Query 025288
Match_columns 255
No_of_seqs 116 out of 1123
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:20:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 4.1E-46 8.9E-51 317.3 28.9 245 4-254 64-330 (365)
2 COG0631 PTC1 Serine/threonine 100.0 3.8E-45 8.2E-50 300.5 23.5 239 3-254 6-252 (262)
3 PTZ00224 protein phosphatase 2 100.0 8E-43 1.7E-47 298.1 29.5 235 3-254 20-271 (381)
4 KOG0698 Serine/threonine prote 100.0 8.7E-40 1.9E-44 277.2 29.0 246 7-254 42-304 (330)
5 cd00143 PP2Cc Serine/threonine 100.0 1.2E-39 2.6E-44 268.2 28.0 241 6-253 2-254 (254)
6 PF00481 PP2C: Protein phospha 100.0 2E-41 4.3E-46 279.1 16.6 236 6-246 1-254 (254)
7 PRK14559 putative protein seri 100.0 1.1E-39 2.3E-44 293.3 26.4 240 4-254 374-635 (645)
8 KOG0697 Protein phosphatase 1B 100.0 3.9E-40 8.5E-45 259.5 20.6 245 4-254 21-291 (379)
9 smart00332 PP2Cc Serine/threon 100.0 5E-39 1.1E-43 264.9 28.1 240 3-251 4-255 (255)
10 KOG0699 Serine/threonine prote 100.0 7.2E-31 1.6E-35 214.2 19.4 157 95-255 327-504 (542)
11 KOG0700 Protein phosphatase 2C 100.0 1.8E-28 3.9E-33 204.3 18.9 221 19-241 84-378 (390)
12 KOG1379 Serine/threonine prote 100.0 1.9E-26 4E-31 186.2 22.3 205 18-253 89-330 (330)
13 KOG1323 Serine/threonine phosp 99.9 9.2E-22 2E-26 159.6 20.2 223 32-254 140-487 (493)
14 PF13672 PP2C_2: Protein phosp 99.9 8.3E-22 1.8E-26 158.1 14.1 176 10-222 3-193 (212)
15 smart00331 PP2C_SIG Sigma fact 99.9 1.6E-19 3.6E-24 142.7 20.8 184 5-238 4-192 (193)
16 KOG0618 Serine/threonine phosp 99.8 3.5E-20 7.5E-25 168.1 14.9 242 3-254 520-772 (1081)
17 TIGR02865 spore_II_E stage II 99.8 3.2E-19 6.9E-24 166.0 20.3 202 3-253 550-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.7 1.2E-15 2.6E-20 120.4 20.6 176 34-254 2-193 (193)
19 COG2208 RsbU Serine phosphatas 99.1 1.1E-08 2.4E-13 88.8 20.4 191 19-255 161-367 (367)
20 PRK10693 response regulator of 91.0 3.5 7.6E-05 34.8 10.5 104 20-130 150-259 (303)
21 PF09436 DUF2016: Domain of un 79.5 1.2 2.6E-05 28.8 1.4 22 193-214 23-44 (72)
22 COG2168 DsrH Uncharacterized c 69.4 3.4 7.5E-05 28.3 1.7 48 197-247 25-72 (96)
23 COG3700 AphA Acid phosphatase 56.2 25 0.00054 27.3 4.4 45 197-241 71-130 (237)
24 TIGR03735 PRTRC_A PRTRC system 35.5 22 0.00048 27.9 1.4 48 193-240 22-90 (192)
25 PF06972 DUF1296: Protein of u 32.0 83 0.0018 19.5 3.2 25 211-235 19-44 (60)
26 cd06409 PB1_MUG70 The MUG70 pr 29.8 73 0.0016 21.5 3.0 19 188-206 44-62 (86)
27 cd08325 CARD_CASP1-like Caspas 25.0 1.6E+02 0.0035 19.5 4.0 33 210-242 30-62 (83)
28 KOG1446 Histone H3 (Lys4) meth 23.2 1.1E+02 0.0025 25.8 3.6 28 184-211 186-213 (311)
29 cd08324 CARD_NOD1_CARD4 Caspas 23.1 97 0.0021 20.8 2.5 31 210-241 29-59 (85)
30 COG5518 Bacteriophage capsid p 22.6 55 0.0012 28.4 1.7 133 107-253 190-329 (492)
31 TIGR00067 glut_race glutamate 22.6 1.9E+02 0.004 23.7 4.8 50 39-88 1-57 (251)
32 cd08788 CARD_NOD2_2_CARD15 Cas 22.0 1.1E+02 0.0023 20.4 2.5 31 211-241 29-59 (81)
33 COG0796 MurI Glutamate racemas 21.2 1.7E+02 0.0037 24.4 4.2 53 38-90 7-66 (269)
34 PF05926 Phage_GPL: Phage head 21.1 1.8E+02 0.0038 21.6 3.9 22 201-222 1-22 (140)
35 PRK06246 fumarate hydratase; P 21.1 2.9E+02 0.0062 23.2 5.5 23 95-117 240-262 (280)
36 PRK00865 glutamate racemase; P 20.1 2.3E+02 0.005 23.3 4.9 51 38-88 7-64 (261)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=4.1e-46 Score=317.32 Aligned_cols=245 Identities=36% Similarity=0.570 Sum_probs=203.7
Q ss_pred ceeeeEEeecCCCCCCCCceeEeeeccc--------CCCceEEEEEEeCCCchHHHHHHHHHHHHHHHcCCCCCccHHHH
Q 025288 4 HITHGYHLVKGKSNHAMEDYLVSEFKQE--------KDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESA 75 (255)
Q Consensus 4 ~~~~~~~s~~G~~~~~neD~~~~~~~~~--------~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 75 (255)
.++++..|++|.|+ .|||++++..... ...+..+|+|||||||..+++++++.+.+.+.+...........
T Consensus 64 ~~~~~~~s~~G~R~-~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~a 142 (365)
T PLN03145 64 VVRSGAWADIGSRS-SMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKV 142 (365)
T ss_pred ceEEEEEccccCCC-CCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHH
Confidence 36889999999866 9999987632110 12346799999999999999999999999987754444456788
Q ss_pred HHHHHHHHHHHHHHhhc-ccCCCccceEEEEEEeCCEEEEEEeCCceEEEEeCCeeeeCCCCCCCc--hHHHHHHHcCCe
Q 025288 76 IRRAYHMTDTKILEQAF-VLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPS--KEKRLIESRGGF 152 (255)
Q Consensus 76 l~~~~~~~~~~l~~~~~-~~~~~~~tt~~~~~i~~~~~~~~~~GDsr~~~~r~~~~~~lt~dh~~~--~e~~~~~~~~g~ 152 (255)
|+++|..++..+.+... .....+|||++++++.++.++++|+||||+|+++++++.+||+||++. .|..|++..+|.
T Consensus 143 l~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~ 222 (365)
T PLN03145 143 VSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGY 222 (365)
T ss_pred HHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCc
Confidence 99999999999876532 223458999999999999999999999999999999999999999987 677889988887
Q ss_pred EecCCCCCCccCCccccccccCCccCcC-------CccCCCceEEEEccCCCeEEEEEeCCCccCCCHHHHHHHHH----
Q 025288 153 VSNIPGDVPRVDGQLAVARAFGDKSLKI-------HLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIK---- 221 (255)
Q Consensus 153 ~~~~~~~~~~~~~~~~lt~~lG~~~~~~-------~~~~~p~~~~~~l~~~~d~lll~SDGl~d~l~~~~i~~~~~---- 221 (255)
+.. .+..+...+||+||+..+|. .+..+|++..+++.+++.|||||||||||.++++++.+++.
T Consensus 223 v~~-----g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~ 297 (365)
T PLN03145 223 VYD-----GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQ 297 (365)
T ss_pred eec-----ceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHh
Confidence 752 24456678999999876642 35679999999999866788999999999999999866654
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCceEEEEEec
Q 025288 222 HVKDAKSAAKHLIEHAVSRKSKDDISCIVVKFH 254 (255)
Q Consensus 222 ~~~~~~~~a~~l~~~a~~~~~~Dn~Tvivv~i~ 254 (255)
...+|+++|+.|++.|+.+++.||+|+|||+++
T Consensus 298 ~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~ 330 (365)
T PLN03145 298 EHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQ 330 (365)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEee
Confidence 346899999999999999999999999999986
No 2
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-45 Score=300.55 Aligned_cols=239 Identities=28% Similarity=0.393 Sum_probs=202.3
Q ss_pred cceeeeEEeecCCCCCCCCceeEeeecccCCCceEEEEEEeCCCchHHHHHHHHHHHHHHHcCC----CCCcc--HHHHH
Q 025288 3 KHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEP----DFWTD--TESAI 76 (255)
Q Consensus 3 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~~----~~~~~--~~~~l 76 (255)
..+.++..+..|..+..|||++.+........ ..+++|||||||+++++.+++.+++.+.+.. ..... ..+.+
T Consensus 6 ~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l 84 (262)
T COG0631 6 LSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELL 84 (262)
T ss_pred ceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHH
Confidence 45778889999999888999999865333333 6799999999999999999988887776651 11111 57999
Q ss_pred HHHHHHHHHHHHHhhc--ccCCCccceEEEEEEeCCEEEEEEeCCceEEEEeCCeeeeCCCCCCCchHHHHHHHcCCeEe
Q 025288 77 RRAYHMTDTKILEQAF--VLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESRGGFVS 154 (255)
Q Consensus 77 ~~~~~~~~~~l~~~~~--~~~~~~~tt~~~~~i~~~~~~~~~~GDsr~~~~r~~~~~~lt~dh~~~~e~~~~~~~~g~~~ 154 (255)
.+.+..++..+..... ....+||||++++++.+++++++|+||||+|++|++.+.++|+||++..+. .. .+.+.
