Query 025293
Match_columns 255
No_of_seqs 388 out of 3027
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.6E-40 3.5E-45 271.6 9.5 169 76-254 1-182 (240)
2 COG1116 TauB ABC-type nitrate/ 100.0 3.5E-40 7.6E-45 276.2 10.6 170 76-255 2-177 (248)
3 COG1125 OpuBA ABC-type proline 100.0 2.4E-38 5.1E-43 264.2 8.8 168 77-254 1-181 (309)
4 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.2E-37 6.9E-42 261.2 11.2 171 75-254 2-185 (254)
5 COG1135 AbcC ABC-type metal io 100.0 3.2E-37 6.8E-42 264.1 10.4 172 77-254 1-187 (339)
6 COG1136 SalX ABC-type antimicr 100.0 6.8E-37 1.5E-41 255.6 11.1 172 77-254 1-188 (226)
7 COG3839 MalK ABC-type sugar tr 100.0 4.2E-37 9E-42 270.9 10.4 169 75-253 1-178 (338)
8 COG1124 DppF ABC-type dipeptid 100.0 7E-37 1.5E-41 254.5 10.5 175 75-254 1-187 (252)
9 COG2884 FtsE Predicted ATPase 100.0 1.7E-36 3.7E-41 243.1 11.1 169 77-254 1-183 (223)
10 COG1131 CcmA ABC-type multidru 100.0 1.6E-36 3.5E-41 266.2 11.8 170 75-254 2-182 (293)
11 COG3842 PotA ABC-type spermidi 100.0 9.6E-37 2.1E-41 269.9 7.8 170 75-254 3-182 (352)
12 COG1127 Ttg2A ABC-type transpo 100.0 3E-36 6.5E-41 250.0 10.1 170 75-254 6-191 (263)
13 COG1120 FepC ABC-type cobalami 100.0 6.7E-36 1.5E-40 254.2 11.1 168 77-254 2-184 (258)
14 COG3638 ABC-type phosphate/pho 100.0 6.3E-36 1.4E-40 247.5 9.4 170 76-254 2-193 (258)
15 COG1122 CbiO ABC-type cobalt t 100.0 5.2E-35 1.1E-39 247.9 11.6 171 76-254 2-184 (235)
16 COG4555 NatA ABC-type Na+ tran 100.0 1.8E-35 3.8E-40 239.3 7.8 168 77-253 1-178 (245)
17 PRK13537 nodulation ABC transp 100.0 1.6E-34 3.4E-39 255.4 11.3 169 76-254 6-184 (306)
18 COG1117 PstB ABC-type phosphat 100.0 2.2E-34 4.9E-39 234.9 11.1 169 75-254 5-195 (253)
19 PRK13536 nodulation factor exp 100.0 2E-34 4.3E-39 257.8 11.4 170 75-254 39-218 (340)
20 PRK11650 ugpC glycerol-3-phosp 100.0 1.6E-34 3.4E-39 259.9 10.2 169 75-253 1-179 (356)
21 TIGR02314 ABC_MetN D-methionin 100.0 2E-34 4.4E-39 257.6 10.7 172 77-254 1-186 (343)
22 PRK11432 fbpC ferric transport 100.0 2.9E-34 6.4E-39 257.6 10.8 170 74-253 3-181 (351)
23 COG1118 CysA ABC-type sulfate/ 100.0 2.4E-34 5.2E-39 246.0 9.5 167 77-253 2-182 (345)
24 TIGR00960 3a0501s02 Type II (G 100.0 2.7E-34 6E-39 241.7 9.7 169 77-253 1-183 (216)
25 TIGR03265 PhnT2 putative 2-ami 100.0 4.9E-34 1.1E-38 256.4 10.8 170 75-254 2-180 (353)
26 TIGR01288 nodI ATP-binding ABC 100.0 9.3E-34 2E-38 250.3 10.7 168 76-253 3-180 (303)
27 PRK11000 maltose/maltodextrin 100.0 8.6E-34 1.9E-38 256.5 10.6 169 75-253 1-178 (369)
28 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 9.7E-34 2.1E-38 238.7 9.8 168 78-253 1-185 (218)
29 cd03259 ABC_Carb_Solutes_like 100.0 1E-33 2.2E-38 237.8 9.6 166 78-253 1-175 (213)
