BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025292
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 160 bits (405), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 118/199 (59%), Gaps = 12/199 (6%)
Query: 18 MSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTS---IGREERYNLWFDPSDDF 74
+SN + HDEID EFLG I GK + +QTN++ GS IGRE R +LWFDP+ D+
Sbjct: 82 LSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFDPTQDY 141
Query: 75 HQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRV 134
H Y+I WT S+IIF++D +PIR + R + FP +PM +Y ++WD S WAT GKY+
Sbjct: 142 HNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPLRPMWVYGSVWDASSWATENGKYKA 199
Query: 135 NYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKH 194
+Y+Y P+V ++ DF L C+ + +S C+ + VS +S Q ME ++ +
Sbjct: 200 DYRYQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEWVQKNY 252
Query: 195 MTYSYCYDQIRYKVPPFEC 213
M Y+YC D R EC
Sbjct: 253 MVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 118/199 (59%), Gaps = 12/199 (6%)
Query: 18 MSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTS---IGREERYNLWFDPSDDF 74
+SN + HDEID EFLG I GK + +QTN++ GS IGRE R +LWFDP+ D+
Sbjct: 85 LSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFDPTQDY 144
Query: 75 HQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRV 134
H Y+I WT S+IIF++D +PIR + R + FP +P+ +Y ++WD S WAT GKY+
Sbjct: 145 HNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPLRPLWVYGSVWDASSWATENGKYKA 202
Query: 135 NYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKH 194
+Y+Y P+V ++ DF L C+ + +S C+ + VS +S Q ME ++ +
Sbjct: 203 DYRYQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEWVQKNY 255
Query: 195 MTYSYCYDQIRYKVPPFEC 213
M Y+YC D R EC
Sbjct: 256 MVYNYCDDPTRDHTLTPEC 274
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 116/196 (59%), Gaps = 11/196 (5%)
Query: 18 MSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQY 77
+SN + HDEID EFLG I GK + +QTN++ GS RE R +LWFDP+ D+H Y
Sbjct: 106 LSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGD--REMRIHLWFDPTQDYHNY 163
Query: 78 SILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYK 137
+I WT S+IIF++D +PIR + R + FP +P+ +Y ++WD S WAT GKY+ +Y+
Sbjct: 164 AIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPLRPLWVYGSVWDASSWATENGKYKADYR 221
Query: 138 YAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTY 197
Y P+V ++ DF L C+ + +S C+ + VS +S Q ME ++ +M Y
Sbjct: 222 YQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEWVQKNYMVY 274
Query: 198 SYCYDQIRYKVPPFEC 213
+YC D R EC
Sbjct: 275 NYCDDPTRDHTLTPEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 116/196 (59%), Gaps = 11/196 (5%)
Query: 18 MSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQY 77
+SN + HDEID EFLG I GK + +QTN++ GS RE R +LWFDP+ D+H Y
Sbjct: 83 LSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGD--REMRIHLWFDPTQDYHNY 140
Query: 78 SILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYK 137
+I WT S+IIF++D +PIR + R + FP +P+ +Y ++WD S WAT GKY+ +Y+
Sbjct: 141 AIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPLRPLWVYGSVWDASSWATENGKYKADYR 198
Query: 138 YAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTY 197
Y P+V ++ DF L C+ + +S C+ + VS +S Q ME ++ +M Y
Sbjct: 199 YQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEWVQKNYMVY 251
Query: 198 SYCYDQIRYKVPPFEC 213
+YC D R EC
Sbjct: 252 NYCDDPTRDHTLTPEC 267
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 107/190 (56%), Gaps = 10/190 (5%)
Query: 28 HDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQII 87
HDEIDFEFLGN G+ + +QTN++ G RE+R LWFDP+ +FH YS+LW I+
Sbjct: 89 HDEIDFEFLGNRTGQPYILQTNVFTGGKGD--REQRIYLWFDPTKEFHYYSVLWNMYMIV 146
Query: 88 FYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFS 146
F +D +PIR FK +G FP +PM +Y+++W+ DWAT GG + ++ AP++ +
Sbjct: 147 FLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYR 206
Query: 147 DFVLHGCSFDPIEQTSSKCDITESSK---VSIPTGVSPSQRIKMENFRRKHMTYSYCYDQ 203
F + GC +K T+ ++ + Q ++ R+K+ Y+YC D+
Sbjct: 207 SFHIDGCE----ASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDR 262
Query: 204 IRYKVPPFEC 213
RY P EC
Sbjct: 263 SRYPSMPPEC 272
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 29 DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREER-YNLWFDPSDDFHQYSILWTDSQII 87
DEID EFLG K +Q N Y NG +G E+ NL FD ++ +H Y+ W + I
Sbjct: 91 DEIDIEFLGKDTTK---VQFNYYTNG---VGNHEKIVNLGFDAANSYHTYAFDWQPNSIK 144
