92)
T ss_dssp -------CEEEEEECGGGGGSCGGGHHHHHHHHHHHHHHHHTTCCGGGEEEC---------------HHHHHHHTTTCSS
T ss_pred CCcccceeEEEEEEhHHhcCCCccccCHHHHHHHHHHHHHHhCCCcccEEEC---------------cHHHHHHHhcccC
Confidence 66654566777776653 2222 34556666665666 66666 5688899998875
No 143
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=23.00 E-value=2.3e+02 Score=20.77 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=41.1
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC------CCeEEEEEeecCHHHHHHHHHHh
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK------TNTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk------~~kVTVeG~~vdpekLv~aL~kK 65 (255)
..+|.| +|.=.--...|++.++.+..|.++.+-.+ .+-.-|+.. +.+...++|...
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~--~~~~a~~A~~~l 125 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE--LAEDAAAAIDNM 125 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEES--CHHHHHHHHHHS
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEEC--CHHHHHHHHHHh
Confidence 346777 88777778999999999999999988443 345566643 667777777653
No 144
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.89 E-value=1.9e+02 Score=19.77 Aligned_cols=56 Identities=9% Similarity=0.142 Sum_probs=41.3
Q ss_pred EEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC------CCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 10 VLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK------TNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 10 vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk------~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
+|.| +|.-+--...|+..++.+..|.++.+-.. .+...|+-. +.+...++|...-+
T Consensus 18 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~--~~~~A~~A~~~l~g 80 (94)
T 2e5h_A 18 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFL--DKDSAQNCTRAINN 80 (94)
T ss_dssp SEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEES--CHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEEC--CHHHHHHHHHHcCC
Confidence 5667 88888889999999999999999998543 235666643 66777777765433
No 145
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=22.87 E-value=2.3e+02 Score=22.25 Aligned_cols=58 Identities=3% Similarity=0.020 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHhcCCCceeEEEEcC-----CCeEEEEEe--ecCHHHHHHHHHHhcCCccceeEEeCCC
Q 025287 18 SKCYKKVKKVLCKFPQIQDQIFDEK-----TNTVRIKVV--CCSPEKIRDKLCCKGEGSIKSIAILEPE 79 (255)
Q Consensus 18 ~gCakKIkKAL~kI~GV~sV~VDlk-----~~kVTVeG~--~vdpekLv~aL~kKggk~IK~IEIVspe 79 (255)
..=.+.|++||.++ |+....++.. .++++++-. .-+.+++++.|.+..+. +-+++++.
T Consensus 15 p~kld~V~~AL~~~-G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~T---R~~~~~~~ 79 (114)
T 3m05_A 15 DKDANYLSDQFIDQ-NVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHT---REEFMTPS 79 (114)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCC---EEEEECC-
T ss_pred HHHHHHHHHHHHHC-CCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCC---ceEEecCC
Confidence 44567899999887 5555554432 335666542 24688999999988776 77777643
No 146
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=22.77 E-value=1.2e+02 Score=20.10 Aligned_cols=31 Identities=10% Similarity=0.292 Sum_probs=19.4
Q ss_pred EEEEEeccChhhHHHHHHHHhcCCCceeEEEEc
Q 025287 9 MVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDE 41 (255)
Q Consensus 9 ~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDl 41 (255)
++|-..-.|..|.+ ++..|.++ ||.-..+|.
T Consensus 3 v~~f~~~~C~~C~~-~~~~l~~~-~i~~~~vdi 33 (81)
T 1h75_A 3 ITIYTRNDCVQCHA-TKRAMENR-GFDFEMINV 33 (81)
T ss_dssp EEEEECTTCHHHHH-HHHHHHHT-TCCCEEEET
T ss_pred EEEEcCCCChhHHH-HHHHHHHC-CCCeEEEEC
Confidence 33434667999975 67777765 565555554
No 147
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.66 E-value=1.4e+02 Score=20.77 Aligned_cols=55 Identities=16% Similarity=0.041 Sum_probs=39.9
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC------CCeEEEEEeecCHHHHHHHHHHh
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK------TNTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk------~~kVTVeG~~vdpekLv~aL~kK 65 (255)
.+|.| +|.=+--...|+..++.+..|.++.+-.+ .+..-|+. .+.+...++|...