30 cd03265 ABC_DrrA DrrA is the A 100.0 1.4E-33 3E-38 238.1 10.3 166 78-253 1-176 (220)
31 COG4525 TauB ABC-type taurine 100.0 9.7E-34 2.1E-38 228.3 8.8 173 75-255 1-179 (259)
32 PRK09452 potA putrescine/sperm 100.0 1.3E-33 2.8E-38 255.3 10.6 172 73-254 10-190 (375)
33 TIGR02673 FtsE cell division A 100.0 1.6E-33 3.4E-38 236.7 10.2 168 77-253 1-182 (214)
34 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.2E-33 2.6E-38 238.5 9.3 170 78-253 1-176 (220)
35 COG4152 ABC-type uncharacteriz 100.0 9.9E-34 2.1E-38 235.2 7.8 167 77-253 2-175 (300)
36 PRK11629 lolD lipoprotein tran 100.0 3.2E-33 6.9E-38 238.0 11.0 172 76-253 4-190 (233)
37 TIGR03258 PhnT 2-aminoethylpho 100.0 2.2E-33 4.8E-38 252.7 9.9 167 77-253 5-182 (362)
38 PRK11153 metN DL-methionine tr 100.0 3E-33 6.5E-38 250.8 10.5 170 77-254 1-186 (343)
39 cd03261 ABC_Org_Solvent_Resist 100.0 2.6E-33 5.7E-38 238.7 9.6 166 78-253 1-181 (235)
40 cd03269 ABC_putative_ATPase Th 100.0 3.3E-33 7.2E-38 234.2 10.0 166 78-253 1-173 (210)
41 PRK11248 tauB taurine transpor 100.0 3.4E-33 7.4E-38 241.0 10.1 167 77-253 1-173 (255)
42 TIGR02211 LolD_lipo_ex lipopro 100.0 4.1E-33 8.9E-38 235.3 10.3 171 77-253 1-186 (221)
43 PRK10584 putative ABC transpor 100.0 6E-33 1.3E-37 235.4 11.3 173 75-253 4-191 (228)
44 cd03266 ABC_NatA_sodium_export 100.0 3.2E-33 7E-38 235.5 9.6 171 77-253 1-181 (218)
45 PRK11607 potG putrescine trans 100.0 4.1E-33 8.9E-38 252.2 10.9 169 75-253 17-194 (377)
46 TIGR03522 GldA_ABC_ATP gliding 100.0 3.6E-33 7.8E-38 246.3 10.3 168 77-254 2-179 (301)
47 cd03263 ABC_subfamily_A The AB 100.0 3.9E-33 8.4E-38 235.3 9.8 168 78-253 1-178 (220)
48 PRK11022 dppD dipeptide transp 100.0 6.9E-33 1.5E-37 246.8 11.7 179 75-254 1-199 (326)
49 cd03225 ABC_cobalt_CbiO_domain 100.0 4.1E-33 8.8E-38 233.7 9.1 167 79-253 1-179 (211)
50 COG1137 YhbG ABC-type (unclass 100.0 6.2E-34 1.3E-38 230.1 3.9 170 75-254 2-185 (243)
51 cd03258 ABC_MetN_methionine_tr 100.0 6.4E-33 1.4E-37 236.0 10.4 169 77-253 1-185 (233)
52 cd03301 ABC_MalK_N The N-termi 100.0 5.6E-33 1.2E-37 233.2 9.8 166 78-253 1-175 (213)
53 PRK13637 cbiO cobalt transport 100.0 7.1E-33 1.5E-37 242.8 10.8 172 77-254 2-190 (287)
54 cd03226 ABC_cobalt_CbiO_domain 100.0 6.1E-33 1.3E-37 231.8 9.8 163 79-254 1-172 (205)
55 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7.8E-33 1.7E-37 236.0 10.5 167 77-253 1-177 (236)
56 cd03296 ABC_CysA_sulfate_impor 100.0 9.8E-33 2.1E-37 235.8 10.3 168 77-254 2-182 (239)
57 PRK10908 cell division protein 100.0 1.1E-32 2.3E-37 233.1 10.2 167 77-253 1-182 (222)
58 PRK11264 putative amino-acid A 100.0 1.7E-32 3.8E-37 235.7 11.5 170 75-254 1-190 (250)
59 cd03235 ABC_Metallic_Cations A 100.0 7.3E-33 1.6E-37 232.6 8.9 167 79-253 1-177 (213)