Query: 88 FYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS 123
+Y+DG + K TA+ P P +Y ++W G+
Sbjct: 145 WYVDG----QLKHTATT--QIPQTPGKIYMSLWAGA 174
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 29 DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIF 88
DEID EFLG K +Q N Y NG G E+ +L FD S FH Y+ W I +
Sbjct: 21 DEIDIEFLGKDTTK---VQFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKW 75
Query: 89 YIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---DWATNGGKYR-VNYKYAPY-VT 143
Y+DG+ K TA+ + P+ P + +W+G+ DW G Y N YA Y
Sbjct: 76 YVDGV----LKHTATA--NIPSTPGKIMMNLWNGTGVDDWL---GSYNGANPLYAEYDWV 126
Query: 144 EFSDFVLHGCSFDPIEQTSS 163
+++ G F+P +S
Sbjct: 127 KYTSNQTGGSFFEPFNSYNS 146
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 29 DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIF 88
DEID EFLG K +Q N Y NG G E+ +L FD S FH Y+ W I +
Sbjct: 46 DEIDIEFLGKDTTK---VQFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKW 100
Query: 89 YIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---DWATNGGKYR-VNYKYAPY-VT 143
Y+DG+ K TA+ + P+ P + +W+G+ DW G Y N YA Y
Sbjct: 101 YVDGV----LKHTATA--NIPSTPGKIMMNLWNGTGVDDWL---GSYNGANPLYAEYDWV 151
Query: 144 EFSDFVLHGCSFDPIEQTSS 163
+++ G F+P +S
Sbjct: 152 KYTSNQTGGSFFEPFNSYNS 171
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 29 DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIF 88
DEID EFLG K +Q N Y NG G E+ +L FD S FH Y+ W I +
Sbjct: 46 DEIDIEFLGKDTTK---VQFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKW 100
Query: 89 YIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---DW--ATNGGK-YRVNYKYAPYV 142
Y+DG+ K TA+ + P+ P + +W+G+ DW + NG Y + Y
Sbjct: 101 YVDGV----LKHTATA--NIPSTPGKIMMNLWNGTGVDDWLGSYNGANPLYAEYDWVKYT 154
Query: 143 TEFSDFVLHGCSFDP 157
+ S F F+P
Sbjct: 155 SNGSVFWEPKSYFNP 169
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 29 DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIF 88
DEID EFLG K +Q N Y NG G E+ +L FD S FH Y+ W I +
Sbjct: 104 DEIDIEFLGKDTTK---VQFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKW 158
Query: 89 YIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---DW 125
Y+DG+ K TA+ + P+ P + +W+G+ DW
Sbjct: 159 YVDGV----LKHTATA--NIPSTPGKIMMNLWNGTGVDDW 192
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 29 DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIF 88
DEID EFLG K +Q N Y NG G E+ +L FD S FH Y+ W I +
Sbjct: 102 DEIDIEFLGKDTTK---VQFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKW 156
Query: 89 YIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---DW 125
Y+DG+ K TA+ + P+ P + +W+G+ DW
Sbjct: 157 YVDGV----LKHTATA--NIPSTPGKIMMNLWNGTGVDDW 190
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 29 DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIF 88
DEID EFLG K +Q N Y NG G E+ +L FD S FH Y+ W I +
Sbjct: 46 DEIDIEFLGKDTTK---VQFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKW 100
Query: 89 YIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---DW 125
Y+DG+ K TA+ + P+ P + +W+G+ DW
Sbjct: 101 YVDGV----LKHTATA--NIPSTPGKIMMNLWNGTGVDDW 134
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 29 DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREER-YNLWFDPSDDFHQYSILWTDSQII 87
DEID EFLG K +Q N Y NG +G E+ NL FD ++ +H Y+ W + I
Sbjct: 104 DEIDIEFLGKDTTK---VQFNYYTNG---VGNHEKIVNLGFDAANSYHTYAFDWQPNSIK 157
Query: 88 FYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS 123
+Y+DG + K TA+ P P + +W+G+
Sbjct: 158 WYVDG----QLKHTATT--QIPQTPGKIMMNLWNGA 187
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 29 DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIF 88
D+ID +FLG K +Q N Y NG G E+ +L FD S FH Y+ W I +
Sbjct: 104 DQIDIQFLGKDTTK---VQFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKW 158
Query: 89 YIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---DW 125
Y+DG+ K TA+ + P+ P + +W+G+ DW
Sbjct: 159 YVDGV----LKHTATA--NIPSTPGKIMMNLWNGTGVDDW 192
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 29 DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIF 88
DEID EFLG K +Q N Y NG+ + E+ +L FD ++ +H Y+ W + I +
Sbjct: 128 DEIDIEFLGKDTTK---VQFNYYTNGAGN--HEKIVDLGFDAANAYHTYAFDWQPNSIKW 182
Query: 89 YIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS 123
Y+DG + K TA+ P P + +W+G+
Sbjct: 183 YVDG----QLKHTAT--NQIPTTPGKIMMNLWNGT 211
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 29 DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIF 88