T Consensus 85 ~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~--~~--~~~~~ 160 (262)
T COG0631 85 KEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRL--EQ--RGIIT 160 (262)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHH--HH--hcCCC
Confidence 9999999999988763 334789999999999999999999999999999999999999999876432 22 23333
Q ss_pred cCCCCCCccCCccccccccCCccCcCCccCCCceEEEEccCCCeEEEEEeCCCccCCCHHHHHHHHHhcCCHHHHHHHHH
Q 025288 155 NIPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHVKDAKSAAKHLI 234 (255)
Q Consensus 155 ~~~~~~~~~~~~~~lt~~lG~~~~~~~~~~~p~~~~~~l~~~~d~lll~SDGl~d~l~~~~i~~~~~~~~~~~~~a~~l~ 234 (255)
+.++..++.++.+||++|+.. ...|++...++.+ ++++|||||||||.++++++.++++...+|+++++.|+
T Consensus 161 --~~~~~~~~~~~~ltralG~~~-----~~~p~~~~~~~~~-~d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~li 232 (262)
T COG0631 161 --PEEARSHPRRNALTRALGDFD-----LLEPDITELELEP-GDFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKLI 232 (262)
T ss_pred --HHHHHhCccchhhhhhcCCCc-----ccceeEEEEEcCC-CCEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHHH
Confidence 444556677889999999999 6899999999999 59999999999999999999999997789999999999
Q ss_pred HHHHhCCCCCCceEEEEEec
Q 025288 235 EHAVSRKSKDDISCIVVKFH 254 (255)
Q Consensus 235 ~~a~~~~~~Dn~Tvivv~i~ 254 (255)
+.|+.+++.||+|+|+|++.
T Consensus 233 ~~a~~~g~~DNiT~ilv~~~ 252 (262)
T COG0631 233 ELALEGGGPDNITVVLVRLN 252 (262)
T ss_pred HHHHhcCCCCceEEEEEEee
Confidence 99999999999999999975
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=8e-43 Score=298.09 Aligned_cols=235 Identities=33% Similarity=0.548 Sum_probs=193.3
Q ss_pred cceeeeEEeecCCCCCCCCceeEeeecccCCCceEEEEEEeCCCchHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Q 025288 3 KHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESAIRRAYHM 82 (255)
Q Consensus 3 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (255)
..+.+|..+++|.|+ .|||++++.. ..+..+|+|||||||+.+|.+++..+.+.+...... .....|++++..
T Consensus 20 ~~~~~g~~s~~G~R~-~nED~~~v~~----~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~--~~~~~l~~a~~~ 92 (381)
T PTZ00224 20 SIFRCASACVNGYRE-SMEDAHLLYL----TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEP--MTDERMEELCLE 92 (381)
T ss_pred ccEEEEEEeCCCCCC-CCCCeeEecc----CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHH
Confidence 468999999999987 8999987532 345579999999999999999999998777543222 124568999999
Q ss_pred HHHHHHHhhcccCCCccceEEEEEEe-CCEEEEEEeCCceEEEEeCCeeeeCCCCCCCc--hHHHHHHHcCCeEecCCCC
Q 025288 83 TDTKILEQAFVLGKGGSTAVTAILIN-GQKLVVANVGDSRAVISKNGVAKQLSVDHEPS--KEKRLIESRGGFVSNIPGD 159 (255)
Q Consensus 83 ~~~~l~~~~~~~~~~~~tt~~~~~i~-~~~~~~~~~GDsr~~~~r~~~~~~lt~dh~~~--~e~~~~~~~~g~~~~~~~~ 159 (255)
++..+..... .+|||++++++. +..++++|+||||+|++|+|++.+||+||++. .|..++...+|.+..
T Consensus 93 ~d~~i~~~~~----~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~---- 164 (381)
T PTZ00224 93 IDEEWMDSGR----EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVS---- 164 (381)
T ss_pred HHHHHHhccc----CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEecc----
Confidence 9999875432 245666666554 68999999999999999999999999999987 567788888887752
Q ss_pred CCccCCccccccccCCccCcC---------CccCCCceEEEEccCCCeEEEEEeCCCcc-CCCHHHHHHHHHh----cCC
Q 025288 160 VPRVDGQLAVARAFGDKSLKI---------HLSSEPDVKVEMITDDTEFIILASDGIWK-VMTNQEAVDCIKH----VKD 225 (255)
Q Consensus 160 ~~~~~~~~~lt~~lG~~~~~~---------~~~~~p~~~~~~l~~~~d~lll~SDGl~d-~l~~~~i~~~~~~----~~~ 225 (255)
.+..+.+.+||++|+..+|. .+..+|++..+++.+ +|+|||||||||| .++++++.+++.. ..+
T Consensus 165 -~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~-~D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~ 242 (381)
T PTZ00224 165 -NRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQS-NDFIILACDGVFEGNFSNEEVVAFVKEQLETCDD 242 (381)
T ss_pred -ccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCC-CCEEEEECCCcCcCccCHHHHHHHHHHHHhcCCC
Confidence 24456789999999976543 245789999999988 7999999999999 7999999999863 468
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEEEec
Q 025288 226 AKSAAKHLIEHAVSRKSKDDISCIVVKFH 254 (255)
Q Consensus 226 ~~~~a~~l~~~a~~~~~~Dn~Tvivv~i~ 254 (255)
++.+|+.|++.|+.+|+.||+|+|||++.
T Consensus 243 ~~~aA~~Lv~~A~~rGs~DNITvIvV~~~ 271 (381)
T PTZ00224 243 LAVVAGRVCDEAIRRGSKDNISCLIVQLK 271 (381)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEEee
Confidence 99999999999999999999999999985
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-40 Score=277.25 Aligned_cols=246 Identities=46% Similarity=0.686 Sum_probs=209.3
Q ss_pred eeEEeecCCCCCCCCceeEeeec----ccCCC-ceEEEEEEeCCCchHHHHHHHHHHHHHHHcCCCCCcc---HHHHHHH
Q 025288 7 HGYHLVKGKSNHAMEDYLVSEFK----QEKDN-ELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTD---TESAIRR 78 (255)
Q Consensus 7 ~~~~s~~G~~~~~neD~~~~~~~----~~~~~-~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~~---~~~~l~~ 78 (255)
.+..+.+|.+. .+||++..... ..... ...+|||||||||..+|.++...+...+.+....+.. ....+++
T Consensus 42 ~~~~~~~~~r~-~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~ 120 (330)
T KOG0698|consen 42 GSLLSIRGRRR-KMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRR 120 (330)
T ss_pred eEEEecCCCCC-ccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Confidence 34447777777 89999976433 12233 5789999999999999999999999999887655553 6899999
Q ss_pred HHH-HHHHHHHHhhcccCCCccceEEEEEEeCCEEEEEEeCCceEEEEeCC-eeeeCCCCCCCc--hHHHHHHHcCCeEe
Q 025288 79 AYH-MTDTKILEQAFVLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNG-VAKQLSVDHEPS--KEKRLIESRGGFVS 154 (255)
Q Consensus 79 ~~~-~~~~~l~~~~~~~~~~~~tt~~~~~i~~~~~~~~~~GDsr~~~~r~~-~~~~lt~dh~~~--~e~~~~~~~~g~~~ 154 (255)
+|. +++..+..+.......++|+++++++++.+++++|+||||+++++++ ...+||.||.+. .|..||+..+|.+.
T Consensus 121 ~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~ 200 (330)
T KOG0698|consen 121 AFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVS 200 (330)
T ss_pred HHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEE
Confidence 999 68888886522234566666666666677999999999999999865 899999999996 99999999999988
Q ss_pred cCCCCCCccCCccccccccCCccCc-CCccCCCceEEEEccCCCeEEEEEeCCCccCCCHHHHHHHHHh----cCCHHHH
Q 025288 155 NIPGDVPRVDGQLAVARAFGDKSLK-IHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKH----VKDAKSA 229 (255)
Q Consensus 155 ~~~~~~~~~~~~~~lt~~lG~~~~~-~~~~~~p~~~~~~l~~~~d~lll~SDGl~d~l~~~~i~~~~~~----~~~~~~~ 229 (255)
.... ..+.++..+++|++|+..+| .++..+|++....+...++||||+||||||.++++|.+++++. ..++..+
T Consensus 201 ~~~~-~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a 279 (330)
T KOG0698|consen 201 NWGG-VWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAA 279 (330)
T ss_pred EcCC-cceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHH
Confidence 4333 45788899999999999999 8899999999999998778999999999999999999999988 5699999
Q ss_pred HHHHHHHHHhCCCCCCceEEEEEec
Q 025288 230 AKHLIEHAVSRKSKDDISCIVVKFH 254 (255)
Q Consensus 230 a~~l~~~a~~~~~~Dn~Tvivv~i~ 254 (255)
+..|.+.+..+++.||+|+|||.|.
T Consensus 280 ~~~l~~~a~~~~s~DnitvvvV~l~ 304 (330)
T KOG0698|consen 280 AKLLATEALSRGSKDNITVVVVRLK 304 (330)
T ss_pred HHHHHHHHhhcCCCCCeEEEEEEec
Confidence 9999999999999999999999986
No 5
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=1.2e-39 Score=268.25 Aligned_cols=241 Identities=43% Similarity=0.644 Sum_probs=201.6
Q ss_pred eeeEEeecCCCCCCCCceeEeeecccCCCceEEEEEEeCCCchHHHHHHHHHHHHHHHcCCCC-----CccHHHHHHHHH
Q 025288 6 THGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDF-----WTDTESAIRRAY 80 (255)
Q Consensus 6 ~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~ 80 (255)
.++..+..|.|. .|||++++..... ..+..+++|||||||+..+..+++.+.+.+.+.... ...+...|+++|
T Consensus 2 ~~~~~~~~g~r~-~neD~~~~~~~~~-~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 79 (254)
T cd00143 2 SAGVSDKGGDRK-TNEDAVVIKPNLN-NEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAF 79 (254)
T ss_pred ceeeecCCCCCC-CCcceEEEeccCC-CCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 467777778777 9999998743110 026789999999999999999999998888765322 245678899999
Q ss_pred HHHHHHHHHhhcc--cCCCccceEEEEEEeCCEEEEEEeCCceEEEEeCCeeeeCCCCCCCc--hHHHHHHHcCCeEecC
Q 025288 81 HMTDTKILEQAFV--LGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPS--KEKRLIESRGGFVSNI 156 (255)
Q Consensus 81 ~~~~~~l~~~~~~--~~~~~~tt~~~~~i~~~~~~~~~~GDsr~~~~r~~~~~~lt~dh~~~--~e~~~~~~~~g~~~~~ 156 (255)
..+++.+...... ....++||++++++..+.++++|+||||+|++|++++.++|.+|++. .+..++...+|.+.