60 cd03218 ABC_YhbG The ABC trans 100.0 1.1E-32 2.4E-37 234.3 10.0 167 78-254 1-179 (232)
61 PRK11308 dppF dipeptide transp 100.0 1.8E-32 4E-37 244.1 11.8 176 75-254 3-200 (327)
62 PRK10851 sulfate/thiosulfate t 100.0 1.1E-32 2.4E-37 247.6 10.4 168 77-254 2-182 (353)
63 PRK15079 oligopeptide ABC tran 100.0 1.5E-32 3.2E-37 245.0 10.8 176 75-254 6-207 (331)
64 cd03292 ABC_FtsE_transporter F 100.0 1.3E-32 2.7E-37 231.2 9.6 167 78-253 1-181 (214)
65 PRK11831 putative ABC transpor 100.0 1.9E-32 4.1E-37 238.1 11.0 169 75-253 5-188 (269)
66 cd03257 ABC_NikE_OppD_transpor 100.0 2.3E-32 5.1E-37 231.5 11.3 171 77-253 1-190 (228)
67 PRK09536 btuD corrinoid ABC tr 100.0 1.7E-32 3.7E-37 249.5 10.9 170 75-254 1-185 (402)
68 PRK13538 cytochrome c biogenes 100.0 2E-32 4.3E-37 228.7 10.4 164 77-253 1-174 (204)
69 TIGR03608 L_ocin_972_ABC putat 100.0 1.5E-32 3.3E-37 229.3 9.7 164 80-253 1-179 (206)
70 PRK13651 cobalt transporter AT 100.0 1.6E-32 3.5E-37 242.4 10.1 172 77-254 2-211 (305)
71 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.7E-32 3.7E-37 234.7 10.0 167 78-253 1-180 (242)
72 PRK10070 glycine betaine trans 100.0 2.5E-32 5.4E-37 248.3 11.6 152 96-253 43-209 (400)
73 cd03264 ABC_drug_resistance_li 100.0 1.6E-32 3.6E-37 230.1 9.7 166 78-254 1-176 (211)
74 cd03262 ABC_HisP_GlnQ_permease 100.0 1.7E-32 3.6E-37 230.3 9.6 167 78-254 1-181 (213)
75 cd03268 ABC_BcrA_bacitracin_re 100.0 2.4E-32 5.2E-37 228.7 10.6 162 78-253 1-171 (208)
76 PRK13641 cbiO cobalt transport 100.0 2.1E-32 4.5E-37 239.9 10.7 172 77-254 2-191 (287)
77 PRK13634 cbiO cobalt transport 100.0 1.8E-32 3.9E-37 240.7 10.3 171 77-253 2-190 (290)
78 COG0410 LivF ABC-type branched 100.0 1.3E-32 2.7E-37 227.6 8.5 171 76-254 2-182 (237)
79 TIGR02315 ABC_phnC phosphonate 100.0 1.7E-32 3.7E-37 234.7 9.6 167 77-253 1-190 (243)
80 PRK13638 cbiO cobalt transport 100.0 1.8E-32 3.9E-37 238.4 9.9 168 77-254 1-182 (271)
81 PRK13643 cbiO cobalt transport 100.0 2.1E-32 4.6E-37 240.0 10.0 172 77-254 1-190 (288)
82 PRK13539 cytochrome c biogenes 100.0 2.9E-32 6.2E-37 228.2 10.3 163 77-253 2-172 (207)
83 PRK10895 lipopolysaccharide AB 100.0 2.6E-32 5.7E-37 233.4 10.1 169 75-253 1-182 (241)
84 PRK13652 cbiO cobalt transport 100.0 3.5E-32 7.5E-37 237.4 11.0 170 75-253 1-182 (277)
85 PRK13647 cbiO cobalt transport 100.0 2.2E-32 4.8E-37 238.3 9.8 170 76-254 3-184 (274)
86 cd03219 ABC_Mj1267_LivG_branch 100.0 2.5E-32 5.4E-37 232.7 9.8 166 78-253 1-188 (236)
87 cd03260 ABC_PstB_phosphate_tra 100.0 3E-32 6.5E-37 231.0 10.1 166 78-254 1-187 (227)
88 COG0411 LivG ABC-type branched 100.0 1.2E-32 2.6E-37 229.4 7.4 171 76-254 3-195 (250)
89 cd03256 ABC_PhnC_transporter A 100.0 3.9E-32 8.4E-37 232.1 10.4 167 78-253 1-189 (241)