T Consensus 13 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f--~~~~~A~~A~~~l 74 (102)
T 2cqb_A 13 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF--ELAEDAAAAIDNM 74 (102)
T ss_dssp SCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECC--SSHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEE--CCHHHHHHHHHHh
Confidence 45667 88777778999999999999999998443 34455654 2567777777653
No 148
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=22.56 E-value=43 Score=26.01 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=32.8
Q ss_pred cCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 30 KFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 30 kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
.+.||.-+++|.++..+.+++. +++.+.+.+|..+.+.
T Consensus 95 ~v~Gv~v~~~~~dGkI~~~~~~-~~P~~~~~~~~~~~~~ 132 (143)
T 3mso_A 95 ELKGIDMIRFDDDGRIVDFEVM-VRPMSGLQALGEEMGR 132 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEE-EESHHHHHHHHHHHHH
T ss_pred EEEEEEEEEECCCCcEEEEEEE-ECcHHHHHHHHHHHHH
Confidence 6788999999888888899988 8999999999887764
No 149
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A
Probab=22.50 E-value=18 Score=31.21 Aligned_cols=9 Identities=0% Similarity=-0.226 Sum_probs=3.7
Q ss_pred HHHHHhcCC
Q 025287 60 DKLCCKGEG 68 (255)
Q Consensus 60 ~aL~kKggk 68 (255)
..+.....+
T Consensus 200 ~~~~~wI~~ 208 (274)
T 2o8l_A 200 ENVRNFLKQ 208 (274)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 150
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=22.48 E-value=1.8e+02 Score=22.25 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=29.0
Q ss_pred ceEEEEEEeccChhhHHHHH----HHHhcCCCceeEEEEcCCCeEEEEEe
Q 025287 6 VTTMVLKVDLQCSKCYKKVK----KVLCKFPQIQDQIFDEKTNTVRIKVV 51 (255)
Q Consensus 6 vtt~vLKV~M~C~gCakKIk----KAL~kI~GV~sV~VDlk~~kVTVeG~ 51 (255)
...+.|.|--.-.+=+.+.. +.+..| |-.++.+.++.++|||+|.
T Consensus 45 akrvrisitartkkeaekfaailikvfael-gyndinvtfdgdtvtvegq 93 (106)
T 1qys_A 45 AKRVRISITARTKKEAEKFAAILIKVFAEL-GYNDINVTFDGDTVTVEGQ 93 (106)
T ss_dssp CSEEEEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEEecchhHHHHHHHHHHHHHHHh-CCcceeEEEcCCeEEEEeE
Confidence 34455665444444444433 333444 8889999999999999997
No 151
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.47 E-value=92 Score=25.98 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=25.1
Q ss_pred eeEEEEcCCCeEEEEEeecCHHHHHHHHHHh
Q 025287 35 QDQIFDEKTNTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 35 ~sV~VDlk~~kVTVeG~~vdpekLv~aL~kK 65 (255)
+..++|.+++++.|.|. ++..+|.+.|++-
T Consensus 70 t~g~id~~~~rlii~G~-~~~~~i~~~L~~y 99 (157)
T 2e9h_A 70 AQTQFDVKNDRYIVNGS-HEANKLQDMLDGF 99 (157)
T ss_dssp CCEEEETTTTEEEEEBC-CCHHHHHHHHHHH
T ss_pred CceeecCCCCEEEEEee-eCHHHHHHHHHHH
Confidence 34568889999999999 9999998888753
No 152
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.46 E-value=2.3e+02 Score=20.71 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=41.3
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHH
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLC 63 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~ 63 (255)
.+|-| +|.-+--...|+.++.....|.+|.+....+..-|+-. +.+...++|.