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~-- 157 (254)
T cd00143 80 LRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVS-- 157 (254)
T ss_pred HHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEE--
Confidence 9999999876532 34678999999999999999999999999999999999999999987 55667776655432
Q ss_pred CCCCCccCCccccccccCCccCcCCccCCCceEEEEccCCCeEEEEEeCCCccCCCHHHHHHHHHhcC---CHHHHHHHH
Q 025288 157 PGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHVK---DAKSAAKHL 233 (255)
Q Consensus 157 ~~~~~~~~~~~~lt~~lG~~~~~~~~~~~p~~~~~~l~~~~d~lll~SDGl~d~l~~~~i~~~~~~~~---~~~~~a~~l 233 (255)
....+.++.+|+++|...++.++..+|++..+++.+++|+|||||||||++++++++.+++.... +++++|+.|
T Consensus 158 ---~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l 234 (254)
T cd00143 158 ---NGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQEL 234 (254)
T ss_pred ---eCEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHH
Confidence 23566889999999999877666889999999993337999999999999999999999998866 899999999
Q ss_pred HHHHHhCCCCCCceEEEEEe
Q 025288 234 IEHAVSRKSKDDISCIVVKF 253 (255)
Q Consensus 234 ~~~a~~~~~~Dn~Tvivv~i 253 (255)
++.|.++++.||+|+|++++
T Consensus 235 ~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 235 VDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred HHHHHhCCCCCCEEEEEEeC
Confidence 99999999999999999975
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=2e-41 Score=279.07 Aligned_cols=236 Identities=39% Similarity=0.603 Sum_probs=192.5
Q ss_pred eeeEEeecCCCCCCCCceeEeeeccc---CCCceEEEEEEeCCCchHHHHHHHHHHHHHHHcCCCCCc--cHHHHHHHHH
Q 025288 6 THGYHLVKGKSNHAMEDYLVSEFKQE---KDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWT--DTESAIRRAY 80 (255)
Q Consensus 6 ~~~~~s~~G~~~~~neD~~~~~~~~~---~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 80 (255)
.||+.+..|.|. .|||.+++..... ...+..+|+|||||||..++.+++..+...+.+...... .+...|..+|
T Consensus 1 ~~~~~~~~g~r~-~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGVRK-EMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECTSS-SHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCCC-cccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 478999999999 9999998765432 456788999999999999999999999976665432221 5788899999
Q ss_pred HH-HHHHHHHhhcc-cCCCccceEEEEEEeCCEEEEEEeCCceEEEEeCCeee-eCCCCCCCc--hHHHHHHHcCCeEec
Q 025288 81 HM-TDTKILEQAFV-LGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAK-QLSVDHEPS--KEKRLIESRGGFVSN 155 (255)
Q Consensus 81 ~~-~~~~l~~~~~~-~~~~~~tt~~~~~i~~~~~~~~~~GDsr~~~~r~~~~~-~lt~dh~~~--~e~~~~~~~~g~~~~ 155 (255)
.. ++..+...... ....+|||++++++.+++++++|+||||+|+++++... +||.||++. .|+.|++..+|.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~ 159 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE 159 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc
Confidence 99 78887763221 34679999999999999999999999999999988887 999999988 799999999998874
Q ss_pred CCCCCCccCCccccccccCCccCcC----CccCCCceEEEEccCCCeEEEEEeCCCccCCCHHHHHHHHHhcCC----HH
Q 025288 156 IPGDVPRVDGQLAVARAFGDKSLKI----HLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHVKD----AK 227 (255)
Q Consensus 156 ~~~~~~~~~~~~~lt~~lG~~~~~~----~~~~~p~~~~~~l~~~~d~lll~SDGl~d~l~~~~i~~~~~~~~~----~~ 227 (255)
..+..+...+||+||+..+|+ ++.++|++..+++.+++.|||||||||||.++++++.+++....+ |+
T Consensus 160 ----~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~ 235 (254)
T PF00481_consen 160 ----NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQ 235 (254)
T ss_dssp ----TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHH
T ss_pred ----chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHH
Confidence 346667789999999999998 899999999999999655999999999999999999999987544 99
Q ss_pred HHHHHHHHHHHhCCCCCCc
Q 025288 228 SAAKHLIEHAVSRKSKDDI 246 (255)
Q Consensus 228 ~~a~~l~~~a~~~~~~Dn~ 246 (255)
.+|+.|++.|+++|+.||+
T Consensus 236 ~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 236 EAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHHHHTTHHSHE
T ss_pred HHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999996
No 7
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=1.1e-39 Score=293.34 Aligned_cols=240 Identities=22% Similarity=0.321 Sum_probs=183.0
Q ss_pred ceeeeEEeecCCCCCCCCceeEeeecc----cCC----CceEEEEEEeCCCchHHHHHHHHHHHHHHHc----CCCCCcc
Q 025288 4 HITHGYHLVKGKSNHAMEDYLVSEFKQ----EKD----NELGLFAIFDGHLGHDVANYLQTHLFDNILK----EPDFWTD 71 (255)
Q Consensus 4 ~~~~~~~s~~G~~~~~neD~~~~~~~~----~~~----~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~----~~~~~~~ 71 (255)
.++++..|++|.+++.|||++.+.... ... ....+|+|||||||+.+++.|++.+++.+.+ .......
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~ 453 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELP 453 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 478899999998666999988653210 001 1356999999999987666666555554432 2111112
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc----cCCCccceEEEEEEeCCEEEEEEeCCceEEEE-eCCeeeeCCCCCCCchHHHHH
Q 025288 72 TESAIRRAYHMTDTKILEQAFV----LGKGGSTAVTAILINGQKLVVANVGDSRAVIS-KNGVAKQLSVDHEPSKEKRLI 146 (255)
Q Consensus 72 ~~~~l~~~~~~~~~~l~~~~~~----~~~~~~tt~~~~~i~~~~~~~~~~GDsr~~~~-r~~~~~~lt~dh~~~~e~~~~ 146 (255)
....+++++..+|..+.+.... ...+||||++++++.+++++++|+||||+|++ |+|++.++|+||++.++ .+
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~--lv 531 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQR--EI 531 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHH--HH
Confidence 4677999999999999875422 23479999999999999999999999999998 57899999999987533 33
Q ss_pred HHcCCeEecCCCCCCccCCccccccccCCccCcCCccCCCceEEEEccCCCeEEEEEeCCCccC--CCH---HHHHHHHH
Q 025288 147 ESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKV--MTN---QEAVDCIK 221 (255)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~lt~~lG~~~~~~~~~~~p~~~~~~l~~~~d~lll~SDGl~d~--l~~---~~i~~~~~ 221 (255)
+ .| ++ +.++..+++++.+||++|+...+ ..+|++..+.+.+ ||++|||||||||+ ++. +++..++.
T Consensus 532 ~--~G-i~--~~~a~~~p~~~~LTrALG~~~~~---~l~Pdi~~~~L~~-gD~lLLCSDGL~D~~~ve~~~~~~l~~il~ 602 (645)
T PRK14559 532 Q--RG-VE--PQIAYARPDAYQLTQALGPRDNS---AIQPDIQFLEIEE-DTLLLLCSDGLSDNDLLETHWQTHLLPLLS 602 (645)
T ss_pred H--hC-CC--HHHHhcCcccceeeeccCCCCCC---cccceEEEEEcCC-CCEEEEECCCCCCCcccchHHHHHHHHHHh
Confidence 3 23 22 33344567889999999986533 3589999999988 79999999999994 554 34556666
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCceEEEEEec
Q 025288 222 HVKDAKSAAKHLIEHAVSRKSKDDISCIVVKFH 254 (255)
Q Consensus 222 ~~~~~~~~a~~l~~~a~~~~~~Dn~Tvivv~i~ 254 (255)
...+++++++.|++.|+.+++.||+|+|||+++
T Consensus 603 ~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~ 635 (645)
T PRK14559 603 SSANLDQGLNKLIDLANQYNGHDNITAILVRLK 635 (645)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEec
Confidence 667899999999999999999999999999986
No 8
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-40 Score=259.48 Aligned_cols=245 Identities=32% Similarity=0.530 Sum_probs=212.0
Q ss_pred ceeeeEEeecCCCCCCCCceeEeee-cccCCCceEEEEEEeCCCchHHHHHHHHHHHHHHHcCCCCC--------ccHHH
Q 025288 4 HITHGYHLVKGKSNHAMEDYLVSEF-KQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFW--------TDTES 74 (255)
Q Consensus 4 ~~~~~~~s~~G~~~~~neD~~~~~~-~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~--------~~~~~ 74 (255)
.+.||.+|++|+|- .+||++.... -...-.+|.+|+|+|||.|.++|.+++..+++.+....... ++.+.
T Consensus 21 glryg~SSMQGWR~-eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~~ 99 (379)
T KOG0697|consen 21 GLRYGVSSMQGWRV-EMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVEK 99 (379)
T ss_pred ceeeeeccccchhh-hhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHHh
Confidence 57899999999999 9999996432 22345789999999999999999999999998887653332 25677
Q ss_pred HHHHHHHHHHHHHHHhhccc--CCCccceEEEEEEeCCEEEEEEeCCceEEEEeCCeeeeCCCCCCCc--hHHHHHHHcC
Q 025288 75 AIRRAYHMTDTKILEQAFVL--GKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPS--KEKRLIESRG 150 (255)
Q Consensus 75 ~l~~~~~~~~~~l~~~~~~~--~~~~~tt~~~~~i~~~~~~~~~~GDsr~~~~r~~~~~~lt~dh~~~--~e~~~~~~~~ 150 (255)
-|+..|.+.++.++...... ...+|+|.+.+++....+|++|+||||+.++|+|....-|.||.+. .|++||++.+
T Consensus 100 GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAG 179 (379)
T KOG0697|consen 100 GIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAG 179 (379)
T ss_pred hHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCC
Confidence 88899999888887765332 2458999999999999999999999999999999999999999988 8899999999
Q ss_pred CeEecCCCCCCccCCccccccccCCccCcC---------CccCCCceEEEEccCCCeEEEEEeCCCccCCCHHHHHHHHH
Q 025288 151 GFVSNIPGDVPRVDGQLAVARAFGDKSLKI---------HLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIK 221 (255)
Q Consensus 151 g~~~~~~~~~~~~~~~~~lt~~lG~~~~~~---------~~~~~p~~~~~~l~~~~d~lll~SDGl~d~l~~~~i~~~~~ 221 (255)
|.+-. .+.++...++|++|+..||. -+.++|++..+.-..+++||||++||+||.++.+|+.++++
T Consensus 180 GSVMI-----qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~ 254 (379)
T KOG0697|consen 180 GSVMI-----QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVK 254 (379)
T ss_pred CeEEE-----EEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHH
Confidence 97531 26678899999999999987 48899999999988888999999999999999999999997
Q ss_pred h----cCCHHHHHHHHHHHHHhCCCCCCceEEEEEec
Q 025288 222 H----VKDAKSAAKHLIEHAVSRKSKDDISCIVVKFH 254 (255)
Q Consensus 222 ~----~~~~~~~a~~l~~~a~~~~~~Dn~Tvivv~i~ 254 (255)
. ..+.+++|..+++.++.+|++||+|+|+|-+.