DEID EFLG K +Q N Y N + + E Y+L FD S+DFH Y+ W + I +
Sbjct: 124 DEIDIEFLGKDTTK---VQFNYYTNSAGN--HEYIYDLRFDASEDFHIYAFNWQPNYIAW 178
Query: 89 YIDGIPIREFKRTASMGGDFPAKPMSLYATIWDG 122
+DG E R D P P + IW G
Sbjct: 179 LVDG---EEVYRAYD---DIPVHPGKIMLNIWPG 206
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 59 GREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYAT 118
G E+ +L FD S FH Y+ W I +Y+DG+ K TA+ + P+ P +
Sbjct: 3 GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA--NIPSTPGKIMMN 56
Query: 119 IWDGS---DWATNGGKYR-VNYKYAPY-VTEFSDFVLHGCSFDPIEQTSS 163
+W+G+ DW G Y N YA Y +++ G F+P +S
Sbjct: 57 LWNGTGVDDWL---GSYNGANPLYAEYDWVKYTSNQTGGSFFEPFNSYNS 103
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 21 GDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGR--------EERYNLWFDPSD 72
GD+ D ++ +R D + + NG + R Y+L FDP +
Sbjct: 131 GDVQYSEIDVVELTQKSAVRESDHDLHNIVVKNGKPTWXRPGSFPQTNHNGYHLPFDPRN 190
Query: 73 DFHQYSILWTDSQIIFYIDGIPIRE 97
DFH Y + T +I +Y+DG + E
Sbjct: 191 DFHTYGVNVTKDKITWYVDGEIVGE 215
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 27 NHDEID-FEFLGNIRGKDWRIQTNIYGNG-STSIGREERYNL---WFDPSDDFHQYSILW 81
N EID EFLG+ + I ++G G S S G Y L D ++DFH + I+W
Sbjct: 134 NCGEIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIVW 190
Query: 82 TDSQIIFYIDGIPIREF--KRTASMGGDFP-AKPMSLYATIWDGSDWATN 128
+I +Y+DG E ++ +MG ++ KP + + G W N
Sbjct: 191 YPDKIKWYVDGTFYHEVTKEQVEAMGYEWVFDKPFYIILNLAVGGYWPGN 240
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 30 EIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQII 87
E+D E LG G Q+NI + + E+++ P+ D FH Y + WT + +
Sbjct: 56 EVDIEVLGKSPGS---FQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVR 111
Query: 88 FYIDGIPIRE 97
+ +DG +R+
Sbjct: 112 WTVDGQEVRK 121
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 30 EIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQII 87
E+D E LG G Q+NI + + E+++ P+ D FH Y + WT + +
Sbjct: 54 EVDIEVLGKNPGS---FQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVR 109
Query: 88 FYIDGIPIRE 97
+ +DG +R+
Sbjct: 110 WTVDGQEVRK 119
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 30 EIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQII 87
E+D E LG G Q+NI + + E+++ P+ D FH Y + WT + +
Sbjct: 53 EVDIEVLGKNPGS---FQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVR 108
Query: 88 FYIDGIPIRE 97
+ +DG +R+
Sbjct: 109 WTVDGQEVRK 118
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 30 EIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQII 87
E+D E LG G Q+NI + + E+++ P+ D FH Y + WT + +
Sbjct: 56 EVDIEVLGKNPGS---FQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVR 111
Query: 88 FYIDGIPIRE 97
+ +DG +R+
Sbjct: 112 WTVDGQEVRK 121
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 30 EIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQII 87
E+D E LG G Q+NI + + E+++ P+ D FH Y + WT + +
Sbjct: 53 EVDIEVLGKNPGS---FQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVR 108
Query: 88 FYIDGIPIRE 97
+ +DG +R+
Sbjct: 109 WTVDGQEVRK 118
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 69 DPSDDFHQYSILWTDSQIIFYIDG 92
D S+DFH +SI W + ++ +Y+DG
Sbjct: 173 DFSEDFHIFSIEWDEDEVEWYVDG 196
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 69 DPSDDFHQYSILWTDSQIIFYIDG 92
D S+DFH +SI W + ++ +Y+DG
Sbjct: 181 DFSEDFHIFSIEWDEDEVEWYVDG 204
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 30 EIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQII 87
E+D E LG G Q+NI G + + P+ D FH Y + WT + +
Sbjct: 54 EVDIEVLGKNPGS---FQSNII-TGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVR 109
Query: 88 FYIDGIPIRE 97
+ +DG +R+
Sbjct: 110 WTVDGQEVRK 119
>pdb|4AWD|A Chain A, Crystal Structure Of The Beta-Porphyranase Bpgh16b
(Bacple_01689) From The Human Gut Bacterium Bacteroides
Plebeius
pdb|4AWD|B Chain B, Crystal Structure Of The Beta-Porphyranase Bpgh16b
(Bacple_01689) From The Human Gut Bacterium Bacteroides
Plebeius
Length = 324
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 69 DPS-DDFHQYSILWTDSQII-FYIDG 92
DPS +DFH Y W D+ + FY DG
Sbjct: 234 DPSAEDFHTYGCWWVDANTVKFYYDG 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,768,470
Number of Sequences: 62578
Number of extensions: 331642
Number of successful extensions: 658
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 39
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)