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~--~~~~A~~Ai~ 69 (101)
T 2cq1_A 16 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELA--TEEAAITMVN 69 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEES--SHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEEC--CHHHHHHHHH
Confidence 46778 99988888999999999999999998877788888753 4455555554
No 153
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A
Probab=22.46 E-value=1.4e+02 Score=25.64 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=33.8
Q ss_pred eccChhhHHHHHHHHhcCCCceeEEEEcCCCe-------------------EEEEEe--ecCHHHHHHHHHH
Q 025287 14 DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNT-------------------VRIKVV--CCSPEKIRDKLCC 64 (255)
Q Consensus 14 ~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~k-------------------VTVeG~--~vdpekLv~aL~k 64 (255)
.+.|==| ++..+.+|+||.++.+-..++. |.|+.+ .++-+.|++.+.+
T Consensus 8 agGCFWg---~E~~F~~~~GV~~t~vGYagG~~~nPtY~~Vc~g~tGHaEaV~V~yDp~~isy~~LL~~f~~ 76 (193)
T 3bqh_A 8 AGGCFWG---LEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFR 76 (193)
T ss_dssp EESCHHH---HHHHHHTSTTEEEEEEEEESCSSSSCCHHHHHHSCCCCEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred ecCCeee---hHHHHhcCCCEEEEEEeccCCcCCCCChheeecCCCCCeEEEEEEECCCcCCHHHHHHHHHH
Confidence 5555444 5666889999999999776654 555543 2677788888775
No 154
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=22.22 E-value=1.9e+02 Score=19.50 Aligned_cols=34 Identities=9% Similarity=0.259 Sum_probs=20.1
Q ss_pred EEEEE-eccChhhHH---HHHHHHhcCCC-ceeEEEEcC
Q 025287 9 MVLKV-DLQCSKCYK---KVKKVLCKFPQ-IQDQIFDEK 42 (255)
Q Consensus 9 ~vLKV-~M~C~gCak---KIkKAL~kI~G-V~sV~VDlk 42 (255)
++|.+ .-.|..|.. .+.++...+.+ |.-+.+|..
T Consensus 22 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~ 60 (106)
T 3die_A 22 QLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVD 60 (106)
T ss_dssp EEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETT
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECC
Confidence 34444 788999976 33455555554 555555543
No 155
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=22.17 E-value=2e+02 Score=21.61 Aligned_cols=54 Identities=7% Similarity=-0.060 Sum_probs=45.8
Q ss_pred EEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHh
Q 025287 10 VLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 10 vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kK 65 (255)
-|-| ||+-.-....++......--|.++.+.+..+-.-|+.. +.+....+|+..
T Consensus 9 wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~--~~~eA~~Ai~~L 63 (89)
T 2wbr_A 9 WLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYT--TREEANKAQMAL 63 (89)
T ss_dssp EEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEES--SHHHHHHHHHHH
T ss_pred eEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEEC--CHHHHHHHHHHh
Confidence 3457 99999999999999999999999999999999999964 666777777765
No 156
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=21.79 E-value=76 Score=23.33 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=36.4
Q ss_pred EEEE-eccChhhHHHHHHHHhcCC-CceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287 10 VLKV-DLQCSKCYKKVKKVLCKFP-QIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 10 vLKV-~M~C~gCakKIkKAL~kI~-GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk 68 (255)
+|-+ |+.|..=.-+++++|.++. . ++.+.|..+ ....++|.+.++..|++
T Consensus 3 ~lD~rGl~CP~Pvl~~kkal~~l~~~---------G~~L~V~~dd~~a~~dI~~~~~~~G~~ 55 (87)
T 3hz7_A 3 TIDALGQVCPIPVIRAKKALAELGEA---------GGVVTVLVDNDISRQNLQKMAEGMGYQ 55 (87)
T ss_dssp EEECTTCCTTHHHHHHHHHHHTTGGG---------CCEEEEEESSHHHHHHHHHHHHHHTCE
T ss_pred EEEcCCCCCCHHHHHHHHHHHhccCC---------CCEEEEEECCccHHHHHHHHHHHCCCE
Confidence 4667 9999999999999999983 2 234444443 13457888888888775
No 157
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=21.50 E-value=3.4e+02 Score=22.23 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=40.8
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCC-ceeEEEEcCC--Ce--EEEEEeecCHHHHHHHHHHhcCCccceeEE
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQ-IQDQIFDEKT--NT--VRIKVVCCSPEKIRDKLCCKGEGSIKSIAI 75 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~G-V~sV~VDlk~--~k--VTVeG~~vdpekLv~aL~kKggk~IK~IEI 75 (255)
..+|.| -.+-.|=-.+|.+.|+.-.- |.++.+.... +. +++... -+ +..++.|.+++++.+.-+.+
T Consensus 3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d-~~~leqI~kqL~Kl~dV~~V 74 (164)
T 2f1f_A 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GD-EKVLEQIEKQLHKLVDVLRV 74 (164)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SC-HHHHHHHHHHHHHSTTEEEE
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-cc-HHHHHHHHHHHcCCCCEEEE
Confidence 456666 55678888999999988754 7888875332 33 333332 22 55666777776665433333
No 158
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=21.49 E-value=71 Score=27.08 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=27.4
Q ss_pred EEEEEEec-cChhhHHHHHHHHhcCCCceeEEEE
Q 025287 8 TMVLKVDL-QCSKCYKKVKKVLCKFPQIQDQIFD 40 (255)
Q Consensus 8 t~vLKV~M-~C~gCakKIkKAL~kI~GV~sV~VD 40 (255)
-.+|-|.| -|..|+..|..+|....||..|.+-
T Consensus 84 g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~ 117 (190)
T 2nyt_A 84 NVTWYVSSSPCAACADRIIKTLSKTKNLRLLILV 117 (190)
T ss_pred CeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEE
Confidence 45667744 4999999999999999999988873
No 159
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.44 E-value=2.1e+02 Score=19.95 Aligned_cols=55 Identities=7% Similarity=-0.010 Sum_probs=41.1
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC------CeEEEEEeecCHHHHHHHHHHh
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT------NTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~------~kVTVeG~~vdpekLv~aL~kK 65 (255)
.+|.| +|.=.--...|+..++.+..|.+|.+-.+. +-.-|+.. +.+...++|...