T Consensus 255 sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp 291 (379)
T KOG0697|consen 255 SRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFP 291 (379)
T ss_pred hhheecccHHHHHHHHHHHHHhccCccCceEEEEecC
Confidence 6 57899999999999999999999999998764
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=5e-39 Score=264.91 Aligned_cols=240 Identities=44% Similarity=0.643 Sum_probs=202.6
Q ss_pred cceeeeEEeecCCCCCCCCceeEeeecccCCCceEEEEEEeCCCchHHHHHHHHHHHHHHHcCCCCC----ccHHHHHHH
Q 025288 3 KHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFW----TDTESAIRR 78 (255)
Q Consensus 3 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~----~~~~~~l~~ 78 (255)
..+.++..+..|.+. .|||++++... ...+..+++|||||||..+++++++.+.+.+.+..... ..+...|++
T Consensus 4 ~~~~~~~~~~~~~r~-~neD~~~~~~~--~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (255)
T smart00332 4 LGLRYGLSSMQGVRK-PMEDAHVITPD--LSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRK 80 (255)
T ss_pred CceeEEEecCCCCCC-CCcceEEEecc--CCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHH
Confidence 456778877667666 99999986431 12678899999999999999999999998887754333 247888999
Q ss_pred HHHHHHHHHHHhhccc--CCCccceEEEEEEeCCEEEEEEeCCceEEEEeCCeeeeCCCCCCCc--hHHHHHHHcCCeEe
Q 025288 79 AYHMTDTKILEQAFVL--GKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPS--KEKRLIESRGGFVS 154 (255)
Q Consensus 79 ~~~~~~~~l~~~~~~~--~~~~~tt~~~~~i~~~~~~~~~~GDsr~~~~r~~~~~~lt~dh~~~--~e~~~~~~~~g~~~ 154 (255)
++..++..+....... ...++||++++++..+.++++|+||||+|++|++++.++|.+|++. .+..++...++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~ 160 (255)
T smart00332 81 AFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVI 160 (255)
T ss_pred HHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEE
Confidence 9999999998765433 2578999999999999999999999999999999999999999986 55667776666554
Q ss_pred cCCCCCCccCCccccccccCCccCcCCccCCCceEEEEc-cCCCeEEEEEeCCCccCCCHHHHHHHHHhcC---CHHHHH
Q 025288 155 NIPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMI-TDDTEFIILASDGIWKVMTNQEAVDCIKHVK---DAKSAA 230 (255)
Q Consensus 155 ~~~~~~~~~~~~~~lt~~lG~~~~~~~~~~~p~~~~~~l-~~~~d~lll~SDGl~d~l~~~~i~~~~~~~~---~~~~~a 230 (255)
. .+++.++.+|+++|...+++.+..+|++...++ .+ +|+|||||||||++++++++.+++.... ++.+++
T Consensus 161 --~---~~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~-~d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~ 234 (255)
T smart00332 161 --N---GRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEK-DDFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAA 234 (255)
T ss_pred --C---CeECCeEecccccCCHhhcCCeEeeeEEEEEEecCC-CcEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 1 256678899999999988888888999999997 55 7999999999999999999999998765 699999
Q ss_pred HHHHHHHHhCCCCCCceEEEE
Q 025288 231 KHLIEHAVSRKSKDDISCIVV 251 (255)
Q Consensus 231 ~~l~~~a~~~~~~Dn~Tvivv 251 (255)
+.|++.|..++..||+|+||+
T Consensus 235 ~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 235 KRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred HHHHHHHHHcCCCCCeEEEEC
Confidence 999999999999999999985
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.98 E-value=7.2e-31 Score=214.19 Aligned_cols=157 Identities=38% Similarity=0.671 Sum_probs=140.9
Q ss_pred CCCccceEEEEEEeCCEEEEEEeCCceEEEEeCCeeeeCCCCCCCc--hHHHHHHHcCCeEecCCCCCCccCCccccccc
Q 025288 95 GKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPS--KEKRLIESRGGFVSNIPGDVPRVDGQLAVARA 172 (255)
Q Consensus 95 ~~~~~tt~~~~~i~~~~~~~~~~GDsr~~~~r~~~~~~lt~dh~~~--~e~~~~~~~~g~~~~~~~~~~~~~~~~~lt~~ 172 (255)
+..+|||.++|++.+.+++++|+||||+++.|+|+..-++.||.+- .|..||.+.+|+++- -++.++..+|+|+
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtl----DGRVNGGLNLSRA 402 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTL----DGRVNGGLNLSRA 402 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEee----cceecCccchhhh
Confidence 4677999999999999999999999999999999999999999988 667799999999873 2577899999999
Q ss_pred cCCccCcC---------CccCCCceEEEEccCCCeEEEEEeCCCccCCCHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 025288 173 FGDKSLKI---------HLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKH----VKDAKSAAKHLIEHAVS 239 (255)
Q Consensus 173 lG~~~~~~---------~~~~~p~~~~~~l~~~~d~lll~SDGl~d~l~~~~i~~~~~~----~~~~~~~a~~l~~~a~~ 239 (255)
+|+..||+ .|..-|+++...|.+++.|+|+++||+|++++.++++++++. +....++|+.|++.++.
T Consensus 403 ~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLA 482 (542)
T KOG0699|consen 403 FGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLA 482 (542)
T ss_pred hhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 99999988 377889999999999889999999999999999999988875 56788999999999997
Q ss_pred C------CCCCCceEEEEEecC
Q 025288 240 R------KSKDDISCIVVKFHR 255 (255)
Q Consensus 240 ~------~~~Dn~Tvivv~i~~ 255 (255)
. -+.||+|+|++.|+|
T Consensus 483 p~T~GDGTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 483 PSTDGDGTGCDNMTVIITTFKR 504 (542)
T ss_pred CCCCCCCcCCCcceEEEEEecc
Confidence 4 256999999999875
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-28 Score=204.26 Aligned_cols=221 Identities=38% Similarity=0.517 Sum_probs=169.8
Q ss_pred CCCceeEeeecccCCCceEEEEEEeCCCchHHHHHHHHHHHHHHHc------------CC-C------------------
Q 025288 19 AMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILK------------EP-D------------------ 67 (255)
Q Consensus 19 ~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~------------~~-~------------------ 67 (255)
..||.+-+... ...++.++||+|||||..++++++..+...+.. .. .
T Consensus 84 ~~edrv~~~~s--~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~ 161 (390)
T KOG0700|consen 84 AEEDRVSVAVS--EENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSS 161 (390)
T ss_pred cccCcceeeee--ccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccc
Confidence 55666654332 367899999999999999999999999887761 11 1
Q ss_pred --C-CccHHHHHHHHHHHHHHHHHHhhcc------cCCCccceEEEEEEeCCEEEEEEeCCceEEEEe---CC---eeee
Q 025288 68 --F-WTDTESAIRRAYHMTDTKILEQAFV------LGKGGSTAVTAILINGQKLVVANVGDSRAVISK---NG---VAKQ 132 (255)
Q Consensus 68 --~-~~~~~~~l~~~~~~~~~~l~~~~~~------~~~~~~tt~~~~~i~~~~~~~~~~GDsr~~~~r---~~---~~~~ 132 (255)
. .....+.|.++|.++.+.+...... .-..+|+++++.++.+..+|++|+||||+.+-+ ++ ...|
T Consensus 162 ~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~q 241 (390)
T KOG0700|consen 162 ADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQ 241 (390)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEe
Confidence 1 3456788999999999988755422 124677777888999999999999999998733 34 4689
Q ss_pred CCCCCCCc--hHHHHHHHcCCe-EecCCCCCCccCCccccccccCCccCcC---------------------CccCCCce
Q 025288 133 LSVDHEPS--KEKRLIESRGGF-VSNIPGDVPRVDGQLAVARAFGDKSLKI---------------------HLSSEPDV 188 (255)
Q Consensus 133 lt~dh~~~--~e~~~~~~~~g~-~~~~~~~~~~~~~~~~lt~~lG~~~~~~---------------------~~~~~p~~ 188 (255)
||.||+.. .|.+|++..-.. ....-....+..|...++|++|+..+|. .+..+|.+
T Consensus 242 LS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i 321 (390)
T KOG0700|consen 242 LSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSI 321 (390)
T ss_pred cChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceE
Confidence 99999987 777788765321 0100111257778899999999988876 47789999
Q ss_pred EEEEccCCCeEEEEEeCCCccCCCHHHHHHHHHhc----CCHHHHHHHHHHHHHhCC
Q 025288 189 KVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHV----KDAKSAAKHLIEHAVSRK 241 (255)
Q Consensus 189 ~~~~l~~~~d~lll~SDGl~d~l~~~~i~~~~~~~----~~~~~~a~~l~~~a~~~~ 241 (255)
+.+.|.+++.||||+|||||++++++|.+.++... -.-+.+|++|+++|+.+.
