Query 025292
Match_columns 255
No_of_seqs 267 out of 1342
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02176 GH16_XET Xyloglucan en 100.0 3E-69 6.4E-74 488.0 25.4 205 1-213 53-263 (263)
2 PLN03161 Probable xyloglucan e 100.0 1.9E-68 4.1E-73 487.0 24.3 209 1-216 74-289 (291)
3 cd02183 GH16_fungal_CRH1_trans 100.0 1.5E-37 3.2E-42 272.1 19.3 140 1-153 52-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 2.8E-31 6E-36 232.4 19.0 136 1-151 73-211 (212)
5 cd00413 Glyco_hydrolase_16 gly 100.0 9.6E-28 2.1E-32 207.1 18.1 136 1-151 72-210 (210)
6 cd08023 GH16_laminarinase_like 100.0 1E-27 2.2E-32 211.8 18.0 143 1-151 84-235 (235)
7 PF00722 Glyco_hydro_16: Glyco 100.0 1.6E-27 3.4E-32 202.2 16.1 133 1-149 52-185 (185)
8 cd02178 GH16_beta_agarase Beta 100.0 2E-27 4.3E-32 214.0 16.6 144 1-151 103-257 (258)
9 cd02182 GH16_Strep_laminarinas 99.9 8E-26 1.7E-30 203.7 15.5 144 1-152 92-259 (259)
10 cd02177 GH16_kappa_carrageenas 99.9 4.3E-25 9.2E-30 200.9 17.5 140 1-151 97-268 (269)
11 cd02180 GH16_fungal_KRE6_gluca 99.9 3.8E-25 8.2E-30 203.6 16.3 147 1-152 84-295 (295)
12 cd08024 GH16_CCF Coelomic cyto 99.9 9.3E-24 2E-28 197.1 15.4 125 1-126 119-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 99.9 5.1E-23 1.1E-27 191.5 13.5 121 1-123 116-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.8 2.9E-20 6.4E-25 175.0 14.5 138 1-150 123-262 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 6.1E-20 1.3E-24 127.8 4.3 43 170-213 8-51 (51)
16 cd02181 GH16_fungal_Lam16A_glu 99.0 1.1E-09 2.4E-14 100.9 8.1 119 4-126 89-251 (293)
17 PF03935 SKN1: Beta-glucan syn 99.0 1.7E-09 3.6E-14 105.8 9.2 88 71-168 365-465 (504)
18 PF10287 DUF2401: Putative TOS 91.5 0.51 1.1E-05 42.6 6.2 66 12-84 122-207 (235)
19 PF09264 Sial-lect-inser: Vibr 91.4 0.38 8.3E-06 42.1 5.0 28 72-99 92-121 (198)
20 PF13385 Laminin_G_3: Concanav 90.1 1.3 2.9E-05 34.5 6.9 69 70-155 83-151 (157)
21 smart00560 LamGL LamG-like jel 89.8 3.5 7.6E-05 33.1 9.2 72 68-156 57-131 (133)
22 smart00159 PTX Pentraxin / C-r 86.1 10 0.00022 33.0 10.4 77 70-156 88-166 (206)
23 PF06439 DUF1080: Domain of Un 79.4 4.6 0.0001 33.5 5.4 33 69-101 124-156 (185)
24 cd00152 PTX Pentraxins are pla 78.5 15 0.00033 31.6 8.6 77 70-156 88-166 (201)
25 cd00110 LamG Laminin G domain; 76.1 13 0.00029 29.2 7.0 73 71-151 79-151 (151)
26 PF00354 Pentaxin: Pentaxin fa 60.0 1E+02 0.0022 26.6 9.7 76 71-156 83-160 (195)
27 smart00210 TSPN Thrombospondin 56.4 15 0.00032 31.3 3.8 29 71-99 116-144 (184)
28 smart00282 LamG Laminin G doma 50.3 70 0.0015 24.9 6.6 72 71-151 61-133 (135)
29 PF14099 Polysacc_lyase: Polys 48.7 85 0.0018 27.0 7.4 73 66-150 146-224 (224)
30 PF09224 DUF1961: Domain of un 45.1 1E+02 0.0023 27.7 7.3 59 72-150 159-218 (218)
31 KOG1834 Calsyntenin [Extracell 42.2 30 0.00066 36.0 3.9 52 71-126 441-492 (952)
32 PF02210 Laminin_G_2: Laminin 42.1 1.4E+02 0.0031 22.2 9.1 75 71-152 53-127 (128)
33 PF00337 Gal-bind_lectin: Gala 32.6 2.5E+02 0.0053 22.1 9.3 74 26-100 24-110 (133)
34 PF06832 BiPBP_C: Penicillin-B 31.1 60 0.0013 24.1 3.1 35 85-121 44-79 (89)
35 cd00070 GLECT Galectin/galacto 30.1 1.6E+02 0.0034 23.2 5.7 71 27-100 25-105 (127)
36 PF02973 Sialidase: Sialidase, 28.5 3.5E+02 0.0076 23.7 7.9 71 72-156 103-178 (190)
37 PF07691 PA14: PA14 domain; I 25.4 1.1E+02 0.0025 23.9 4.0 29 70-99 57-85 (145)
38 PF12248 Methyltransf_FA: Farn 24.9 3.2E+02 0.0069 20.9 6.9 45 71-121 51-97 (102)
39 PF03935 SKN1: Beta-glucan syn 22.0 32 0.0007 34.6 0.2 20 1-21 204-226 (504)
No 1
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=3e-69 Score=488.00 Aligned_cols=205 Identities=47% Similarity=0.926 Sum_probs=187.2
Q ss_pred CceeecCC--CCceEEEEEeecCCCCCCCCCceEEEEeCCCCCCCcEEEEeEEcCCcccCCcceeeecCCCCCCCcEEEE
Q 025292 1 MCLCIDEE--LGIFTFGLQMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYS 78 (255)
Q Consensus 1 ~~~~~~~G--~G~~v~AFwl~s~~~~~~~~dEIDiE~lG~~~g~p~~vqTNv~~~G~~~~~r~~~~~l~fDps~dFH~Y~ 78 (255)
||+|+|+| +|+ ||||||++++ |+.+|||||||||+++|+|+++|||+|.+|.+ ++++++.++|||+++||+|+
T Consensus 53 ~riKlp~g~s~G~-~pAFwl~~~~--wp~~~EID~E~lGn~~g~~~~~qtnv~~~g~g--~r~~~~~l~fdpt~dFHtY~ 127 (263)
T cd02176 53 MRIKLPPGDSAGT-VTAFYLSSQG--PDNHDEIDFEFLGNVTGQPYTLQTNVFANGVG--GREQRIYLWFDPTADFHTYS 127 (263)
T ss_pred EEEEeCCCCCCCe-EEEEEECCCC--CCCCCeEEEEEecccCCCceEEEEEEeCCCCC--CCceeeecCCCCCCCeEEEE
Confidence 58999997 896 9999999986 78999999999999999999999999998874 58889999999999999999
Q ss_pred EEEcCCeEEEEECCEEEEEEeecCCCCCCCC-CCceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeEEEEeeeccCC
Q 025292 79 ILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDP 157 (255)
Q Consensus 79 IdWtp~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~v~v~~c~~~~ 157 (255)
|+|+|++|+|||||++||++++.+..|.+|| ++||+|++|||+||+|||+||++++||+++||+|.|++|+|.+|.+++
T Consensus 128 i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~ 207 (263)
T cd02176 128 ILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDP 207 (263)
T ss_pred EEEccceEEEEECCEEEEEEecccccCCCCCccceEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCC
Confidence 9999999999999999999999877788999 599999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCC---cccCCCCCCCCCCHHHHHHHHHHhhcCeEEcccccCCCCCCCCCcc
Q 025292 158 IEQTSSKCDI---TESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 213 (255)
Q Consensus 158 ~~~~~~~C~~---~~w~~~~~~~~l~~~q~~~~~~vr~~~m~YdYC~D~~R~p~~p~EC 213 (255)
.. ..|.. ..|+..+.+++|+.+|+++|+|||+||||||||+|++|||.+||||
T Consensus 208 ~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 208 GD---SFSSCSCTEDWWNGSTYQQLSANQQRAMEWVRRNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred CC---ccccCCCccccccccccccCCHHHHHHHHHHHHCCEEEecCCCCCcCCCCcCCC
Confidence 32 23432 2244357789999999999999999999999999999999999999
No 2
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=1.9e-68 Score=486.99 Aligned_cols=209 Identities=33% Similarity=0.718 Sum_probs=188.3
Q ss_pred CceeecCC--CCceEEEEEeecCCCCCCCCCceEEEEeCCCCCCCcEEEEeEEcCCcccCCcceeeecCCCCCCCcEEEE
Q 025292 1 MCLCIDEE--LGIFTFGLQMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYS 78 (255)
Q Consensus 1 ~~~~~~~G--~G~~v~AFwl~s~~~~~~~~dEIDiE~lG~~~g~p~~vqTNv~~~G~~~~~r~~~~~l~fDps~dFH~Y~ 78 (255)
||+|+|+| +|+ ||||||++.+ +.+|||||||||+++++|+++|||+|.+|. +++++++.|+|||+++||+|+
T Consensus 74 ~riKLp~G~saG~-v~AFwl~s~~---~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~--g~re~~~~l~fDpt~dFHtYs 147 (291)
T PLN03161 74 MLIKLVPGNSAGT-VTAYYLSSTG---SRHDEIDFEFLGNVSGQPYTIHTNIYTQGN--GSREQQFRPWFDPTADFHNYT 147 (291)
T ss_pred EEEEeCCCCCCCe-EEEEEecCCC---CCCCeEEEEecCCCCCCceEEEeceEeCCc--CCcceeccccCCCccCcEEEE
Confidence 58999986 796 9999999863 589999999999999999999999999987 468899999999999999999
Q ss_pred EEEcCCeEEEEECCEEEEEEeecCCCCCCCC-CCceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeEEEEeeeccCC
Q 025292 79 ILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDP 157 (255)
Q Consensus 79 IdWtp~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~v~v~~c~~~~ 157 (255)
|+|+|++|+|||||++||++++.+..|.+|| ++||+|++|||+|++|||+||++||||+++||+|.|++|+|++|.+++
T Consensus 148 I~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~ 227 (291)
T PLN03161 148 IHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNG 227 (291)
T ss_pred EEEchhhEEEEECCEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCC
Confidence 9999999999999999999998877788999 689999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCCC---cccCCCCCCCCCCHHHHHHHHHHhhcCeEEcccccCCCCCC-CCCccccC
Q 025292 158 IEQTSSKCDI---TESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKV-PPFECVIN 216 (255)
Q Consensus 158 ~~~~~~~C~~---~~w~~~~~~~~l~~~q~~~~~~vr~~~m~YdYC~D~~R~p~-~p~EC~~~ 216 (255)
... ...|.. ..|+..++|++|+++|+++|+|||+||||||||+|++|||+ +||||...
