Query 025289
Match_columns 255
No_of_seqs 121 out of 438
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:23:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bkd_A Transmembrane domain of 27.2 75 0.0026 17.3 3.0 19 173-191 8-26 (26)
2 1m0d_A Endonuclease, endodeoxy 23.1 18 0.00062 28.2 0.1 13 10-22 93-105 (138)
3 2kih_A Matrix protein 2; S31N, 19.6 1.4E+02 0.0049 18.1 3.5 22 170-191 9-30 (43)
4 3p8c_F ABL interactor 2; actin 18.4 21 0.00071 28.6 -0.5 9 16-24 31-39 (159)
5 2ljb_A M2 protein, BM2 protein 17.9 1.5E+02 0.005 17.3 3.2 22 170-191 9-30 (35)
6 3lbw_A M2 protein; proton chan 15.7 1.5E+02 0.0051 15.7 3.2 17 174-190 6-22 (23)
7 2qdr_A Uncharacterized protein 10.8 44 0.0015 29.1 -0.6 24 6-29 226-249 (303)
8 3rf3_C Invasin IPAA, 70 kDa an 9.7 91 0.0031 17.1 0.6 8 33-40 17-24 (29)
9 3msq_A Putative ubiquinone bio 9.6 61 0.0021 27.1 -0.1 42 175-216 85-137 (224)
10 2zuq_A Disulfide bond formatio 8.6 3.4E+02 0.011 21.4 4.0 17 68-84 80-96 (176)
No 1
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=27.21 E-value=75 Score=17.27 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 025289 173 MYVASIFLGSLCWLGDRLF 191 (255)
Q Consensus 173 ~~~~~f~la~~~w~~D~~~ 191 (255)
.+-.+=.+-+.+|.+||.|
T Consensus 8 aa~iiGilHLiLwIldrlf 26 (26)
T 3bkd_A 8 AASIMGILHLILWILDRLX 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 3445556777889999853
No 2
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Probab=23.10 E-value=18 Score=28.23 Aligned_cols=13 Identities=54% Similarity=0.662 Sum_probs=11.4
Q ss_pred ccccccchhhhhc
Q 025289 10 GPVTSTIECCEKN 22 (255)
Q Consensus 10 g~~tS~~dwCE~~ 22 (255)
|.+|+..+|||.+
T Consensus 93 ~s~ttya~Wc~k~ 105 (138)
T 1m0d_A 93 GSPTSYGEFCEKH 105 (138)
T ss_dssp TCSCBHHHHHHHH
T ss_pred cCCCcHHHHHHHc
Confidence 5689999999996
No 3
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=19.64 E-value=1.4e+02 Score=18.06 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 025289 170 LAKMYVASIFLGSLCWLGDRLF 191 (255)
Q Consensus 170 ~~~~~~~~f~la~~~w~~D~~~ 191 (255)
+...+-.+=.+-+.+|.+||.+
T Consensus 9 lv~aa~iiGIlHLiLwildRlf 30 (43)
T 2kih_A 9 LVVAANIIGILHLILWILDRLF 30 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556667888999999966
No 4
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=18.37 E-value=21 Score=28.62 Aligned_cols=9 Identities=44% Similarity=1.040 Sum_probs=6.7
Q ss_pred chhhhhcCc
Q 025289 16 IECCEKNYA 24 (255)
Q Consensus 16 ~dwCE~~y~ 24 (255)
.||||.||.
T Consensus 31 AdYCE~nY~ 39 (159)
T 3p8c_F 31 ADYCENNYI 39 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 578888873
No 5
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=17.89 E-value=1.5e+02 Score=17.34 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 025289 170 LAKMYVASIFLGSLCWLGDRLF 191 (255)
Q Consensus 170 ~~~~~~~~f~la~~~w~~D~~~ 191 (255)
+...+.++=.+-+.+|.+|+.+
T Consensus 9 lviaA~IigiLHlilWildrLf 30 (35)
T 2ljb_A 9 LVVAASIIGILHFIAWTIGHLN 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhH
Confidence 3444556667788899999966
No 6
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=15.68 E-value=1.5e+02 Score=15.67 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhhhh
Q 025289 174 YVASIFLGSLCWLGDRL 190 (255)
Q Consensus 174 ~~~~f~la~~~w~~D~~ 190 (255)
+-.+=.+-+.+|.+||.
T Consensus 6 a~iigIlHLiLwIlDrL 22 (23)
T 3lbw_A 6 ASIIAILHLILWILDRL 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34445566778888873
No 7
>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}
Probab=10.78 E-value=44 Score=29.13 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.2
Q ss_pred CCccccccccchhhhhcCcccccc
Q 025289 6 SSFWGPVTSTIECCEKNYAYSSYI 29 (255)
Q Consensus 6 ~g~Wg~~tS~~dwCE~~y~~s~yi 29 (255)
+|++......-|||||.|..+++.
T Consensus 226 Pg~dt~~v~iHdy~EEvY~LeG~~ 249 (303)
T 2qdr_A 226 PHFDNKYQMIQPYNEEGYCLTGYC 249 (303)
T ss_dssp SSEECCSEEEECSCEEEEEEEEEE
T ss_pred CCCCCCCceeeccceeEEEEeeec
Confidence 678888888999999999998876
No 8
>3rf3_C Invasin IPAA, 70 kDa antigen; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Shigella flexneri}
Probab=9.68 E-value=91 Score=17.06 Aligned_cols=8 Identities=50% Similarity=0.567 Sum_probs=6.2
Q ss_pred hhhhhhHH
Q 025289 33 YNTLSNIP 40 (255)
Q Consensus 33 ~NtlSNl~ 40 (255)
-|.+||+.
T Consensus 17 tnslsnli 24 (29)
T 3rf3_C 17 TNSLSNLI 24 (29)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 48888875
No 9
>3msq_A Putative ubiquinone biosynthesis protein; COQ4 superfamily, structural genomics, joint center for STRU genomics, JCSG; 2.85A {Nostoc punctiforme}
Probab=9.61 E-value=61 Score=27.09 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcC-CCC----------CcccchHHHHHHHhHH
Q 025289 175 VASIFLGSLCWLGDRLFCEEVSG-WPV----------NPQGHALWHVFMGFNS 216 (255)
Q Consensus 175 ~~~f~la~~~w~~D~~~C~~l~~-~~~----------~~~~H~~WHiltal~~ 216 (255)
-+++.-++.-|.-++.+=...+. -.+ .-+.|=+||++||.+.
T Consensus 85 ~gTlG~~Y~~fl~~~g~spd~~~~v~~~~d~ayv~~R~re~HD~~HvLtG~~t 137 (224)
T 3msq_A 85 EGTLGHVYAREMKARGFDPYFYKKVPVVDDISYLKMLWRSTHDIYHVVAGFDT 137 (224)
T ss_dssp TTBHHHHHHHHHHHC-----CCCCCCCCSHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCChHHHHHHHHHHcCCCCCccCCCCCCcHHHHHHHHHhcchhhhhhccCCCC
Confidence 45666777777666644322211 000 1368999999999874
No 10
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*
Probab=8.57 E-value=3.4e+02 Score=21.37 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=11.5
Q ss_pred HHHHhhhhhhhhccccc
Q 025289 68 NMILAMGSMLYHATLQR 84 (255)
Q Consensus 68 l~~vGiGS~~FH~tl~~ 84 (255)
.++.|++-+.+|.-++.
T Consensus 80 ~a~~G~~iA~~H~~lq~ 96 (176)
T 2zuq_A 80 SAFRGVQLTYEHTMLQL 96 (176)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56667777777776654
Done!