T Consensus 322 ~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 322 THHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred EEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 99999998889999999999999999999999773 234577889999888653
No 12
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=1.9e-26 Score=186.21 Aligned_cols=205 Identities=21% Similarity=0.245 Sum_probs=141.4
Q ss_pred CCCCceeEeeecccCCCceEEEEEEeCCCchHH----HHHHHHHHH----HHHHcCCCCCccHHHHHHHHHHHHHHHHHH
Q 025288 18 HAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDV----ANYLQTHLF----DNILKEPDFWTDTESAIRRAYHMTDTKILE 89 (255)
Q Consensus 18 ~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~----a~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 89 (255)
...||++++.. +....++|||||+|||+- +...++.++ +.+........+|...|.+++.+ +++
T Consensus 89 ~~GEDa~Fvss----~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~----l~~ 160 (330)
T KOG1379|consen 89 KGGEDAWFVSS----NPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAE----LKS 160 (330)
T ss_pred CCCCcceeecc----CcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHH----Hhh
Confidence 37899999732 456679999999999832 344444444 44443333444677777766655 443
Q ss_pred hhcccCCCccceEEEEEEe-CCEEEEEEeCCceEEEEeCCeeeeCCCCCCCchHHHHHHHcCCeEecCCCCCCccCCccc
Q 025288 90 QAFVLGKGGSTAVTAILIN-GQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESRGGFVSNIPGDVPRVDGQLA 168 (255)
Q Consensus 90 ~~~~~~~~~~tt~~~~~i~-~~~~~~~~~GDsr~~~~r~~~~~~lt~dh~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~ 168 (255)
+.. ...+++|++++++.. +++||++|+|||.+.++|+|++.+.|..+.+. +-. |.++...+...
T Consensus 161 ~~~-~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~-----------FN~--PyQLs~~p~~~- 225 (330)
T KOG1379|consen 161 QKV-PIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHY-----------FNT--PYQLSSPPEGY- 225 (330)
T ss_pred cCC-CCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheec-----------cCC--ceeeccCCccc-
Confidence 211 113555555555543 89999999999999999999999888877431 101 22221111111
Q ss_pred cccccCCccCcCCccCCCceEEEEccCCCeEEEEEeCCCccCCCHHHHHHHHHh-----cCCHHHHHHHHHHHHHh----
Q 025288 169 VARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKH-----VKDAKSAAKHLIEHAVS---- 239 (255)
Q Consensus 169 lt~~lG~~~~~~~~~~~p~~~~~~l~~~~d~lll~SDGl~d~l~~~~i~~~~~~-----~~~~~~~a~~l~~~a~~---- 239 (255)
..++++.+ -..+..++++++ ||.|||+||||||++.+++|..++.. ..+++..|+.+.+.|..
T Consensus 226 -~~~~~d~p------~~ad~~~~~v~~-GDvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d 297 (330)
T KOG1379|consen 226 -SSYISDVP------DSADVTSFDVQK-GDVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRD 297 (330)
T ss_pred -cccccCCc------cccceEEEeccC-CCEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccC
Confidence 33344433 456888999999 79999999999999999999999965 45799999999998884
Q ss_pred -------------------CCCCCCceEEEEEe
Q 025288 240 -------------------RKSKDDISCIVVKF 253 (255)
Q Consensus 240 -------------------~~~~Dn~Tvivv~i 253 (255)
.|++||||+||..+
T Consensus 298 ~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 298 PKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred cCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 25689999999764
No 13
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.90 E-value=9.2e-22 Score=159.59 Aligned_cols=223 Identities=30% Similarity=0.476 Sum_probs=158.0
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHHHHHHcC------------------------CC----------------CCcc
Q 025288 32 KDNELGLFAIFDGHLGHDVANYLQTHLFDNILKE------------------------PD----------------FWTD 71 (255)
Q Consensus 32 ~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~------------------------~~----------------~~~~ 71 (255)
...++.+|.+||||.|..+|-.+++.+-+-+... .. ...-
T Consensus 140 ~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~L 219 (493)
T KOG1323|consen 140 PRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHL 219 (493)
T ss_pred CCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHh
Confidence 4557789999999999888777766544322221 00 0011
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccceEEEEEEeCCEEEEEEeCCceEEEEeCCeeeeCCCCCCCchHHHHHHHc--
Q 025288 72 TESAIRRAYHMTDTKILEQAFVLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESR-- 149 (255)
Q Consensus 72 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~i~~~~~~~~~~GDsr~~~~r~~~~~~lt~dh~~~~e~~~~~~~-- 149 (255)
..-+|+.+|+..++.|.......+..+|||+.+++.--+++|++|+||||+.++|+++++.++++-++..|++|++..
T Consensus 220 ViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~Laf 299 (493)
T KOG1323|consen 220 VIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELAF 299 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHhh
Confidence 246788899988888877655555677777777777799999999999999999999999999999999888888764
Q ss_pred ------CCeEec--CCC----------------------------C------------CCccCCccccccccCCccCcC-
Q 025288 150 ------GGFVSN--IPG----------------------------D------------VPRVDGQLAVARAFGDKSLKI- 180 (255)
Q Consensus 150 ------~g~~~~--~~~----------------------------~------------~~~~~~~~~lt~~lG~~~~~~- 180 (255)
++..+. +|+ + ..+.-....++|.+|+...+.
T Consensus 300 ~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~ 379 (493)
T KOG1323|consen 300 RNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVV 379 (493)
T ss_pred cChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeee
Confidence 111111 010 0 001112346777888766543
Q ss_pred --------CccCCCceEEEEccC----CCeEEEEEeCCCccCCCHHHHHHHHHhc------CCH---HHHHHHHHHHHHh
Q 025288 181 --------HLSSEPDVKVEMITD----DTEFIILASDGIWKVMTNQEAVDCIKHV------KDA---KSAAKHLIEHAVS 239 (255)
Q Consensus 181 --------~~~~~p~~~~~~l~~----~~d~lll~SDGl~d~l~~~~i~~~~~~~------~~~---~~~a~~l~~~a~~ 239 (255)
+....|+++..++.. .+|.+||+|||+||.++.+++..+++.. .+| ..+|+.|+..|..
T Consensus 380 dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg 459 (493)
T KOG1323|consen 380 DSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARG 459 (493)
T ss_pred cCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcC
Confidence 566778888877762 2689999999999999999999888762 244 3566777776653
Q ss_pred -------------CCCCCCceEEEEEec
Q 025288 240 -------------RKSKDDISCIVVKFH 254 (255)
Q Consensus 240 -------------~~~~Dn~Tvivv~i~ 254 (255)
.++.|||||.||.+.
T Consensus 460 ~~k~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 460 QQKDRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred ccCCCceeccCCCcCCCCceEEEEEecc
Confidence 246799999999764
No 14
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.88 E-value=8.3e-22 Score=158.10 Aligned_cols=176 Identities=23% Similarity=0.312 Sum_probs=96.8
Q ss_pred EeecCCCCCCCCceeEeeecccCCCceEEEEEEeCCCchHH----HHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHH
Q 025288 10 HLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDV----ANYLQTHLFDNILKEPDFWTDTESAIRRAYHMTDT 85 (255)
Q Consensus 10 ~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~----a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (255)
.++.|.+. .|||++.+.. ..+..+++||||+|+... |..+++.+.+.+.+........ .....+..+.+
T Consensus 3 ~sh~~~~~-~nqD~~~~~~----~~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~--~~~~~~~~~~~ 75 (212)
T PF13672_consen 3 RSHRGRGA-PNQDAFGIRT----DDDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPS--SIEALIRAIKK 75 (212)
T ss_dssp ----TTSS-S--EEEEEE-----TCCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHH--HHHHHHHHHHH
T ss_pred ccccCCCC-CCCCCEEeee----CCCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHHH
Confidence 57788887 9999998533 344456699999997654 4445555555555443322211 02223333333
Q ss_pred HHHH---------hhcccCCCccceEEEEEEeCCEEEEEEeCCceEEE-EeCCeeeeCCCCCCCchHHHHHHHcCCeEec
Q 025288 86 KILE---------QAFVLGKGGSTAVTAILINGQKLVVANVGDSRAVI-SKNGVAKQLSVDHEPSKEKRLIESRGGFVSN 155 (255)
Q Consensus 86 ~l~~---------~~~~~~~~~~tt~~~~~i~~~~~~~~~~GDsr~~~-~r~~~~~~lt~dh~~~~e~~~~~~~~g~~~~ 155 (255)
.+.. ........++||++++++.++.++++|+|||++|+ .+++++..++.+|+. + ..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~--~---~~~------- 143 (212)
T PF13672_consen 76 EILSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSG--E---YPN------- 143 (212)
T ss_dssp HHHHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BH--H---HHH-------
T ss_pred HHHHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccc--h---hhh-------
Confidence 3321 12334467899999999999999999999999975 579999999999952 1 111
Q ss_pred CCCCCCccCCccccccccCCccCcCCccCCCceEEEEccCCCeEEEEEeCCCccCCCHHH-HHHHHHh
Q 025288 156 IPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQE-AVDCIKH 222 (255)
Q Consensus 156 ~~~~~~~~~~~~~lt~~lG~~~~~~~~~~~p~~~~~~l~~~~d~lll~SDGl~d~l~~~~-i~~~~~~ 222 (255)
. +..+..... ....++..+++.+ ++.|+|||||||+.+.+.+ +..++..
T Consensus 144 ------------~-~~~~~~~~~----~~~~~~~~~~~~~-~d~ilL~SDG~~~~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 144 ------------Q-TRSLTGDDP----EPDVQYGSIPLEE-GDVILLCSDGVWDNLRSYEDLEQFLKD 193 (212)
T ss_dssp ------------C-TTSCCHHCC----CTETEEEEEE--T-T-EEEEE-HHHHTTS-HHHHHHHH---
T ss_pred ------------h-hhccCcccc----ccCCeEEEEEcCC-CCEEEEECcCccccCCCHHHHHHHhhh
Confidence 1 222222210 2344677777777 7999999999999998655 6666644
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.86 E-value=1.6e-19 Score=142.66 Aligned_cols=184 Identities=15% Similarity=0.095 Sum_probs=135.5
Q ss_pred eeeeEEeecCCCCCCCCceeEeeecccCCCceEEEEEEeCCCchHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Q 025288 5 ITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESAIRRAYHMTD 84 (255)
Q Consensus 5 ~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 84 (255)
+.+++....+.. ...|.+.+.. .+++..+++|+||+|++..|..++..+...+........ .+.+.+..++
T Consensus 4 ~~~~~~~~p~~~--~~GD~~~~~~---~~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~----~~~~~l~~~n 74 (193)
T smart00331 4 GLIAQYYEDATQ--VGGDFYDVVK---LPEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGI----SLSQILERLN 74 (193)
T ss_pred eEEEEEEcchHh--cCccEEEEEE---eCCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHH
Confidence 445555555553 4889987543 245578999999999999999999888888765433222 2556677778
Q ss_pred HHHHHhhcccCCCccceEEEEEE--eCCEEEEEEeCCceEEEEe-CCeeeeCCCCCCCchHHHHHHHcCCeEecCCCCCC
Q 025288 85 TKILEQAFVLGKGGSTAVTAILI--NGQKLVVANVGDSRAVISK-NGVAKQLSVDHEPSKEKRLIESRGGFVSNIPGDVP 161 (255)
Q Consensus 85 ~~l~~~~~~~~~~~~tt~~~~~i--~~~~~~~~~~GDsr~~~~r-~~~~~~lt~dh~~~~e~~~~~~~~g~~~~~~~~~~ 161 (255)
+.+.... ...+++|++++++ .+++++++|+||+++|+++ ++...+.+.+.