T Consensus 228 ~~~-~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 228 PVS-IKQCADPTPSNWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred CCC-ccccCCCCccccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 311 236854 23544677899999999999999999999999999999998 89999764
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.5e-37 Score=272.11 Aligned_cols=140 Identities=30% Similarity=0.609 Sum_probs=123.0
Q ss_pred CceeecCCCCceEEEEEeecCCCCCCCCCceEEEEeCCCCCCCcEEEEeEEcCCcc-cCCcceeeecCCCCCCCcEEEEE
Q 025292 1 MCLCIDEELGIFTFGLQMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGST-SIGREERYNLWFDPSDDFHQYSI 79 (255)
Q Consensus 1 ~~~~~~~G~G~~v~AFwl~s~~~~~~~~dEIDiE~lG~~~g~p~~vqTNv~~~G~~-~~~r~~~~~l~fDps~dFH~Y~I 79 (255)
+|+|+|.|+|+ ||||||+++ .++|||||++|++ +..+|+|+|.+|.. ..++++.+.++++++++||+|+|
T Consensus 52 aR~Klp~g~G~-wpAfWl~~~-----~~gEIDIE~~G~~---~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~v 122 (203)
T cd02183 52 VTMKAAPGQGI-VSSFVLQSD-----DLDEIDWEWVGGD---LTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTI 122 (203)
T ss_pred EEEEecCCCeE-EEEEEEECC-----CCCEEEEEecCCC---CCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEE
Confidence 68999999996 999999985 4799999999974 56899999987754 23566778888999999999999
Q ss_pred EEcCCeEEEEECCEEEEEEeecCC-CCCCCCCCceeEEEEeecCCC---------CcCCCCccccCCCcccEEEEEeEEE
Q 025292 80 LWTDSQIIFYIDGIPIREFKRTAS-MGGDFPAKPMSLYATIWDGSD---------WATNGGKYRVNYKYAPYVTEFSDFV 149 (255)
Q Consensus 80 dWtp~~I~fyVDG~~vr~~~~~~~-~g~~~P~~Pm~l~lnlW~gg~---------Wat~GG~~~id~s~aPf~a~~~~v~ 149 (255)
+|+|+.|+|||||++++++++.+. .+..||++||+|+||+|+||+ || || ++||+.+||+|.|++|+
T Consensus 123 eWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~~P~~l~ln~W~gg~~~~~~g~~~Wa--Gg--~~d~~~~P~~~~vd~v~ 198 (203)
T cd02183 123 DWTKDRITWYIDGKVVRTLTKADTTGGYGYPQTPMRLQIGIWAGGDPSNAPGTIEWA--GG--ETDYDKGPFTMYVKSVT 198 (203)
T ss_pred EEecCEEEEEECCEEEEEEehhhcccCCCCCCCCcEEEEEEecCCCccccCCcccCC--CC--ccCCCCCCEEEEEEEEE
Confidence 999999999999999999987543 356799999999999999985 99 77 59999999999999999
Q ss_pred Eeee
Q 025292 150 LHGC 153 (255)
Q Consensus 150 v~~c 153 (255)
|.++
T Consensus 199 v~~~ 202 (203)
T cd02183 199 VTDY 202 (203)
T ss_pred EEeC
Confidence 9875
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=99.98 E-value=2.8e-31 Score=232.39 Aligned_cols=136 Identities=30% Similarity=0.546 Sum_probs=115.4
Q ss_pred CceeecCCCCceEEEEEeecCCCCCCCCCceEEEEeCCCCCCCcEEEEeEEcCCcccCCcceeeecCCCCCCCcEEEEEE
Q 025292 1 MCLCIDEELGIFTFGLQMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSIL 80 (255)
Q Consensus 1 ~~~~~~~G~G~~v~AFwl~s~~~~~~~~dEIDiE~lG~~~g~p~~vqTNv~~~G~~~~~r~~~~~l~fDps~dFH~Y~Id 80 (255)
+|+|++.+.|+ |+||||++.+..+..++|||||++|++. ..+++|+|.+|.. .....+.++++++++||+|+|+
T Consensus 73 ar~k~~~~~G~-~~Afwl~~~~~~~~~~~EIDiE~~g~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~H~Y~v~ 146 (212)
T cd02175 73 VRMKPAKGSGV-VSSFFTYTGPYDGDPHDEIDIEFLGKDT---TKVQFNYYTNGVG--GHEKLIDLGFDASEGFHTYAFE 146 (212)
T ss_pred EEEEcCCCCeE-EEEEEEEecCCCCCCCCEEEEEEccCCC---CEeEEEEECCCCC--CCceEEeCCCCcccccEEEEEE
Confidence 48999999996 9999999854334567999999999864 4788999987653 4556677889999999999999
Q ss_pred EcCCeEEEEECCEEEEEEeecCCCCCCCCCCceeEEEEeecCC---CCcCCCCccccCCCcccEEEEEeEEEEe
Q 025292 81 WTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---DWATNGGKYRVNYKYAPYVTEFSDFVLH 151 (255)
Q Consensus 81 Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg---~Wat~GG~~~id~s~aPf~a~~~~v~v~ 151 (255)
|+|++|+|||||+++++++..+ ..+|++||+|++|||.++ +|+ | ++|. .+|++|+||+|||+
T Consensus 147 W~~~~i~~yvDg~~v~~~~~~~---~~~p~~p~~i~~n~w~~~~~~~W~---G--~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 147 WEPDSIRWYVDGELVHEATATD---PNIPDTPGKIMMNLWPGDGVDDWL---G--PFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred EeCCEEEEEECCEEEEEEcCcc---CCCCCCCcEEEEEEEcCCCCCCcC---C--cCCC-CCCeEEEEEEEEEe
Confidence 9999999999999999998753 368999999999999985 598 5 3677 89999999999985
No 5
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=99.96 E-value=9.6e-28 Score=207.07 Aligned_cols=136 Identities=29% Similarity=0.447 Sum_probs=113.6
Q ss_pred CceeecCCCCceEEEEEeecCCCCCCCCCceEEEEeCCCCCCCcEEEEeEEcCCccc---CCcceeeecCCCCCCCcEEE
Q 025292 1 MCLCIDEELGIFTFGLQMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTS---IGREERYNLWFDPSDDFHQY 77 (255)
Q Consensus 1 ~~~~~~~G~G~~v~AFwl~s~~~~~~~~dEIDiE~lG~~~g~p~~vqTNv~~~G~~~---~~r~~~~~l~fDps~dFH~Y 77 (255)
+|+|++.+.|+ |+||||++.+..++.++|||||++|++ +..+++++|..+... ......+.+++++.++||+|
T Consensus 72 ar~k~~~~~G~-~~afw~~~~~~~~~~~~EIDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y 147 (210)
T cd00413 72 ARAKLAGGPGA-VSAFWTYSDDDDPPDGGEIDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTY 147 (210)
T ss_pred EEEEcCCCCce-EEEEEEeCCCCCCCCCCeEEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEE
Confidence 48999999996 999999998654578999999999976 346888988765431 23445566777789999999
Q ss_pred EEEEcCCeEEEEECCEEEEEEeecCCCCCCCCCCceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeEEEEe
Q 025292 78 SILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLH 151 (255)
Q Consensus 78 ~IdWtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~v~v~ 151 (255)
+|+|+|+.|+|||||++++++.+. +|++||+|+||+|.+++|+ +. .+....|..|.|++|+|.