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~--~~~~a~~A~~~l 77 (105)
T 1x5u_A 16 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFL--SEEDADYAIKIM 77 (105)
T ss_dssp TEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEES--SHHHHHHHHHHS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEEC--CHHHHHHHHHHh
Confidence 46777 888888889999999999999999885543 24556643 667777777753
No 160
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=21.16 E-value=2.1e+02 Score=19.62 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=31.0
Q ss_pred EEEEEEeccChhhH----HHHHHHHhcCCCceeEEEEcC--------CCeEEEEEeecCHHHHHHHH
Q 025287 8 TMVLKVDLQCSKCY----KKVKKVLCKFPQIQDQIFDEK--------TNTVRIKVVCCSPEKIRDKL 62 (255)
Q Consensus 8 t~vLKV~M~C~gCa----kKIkKAL~kI~GV~sV~VDlk--------~~kVTVeG~~vdpekLv~aL 62 (255)
++.|.|.-..-|+. .+..+.|...-|+ .+.|+.. .+.|+|.|. .+.+..++
T Consensus 4 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga-~I~i~~~~~~~~~~~~~~v~I~G~---~~~v~~A~ 66 (76)
T 1dtj_A 4 LVEMAVPENLVGAILGKGGKTLVEYQELTGA-RIQISKKGEFLPGTRNRRVTITGS---PAATQAAQ 66 (76)
T ss_dssp EEEEEEETTTHHHHHCSTTHHHHHHHHHHCC-EEEECCTTCCSTTCCEEEEEEEES---HHHHHHHH
T ss_pred EEEEEEChHHcceEECCCchHHHHHHHHhCC-EEEECcCCCCCCCCceeEEEEEeC---HHHHHHHH
Confidence 46777766665665 3445556666676 4666643 258999986 44444443
No 161
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=21.14 E-value=2e+02 Score=19.41 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=22.7
Q ss_pred EEEEE-eccChhhHHH---HHHHHhcCCCceeEEEEcCCC
Q 025287 9 MVLKV-DLQCSKCYKK---VKKVLCKFPQIQDQIFDEKTN 44 (255)
Q Consensus 9 ~vLKV-~M~C~gCakK---IkKAL~kI~GV~sV~VDlk~~ 44 (255)
++|.+ .-.|..|..- +.+....+.+|.-+.+|...+
T Consensus 23 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~ 62 (105)
T 3m9j_A 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDC 62 (105)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTC
T ss_pred EEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhh
Confidence 34444 8889999643 344445566777777776543
No 162
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=21.06 E-value=2e+02 Score=19.72 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=23.4
Q ss_pred EEEEE-eccChhhHH---HHHHHHhcCCCceeEEEEcCCC
Q 025287 9 MVLKV-DLQCSKCYK---KVKKVLCKFPQIQDQIFDEKTN 44 (255)
Q Consensus 9 ~vLKV-~M~C~gCak---KIkKAL~kI~GV~sV~VDlk~~ 44 (255)
+.|.. .-.|..|.. .+.++...+++|.-+.+|.+.+
T Consensus 21 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~ 60 (105)
T 4euy_A 21 VLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDM 60 (105)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCC
Confidence 44444 778999976 4455555667777777775543
No 163
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=21.06 E-value=2.5e+02 Score=20.62 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=44.4
Q ss_pred CCCCCceEEEEEE--eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcC--CccceeEEe
Q 025287 1 MGEKKVTTMVLKV--DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGE--GSIKSIAIL 76 (255)
Q Consensus 1 Ma~k~vtt~vLKV--~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKgg--k~IK~IEIV 76 (255)
|++.-...+.|.| ..+=-|=..-+.+.-.+| |++-..-|+.++ |.|....-+ +.++++|++.+- -.|.+|++-
T Consensus 1 ~~~~~~~~~~i~V~G~VQGVGFR~~v~~~A~~l-gL~G~VrN~~dG-Vei~~eG~~-~~f~~~l~~~~P~~A~V~~v~~~ 77 (91)
T 1gxu_A 1 MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQL-NLHGDVCNDGDG-VEVRLREDP-EVFLVQLYQHCPPLARIDSVERE 77 (91)