T Consensus 75 ~~l~~~~---~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~------------------------ 127 (193)
T smart00331 75 RAIYENG---EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL------------------------ 127 (193)
T ss_pred HHHHhcC---CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC------------------------
Confidence 8776542 2457888888887 5889999999999999998 55544444432
Q ss_pred ccCCccccccccCCccCcCCccCCCceEEEEccCCCeEEEEEeCCCccCCCHHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 025288 162 RVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHV--KDAKSAAKHLIEHAV 238 (255)
Q Consensus 162 ~~~~~~~lt~~lG~~~~~~~~~~~p~~~~~~l~~~~d~lll~SDGl~d~l~~~~i~~~~~~~--~~~~~~a~~l~~~a~ 238 (255)
+..+|... ..+++...+++.+ ||+|+|+|||+++.+.++++.+++.+. .++++.++.+++++.
T Consensus 128 --------~~~lG~~~-----~~~~~~~~~~l~~-gd~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 128 --------GAPLGLEP-----DVEVDVRELTLEP-GDLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred --------CceeeeCC-----CCcceeEEEeeCC-CCEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 22344333 3457788889999 799999999999999999999999874 468999998888754
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=3.5e-20 Score=168.14 Aligned_cols=242 Identities=26% Similarity=0.370 Sum_probs=198.7
Q ss_pred cceeeeEEeecCCCCCCCCceeEeeecccCCCceEEEEEEeCCCchHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Q 025288 3 KHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESAIRRAYHM 82 (255)
Q Consensus 3 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (255)
.-|+||++...|.|++ +.-+.. ++..+-.+.-..||.+||-+..+..+.......+.+.++.....+....|+++|..
T Consensus 520 ~~~t~Gv~~~~gqrnk-~c~~~~-~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl~ 597 (1081)
T KOG0618|consen 520 FLWTYGVAGVSGQRNK-VCSRAV-WVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRNTFLR 597 (1081)
T ss_pred eheeeccchhcccccc-hhhhhh-hhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 4588999999999983 333332 23334456667999999999989888888888887777655555566779999999
Q ss_pred HHHHHHHhhcccCCCccceEEEEEEe--------CCEEEEEEeCCceEEEEeCCeeeeCCCCCCCc---hHHHHHHHcCC
Q 025288 83 TDTKILEQAFVLGKGGSTAVTAILIN--------GQKLVVANVGDSRAVISKNGVAKQLSVDHEPS---KEKRLIESRGG 151 (255)
Q Consensus 83 ~~~~l~~~~~~~~~~~~tt~~~~~i~--------~~~~~~~~~GDsr~~~~r~~~~~~lt~dh~~~---~e~~~~~~~~g 151 (255)
.++++-+.... -|.+++.+.|. ..++..|++|+|++.++++|+-.+.|+-..+. +|.+|+....|
T Consensus 598 ~~rklg~~g~~----lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g 673 (1081)
T KOG0618|consen 598 LNRKLGEEGQV----LGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKG 673 (1081)
T ss_pred Hhhhhhhhhcc----ccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcC
Confidence 99999665443 33344444443 35789999999999999999877766654322 88889999999
Q ss_pred eEecCCCCCCccCCccccccccCCccCcCCccCCCceEEEEccCCCeEEEEEeCCCccCCCHHHHHHHHHhcCCHHHHHH
Q 025288 152 FVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHVKDAKSAAK 231 (255)
Q Consensus 152 ~~~~~~~~~~~~~~~~~lt~~lG~~~~~~~~~~~p~~~~~~l~~~~d~lll~SDGl~d~l~~~~i~~~~~~~~~~~~~a~ 231 (255)
.++. .+...+....||++|.....+++.++|++....|.+.+++||+++-++|+.++-++..+.+++..+|-.+|+
T Consensus 674 ~i~e----d~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAk 749 (1081)
T KOG0618|consen 674 FITE----DNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAK 749 (1081)
T ss_pred eecC----CCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHH
Confidence 9883 246678889999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCceEEEEEec
Q 025288 232 HLIEHAVSRKSKDDISCIVVKFH 254 (255)
Q Consensus 232 ~l~~~a~~~~~~Dn~Tvivv~i~ 254 (255)
+|++.|+++|+.||++|+||++.
T Consensus 750 KL~d~AqSYgc~~nv~vlVv~l~ 772 (1081)
T KOG0618|consen 750 KLCDLAQSYGCAENVSVLVVRLN 772 (1081)
T ss_pred HHHHHHHhcccccCeeEEEEEee
Confidence 99999999999999999999985
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.84 E-value=3.2e-19 Score=165.99 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=145.5
Q ss_pred cceeeeEEeecCCCCCCCCceeEeeecccCCCceEEEEEEeCCCchHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Q 025288 3 KHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESAIRRAYHM 82 (255)
Q Consensus 3 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (255)
+++.+|+....-..+..+.|.+.+.. .+++..+++|+||+|++..|...+..+.+.+.+......+ .+.++..
T Consensus 550 ~~~~~g~a~~~k~g~~vsGD~y~~~~---l~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~ 622 (764)
T TIGR02865 550 YHVSTGVARAAKDGELVSGDSYSFGK---LSAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKT 622 (764)
T ss_pred eeehhhHHHhcCCCCcccCceEEEEE---ECCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHH
Confidence 34444554444344448999997532 2466789999999998888888777776665443222222 3567788
Q ss_pred HHHHHHHhhcccCCCccceEEEEEEe--CCEEEEEEeCCceEEEEeCCeeeeCCCCCCCchHHHHHHHcCCeEecCCCCC
Q 025288 83 TDTKILEQAFVLGKGGSTAVTAILIN--GQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESRGGFVSNIPGDV 160 (255)
Q Consensus 83 ~~~~l~~~~~~~~~~~~tt~~~~~i~--~~~~~~~~~GDsr~~~~r~~~~~~lt~dh~~~~e~~~~~~~~g~~~~~~~~~ 160 (255)
+|..+..... ..+.+|+.+++++ ++++.++++|+++.|+.|++.+.+++..+.+
T Consensus 623 lN~~L~~~~~---~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP--------------------- 678 (764)
T TIGR02865 623 VNSILSLRST---DEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP--------------------- 678 (764)
T ss_pred HHHHHHhCCC---CCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce---------------------
Confidence 8887754422 3467888888886 7899999999999999999988877655432
Q ss_pred CccCCccccccccCCccCcCCccCCCceEEEEccCCCeEEEEEeCCCccCCCHHH-----HHHHHHh--cCCHHHHHHHH
Q 025288 161 PRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQE-----AVDCIKH--VKDAKSAAKHL 233 (255)
Q Consensus 161 ~~~~~~~~lt~~lG~~~~~~~~~~~p~~~~~~l~~~~d~lll~SDGl~d~l~~~~-----i~~~~~~--~~~~~~~a~~l 233 (255)
+|-.. ..+++..+.++.+ ||+|+|+|||++|..++.+ +.+++.. ..+|++.++.|
T Consensus 679 ------------lGil~-----~~~~~~~~~~L~~-GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~I 740 (764)
T TIGR02865 679 ------------IGILD-----EVDVELVRKKLKN-GDLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYL 740 (764)
T ss_pred ------------eEecc-----CCccceEEEEeCC-CCEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 22111 3456777888999 7999999999999876533 6666654 46899999999
Q ss_pred HHHHHhCC---CCCCceEEEEEe
Q 025288 234 IEHAVSRK---SKDDISCIVVKF 253 (255)
Q Consensus 234 ~~~a~~~~---~~Dn~Tvivv~i 253 (255)
++++.... ..||+|++++++
T Consensus 741 l~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 741 LEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHHHHHhcCCCCCCCeEEEEEEe
Confidence 99998653 479999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.73 E-value=1.2e-15 Score=120.42 Aligned_cols=176 Identities=14% Similarity=0.153 Sum_probs=118.9
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhhcccCCCccceEEEEEEe--CCE
Q 025288 34 NELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESAIRRAYHMTDTKILEQAFVLGKGGSTAVTAILIN--GQK 111 (255)
Q Consensus 34 ~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~i~--~~~ 111 (255)
++.++++|+|+.|.+-.|...+..+...+........+ ..+.+..+|+.+...... ....+|++++.++ ++.
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~--~~~~~t~~~~~~d~~~~~ 75 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKG--DNRYATACYAIIDPETGT 75 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTT--TSTTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhh--ccccceEEEEEecccceE
Confidence 46779999999998777777766665555432211112 566777778887544332 1356667766665 689
Q ss_pred EEEEEeCCceEEEEeCC--eeeeCCCCCCCchHHHHHHHcCCeEecCCCCCCccCCccccccccCCccCcCCccCCCceE
Q 025288 112 LVVANVGDSRAVISKNG--VAKQLSVDHEPSKEKRLIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVK 189 (255)
Q Consensus 112 ~~~~~~GDsr~~~~r~~--~~~~lt~dh~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~lt~~lG~~~~~~~~~~~p~~~ 189 (255)
++++++|++.+++++++ ....+..... .+|... ..++...