T Consensus 148 ~~~W~~~~i~~yvDG~~~~~~~~~------~p~~p~~i~ln~~~~~~~~---~~--~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 148 RVDWTPGEITFYVDGVLVATITNQ------VPDDPMNIILNLWSDGGWW---WG--GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred EEEEeCCEEEEEECCEEEEEECCC------CCCCCcEEEEEEEECCCCc---cc--CCCCCCCcEEEEEEEEEC
Confidence 999999999999999999999752 7899999999999999987 31 345688999999999984
No 6
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.96 E-value=1e-27 Score=211.76 Aligned_cols=143 Identities=24% Similarity=0.394 Sum_probs=115.9
Q ss_pred CceeecCCCCceEEEEEeecCCCC---CCCCCceEE-EEeCCCCCCCcEEEEeEEcCCcc--cCCcceeeecCC-CCCCC
Q 025292 1 MCLCIDEELGIFTFGLQMSNGDMF---EKNHDEIDF-EFLGNIRGKDWRIQTNIYGNGST--SIGREERYNLWF-DPSDD 73 (255)
Q Consensus 1 ~~~~~~~G~G~~v~AFwl~s~~~~---~~~~dEIDi-E~lG~~~g~p~~vqTNv~~~G~~--~~~r~~~~~l~f-Dps~d 73 (255)
+|+|++.+.|+ ||||||++.+.. |+.++|||| |++|+. +..+++++|..+.. .......+.+.+ +++++
T Consensus 84 ~r~k~~~~~G~-~pafWl~~~~~~~~~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (235)
T cd08023 84 ARAKLPKGQGT-WPAFWMLGENIKYVGWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDD 159 (235)
T ss_pred EEEEccCCCCc-eeEEEEcCCCCCCCCCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCC
Confidence 58999999997 999999997642 678999998 999986 44789999977653 223445566665 78999
Q ss_pred cEEEEEEEcCCeEEEEECCEEEEEEeecCCCC-CCCC-CCceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeEEEEe
Q 025292 74 FHQYSILWTDSQIIFYIDGIPIREFKRTASMG-GDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLH 151 (255)
Q Consensus 74 FH~Y~IdWtp~~I~fyVDG~~vr~~~~~~~~g-~~~P-~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~v~v~ 151 (255)
||+|+|+|+|++|+|||||++++++++..... ..+| ++||+|+||+|++|+|+ |. .......|..|.||+|||+
T Consensus 160 fHtY~~~W~p~~i~~yvDG~~v~~~~~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 160 FHTYAVEWTPDKITFYVDGKLYFTYTNPNTDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEVDYVRVY 235 (235)
T ss_pred cEEEEEEEECCEEEEEECCEEEEEEcccccCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEEEEEEEC
Confidence 99999999999999999999999998764321 2345 89999999999999998 42 1344578999999999984
No 7
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=99.95 E-value=1.6e-27 Score=202.23 Aligned_cols=133 Identities=35% Similarity=0.564 Sum_probs=111.4
Q ss_pred CceeecCCCCceEEEEEeecCCCCCCCCCceEEEEeCCCCCCCcEEEEeEEcCCcccCCcceeeecCCCCCCCcEEEEEE
Q 025292 1 MCLCIDEELGIFTFGLQMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSIL 80 (255)
Q Consensus 1 ~~~~~~~G~G~~v~AFwl~s~~~~~~~~dEIDiE~lG~~~g~p~~vqTNv~~~G~~~~~r~~~~~l~fDps~dFH~Y~Id 80 (255)
+|+|++.+.|+ |+||||++.+. |+.++|||||++|+++. .+++|+|..|.........+.+.++++++||+|+|+
T Consensus 52 ar~k~~~~~G~-~~afwl~~~~~-~~~~~EIDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~ 126 (185)
T PF00722_consen 52 ARIKAPPGPGV-WPAFWLTGADG-WPDGGEIDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFE 126 (185)
T ss_dssp EEEECSCSTTE-EEEEEEETTGS-TTTTEEEEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEE
T ss_pred EEEEecCCCce-Eeccccccccc-ccchhhhhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEE
Confidence 47899999996 99999976444 78999999999998654 699999988875322356777888999999999999
Q ss_pred EcCCeEEEEECCEEEEEEeecCCCCCCCCC-CceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeEEE
Q 025292 81 WTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFV 149 (255)
Q Consensus 81 Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~-~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~v~ 149 (255)
|+|+.|+|||||++++++......+..||. .||+|.+++|.+++|++..| .|+||+||
T Consensus 127 W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 127 WTPDRIRFYIDGKLVRTVTNSDVPGSPYPFSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EETTEEEEEETTEEEEEEESSGSTTTCSSEEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred EecCeEEEEECCEEEEEEeccccccccCcccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 999999999999999999987654446895 99999999999998884444 67777775
No 8
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=99.95 E-value=2e-27 Score=214.00 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=108.9
Q ss_pred CceeecCCCCceEEEEEeecCCCCCCCCCceEE-EEeCCCCC--CCcEEEEeEEcCCcc---cCCc---ceeeecCCCCC
Q 025292 1 MCLCIDEELGIFTFGLQMSNGDMFEKNHDEIDF-EFLGNIRG--KDWRIQTNIYGNGST---SIGR---EERYNLWFDPS 71 (255)
Q Consensus 1 ~~~~~~~G~G~~v~AFwl~s~~~~~~~~dEIDi-E~lG~~~g--~p~~vqTNv~~~G~~---~~~r---~~~~~l~fDps 71 (255)
+|+|+|.+.| +|||||++.+ ++.++|||| |++|+..+ .+..+|+++|.-+.. ...+ ...+.+.++++
T Consensus 103 aR~K~p~~~~--~pAfW~~~~~--~~~~gEIDI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (258)
T cd02178 103 ARAKASNLPM--SSAFWLLSDT--KDSTTEIDILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELA 178 (258)
T ss_pred EEEEcCCCCc--cceEEEccCC--CCCCCcEEhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccc
Confidence 5899998764 7999999976 578999998 99997632 245788887632221 1111 23455667789
Q ss_pred CCcEEEEEEEc-CCeEEEEECCEEEEEEeecCCCCCCCC-CCceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeEEE
Q 025292 72 DDFHQYSILWT-DSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFV 149 (255)
Q Consensus 72 ~dFH~Y~IdWt-p~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~v~ 149 (255)
++||+|+|+|+ |++|+|||||++++++++.+. ...+| ++||+||||+++|| |+...+. ...-...|..|.|||||
T Consensus 179 ~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~~-~~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~p~~m~VDYVR 255 (258)
T cd02178 179 DDFHVYGVYWKDPDTIRFYIDGVLVRTVENSEI-TDGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDSKNTFYVDYVR 255 (258)
T ss_pred cCeEEEEEEEcCCCeEEEEECCEEEEEEcCccc-CcCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCCCCeEEEEEEE
Confidence 99999999999 999999999999999987544 33466 99999999999998 9832111 11234579999999999
Q ss_pred Ee
Q 025292 150 LH 151 (255)
Q Consensus 150 v~ 151 (255)
|+
T Consensus 256 vy 257 (258)
T cd02178 256 VY 257 (258)
T ss_pred Ee
Confidence 96
No 9
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.94 E-value=8e-26 Score=203.70 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=100.0
Q ss_pred CceeecC-----CCCceEEEEEeecCCC-----CCCCCCceEE-EEeCCCCCCCcEEEEeEEcCCccc-CCccee-ee-c
Q 025292 1 MCLCIDE-----ELGIFTFGLQMSNGDM-----FEKNHDEIDF-EFLGNIRGKDWRIQTNIYGNGSTS-IGREER-YN-L 66 (255)
Q Consensus 1 ~~~~~~~-----G~G~~v~AFwl~s~~~-----~~~~~dEIDi-E~lG~~~g~p~~vqTNv~~~G~~~-~~r~~~-~~-l 66 (255)
+|+|+|. ++|+ ||||||++.+. .||.++|||| |.+|... . ++.++|...... ..++.. .. .
T Consensus 92 aRik~p~~~~~~~~G~-wPAfWll~~~~~~~~~~WP~~GEIDImE~~~~~~---~-~~~t~H~~~~~~~~~~~~~~~~~~ 166 (259)
T cd02182 92 ASIRLGDVPGSNQQGI-WPAFWMLGDSYRGNGTNWPACGELDIMENVNGLS---T-GYGTLHCGVAPGGPCNEPTGIGAG 166 (259)
T ss_pred EEEECCCCcccCCCCc-CeeeeccCCCccCCCCCCCccceeeeeeccCCCC---c-eEEEEeeCCCCCCCCccccCcccC
Confidence 4788887 5796 99999999752 4789999998 9998642 2 344455322110 011111 00 0
Q ss_pred CCCCCCCcEEEEEEEcC-----CeEEEEECCEEEEEEeecCCCC-C--C-CCCCceeEEEEeecCCCCcCCCCccc-cCC
Q 025292 67 WFDPSDDFHQYSILWTD-----SQIIFYIDGIPIREFKRTASMG-G--D-FPAKPMSLYATIWDGSDWATNGGKYR-VNY 136 (255)
Q Consensus 67 ~fDps~dFH~Y~IdWtp-----~~I~fyVDG~~vr~~~~~~~~g-~--~-~P~~Pm~l~lnlW~gg~Wat~GG~~~-id~ 136 (255)
...+.++||+|+|+|++ +.|+|||||+++++++.....+ . + .|++||+||||+++||+|+ |... ..-
T Consensus 167 ~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~---~~~~~~~~ 243 (259)
T cd02182 167 TRLCDTGFHTYAVEIDRTNGDAESIRWYLDGVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP---GAPNGNTA 243 (259)
T ss_pred CCCCCCCcEEEEEEEccCCCCCCEEEEEECCEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC---CCCCcccc
Confidence 12245899999999997 9999999999999998642211 1 2 3489999999999999998 3211 112
Q ss_pred CcccEEEEEeEEEEee
Q 025292 137 KYAPYVTEFSDFVLHG 152 (255)
Q Consensus 137 s~aPf~a~~~~v~v~~ 152 (255)
...|-.|.||+|||+.