90 TIGR01188 drrA daunorubicin re 100.0 2.3E-32 5E-37 241.3 9.3 160 85-254 1-170 (302)
91 PRK15093 antimicrobial peptide 100.0 5.1E-32 1.1E-36 241.7 11.6 179 75-254 1-204 (330)
92 TIGR00972 3a0107s01c2 phosphat 100.0 4.9E-32 1.1E-36 232.6 10.8 167 77-254 1-190 (247)
93 PRK13650 cbiO cobalt transport 100.0 3.9E-32 8.5E-37 237.3 10.0 171 76-253 3-185 (279)
94 PRK09473 oppD oligopeptide tra 100.0 7E-32 1.5E-36 240.6 11.7 177 74-254 9-207 (330)
95 PRK13635 cbiO cobalt transport 100.0 4.6E-32 9.9E-37 236.9 10.2 171 76-253 4-185 (279)
96 PRK09493 glnQ glutamine ABC tr 100.0 5E-32 1.1E-36 231.5 10.3 167 77-253 1-181 (240)
97 PRK13644 cbiO cobalt transport 100.0 3.5E-32 7.6E-37 237.0 9.4 168 77-253 1-181 (274)
98 cd03224 ABC_TM1139_LivF_branch 100.0 4.5E-32 9.8E-37 229.0 9.8 165 78-254 1-178 (222)
99 PRK11247 ssuB aliphatic sulfon 100.0 3.4E-32 7.4E-37 234.9 9.0 163 75-253 10-178 (257)
100 PRK15112 antimicrobial peptide 100.0 6.7E-32 1.4E-36 234.4 10.9 174 76-253 3-194 (267)
101 PRK13636 cbiO cobalt transport 100.0 5.8E-32 1.3E-36 236.7 10.5 170 76-254 4-187 (283)
102 PRK11124 artP arginine transpo 100.0 6.3E-32 1.4E-36 231.2 10.4 167 77-253 2-186 (242)
103 PRK14247 phosphate ABC transpo 100.0 9.2E-32 2E-36 231.2 11.4 170 75-254 1-192 (250)
104 PRK11701 phnK phosphonate C-P 100.0 1.1E-31 2.4E-36 231.8 11.9 170 76-253 5-196 (258)
105 PRK13548 hmuV hemin importer A 100.0 7.5E-32 1.6E-36 233.0 10.6 167 77-253 2-185 (258)
106 TIGR02769 nickel_nikE nickel i 100.0 1.1E-31 2.3E-36 232.9 11.2 171 77-253 2-195 (265)
107 PRK13631 cbiO cobalt transport 100.0 1.1E-31 2.4E-36 238.4 11.4 176 72-253 16-221 (320)
108 PRK10247 putative ABC transpor 100.0 1.9E-31 4.1E-36 226.0 12.2 165 76-253 6-182 (225)
109 TIGR02324 CP_lyasePhnL phospho 100.0 1.3E-31 2.8E-36 226.7 11.1 171 77-253 1-194 (224)
110 TIGR03411 urea_trans_UrtD urea 100.0 1.4E-31 3E-36 229.0 11.4 167 77-253 2-188 (242)
111 TIGR01189 ccmA heme ABC export 100.0 1.1E-31 2.4E-36 223.0 10.4 162 78-253 1-172 (198)
112 PRK13646 cbiO cobalt transport 100.0 7.7E-32 1.7E-36 236.2 9.8 171 77-253 2-190 (286)
113 cd03294 ABC_Pro_Gly_Bertaine T 100.0 9E-32 1.9E-36 233.9 10.2 165 79-253 26-205 (269)
114 TIGR03410 urea_trans_UrtE urea 100.0 7.9E-32 1.7E-36 228.9 9.5 163 78-253 1-176 (230)
115 PRK13632 cbiO cobalt transport 100.0 9.3E-32 2E-36 234.0 10.1 170 76-253 6-187 (271)
116 PRK14267 phosphate ABC transpo 100.0 1.6E-31 3.4E-36 230.2 11.3 170 75-254 2-195 (253)
117 PRK13543 cytochrome c biogenes 100.0 2.2E-31 4.9E-36 223.9 11.8 166 75-253 9-182 (214)
118 PRK14273 phosphate ABC transpo 100.0 1.9E-31 4E-36 229.9 11.3 169 75-254 5-196 (254)
119 TIGR02323 CP_lyasePhnK phospho 100.0 1.8E-31 3.9E-36 229.8 11.2 170 76-253 2-193 (253)
120 PRK14241 phosphate transporter 100.0 1.9E-31 4E-36 230.5 11.2 169 76-254 3-194 (258)