T Consensus 76 l~~~~aG~~~~l~~~~~~~~~~~~~~~~~---------------------------------~lG~~~-----~~~~~~~ 117 (193)
T PF07228_consen 76 LTYANAGHPPPLLLRPGGREIEQLESEGP---------------------------------PLGIFE-----DIDYQEQ 117 (193)
T ss_dssp EEEEEESSSEEEEEETTCTEEEEETCSSB---------------------------------BCSSSC-----TTCEEEE
T ss_pred EEEeCCCCCCEEEEeccccceeecccCcc---------------------------------ceeeec-----cccccce
Confidence 99999999999999983 3333322221 134333 3456677
Q ss_pred EEEccCCCeEEEEEeCCCccCCCHH-------HHHHHHHh--cCCHHHHHHHHHHHHHhC---CCCCCceEEEEEec
Q 025288 190 VEMITDDTEFIILASDGIWKVMTNQ-------EAVDCIKH--VKDAKSAAKHLIEHAVSR---KSKDDISCIVVKFH 254 (255)
Q Consensus 190 ~~~l~~~~d~lll~SDGl~d~l~~~-------~i~~~~~~--~~~~~~~a~~l~~~a~~~---~~~Dn~Tvivv~i~ 254 (255)
++++.+ ||.|+|+||||+|....+ .+.+.+.. ..++++.++.+++++... ...||+|+++++++
T Consensus 118 ~~~l~~-gd~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 118 EIQLEP-GDRLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp EEE--T-TEEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred EEEecc-ccEEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 788888 799999999999998543 34566653 467999999999998873 46799999999874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=99.15 E-value=1.1e-08 Score=88.82 Aligned_cols=191 Identities=13% Similarity=0.053 Sum_probs=125.7
Q ss_pred CCCceeEeeecccCCCceEEEEEEeCCCchHHHHHHHHHHHHHHHcCCCC-CccHHHHHHHHHHHHHHHHHHhhcccCCC
Q 025288 19 AMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDF-WTDTESAIRRAYHMTDTKILEQAFVLGKG 97 (255)
Q Consensus 19 ~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 97 (255)
..-|.|-++.. +.....++|+|..|-+-.|...+......+...... ..++ ...+..+|+.+..... ..
T Consensus 161 vGGD~yd~~~~---~~~~~~i~I~DvsG~Gv~aal~m~~~~~~~~~~~~~~~~~p----~~~l~~~n~~~~~~~~---~~ 230 (367)
T COG2208 161 VGGDYYDFIQL---GEKRLRIGIGDVSGKGVPAALLMLMPKLALRLLLESGPLDP----ADVLETLNRVLKQNLE---ED 230 (367)
T ss_pred cCCceEEEEEE---CCcEEEEEEEeccCCCHHHHHHHHHHHHHHHHhhhcccCCH----HHHHHHHHHHHHhccc---CC
Confidence 46677765432 346789999999885544444433333333222211 2222 3355555666654333 23
Q ss_pred ccceEEEEEEe--CCEEEEEEeCCceEEEEeCCeeeeCCCCCCCchHHHHHHHcCCeEecCCCCCCccCCccccccccCC
Q 025288 98 GSTAVTAILIN--GQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESRGGFVSNIPGDVPRVDGQLAVARAFGD 175 (255)
Q Consensus 98 ~~tt~~~~~i~--~~~~~~~~~GDsr~~~~r~~~~~~lt~dh~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~lt~~lG~ 175 (255)
+-+|+...+++ .+.+.++++|.-..++++.++...+..-+ .....+|.
T Consensus 231 ~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~------------------------------~~g~piG~ 280 (367)
T COG2208 231 MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLT------------------------------ALGLPIGL 280 (367)
T ss_pred cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEcc------------------------------CCCceeee
Confidence 77888888876 78999999999999999865321111111 12223444
Q ss_pred ccCcCCccCCCceEEEEccCCCeEEEEEeCCCcc-------CCCHHHHHHHHHh--cCCHHHHHHHHHHHHHhCC----C
Q 025288 176 KSLKIHLSSEPDVKVEMITDDTEFIILASDGIWK-------VMTNQEAVDCIKH--VKDAKSAAKHLIEHAVSRK----S 242 (255)
Q Consensus 176 ~~~~~~~~~~p~~~~~~l~~~~d~lll~SDGl~d-------~l~~~~i~~~~~~--~~~~~~~a~~l~~~a~~~~----~ 242 (255)
.+ ...+.....++.+ ||.+++.|||+.+ .+..+...+++.. ..+|++.++.+.+...... -
T Consensus 281 ~~-----~~~~~~~~~~l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~~~~~ 354 (367)
T COG2208 281 LP-----DYQYEVASLQLEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQGDQIQ 354 (367)
T ss_pred cC-----CccchheeEEecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCccc
Confidence 44 5677888899999 8999999999999 5566777777763 4689999998888877643 3
Q ss_pred CCCceEEEEEecC
Q 025288 243 KDDISCIVVKFHR 255 (255)
Q Consensus 243 ~Dn~Tvivv~i~~ 255 (255)
.||+|++++++.+
T Consensus 355 ~DDiTll~lk~~~ 367 (367)
T COG2208 355 DDDITLLVLKVKK 367 (367)
T ss_pred cCceEEEEEEecC
Confidence 4889999999864
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=91.02 E-value=3.5 Score=34.81 Aligned_cols=104 Identities=12% Similarity=0.067 Sum_probs=58.6
Q ss_pred CCceeEeeecccCCCceEEEEEEe--CCCch-HHHHHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHhhcccC
Q 025288 20 MEDYLVSEFKQEKDNELGLFAIFD--GHLGH-DVANYLQTHLFDNILKEP-DFWTDTESAIRRAYHMTDTKILEQAFVLG 95 (255)
Q Consensus 20 neD~~~~~~~~~~~~~~~l~~V~D--G~Gg~-~~a~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 95 (255)
..|.+-+.. .+++...|-++| |||++ ..|......++..+.+.. ...........+.+..+|..+......
T Consensus 150 ~GD~~d~~~---l~~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~-- 224 (303)
T PRK10693 150 PGLVLDIAA---LSDNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLP-- 224 (303)
T ss_pred CccEEeeee---cCCCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCC--
Confidence 557665432 256677888889 77754 344444555454343321 000000012456777788887665221
Q ss_pred CCccceEEEEEEe--CCEEEEEEeCCceEEEEeCCee
Q 025288 96 KGGSTAVTAILIN--GQKLVVANVGDSRAVISKNGVA 130 (255)
Q Consensus 96 ~~~~tt~~~~~i~--~~~~~~~~~GDsr~~~~r~~~~ 130 (255)
.. -|+...+++ ++.+.+++.|....++..++.+
T Consensus 225 -~~-~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 225 -GQ-FPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred -ce-eeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 12 355555565 6789999999999885444444
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=79.53 E-value=1.2 Score=28.82 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=17.0
Q ss_pred ccCCCeEEEEEeCCCccCCCHH
Q 025288 193 ITDDTEFIILASDGIWKVMTNQ 214 (255)
Q Consensus 193 l~~~~d~lll~SDGl~d~l~~~ 214 (255)
+..+|.++++++||+|=.+...
T Consensus 23 l~~~G~Rllva~nGv~lEv~r~ 44 (72)
T PF09436_consen 23 LERPGHRLLVASNGVFLEVRRP 44 (72)
T ss_pred cccCCcEEEEecCcEEEEEech
Confidence 4445899999999999766543
No 22
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=69.38 E-value=3.4 Score=28.26 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=35.4
Q ss_pred CeEEEEEeCCCccCCCHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCce
Q 025288 197 TEFIILASDGIWKVMTNQEAVDCIKHVKDAKSAAKHLIEHAVSRKSKDDIS 247 (255)
Q Consensus 197 ~d~lll~SDGl~d~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~~~~Dn~T 247 (255)
+|-++|+.|||+-.+...+..+-++. +| ..+-.|-+....||-.+.++
T Consensus 25 ~D~vlL~qdGV~aAl~~~~~~~sl~~--~p-~~~~alkeDl~ARGl~~~~s 72 (96)
T COG2168 25 GDAVLLLQDGVYAALKGNRYLASLRE--SP-IKVYALKEDLLARGLTGQIS 72 (96)
T ss_pred cCeEEEEcccchhhhcCcHHHHHHhc--Cc-cceeeehhhHHhccchhhcC
Confidence 79999999999999998888777765 23 33455667777777655444
No 23
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=56.23 E-value=25 Score=27.29 Aligned_cols=45 Identities=22% Similarity=0.438 Sum_probs=33.5
Q ss_pred CeEEEEEeCCCcc-----------CCCHHHHHHHHHh----cCCHHHHHHHHHHHHHhCC
Q 025288 197 TEFIILASDGIWK-----------VMTNQEAVDCIKH----VKDAKSAAKHLIEHAVSRK 241 (255)
Q Consensus 197 ~d~lll~SDGl~d-----------~l~~~~i~~~~~~----~~~~~~~a~~l~~~a~~~~ 241 (255)
+|.+|..|.|+|. +|....+.+.+.+ ..-|.+.|+.|+++-..+|
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 5789999999985 4444455555544 2469999999999988876
No 24
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=35.54 E-value=22 Score=27.87 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=31.2
Q ss_pred ccCCCeEEEEEeCCCccCCCHHHHHHHHH--h-c------------------CCHHHHHHHHHHHHHhC
Q 025288 193 ITDDTEFIILASDGIWKVMTNQEAVDCIK--H-V------------------KDAKSAAKHLIEHAVSR 240 (255)
Q Consensus 193 l~~~~d~lll~SDGl~d~l~~~~i~~~~~--~-~------------------~~~~~~a~~l~~~a~~~ 240 (255)
++..|.++++++||+|=.+....+.-+.. . . .-|......+++.|.+.
T Consensus 22 l~~~g~r~~~a~~G~~lev~r~wl~~~~~~~~~~~~~~PYg~~~~~~~~~~g~Ip~~l~~~ii~hAr~~ 90 (192)
T TIGR03735 22 LEKPGHRFIVAADGVWREVRRPWLHAIQRVAPASPITVPYGAVEETLEFLCGPIPASLLEEFAEAARAA 90 (192)
T ss_pred cccCCcEEEEecCcEEEEEecHHHHHHHHhcccccccccceeeeeeEEEecCCCCHHHHHHHHHHHHhc
Confidence 44558999999999998776554433221 1 0 23466677778777764
No 25
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=32.04 E-value=83 Score=19.50 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHh-cCCHHHHHHHHHH
Q 025288 211 MTNQEAVDCIKH-VKDAKSAAKHLIE 235 (255)
Q Consensus 211 l~~~~i~~~~~~-~~~~~~~a~~l~~ 235 (255)
.+++||..++.. +-||.+++++|+.