T Consensus 244 ~~~p~~m~VDyVRVyq 259 (259)
T cd02182 244 TGSGSAMEVDYVAVYS 259 (259)
T ss_pred cCCCceEEEEEEEEeC
Confidence 4578999999999963
No 10
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.93 E-value=4.3e-25 Score=200.94 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=103.7
Q ss_pred CceeecC-CCCceEEEEEeecCCC------CCCCCCceEE-EEeCCC---CCCCc----EEEEeEEcCCcccCC------
Q 025292 1 MCLCIDE-ELGIFTFGLQMSNGDM------FEKNHDEIDF-EFLGNI---RGKDW----RIQTNIYGNGSTSIG------ 59 (255)
Q Consensus 1 ~~~~~~~-G~G~~v~AFwl~s~~~------~~~~~dEIDi-E~lG~~---~g~p~----~vqTNv~~~G~~~~~------ 59 (255)
+|+|+++ |+|+ ||||||+++.. .||.++|||| |.+|.. .+++. ++|++++.+|.+...
T Consensus 97 aRik~~p~~~G~-wpAfW~~~~~~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~ 175 (269)
T cd02177 97 ARIKGADIFPGV-CPSFWLYSDIDYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYP 175 (269)
T ss_pred EEEECCCCCCce-EeEEEEeccCCCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccc
Confidence 5889755 9996 99999998521 3789999999 888754 12233 455555555543211
Q ss_pred --cceeeecCCCCCCCcEEEEEEEcCCeEEEEECCEEEEEEeecCCCCCCCCCCceeEEEEeecCC---------CCcCC
Q 025292 60 --REERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---------DWATN 128 (255)
Q Consensus 60 --r~~~~~l~fDps~dFH~Y~IdWtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg---------~Wat~ 128 (255)
....+.+++|++++||+|+|+|+|+.|+|||||++++++.+ .+..+||+|.+++-... .||
T Consensus 176 ~~~~~~~~~~~d~~~~fH~y~v~W~~~~i~~yvDg~~~~~~~~------~~w~~~~~~~~~~~~~~p~~~~~~~~~~~-- 247 (269)
T cd02177 176 PTEQLNYHRPFDPSKDFHTYGCNVNQDEIIWYVDGVEVGRKPN------KYWHRPMNVTLSLGLRKPFVKFFDNKNNA-- 247 (269)
T ss_pred cccceEEccCCCCccCcEEEEEEEeCCEEEEEECCEEEEEEcC------CccccccEEeeccccCcchhhhhccccCC--
Confidence 12246678899999999999999999999999999999964 24578898888875432 355
Q ss_pred CCccccCCCcccEEEEEeEEEEe
Q 025292 129 GGKYRVNYKYAPYVTEFSDFVLH 151 (255)
Q Consensus 129 GG~~~id~s~aPf~a~~~~v~v~ 151 (255)
|+ ..+.+.+|-.|+||+|||.
T Consensus 248 ~~--~~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 248 KA--REKASDFPTSMYVDYVRVW 268 (269)
T ss_pred CC--CCccCcCCceEEEEEEEEe
Confidence 33 3456789999999999996
No 11
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.93 E-value=3.8e-25 Score=203.61 Aligned_cols=147 Identities=15% Similarity=0.098 Sum_probs=99.6
Q ss_pred CceeecC---CCCceEEEEEeecCCC----------CCCC------CCceEE-EEeCCCCCCCcEE--------------
Q 025292 1 MCLCIDE---ELGIFTFGLQMSNGDM----------FEKN------HDEIDF-EFLGNIRGKDWRI-------------- 46 (255)
Q Consensus 1 ~~~~~~~---G~G~~v~AFwl~s~~~----------~~~~------~dEIDi-E~lG~~~g~p~~v-------------- 46 (255)
+|+|+|. ++|+ ||||||+++.. .||. ++|||| |.+|.+......+
T Consensus 84 aR~klp~~~~~~G~-WPAfWmlg~~~~~~~~~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~ 162 (295)
T cd02180 84 ASASLPGKPDVSGL-WPAVWTMGNLGRPGYLATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYR 162 (295)
T ss_pred EEEECCCCCCCCCc-ceeeecccccccccccccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeecccccccc
Confidence 5899997 5997 99999998531 2675 599998 9998543100111
Q ss_pred ------EEeEEcCC----cc-cCCccee-----eecCC----CCCCCcEEEEEEEcC-----CeEEEEECCEEEEEEeec
Q 025292 47 ------QTNIYGNG----ST-SIGREER-----YNLWF----DPSDDFHQYSILWTD-----SQIIFYIDGIPIREFKRT 101 (255)
Q Consensus 47 ------qTNv~~~G----~~-~~~r~~~-----~~l~f----Dps~dFH~Y~IdWtp-----~~I~fyVDG~~vr~~~~~ 101 (255)
++.+|..- .. .++..+. ..++. ...++||+|+|+|+| +.|+|||||+++++++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~ 242 (295)
T cd02180 163 PDYSSDFVTIYNDTTTIMNTYTGGVFQQAISCVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAK 242 (295)
T ss_pred CCCCccceEEecCcccccccccCCccccccccccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehH
Confidence 11122110 00 0010010 11111 136899999999999 899999999999999875
Q ss_pred CCC--C----CCCCCCceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeEEEEee
Q 025292 102 ASM--G----GDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHG 152 (255)
Q Consensus 102 ~~~--g----~~~P~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~v~v~~ 152 (255)
... + ..+|++||+|||||++||+|+ |. +.+-...|..|+||+|||+.
T Consensus 243 ~~~~~~~~~~~~~~~~P~ylILNlAvGg~w~---g~-~~~~~~~P~~m~VDyVRVYQ 295 (295)
T cd02180 243 ALGPNGNIGWRIIPEEPMYIILNLGISSNFQ---DI-DWDELQFPATMRIDYVRVYQ 295 (295)
T ss_pred HcCCcccccccccCCCCeEEEEEEEeccccC---CC-CcccCCCCCEEEEEEEEEEC
Confidence 321 1 246799999999999999998 42 34456789999999999973
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.91 E-value=9.3e-24 Score=197.09 Aligned_cols=125 Identities=22% Similarity=0.160 Sum_probs=92.7
Q ss_pred CceeecCCCCceEEEEEeecCCC---CCCCCCceEE-EEeCCCCCCC-------cEEEEeEEcCCcccC--Cc---ceee
Q 025292 1 MCLCIDEELGIFTFGLQMSNGDM---FEKNHDEIDF-EFLGNIRGKD-------WRIQTNIYGNGSTSI--GR---EERY 64 (255)
Q Consensus 1 ~~~~~~~G~G~~v~AFwl~s~~~---~~~~~dEIDi-E~lG~~~g~p-------~~vqTNv~~~G~~~~--~r---~~~~ 64 (255)
||||+|.|+|+ ||||||++.+. .||.++|||| |.+|+....+ ..+++++|....... .+ ....
T Consensus 119 ~RaKlP~G~g~-WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tlH~g~~~~~~~~~~~~~~~~ 197 (330)
T cd08024 119 VRAKLPTGDWL-WPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTLHWGPDPGQNRYTKTTGKRS 197 (330)
T ss_pred EEEECCCCCcc-ceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEEEeCCCCCCCccccccceec
Confidence 69999999997 99999999653 3789999998 9999864221 245666664322110 01 1111
Q ss_pred ecCCCCCCCcEEEEEEEcCCeEEEEECCEEEEEEeecC-------------------CCCCCCC-CCceeEEEEeecCCC
Q 025292 65 NLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTA-------------------SMGGDFP-AKPMSLYATIWDGSD 124 (255)
Q Consensus 65 ~l~fDps~dFH~Y~IdWtp~~I~fyVDG~~vr~~~~~~-------------------~~g~~~P-~~Pm~l~lnlW~gg~ 124 (255)
....+.+++||+|+|+|+|+.|+|||||+++.++.... ..+..+| ++|+||+|||++||.
T Consensus 198 ~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~~aPFd~~fyliLNvAVGG~ 277 (330)
T cd08024 198 DSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGKMAPFDQEFYLILNVAVGGT 277 (330)
T ss_pred cCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCcCCCCCCCEEEEEEEEecCC
Confidence 22346688999999999999999999999999998621 0124568 999999999999999
Q ss_pred Cc
Q 025292 125 WA 126 (255)
Q Consensus 125 Wa 126 (255)
|.