121 PRK10619 histidine/lysine/argi 100.0 1.7E-31 3.6E-36 230.6 10.8 169 76-254 4-198 (257)
122 PRK14268 phosphate ABC transpo 100.0 1.8E-31 3.8E-36 230.7 10.8 169 75-254 10-200 (258)
123 COG4181 Predicted ABC-type tra 100.0 3.1E-31 6.8E-36 209.7 11.2 172 76-253 5-191 (228)
124 PRK13649 cbiO cobalt transport 100.0 1.4E-31 3.1E-36 233.8 10.3 171 77-253 2-190 (280)
125 PRK13633 cobalt transporter AT 100.0 1.6E-31 3.5E-36 233.5 10.5 173 76-254 3-190 (280)
126 PRK14250 phosphate ABC transpo 100.0 1.6E-31 3.5E-36 228.7 10.3 164 75-253 1-176 (241)
127 COG1123 ATPase components of v 100.0 2.1E-31 4.5E-36 245.6 11.6 178 74-254 277-475 (539)
128 cd03231 ABC_CcmA_heme_exporter 100.0 1.8E-31 4E-36 222.3 9.9 160 78-253 1-170 (201)
129 PRK13540 cytochrome c biogenes 100.0 3.6E-31 7.8E-36 220.4 11.6 162 77-253 1-172 (200)
130 PRK14242 phosphate transporter 100.0 3.6E-31 7.8E-36 227.9 11.9 171 75-253 4-194 (253)
131 TIGR01186 proV glycine betaine 100.0 1.6E-31 3.5E-36 240.3 10.1 159 85-253 1-174 (363)
132 PRK13648 cbiO cobalt transport 100.0 2.3E-31 4.9E-36 231.3 10.5 170 76-253 6-187 (269)
133 TIGR03005 ectoine_ehuA ectoine 100.0 1.7E-31 3.7E-36 229.9 9.5 166 78-253 1-191 (252)
134 PRK10419 nikE nickel transport 100.0 3.5E-31 7.7E-36 230.0 11.4 173 75-253 1-196 (268)
135 PRK11231 fecE iron-dicitrate t 100.0 2.4E-31 5.2E-36 229.4 10.0 168 77-254 2-184 (255)
136 PRK10744 pstB phosphate transp 100.0 4.4E-31 9.5E-36 228.4 11.6 173 74-254 10-202 (260)
137 COG0488 Uup ATPase components 100.0 2.5E-31 5.5E-36 248.2 10.9 200 38-253 263-484 (530)
138 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.3E-31 5.1E-36 223.1 9.6 164 78-253 1-173 (211)
139 PRK13645 cbiO cobalt transport 100.0 2.2E-31 4.8E-36 233.6 9.9 172 76-253 5-195 (289)
140 PRK14235 phosphate transporter 100.0 4.5E-31 9.8E-36 229.2 11.7 169 75-254 17-209 (267)
141 PRK09544 znuC high-affinity zi 100.0 6.3E-31 1.4E-35 226.3 12.4 160 76-253 3-165 (251)
142 COG0444 DppD ABC-type dipeptid 100.0 2.7E-31 5.8E-36 229.8 10.1 177 77-254 1-199 (316)
143 PRK14262 phosphate ABC transpo 100.0 3.5E-31 7.6E-36 227.6 10.8 169 75-254 1-192 (250)
144 PRK10575 iron-hydroxamate tran 100.0 2.6E-31 5.6E-36 230.5 10.0 169 75-253 9-192 (265)
145 PRK11614 livF leucine/isoleuci 100.0 1.8E-31 3.8E-36 227.7 8.8 167 75-253 3-182 (237)
146 PRK13639 cbiO cobalt transport 100.0 2.4E-31 5.2E-36 231.9 9.7 169 77-254 1-183 (275)
147 PRK10418 nikD nickel transport 100.0 6.9E-31 1.5E-35 226.5 12.3 166 77-253 4-185 (254)
148 PRK10261 glutathione transport 100.0 3.6E-31 7.8E-36 254.2 11.6 177 74-254 9-214 (623)
149 TIGR03415 ABC_choXWV_ATP choli 100.0 3.3E-31 7.2E-36 239.4 10.5 163 81-253 28-209 (382)