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 578899888876 5699999999986
No 26
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=29.81 E-value=73 Score=21.46 Aligned_cols=19 Identities=16% Similarity=0.527 Sum_probs=14.3
Q ss_pred eEEEEccCCCeEEEEEeCC
Q 025288 188 VKVEMITDDTEFIILASDG 206 (255)
Q Consensus 188 ~~~~~l~~~~d~lll~SDG 206 (255)
+...-+..+||.++|+||.
T Consensus 44 ~~L~YlDDEgD~VllT~D~ 62 (86)
T cd06409 44 YALSYVDDEGDIVLITSDS 62 (86)
T ss_pred ccEEEEcCCCCEEEEeccc
Confidence 3344566778999999996
No 27
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=24.97 E-value=1.6e+02 Score=19.50 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 025288 210 VMTNQEAVDCIKHVKDAKSAAKHLIEHAVSRKS 242 (255)
Q Consensus 210 ~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~~~ 242 (255)
.++.+|...+-.........|+.|++...++|.
T Consensus 30 Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~KG~ 62 (83)
T cd08325 30 VLNEEEMEKIKEENNTIMDKARVLVDSVTEKGQ 62 (83)
T ss_pred CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHhH
Confidence 567788888877656689999999999887763
No 28
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=23.25 E-value=1.1e+02 Score=25.80 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=22.5
Q ss_pred CCCceEEEEccCCCeEEEEEeCCCccCC
Q 025288 184 SEPDVKVEMITDDTEFIILASDGIWKVM 211 (255)
Q Consensus 184 ~~p~~~~~~l~~~~d~lll~SDGl~d~l 211 (255)
..++...++..++|..|||+|++=|-++
T Consensus 186 ~~~ew~~l~FS~dGK~iLlsT~~s~~~~ 213 (311)
T KOG1446|consen 186 DEAEWTDLEFSPDGKSILLSTNASFIYL 213 (311)
T ss_pred CccceeeeEEcCCCCEEEEEeCCCcEEE
Confidence 3678888999999999999998765433
No 29
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=23.07 E-value=97 Score=20.76 Aligned_cols=31 Identities=6% Similarity=0.182 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 025288 210 VMTNQEAVDCIKHVKDAKSAAKHLIEHAVSRK 241 (255)
Q Consensus 210 ~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~~ 241 (255)
.++.++.. +++....+++.++.|.+.+...|
T Consensus 29 ~it~E~y~-~V~a~~T~qdkmRkLld~v~akG 59 (85)
T cd08324 29 YFSTEDAE-IVCACPTQPDKVRKILDLVQSKG 59 (85)
T ss_pred CccHHHHH-HHHhCCCCHHHHHHHHHHHHhcC
Confidence 34555554 45555788999999999877665
No 30
>COG5518 Bacteriophage capsid portal protein [General function prediction only]
Probab=22.61 E-value=55 Score=28.45 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=71.5
Q ss_pred EeCCEEEEEEeCCceEEEEeCCeeeeCCCCCCCchHHHHHHHcCCeEecCCCCCCccCCccccccccCCccCcCCccCCC
Q 025288 107 INGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSEP 186 (255)
Q Consensus 107 i~~~~~~~~~~GDsr~~~~r~~~~~~lt~dh~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~lt~~lG~~~~~~~~~~~p 186 (255)
|+...+|+..-||-|.|=++.|.-...+.-..+..| -+..+.|. +.++...--.++.+.+|..+. .
T Consensus 190 ID~k~v~FkeyGdpr~~d~~~G~yv~~~~le~~ane--~ih~kIgs-----~~YG~Prwig~ivslygarkA-----e-- 255 (492)
T COG5518 190 IDLKTVWFKEYGDPRPYDFTTGNYVSMFHLEEPANE--DIHQKIGS-----GAYGLPRWIGAIVSLYGARKA-----E-- 255 (492)
T ss_pred eccceEEEEecCCCcceeeccCccchhhhhhcchhh--hHHHhhcc-----cccCchHHHHHHHHHHhhhhH-----H--
Confidence 566789999999999999998844333322222111 11111110 000000011122222332221 0
Q ss_pred ceEEEEccC--CCeEEEEEeCCCccCCCHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CCCCceEEEEEe
Q 025288 187 DVKVEMITD--DTEFIILASDGIWKVMTNQEAVDCIKHVKDAKSAAKHLIEHAVSRK-----SKDDISCIVVKF 253 (255)
Q Consensus 187 ~~~~~~l~~--~~d~lll~SDGl~d~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~~-----~~Dn~Tvivv~i 253 (255)
+....-... .-.+++.++||..+--+-..+.+.+.....|+.+-+.|+=++.... +..|+|=|-|.|
T Consensus 256 eln~~YfknGrH~paai~~~~g~l~e~~y~~L~eyMk~~~g~eNa~~flm~e~~G~~~kn~hgd~~i~~vkV~I 329 (492)
T COG5518 256 ELNRMYFKNGRHAPAAIYMTDGALSEEDYNNLREYMKSAKGPENARNFLMYEPNGKKIKNAHGDGNISPVKVQI 329 (492)
T ss_pred HHHHHHHhcCccCceEEEecccccchHHHHHHHHHHhhcCCchhhhhheeeccCCeeccccCCCCCcCceeEEe
Confidence 011111111 1258999999999888888899999887788887777665554322 345677666655
No 31
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=22.59 E-value=1.9e+02 Score=23.75 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=29.7
Q ss_pred EEEEe-CCCchHHHHHHHHHHHHHHH----cC--CCCCccHHHHHHHHHHHHHHHHH
Q 025288 39 FAIFD-GHLGHDVANYLQTHLFDNIL----KE--PDFWTDTESAIRRAYHMTDTKIL 88 (255)
Q Consensus 39 ~~V~D-G~Gg~~~a~~~~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~l~ 88 (255)
.|||| |+||-.+...+.+.++++=. .. -.......+.+.+.+...-..+.
T Consensus 1 IgvfDSGiGGltv~~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~ 57 (251)
T TIGR00067 1 IGVFDSGVGGLSVLKEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVLELLTFLK 57 (251)
T ss_pred CEEEeCCccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 37999 89998888877777754311 11 12233345555555555555554
No 32
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=21.97 E-value=1.1e+02 Score=20.36 Aligned_cols=31 Identities=6% Similarity=0.144 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 025288 211 MTNQEAVDCIKHVKDAKSAAKHLIEHAVSRK 241 (255)
Q Consensus 211 l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~~ 241 (255)
++..|-..+......|..-|++|++.+..+|
T Consensus 29 is~~Ecd~Ir~p~~T~sqqARrLLD~V~~KG 59 (81)
T cd08788 29 FSSYDCDEIRLPIFTPSQQARRLLDLVKAKG 59 (81)
T ss_pred ccHhhcchhhcCCCChHHHHHHHHHHHHHHh
Confidence 4455555555545678888888888887765
No 33
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=21.17 E-value=1.7e+02 Score=24.38 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=30.4
Q ss_pred EEEEEe-CCCchHHHHHHHHHHHHHHHcC------CCCCccHHHHHHHHHHHHHHHHHHh
Q 025288 38 LFAIFD-GHLGHDVANYLQTHLFDNILKE------PDFWTDTESAIRRAYHMTDTKILEQ 90 (255)
Q Consensus 38 l~~V~D-G~Gg~~~a~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~l~~~ 90 (255)
-.+||| |+||-.+.+.+.+.++.+=.-. -...+..++.+++-...+-..+.+.
T Consensus 7 ~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~ 66 (269)
T COG0796 7 PIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLER 66 (269)
T ss_pred eEEEEECCCCcHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 478999 8999888876666665422111 1222334555555555555555543
No 34
>PF05926 Phage_GPL: Phage head completion protein (GPL); InterPro: IPR009225 This entry is represented by Bacteriophage P2, GpL. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage head completion protein (GpL) as well as related bacterial sequences. Members of this family allow the completion of filled heads by rendering newly packaged DNA in the heads resistant to DNase. The protein is thought to bind to DNA filled capsids [].; GO: 0019069 viral capsid assembly
Probab=21.10 E-value=1.8e+02 Score=21.63 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=18.6
Q ss_pred EEEeCCCccCCCHHHHHHHHHh
Q 025288 201 ILASDGIWKVMTNQEAVDCIKH 222 (255)
Q Consensus 201 ll~SDGl~d~l~~~~i~~~~~~ 222 (255)
+|.+||+|-.++..++.+.++-
T Consensus 1 tI~ndgFwPdI~l~~fr~~~Ri 22 (140)
T PF05926_consen 1 TITNDGFWPDIDLAEFREAMRI 22 (140)
T ss_pred CccCCCcCCCCCHHHHHHHhCC
Confidence 3678999999999999887764
No 35
>PRK06246 fumarate hydratase; Provisional
Probab=21.07 E-value=2.9e+02 Score=23.25 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=16.5
Q ss_pred CCCccceEEEEEEeCCEEEEEEe
Q 025288 95 GKGGSTAVTAILINGQKLVVANV 117 (255)
Q Consensus 95 ~~~~~tt~~~~~i~~~~~~~~~~ 117 (255)
+.++.||+..+.|...-.|++.+
T Consensus 240 GlGG~tTal~V~Ie~~p~H~Asl 262 (280)
T PRK06246 240 GLGGKTTALDVKIETYPCHIASL 262 (280)
T ss_pred ccCCceEEEEEEEeecCCcccCC
Confidence 46788999999987665555544
No 36
>PRK00865 glutamate racemase; Provisional
Probab=20.15 E-value=2.3e+02 Score=23.26 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=30.0
Q ss_pred EEEEEe-CCCchHHHHHHHHHHHHHHH----cC--CCCCccHHHHHHHHHHHHHHHHH
Q 025288 38 LFAIFD-GHLGHDVANYLQTHLFDNIL----KE--PDFWTDTESAIRRAYHMTDTKIL 88 (255)
Q Consensus 38 l~~V~D-G~Gg~~~a~~~~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~l~ 88 (255)
-.|||| |+||-.+...+.+.+++.=. .. -.......+.+.+.+.++-+.+.
T Consensus 7 ~IgvfDSGiGGLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~ 64 (261)
T PRK00865 7 PIGVFDSGVGGLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLL 64 (261)
T ss_pred eEEEEECCccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 489999 89998888877776654311 11 12233345555555555555554
Done!