T Consensus 278 ~~ 279 (330)
T cd08024 278 NG 279 (330)
T ss_pred CC
Confidence 85
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.89 E-value=5.1e-23 Score=191.52 Aligned_cols=121 Identities=17% Similarity=0.087 Sum_probs=85.7
Q ss_pred CceeecCCCCceEEEEEeecCCC-C--C-CCCCceEE-EEeCCCCCC-------CcEEEEeEEcCCcccCCcc---eeee
Q 025292 1 MCLCIDEELGIFTFGLQMSNGDM-F--E-KNHDEIDF-EFLGNIRGK-------DWRIQTNIYGNGSTSIGRE---ERYN 65 (255)
Q Consensus 1 ~~~~~~~G~G~~v~AFwl~s~~~-~--~-~~~dEIDi-E~lG~~~g~-------p~~vqTNv~~~G~~~~~r~---~~~~ 65 (255)
||||||+|+|+ ||||||++.+. + | |.+||||| |.+||..-. ..+++...|..... ..+. ....
T Consensus 116 vRAKlP~Gdgl-WPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g~~~~~~~-~~~~~~~~~~~ 193 (321)
T cd02179 116 IRAKLPKGDWI-YPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGGPVLTDAE-PHRSANLKTKI 193 (321)
T ss_pred EEEEccCCCCc-ccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEcccccCCCc-ccccccccccC
Confidence 69999999997 99999999754 2 3 78999999 999986210 01222222211110 0011 1111
Q ss_pred cCCCCCCCcEEEEEEEcCCeEEEEECCEEEEEEeecCC----------------CCCCCC-CCceeEEEEeecCC
Q 025292 66 LWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTAS----------------MGGDFP-AKPMSLYATIWDGS 123 (255)
Q Consensus 66 l~fDps~dFH~Y~IdWtp~~I~fyVDG~~vr~~~~~~~----------------~g~~~P-~~Pm~l~lnlW~gg 123 (255)
...+.+++||+|+|+|+|+.|+|||||+++++++.... ....+| ++|+||+|||++||
T Consensus 194 ~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD~~FyliLNlAVGG 268 (321)
T cd02179 194 NNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFDKEFYLSLGVGVGG 268 (321)
T ss_pred CCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCCCCeEEEEEEEecC
Confidence 12456899999999999999999999999999986421 123457 99999999999998
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=2.9e-20 Score=174.99 Aligned_cols=138 Identities=25% Similarity=0.351 Sum_probs=105.9
Q ss_pred CceeecCCCCceEEEEEeecCCC-CCCCCCceEEEEeCCCCCCCcEEEEeEEcCCcccCCcceeeecCC-CCCCCcEEEE
Q 025292 1 MCLCIDEELGIFTFGLQMSNGDM-FEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWF-DPSDDFHQYS 78 (255)
Q Consensus 1 ~~~~~~~G~G~~v~AFwl~s~~~-~~~~~dEIDiE~lG~~~g~p~~vqTNv~~~G~~~~~r~~~~~l~f-Dps~dFH~Y~ 78 (255)
||+++|.++|+ |||||||++.. .+..++|||||+||+++. +..+|+|.+.++.+ +.+....+++ +..++||+|.
T Consensus 123 vrak~~~~~G~-wpafw~~~g~~~dg~wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~--~~~~~~~~~~~~~~~~fhty~ 198 (355)
T COG2273 123 VRAKLPLVSGL-WPAFWTLTGLSRDGGWPDEIDIEDLGGQST-NTVIQTNHYQGGGG--GTSKLVDHPNPDAIDGFHTYA 198 (355)
T ss_pred EEeccCCCccc-ceeeEeccCcccCCCCCcceeeeeecCCCc-ccceEeeeeccCCC--CceecccccCCCcccccccce
Confidence 68999999997 99999999743 345679999999997754 34599999988875 3444445556 8899999999
Q ss_pred EEEcCCeEEEEECCEEEEEEeecCCCCCCCCCCceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeEEEE
Q 025292 79 ILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVL 150 (255)
Q Consensus 79 IdWtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~v~v 150 (255)
++|.++.|+|||||++++++... ...|..||++++|||.++.+.+.-| .......|.. ++++++
T Consensus 199 ~~W~~~~i~Wyvdg~~~~~~~~p----~~~~~~p~y~~~nl~~~~~~~~~~~--~~~~~~~~~~--~~~~~~ 262 (355)
T COG2273 199 FLWGEDSISWYVDGAPVATATKP----DYIPQIPFYVLVNLWMGGYAGGPPG--EALSAGSPLN--IDYYRV 262 (355)
T ss_pred eeccCCeEEEEEcceEeeEEecc----ccCcCCcceeEEeecccCccCCCcc--ccccCCcceE--eeeeee
Confidence 99999999999999999999863 3458999999999999987653323 1333344444 444443
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.79 E-value=6.1e-20 Score=127.79 Aligned_cols=43 Identities=37% Similarity=0.607 Sum_probs=34.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhhcCeEEcccccCCCCCCC-CCcc
Q 025292 170 SSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVP-PFEC 213 (255)
Q Consensus 170 w~~~~~~~~l~~~q~~~~~~vr~~~m~YdYC~D~~R~p~~-p~EC 213 (255)
|++++.++ ||..|+++|+|||+||||||||+|++|||.+ |+||
T Consensus 8 w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 8 WWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp GGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred cccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 44456667 9999999999999999999999999999985 9999
No 16
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=98.99 E-value=1.1e-09 Score=100.90 Aligned_cols=119 Identities=21% Similarity=0.273 Sum_probs=72.5
Q ss_pred eecCCCCceEEEEEeecCCCCCCCCCceEE-EEeCCCCCCCcEEEEe----EEcCCcccC-------------C------
Q 025292 4 CIDEELGIFTFGLQMSNGDMFEKNHDEIDF-EFLGNIRGKDWRIQTN----IYGNGSTSI-------------G------ 59 (255)
Q Consensus 4 ~~~~G~G~~v~AFwl~s~~~~~~~~dEIDi-E~lG~~~g~p~~vqTN----v~~~G~~~~-------------~------ 59 (255)
++|.|.|+ ||||||++.. ||..+|||| |.++..+..-.+|||. +-..+...+ +
T Consensus 89 ~~P~g~G~-WPAfW~~g~~--WP~~GEIDImE~vn~~~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~ 165 (293)
T cd02181 89 HMPGGCGT-WPAFWTVGPN--WPNGGEIDIIEGVNLQTSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVT 165 (293)
T ss_pred hCCCCCCc-cchhhhcCCC--CCCCCcEEEEeccCCCCceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceee
Confidence 78999996 9999999874 899999998 9998643322234432 000100000 0
Q ss_pred --cceeeecCCCCCCCcEEEEEEEcCCeEEEEE---CCEEEEEEeecC---CCC---CCCCC---------CceeEEEEe
Q 025292 60 --REERYNLWFDPSDDFHQYSILWTDSQIIFYI---DGIPIREFKRTA---SMG---GDFPA---------KPMSLYATI 119 (255)
Q Consensus 60 --r~~~~~l~fDps~dFH~Y~IdWtp~~I~fyV---DG~~vr~~~~~~---~~g---~~~P~---------~Pm~l~lnl 119 (255)
....|-..|+ +..=-+|.++|+.+.|..+. +.+|--....+. .-| ..||. +++.|++||
T Consensus 166 ~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~~iP~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~ 244 (293)
T cd02181 166 STSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRGSIPADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDT 244 (293)
T ss_pred cCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCCCCCcccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEe
Confidence 0011222333 45678999999999987554 222211111110 012 34664 799999999
Q ss_pred ecCCCCc
Q 025292 120 WDGSDWA 126 (255)
Q Consensus 120 W~gg~Wa 126 (255)
-.-|+||
T Consensus 245 tfCGdwA 251 (293)
T cd02181 245 TFCGDWA 251 (293)
T ss_pred ecccccc
Confidence 9999999
No 17
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=98.98 E-value=1.7e-09 Score=105.79 Aligned_cols=88 Identities=17% Similarity=0.255 Sum_probs=70.3
Q ss_pred CCCcEEEEEEEcCC-----eEEEEECCEEEEEEeecCCC--C----CCCCCCceeEEEEeecCCCCcCCCCccccCCC--
Q 025292 71 SDDFHQYSILWTDS-----QIIFYIDGIPIREFKRTASM--G----GDFPAKPMSLYATIWDGSDWATNGGKYRVNYK-- 137 (255)
Q Consensus 71 s~dFH~Y~IdWtp~-----~I~fyVDG~~vr~~~~~~~~--g----~~~P~~Pm~l~lnlW~gg~Wat~GG~~~id~s-- 137 (255)
..+||+|++||.|. .|+|+|||+++.++...... + -.+|..||+||+||....+|+ .+||.