150 PRK13640 cbiO cobalt transport 100.0 3.1E-31 6.8E-36 231.9 10.1 170 76-253 4-188 (282)
151 TIGR01277 thiQ thiamine ABC tr 100.0 4.9E-31 1.1E-35 221.6 10.8 165 78-254 1-174 (213)
152 COG4175 ProV ABC-type proline/ 100.0 1.4E-31 3.1E-36 229.6 7.3 173 75-253 2-209 (386)
153 PRK10771 thiQ thiamine transpo 100.0 4E-31 8.8E-36 224.9 10.0 164 77-253 1-174 (232)
154 TIGR01978 sufC FeS assembly AT 100.0 5E-31 1.1E-35 225.5 10.6 167 78-254 1-190 (243)
155 PRK14270 phosphate ABC transpo 100.0 7.6E-31 1.6E-35 225.7 11.7 168 75-253 2-192 (251)
156 cd03267 ABC_NatA_like Similar 100.0 3.8E-31 8.3E-36 225.7 9.7 153 96-253 36-198 (236)
157 PRK11300 livG leucine/isoleuci 100.0 5.1E-31 1.1E-35 227.2 10.4 168 76-253 4-198 (255)
158 PRK14274 phosphate ABC transpo 100.0 9E-31 1.9E-35 226.3 11.9 172 75-254 10-201 (259)
159 COG4598 HisP ABC-type histidin 100.0 4.5E-31 9.7E-36 210.5 9.0 161 75-253 4-197 (256)
160 PRK14239 phosphate transporter 100.0 8.6E-31 1.9E-35 225.4 11.3 168 76-254 4-194 (252)
161 TIGR03740 galliderm_ABC gallid 100.0 8.7E-31 1.9E-35 221.5 10.9 162 78-253 1-169 (223)
162 PRK14245 phosphate ABC transpo 100.0 9.8E-31 2.1E-35 224.9 11.3 168 76-254 2-192 (250)
163 PRK10762 D-ribose transporter 100.0 3.9E-31 8.4E-36 248.4 9.5 168 76-253 3-186 (501)
164 PRK14259 phosphate ABC transpo 100.0 9.4E-31 2E-35 227.4 11.1 170 76-254 12-200 (269)
165 PRK14248 phosphate ABC transpo 100.0 1.3E-30 2.9E-35 226.4 12.1 174 73-254 17-210 (268)
166 PRK13642 cbiO cobalt transport 100.0 7.6E-31 1.7E-35 228.9 10.5 172 76-254 3-186 (277)
167 PRK09984 phosphonate/organopho 100.0 8.1E-31 1.7E-35 227.0 10.6 169 76-254 3-198 (262)
168 TIGR01166 cbiO cobalt transpor 100.0 6.2E-31 1.3E-35 217.2 9.3 152 96-253 7-172 (190)
169 PRK14237 phosphate transporter 100.0 1.2E-30 2.7E-35 226.4 11.7 173 74-254 17-209 (267)
170 PRK14253 phosphate ABC transpo 100.0 1.3E-30 2.8E-35 224.0 11.6 169 75-254 1-191 (249)
171 PRK13549 xylose transporter AT 100.0 4.8E-31 1E-35 248.0 9.7 169 75-253 3-188 (506)
172 COG3840 ThiQ ABC-type thiamine 100.0 3.8E-31 8.2E-36 211.1 7.6 165 77-254 1-175 (231)
173 COG4608 AppF ABC-type oligopep 100.0 1.2E-30 2.5E-35 221.5 10.8 146 75-254 2-155 (268)
174 PRK14240 phosphate transporter 100.0 1.5E-30 3.2E-35 223.8 11.7 172 75-254 1-192 (250)
175 PRK13541 cytochrome c biogenes 100.0 1.4E-30 2.9E-35 216.1 11.0 161 77-253 1-168 (195)
176 PRK14254 phosphate ABC transpo 100.0 1.4E-30 3.1E-35 228.0 11.7 172 74-254 36-226 (285)
177 cd03300 ABC_PotA_N PotA is an 100.0 1.1E-30 2.4E-35 222.2 10.6 166 78-253 1-175 (232)
178 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.7E-31 1.7E-35 222.2 9.5 162 78-253 23-187 (224)
179 TIGR02982 heterocyst_DevA ABC 100.0 6.8E-31 1.5E-35 221.8 9.0 171 77-253 1-186 (220)