T ss_dssp ---CCEEEEEEEEEEECSSSSHHHHHHHHHHHH-TCCEEEEECSSS-EEEEESSCC-HHHHHHHHHTCCTTCEEEEEEEE
T ss_pred CCCChhcEEEEEEEEeeCCcCHHHHHHHHHHHc-CCeEEEEECCCc-EEEEEEECH-HHHHHHHhhCCCCCEEEEEEEEE
Confidence 5555333455666 445555555665555555 677777888999 777654223 889999987542 236666654
Q ss_pred C
Q 025287 77 E 77 (255)
Q Consensus 77 s 77 (255)
.
T Consensus 78 ~ 78 (91)
T 1gxu_A 78 P 78 (91)
T ss_dssp E
T ss_pred E
Confidence 3
No 164
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=21.05 E-value=2.2e+02 Score=19.92 Aligned_cols=56 Identities=5% Similarity=0.081 Sum_probs=40.4
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC------CeEEEEEeecCHHHHHHHHHHh
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT------NTVRIKVVCCSPEKIRDKLCCK 65 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~------~kVTVeG~~vdpekLv~aL~kK 65 (255)
..+|.| +|.-.--...|+..++.+..|.++.+-... +-.-|+. .+.+...++|...
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f--~~~~~a~~A~~~l 85 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEY--ETYKEAQAAMEGL 85 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEE--SCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEE--CCHHHHHHHHHHh
Confidence 356778 888888889999999999999999985442 2344443 2566666677653
No 165
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.02 E-value=2.1e+02 Score=19.71 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=40.3
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC---------CeEEEEEeecCHHHHHHHHHHhcC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKT---------NTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~---------~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
.+|.| +|.=+--...|+..++.+..|.++.+-.+. +..-|+. .+.+...++|...-+
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f--~~~~~a~~A~~~l~g 72 (98)
T 2cpf_A 6 SGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEY--KKPEQAQKALKQLQG 72 (98)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEE--SSHHHHHHHHHHSTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEE--CCHHHHHHHHHHhCC
Confidence 35667 787777789999999999999999986432 2344443 367777777775433
No 166
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.02 E-value=2.9e+02 Score=21.28 Aligned_cols=61 Identities=8% Similarity=0.055 Sum_probs=45.7
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCe-EEEEEeecCHHHHHHHHHHhcCCcc
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNT-VRIKVVCCSPEKIRDKLCCKGEGSI 70 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~k-VTVeG~~vdpekLv~aL~kKggk~I 70 (255)
++.|.| +|.-.--...|..+.+....|.+|.+..+.+. .-|+.. +.+...++|+..-|..|
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~--~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFE--SVLCAQKAKAALNGADI 87 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEES--SHHHHHHHHHHHTTCCC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEEC--CHHHHHHHHHHhCCCEe
Confidence 445667 89888888899999999999999998655663 666643 66777777776655544
No 167
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=20.67 E-value=2e+02 Score=19.26 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=20.9
Q ss_pred EEEEE-eccChhhHHH---HHHHHhcCCCceeEEEEcCC
Q 025287 9 MVLKV-DLQCSKCYKK---VKKVLCKFPQIQDQIFDEKT 43 (255)
Q Consensus 9 ~vLKV-~M~C~gCakK---IkKAL~kI~GV~sV~VDlk~ 43 (255)
++|.+ .-.|..|..- +++....+++|.-+.+|...