T Consensus 365 ~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~~~~I~~R~Ip~EPMyIIlNlgmS~sf~------~vd~~~L 438 (504)
T PF03935_consen 365 GGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGPNPNIGQRPIPEEPMYIILNLGMSSSFG------YVDWNHL 438 (504)
T ss_pred CCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCCCCCcCccccCcCCceeeeccccccccC------ccccccc
Confidence 37899999999874 89999999999999875421 1 257899999999999999996 47775
Q ss_pred cccEEEEEeEEEEeeeccCCCCCCCCCCCCc
Q 025292 138 YAPYVTEFSDFVLHGCSFDPIEQTSSKCDIT 168 (255)
Q Consensus 138 ~aPf~a~~~~v~v~~c~~~~~~~~~~~C~~~ 168 (255)
.+|.+|.||||||++-..... -.|.+.
T Consensus 439 ~FP~~M~IDYVRVYQ~~~~~~----vgCDP~ 465 (504)
T PF03935_consen 439 CFPATMRIDYVRVYQPEDAIN----VGCDPP 465 (504)
T ss_pred cccceEEEeEEEEeccCCCCe----eeeCCC
Confidence 588999999999987643321 368754
No 18
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=91.53 E-value=0.51 Score=42.64 Aligned_cols=66 Identities=17% Similarity=0.365 Sum_probs=42.0
Q ss_pred eEEEEEeecCCC-----C-------C-CCCCceEE-EEeCCCCCCCcEEEEeEEc-CCcc----cCCcceeeecCC-CCC
Q 025292 12 FTFGLQMSNGDM-----F-------E-KNHDEIDF-EFLGNIRGKDWRIQTNIYG-NGST----SIGREERYNLWF-DPS 71 (255)
Q Consensus 12 ~v~AFwl~s~~~-----~-------~-~~~dEIDi-E~lG~~~g~p~~vqTNv~~-~G~~----~~~r~~~~~l~f-Dps 71 (255)
-.||+||++..+ | | ..|+|.|| |+|.... . .+-+++|. +|.. .++... .| -|+
T Consensus 122 DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g~--~-k~~St~H~~qG~~~~~~g~G~~~----yf~RPt 194 (235)
T PF10287_consen 122 DMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSGD--D-KLKSTFHDYQGTDDINGGGGSSD----YFKRPT 194 (235)
T ss_pred CcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCCC--c-eeEEEEecccCccccCCCCCCCC----cccCCC
Confidence 369999998754 2 3 36999998 9997643 2 56677775 4431 111111 13 267
Q ss_pred CCcEEEEEEEcCC
Q 025292 72 DDFHQYSILWTDS 84 (255)
Q Consensus 72 ~dFH~Y~IdWtp~ 84 (255)
+..-++.|.++.+
T Consensus 195 ~~~~k~aVifd~~ 207 (235)
T PF10287_consen 195 SGTMKVAVIFDSS 207 (235)
T ss_pred CCCeEEEEEEcCC
Confidence 7888888888643
No 19
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=91.35 E-value=0.38 Score=42.10 Aligned_cols=28 Identities=29% Similarity=0.724 Sum_probs=24.9
Q ss_pred CCcEEEEEEEcC--CeEEEEECCEEEEEEe
Q 025292 72 DDFHQYSILWTD--SQIIFYIDGIPIREFK 99 (255)
Q Consensus 72 ~dFH~Y~IdWtp--~~I~fyVDG~~vr~~~ 99 (255)
.+||.|.|...| ..-.|||||++|.+..
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 579999999988 8899999999999863
No 20
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=90.15 E-value=1.3 Score=34.47 Aligned_cols=69 Identities=13% Similarity=0.323 Sum_probs=42.0
Q ss_pred CCCCcEEEEEEEcCCeEEEEECCEEEEEEeecCCCCCCCCCCceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeEEE
Q 025292 70 PSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFV 149 (255)
Q Consensus 70 ps~dFH~Y~IdWtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~v~ 149 (255)
+...+|..++-|....+.+||||+++.+....... ...+..++ -.|++. ....+|...+++|+
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~-~~~~~~~~------~iG~~~----------~~~~~~~g~i~~~~ 145 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNI-SLNSNGPL------FIGGSG----------GGSSPFNGYIDDLR 145 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESSS-STTSCCEE------EESS-S----------TT--B-EEEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCc-CCCCcceE------EEeecC----------CCCCceEEEEEEEE
Confidence 35899999999999999999999998777543210 01112222 123222 23678999999999
Q ss_pred Eeeecc
Q 025292 150 LHGCSF 155 (255)
Q Consensus 150 v~~c~~ 155 (255)
|...+-
T Consensus 146 i~~~aL 151 (157)
T PF13385_consen 146 IYNRAL 151 (157)
T ss_dssp EESS--
T ss_pred EECccC
Confidence 976543
No 21
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=89.82 E-value=3.5 Score=33.07 Aligned_cols=72 Identities=10% Similarity=0.182 Sum_probs=46.9
Q ss_pred CCCCCCcEEEEEEEcC--CeEEEEECCEEEEEEeecCCCCCCCC-CCceeEEEEeecCCCCcCCCCccccCCCcccEEEE
Q 025292 68 FDPSDDFHQYSILWTD--SQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTE 144 (255)
Q Consensus 68 fDps~dFH~Y~IdWtp--~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~ 144 (255)
.++...+|...+-++. .+|++||||+++.+.... ..+ ..|+.|-..... ++ ....+|.-.
T Consensus 57 ~~~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~ 119 (133)
T smart00560 57 ADWIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGR 119 (133)
T ss_pred CCCCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEE
Confidence 3445889999999998 789999999998755321 122 333333211111 11 124579999
Q ss_pred EeEEEEeeeccC
Q 025292 145 FSDFVLHGCSFD 156 (255)
Q Consensus 145 ~~~v~v~~c~~~ 156 (255)
|++|+|..++.+
T Consensus 120 Idevriy~~aLs 131 (133)
T smart00560 120 LDEVRVYNRALT 131 (133)
T ss_pred eeEEEEeccccC
Confidence 999999987643
No 22
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=86.13 E-value=10 Score=32.98 Aligned_cols=77 Identities=16% Similarity=0.325 Sum_probs=45.3
Q ss_pred CCCCcEEEEEEEc--CCeEEEEECCEEEEEEeecCCCCCCCCCCceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeE
Q 025292 70 PSDDFHQYSILWT--DSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSD 147 (255)
Q Consensus 70 ps~dFH~Y~IdWt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~ 147 (255)
....+|...+.|+ ...+.+||||+++.. ..-..+..++. ...|+|.- .-+.+ ||. .+. ...|.-.+++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~--~~~~~g~~i~~-~G~lvlGq-~qd~~---gg~--f~~-~~~f~G~i~~ 157 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR--KGLAKGYTVKP-GGSIILGQ-EQDSY---GGG--FDA-TQSFVGEIGD 157 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc--ccccCCcEECC-CCEEEEEe-cccCC---CCC--CCC-CcceeEEEee
Confidence 3578999999998 446999999998621 11111222332 22233332 12233 341 333 4468999999
Q ss_pred EEEeeeccC
Q 025292 148 FVLHGCSFD 156 (255)
Q Consensus 148 v~v~~c~~~ 156 (255)
|+|...+-+
T Consensus 158 v~iw~~~Ls 166 (206)
T smart00159 158 LNMWDSVLS 166 (206)
T ss_pred eEEecccCC
Confidence 999776544
No 23
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=79.38 E-value=4.6 Score=33.46 Aligned_cols=33 Identities=18% Similarity=0.540 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEEEcCCeEEEEECCEEEEEEeec
Q 025292 69 DPSDDFHQYSILWTDSQIIFYIDGIPIREFKRT 101 (255)
Q Consensus 69 Dps~dFH~Y~IdWtp~~I~fyVDG~~vr~~~~~ 101 (255)
.+..++|++.|.-..++|+.+|||++|.++...
T Consensus 124 ~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 124 IPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp --TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred CCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 357899999999999999999999999999864
No 24
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=78.48 E-value=15 Score=31.61 Aligned_cols=77 Identities=14% Similarity=0.246 Sum_probs=46.1
Q ss_pred CCCCcEEEEEEEc--CCeEEEEECCEEEEEEeecCCCCCCCCCCceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeE
Q 025292 70 PSDDFHQYSILWT--DSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSD 147 (255)
Q Consensus 70 ps~dFH~Y~IdWt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~ 147 (255)
....+|...+.|+ ...+.+||||+++..-. -..+..++... .|+|.-- -..+ ||. .+. .-.|.-.+++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~~~g-~l~lG~~-q~~~---gg~--~~~-~~~f~G~I~~ 157 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVGPGG-SIILGQE-QDSY---GGG--FDA-TQSFVGEISD 157 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEECCCC-eEEEeec-ccCC---CCC--CCC-CcceEEEEce
Confidence 4678999999998 44699999999875443 11122333222 2333210 0112 342 332 4479999999
Q ss_pred EEEeeeccC
Q 025292 148 FVLHGCSFD 156 (255)
Q Consensus 148 v~v~~c~~~ 156 (255)
|+|...+-+
T Consensus 158 v~iw~~~Ls 166 (201)
T cd00152 158 VNMWDSVLS 166 (201)
T ss_pred eEEEcccCC
Confidence 999776544
No 25
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=76.08 E-value=13 Score=29.24 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=42.2
Q ss_pred CCCcEEEEEEEcCCeEEEEECCEEEEEEeecCCCCCCCCCCceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeEEEE
Q 025292 71 SDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVL 150 (255)
Q Consensus 71 s~dFH~Y~IdWtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~v~v 150 (255)
...||.-.|.+....++.+|||..+.+..... ... -+.....|..||.-....+ .......+|.--+++|+|
T Consensus 79 dg~Wh~v~i~~~~~~~~l~VD~~~~~~~~~~~--~~~----~~~~~~~~~iGg~~~~~~~--~~~~~~~~F~Gci~~v~i 150 (151)
T cd00110 79 DGQWHSVSVERNGRSVTLSVDGERVVESGSPG--GSA----LLNLDGPLYLGGLPEDLKS--PGLPVSPGFVGCIRDLKV 150 (151)
T ss_pred CCCEEEEEEEECCCEEEEEECCccEEeeeCCC--Cce----eecCCCCeEEcCCCCchhc--ccccccCCCceEeeEeEe
Confidence 45799999999999999999998543333211 100 1222223444554221111 112245678888888876
Q ss_pred e
Q 025292 151 H 151 (255)
Q Consensus 151 ~ 151 (255)
.
T Consensus 151 n 151 (151)
T cd00110 151 N 151 (151)
T ss_pred C
Confidence 3
No 26
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=59.97 E-value=1e+02 Score=26.64 Aligned_cols=76 Identities=21% Similarity=0.441 Sum_probs=40.7
Q ss_pred CCCcEEEEEEEcC--CeEEEEECCEEEEEEeecCCCCCCCCCCceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeEE
Q 025292 71 SDDFHQYSILWTD--SQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDF 148 (255)
Q Consensus 71 s~dFH~Y~IdWtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~v 148 (255)
...+|.+.+-|+. ..+.+||||+...... -..|...|.... |+|.-- - + .-||. .| ..-.|.-++.+|
T Consensus 83 ~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~~~g~~i~~gG~-~vlGQe-Q-d--~~gG~--fd-~~q~F~G~i~~~ 152 (195)
T PF00354_consen 83 DGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--LATGHSIPGGGT-LVLGQE-Q-D--SYGGG--FD-ESQAFVGEISDF 152 (195)
T ss_dssp TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--SSTT--B-SSEE-EEESS--B-S--BTTBT--CS-GGGB--EEEEEE
T ss_pred CCCcEEEEEEEecCCcEEEEEECCEeccccc--ccCCceECCCCE-EEECcc-c-c--ccCCC--cC-CccEeeEEEece
Confidence 5789999999976 6799999999543322 123444443322 333211 1 1 12342 34 345899999999
Q ss_pred EEeeeccC
Q 025292 149 VLHGCSFD 156 (255)
Q Consensus 149 ~v~~c~~~ 156 (255)
+|...+-+
T Consensus 153 ~iWd~vLs 160 (195)
T PF00354_consen 153 NIWDRVLS 160 (195)
T ss_dssp EEESS---
T ss_pred EEEeeeCC
Confidence 99766544
No 27
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=56.44 E-value=15 Score=31.29 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=26.7
Q ss_pred CCCcEEEEEEEcCCeEEEEECCEEEEEEe
Q 025292 71 SDDFHQYSILWTDSQIIFYIDGIPIREFK 99 (255)
Q Consensus 71 s~dFH~Y~IdWtp~~I~fyVDG~~vr~~~ 99 (255)
...||.-+|.+..+.+++|||++++.+..
T Consensus 116 dg~WH~lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 116 DGQWHKLALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred cCCceEEEEEEeCCEEEEEECCcccccee
Confidence 56899999999999999999999998875
No 28
>smart00282 LamG Laminin G domain.
Probab=50.29 E-value=70 Score=24.89 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=41.4
Q ss_pred CCCcEEEEEEEcCCeEEEEECCEEEEEEeecCCCCCCCCCCceeEEEEeecCCCCcCCCCc-cccCCCcccEEEEEeEEE
Q 025292 71 SDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGK-YRVNYKYAPYVTEFSDFV 149 (255)
Q Consensus 71 s~dFH~Y~IdWtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~-~~id~s~aPf~a~~~~v~ 149 (255)
...||.-.|.-....++.+|||......... +. ...+.+-..|..||--. +. ....-...+|.--+++|+
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~~~~---~~---~~~l~~~~~l~iGG~p~---~~~~~~~~~~~~F~GCi~~v~ 131 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSGESP---GG---LTILNLDGPLYLGGLPE---DLKLPPLLVTPGFRGCIRNLK 131 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccEECC---CC---ceEEecCCCcEEccCCc---hhcccccccCCCCeeEeeEEE
Confidence 3579999999999999999999755433321 10 11122223455565432 10 001113456777777777
Q ss_pred Ee
Q 025292 150 LH 151 (255)
Q Consensus 150 v~ 151 (255)
+.
T Consensus 132 in 133 (135)
T smart00282 132 VN 133 (135)
T ss_pred EC
Confidence 65
No 29
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=48.70 E-value=85 Score=27.01 Aligned_cols=73 Identities=11% Similarity=0.317 Sum_probs=45.7
Q ss_pred cCCCCCCCcEEEEE--EEcC---CeEEEEECCEEEEEEeecCCCCCCCC-CCceeEEEEeecCCCCcCCCCccccCCCcc
Q 025292 66 LWFDPSDDFHQYSI--LWTD---SQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYA 139 (255)
Q Consensus 66 l~fDps~dFH~Y~I--dWtp---~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~gg~Wat~GG~~~id~s~a 139 (255)
+...+...+|.+.| .|++ ..|..++||+++..+.... .++ .+..|+.+.|.-.+ |....+ ....
T Consensus 146 ~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~~-~~~~~~----~~~~- 215 (224)
T PF14099_consen 146 LGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRSG-WKNDPN----ESDT- 215 (224)
T ss_dssp CCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEHC-CHHHSC------SS-
T ss_pred CCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECCC-CcCCCc----cccc-
Confidence 33344588999876 5886 6799999999999998732 244 47788888888543 221111 1111
Q ss_pred cEEEEEeEEEE
Q 025292 140 PYVTEFSDFVL 150 (255)
Q Consensus 140 Pf~a~~~~v~v 150 (255)
..+||+|++
T Consensus 216 --~vy~D~v~~ 224 (224)
T PF14099_consen 216 --QVYYDNVRI 224 (224)
T ss_dssp ---EEEEEEE-
T ss_pred --EEEeccccC
Confidence 188998875
No 30
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=45.08 E-value=1e+02 Score=27.67 Aligned_cols=59 Identities=20% Similarity=0.460 Sum_probs=38.0
Q ss_pred CCcEEEEEEEcCCeEEEEECCEEEEEEeecCCCCCCCCCCceeEEEEeecCCCCcCCCCccccCCC-cccEEEEEeEEEE
Q 025292 72 DDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYK-YAPYVTEFSDFVL 150 (255)
Q Consensus 72 ~dFH~Y~IdWtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~id~s-~aPf~a~~~~v~v 150 (255)
..|+.-.|.=....|.|.|||.+|..+...... ..|- -.+|+ |-.. =+|..|.|++++|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~~--~gPv----------------l~~G~--IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGST--YGPV----------------LRGGR--IGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SSS--SSS-------------------SBE--EEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCCc--cCCc----------------ccCcE--eeeeccchhhhhhccccC
Confidence 367777888999999999999999999764311 1230 01342 4343 3899999999986
No 31
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=42.19 E-value=30 Score=36.05 Aligned_cols=52 Identities=21% Similarity=0.483 Sum_probs=40.5
Q ss_pred CCCcEEEEEEEcCCeEEEEECCEEEEEEeecCCCCCCCCCCceeEEEEeecCCCCc
Q 025292 71 SDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWA 126 (255)
Q Consensus 71 s~dFH~Y~IdWtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wa 126 (255)
-++||.|.+.-+--.++.||||+.+.-..-. ..||-.|..+-.-|=+|.=|-
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwplHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWPLHPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec----cCCccCcccccceeEEeeecc
Confidence 4789999999987779999999876443322 468977777777777788887
No 32
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=42.07 E-value=1.4e+02 Score=22.20 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=48.8
Q ss_pred CCCcEEEEEEEcCCeEEEEECCEEEEEEeecCCCCCCCCCCceeEEEEeecCCCCcCCCCccccCCCcccEEEEEeEEEE
Q 025292 71 SDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVL 150 (255)
Q Consensus 71 s~dFH~Y~IdWtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~~v~v 150 (255)
...||.-.|.=....++..||+............ ..-+.....++.||.-...... ..-....|.--+++++|
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~-----~~~~~~~~~l~iGg~~~~~~~~--~~~~~~~f~Gci~~l~v 125 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSS-----SDSLDPDGSLYIGGLPESNQPS--GSVDTPGFVGCIRDLRV 125 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSSTT-----HHCBESEEEEEESSTTTTCTCT--TSSTTSB-EEEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEeccccc-----eecccCCCCEEEecccCccccc--cccCCCCcEEEcCeEEE
Confidence 5679999999999999999999998887653211 0023334557778765421110 11116678888999888
Q ss_pred ee
Q 025292 151 HG 152 (255)
Q Consensus 151 ~~ 152 (255)
.+
T Consensus 126 ng 127 (128)
T PF02210_consen 126 NG 127 (128)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 33
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=32.64 E-value=2.5e+02 Score=22.10 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=46.6
Q ss_pred CCCCceEEEEeCC--CCCCCcEEEEeEEcCC-c---------ccCCccee-eecCCCCCCCcEEEEEEEcCCeEEEEECC
Q 025292 26 KNHDEIDFEFLGN--IRGKDWRIQTNIYGNG-S---------TSIGREER-YNLWFDPSDDFHQYSILWTDSQIIFYIDG 92 (255)
Q Consensus 26 ~~~dEIDiE~lG~--~~g~p~~vqTNv~~~G-~---------~~~~r~~~-~~l~fDps~dFH~Y~IdWtp~~I~fyVDG 92 (255)
+..+.+.|.++.. +......+|.|..-.. . +..+.|++ ...+|.+...| +-.|.=+++....+|||
T Consensus 24 ~~~~~f~inl~~~~~~~~~~i~lH~~~rf~~~~~iv~Ns~~~g~Wg~Ee~~~~~pf~~g~~F-~i~I~~~~~~f~I~vng 102 (133)
T PF00337_consen 24 PDAKRFSINLQTGPNDPDDDIALHFNPRFDEQNVIVRNSRINGKWGQEERESPFPFQPGQPF-EIRIRVEEDGFKIYVNG 102 (133)
T ss_dssp TTSSBEEEEEEES-STTTTEEEEEEEEECTTEEEEEEEEEETTEE-SEEEESSTSSTTTSEE-EEEEEEESSEEEEEETT
T ss_pred CCCCEEEEEecCCCcCCCCCEEEEEEEEeCCCceEEEeceECCEeccceeeeeeeecCCceE-EEEEEEecCeeEEEECC
Confidence 3457777777755 2223345565553322 0 11456666 45566665554 67788889999999999
Q ss_pred EEEEEEee
Q 025292 93 IPIREFKR 100 (255)
Q Consensus 93 ~~vr~~~~ 100 (255)
+.+..+..