T Consensus 22 ~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~ 60 (104)
T 2vim_A 22 IVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQ 60 (104)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccC
Confidence 33444 7889999753 34444455667766666543
No 168
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=20.58 E-value=1.9e+02 Score=19.95 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=21.6
Q ss_pred EEEEE-eccChhhHHH---HHHHHhcCCCceeEEEEcCC
Q 025287 9 MVLKV-DLQCSKCYKK---VKKVLCKFPQIQDQIFDEKT 43 (255)
Q Consensus 9 ~vLKV-~M~C~gCakK---IkKAL~kI~GV~sV~VDlk~ 43 (255)
++|.+ .-.|..|..- +++....+.+|.-+.+|.+.
T Consensus 31 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~ 69 (118)
T 2vm1_A 31 VIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDE 69 (118)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEccc
Confidence 33444 7889999653 44444555677777776554
No 169
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=20.47 E-value=2.3e+02 Score=19.99 Aligned_cols=59 Identities=7% Similarity=0.129 Sum_probs=43.2
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcC------CCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287 8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEK------TNTVRIKVVCCSPEKIRDKLCCKGEG 68 (255)
Q Consensus 8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk------~~kVTVeG~~vdpekLv~aL~kKggk 68 (255)
..+|.| +|.=.--...|+..++.+..|.++.+-.. .+-.-|+.. +.+....+|...-+.
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~--~~~~A~~Ai~~l~g~ 91 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYE--THKQALAAKEALNGA 91 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEES--SHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEEC--CHHHHHHHHHHcCCC
Confidence 356778 88888888999999999999999988543 245666643 667777777754443
No 170
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=20.38 E-value=2.8e+02 Score=20.83 Aligned_cols=71 Identities=11% Similarity=0.027 Sum_probs=44.7
Q ss_pred ceEEEEEE--eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEE--EeecCHHHHHHHHHHhc-CCccceeEEeC
Q 025287 6 VTTMVLKV--DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIK--VVCCSPEKIRDKLCCKG-EGSIKSIAILE 77 (255)
Q Consensus 6 vtt~vLKV--~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVe--G~~vdpekLv~aL~kKg-gk~IK~IEIVs 77 (255)
|..+.|.| ..+--|=..-+.+.-.++ |++-..-|+.+++|.|. |..-+.+.++++|+..- .-.|.+|++-.
T Consensus 13 m~~~~i~V~G~VQGVGFR~~v~~~A~~l-gL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~gP~~A~V~~v~~~~ 88 (101)
T 2bjd_A 13 LKRMYARVYGLVQGVGFRKFVQIHAIRL-GIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQGPPAAEVEKVDYSF 88 (101)
T ss_dssp EEEEEEEEEEECSSSSHHHHHHHHHHHT-TCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHTTCSTTCEEEEEEEEE
T ss_pred hEEEEEEEEEeECCcCHHHHHHHHHHHc-CCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHhCCCccEEEEEEEEE
Confidence 44566777 556666677777666665 88888889999988775 44223456677776421 12255665543
No 171
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.01 E-value=2.2e+02 Score=19.44 Aligned_cols=55 Identities=2% Similarity=0.021 Sum_probs=40.0
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcC
Q 025287 9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGE 67 (255)
Q Consensus 9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKgg 67 (255)
.+|.| +|.=+--...|+..++.+..|.++.+... ...|+.. +.+...++|...-+
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~afV~f~--~~~~a~~A~~~l~g 65 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAFVHME--KEADAKAAIAQLNG 65 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--CEEEEES--CHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--EEEEEEC--CHHHHHHHHHHhCC
Confidence 45677 88878888999999999999999888643 5555542 56666777765433
No 172
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=20.01 E-value=1.5e+02 Score=21.56 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=21.6
Q ss_pred EEEEEe-----ccChhhHHHHHHHHhcCCCceeEEEEcC
Q 025287 9 MVLKVD-----LQCSKCYKKVKKVLCKFPQIQDQIFDEK 42 (255)
Q Consensus 9 ~vLKV~-----M~C~gCakKIkKAL~kI~GV~sV~VDlk 42 (255)
++|-.. -+|..|.+ +++.|..+ ||.-..+|+.
T Consensus 17 vvvy~~g~~~~~~Cp~C~~-ak~~L~~~-~i~~~~vdi~ 53 (109)
T 1wik_A 17 VMLFMKGNKQEAKCGFSKQ-ILEILNST-GVEYETFDIL 53 (109)
T ss_dssp EEEEESSTTTCCCSSTHHH-HHHHHHHT-CSCEEEEESS
T ss_pred EEEEEecCCCCCCCchHHH-HHHHHHHc-CCCeEEEECC
Confidence 455554 79999985 56777776 6766666654
Done!