T Consensus 103 ~~~~~F~~ 110 (133)
T PF00337_consen 103 KHFCSFPH 110 (133)
T ss_dssp EEEEEEE-
T ss_pred eEEEEeeC
Confidence 99999975
No 34
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=31.06 E-value=60 Score=24.09 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=23.0
Q ss_pred eEEEEECCEEEEEEeecCCCCCCCC-CCceeEEEEeec
Q 025292 85 QIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWD 121 (255)
Q Consensus 85 ~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~ 121 (255)
.+.|||||+++.+..... ...|+ ..|..-.|.+=+
T Consensus 44 ~~~W~vdg~~~g~~~~~~--~~~~~~~~~G~h~l~vvD 79 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGH--QLFWQPDRPGEHTLTVVD 79 (89)
T ss_pred cEEEEECCEEcccCCCCC--eEEeCCCCCeeEEEEEEc
Confidence 678999999996655432 12354 477777776643
No 35
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=30.06 E-value=1.6e+02 Score=23.25 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=46.1
Q ss_pred CCCceEEEEeCCCCCCCcEEEEeEEcCC-c--------ccCCcceeee-cCCCCCCCcEEEEEEEcCCeEEEEECCEEEE
Q 025292 27 NHDEIDFEFLGNIRGKDWRIQTNIYGNG-S--------TSIGREERYN-LWFDPSDDFHQYSILWTDSQIIFYIDGIPIR 96 (255)
Q Consensus 27 ~~dEIDiE~lG~~~g~p~~vqTNv~~~G-~--------~~~~r~~~~~-l~fDps~dFH~Y~IdWtp~~I~fyVDG~~vr 96 (255)
..+.+-|.+..... ...+|.|+--.. . +.++.|++.. .+|-+-+.| .-.|.=+++....+|||+.+.
T Consensus 25 ~~~~f~Inl~~~~~--~i~lH~n~rf~~~~IV~Ns~~~g~Wg~Eer~~~~pf~~g~~F-~l~i~~~~~~f~i~vng~~~~ 101 (127)
T cd00070 25 NAKRFSINLGTGSS--DIALHFNPRFDENVIVRNSFLNGNWGPEERSGGFPFQPGQPF-ELTILVEEDKFQIFVNGQHFF 101 (127)
T ss_pred CCCEEEEEEecCCC--CEEEEEeeeCCCCEEEEcCCCCCEecHhhccCCCCCCCCCeE-EEEEEEcCCEEEEEECCEeEE
Confidence 45677777775432 335666553211 0 1245666654 566654444 889999999999999999998
Q ss_pred EEee
Q 025292 97 EFKR 100 (255)
Q Consensus 97 ~~~~ 100 (255)
.+..
T Consensus 102 ~F~~ 105 (127)
T cd00070 102 SFPH 105 (127)
T ss_pred EecC
Confidence 8863
No 36
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=28.49 E-value=3.5e+02 Score=23.72 Aligned_cols=71 Identities=13% Similarity=0.281 Sum_probs=39.9
Q ss_pred CCcEEEEEEEc--CCeEEEEECCEEEEEEeecCCCCCCCC-C--CceeEEEEeecCCCCcCCCCccccCCCcccEEEEEe
Q 025292 72 DDFHQYSILWT--DSQIIFYIDGIPIREFKRTASMGGDFP-A--KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFS 146 (255)
Q Consensus 72 ~dFH~Y~IdWt--p~~I~fyVDG~~vr~~~~~~~~g~~~P-~--~Pm~l~lnlW~gg~Wat~GG~~~id~s~aPf~a~~~ 146 (255)
..||+=++.=+ .....+||||.++.++.... ..|- + .+=.+.+ |+. -++| -...||.-.|+
T Consensus 103 ~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n~~~i----G~t--~R~g-----~~~y~f~G~I~ 168 (190)
T PF02973_consen 103 VTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLNSVQI----GGT--NRAG-----SNAYPFNGTID 168 (190)
T ss_dssp ES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT--EEEE----SSE--EETT-----EEES--EEEEE
T ss_pred ceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCceEEE----cce--EeCC-----CceecccceEE
Confidence 45788777775 66799999998888886542 2232 1 1112222 221 1123 23679999999
Q ss_pred EEEEeeeccC
Q 025292 147 DFVLHGCSFD 156 (255)
Q Consensus 147 ~v~v~~c~~~ 156 (255)
+|+|+.++.+
T Consensus 169 ~l~iYn~aLs 178 (190)
T PF02973_consen 169 NLKIYNRALS 178 (190)
T ss_dssp EEEEESS---
T ss_pred EEEEEcCcCC
Confidence 9999887654
No 37
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=25.39 E-value=1.1e+02 Score=23.86 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=24.5
Q ss_pred CCCCcEEEEEEEcCCeEEEEECCEEEEEEe
Q 025292 70 PSDDFHQYSILWTDSQIIFYIDGIPIREFK 99 (255)
Q Consensus 70 ps~dFH~Y~IdWtp~~I~fyVDG~~vr~~~ 99 (255)
|.++-|++.+. .-+.++++|||++|-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 36788999999 888899999999996665
No 38
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=24.89 E-value=3.2e+02 Score=20.91 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=33.4
Q ss_pred CCCcEEEEEEEcCCeEEEEECCE--EEEEEeecCCCCCCCCCCceeEEEEeec
Q 025292 71 SDDFHQYSILWTDSQIIFYIDGI--PIREFKRTASMGGDFPAKPMSLYATIWD 121 (255)
Q Consensus 71 s~dFH~Y~IdWtp~~I~fyVDG~--~vr~~~~~~~~g~~~P~~Pm~l~lnlW~ 121 (255)
..+|..|.|.|.-..|.+..||. |+-++...+ |-...|+=++-|.
T Consensus 51 ~~e~~~fwI~~~~G~I~vg~~g~~~pfl~~~Dp~------~~~v~yvGft~w~ 97 (102)
T PF12248_consen 51 PSEFRMFWISWRDGTIRVGRGGEDEPFLEWTDPE------PIPVNYVGFTGWG 97 (102)
T ss_pred CCccEEEEEEECCCEEEEEECCCccEEEEEECCC------CCcccEEEEecCC
Confidence 67899999999999999999987 777776321 3334455556554
No 39
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=21.98 E-value=32 Score=34.57 Aligned_cols=20 Identities=5% Similarity=0.014 Sum_probs=15.0
Q ss_pred CceeecCC---CCceEEEEEeecC
Q 025292 1 MCLCIDEE---LGIFTFGLQMSNG 21 (255)
Q Consensus 1 ~~~~~~~G---~G~~v~AFwl~s~ 21 (255)
++++||.. .|+ ||||||+++
T Consensus 204 ~~~~lPg~~~~~G~-WP~~W~mGN 226 (504)
T PF03935_consen 204 VSASLPGSPDVSGL-WPAFWTMGN 226 (504)
T ss_pred EEEECCCCCcCCCc-Cchhhhccc
Confidence 35677653 576 999999986
Done!