180 PRK14269 phosphate ABC transpo 100.0 1.5E-30 3.2E-35 223.3 11.2 169 77-253 2-187 (246)
181 TIGR03873 F420-0_ABC_ATP propo 100.0 9.9E-31 2.2E-35 225.7 9.7 167 78-254 2-183 (256)
182 PRK10253 iron-enterobactin tra 100.0 8.5E-31 1.8E-35 227.2 9.3 168 76-253 6-188 (265)
183 cd03229 ABC_Class3 This class 100.0 4.4E-31 9.5E-36 216.1 7.1 144 78-253 1-145 (178)
184 PRK10261 glutathione transport 100.0 1.3E-30 2.8E-35 250.4 11.5 175 75-253 311-508 (623)
185 cd03233 ABC_PDR_domain1 The pl 100.0 5E-31 1.1E-35 219.9 7.5 156 77-253 3-163 (202)
186 PRK14256 phosphate ABC transpo 100.0 2.8E-30 6.1E-35 222.3 12.2 172 76-254 3-194 (252)
187 cd03297 ABC_ModC_molybdenum_tr 100.0 1.4E-30 3.1E-35 218.8 9.8 160 78-253 2-176 (214)
188 PRK14249 phosphate ABC transpo 100.0 2.9E-30 6.2E-35 222.1 11.8 167 76-253 3-192 (251)
189 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-30 2.6E-35 245.5 10.2 165 75-253 9-185 (510)
190 PRK15134 microcin C ABC transp 100.0 1.7E-30 3.7E-35 245.5 11.3 174 76-253 4-201 (529)
191 PRK09700 D-allose transporter 100.0 1E-30 2.2E-35 246.0 9.7 169 76-254 4-191 (510)
192 PRK14272 phosphate ABC transpo 100.0 2.8E-30 6.1E-35 222.2 11.5 167 77-253 4-193 (252)
193 cd03246 ABCC_Protease_Secretio 100.0 1.1E-30 2.5E-35 212.7 8.6 140 78-253 1-141 (173)
194 PRK14251 phosphate ABC transpo 100.0 2.7E-30 5.8E-35 222.3 11.3 171 76-254 3-193 (251)
195 cd03299 ABC_ModC_like Archeal 100.0 1.9E-30 4E-35 221.3 10.2 165 78-253 1-174 (235)
196 PRK11144 modC molybdate transp 100.0 1.7E-30 3.7E-35 233.7 10.5 158 77-253 1-173 (352)
197 PRK15056 manganese/iron transp 100.0 1.9E-30 4.1E-35 225.9 10.4 171 77-254 6-188 (272)
198 PRK14260 phosphate ABC transpo 100.0 3.1E-30 6.8E-35 223.0 11.6 169 75-254 5-196 (259)
199 PRK14243 phosphate transporter 100.0 3.1E-30 6.8E-35 223.6 11.4 170 76-254 9-197 (264)
200 TIGR00968 3a0106s01 sulfate AB 100.0 1.9E-30 4.2E-35 221.5 9.8 166 78-253 1-175 (237)
201 PRK10636 putative ABC transpor 100.0 1.9E-30 4.2E-35 249.6 10.7 163 74-253 309-475 (638)
202 PRK10938 putative molybdenum t 100.0 2E-30 4.3E-35 243.0 10.3 167 76-254 2-181 (490)
203 TIGR03269 met_CoM_red_A2 methy 100.0 2.5E-30 5.4E-35 244.0 11.1 167 78-253 1-213 (520)
204 cd03228 ABCC_MRP_Like The MRP 100.0 1.7E-30 3.7E-35 211.2 8.6 141 78-254 1-142 (171)
205 PRK14261 phosphate ABC transpo 100.0 4E-30 8.6E-35 221.5 11.2 171 75-254 4-195 (253)
206 cd03230 ABC_DR_subfamily_A Thi 100.0 9.9E-31 2.1E-35 213.0 7.1 140 78-254 1-141 (173)
207 PRK14265 phosphate ABC transpo 100.0 4.4E-30 9.6E-35 223.8 11.6 175 71-254 14-207 (274)
208 PRK11147 ABC transporter ATPas 100.0 3.4E-30 7.3E-35 248.1 11.5 165 75-253 317-485 (635)
209 TIGR02142 modC_ABC molybdenum 100.0 2.8E-30 6.1E-35 232.6 10.3 158 82-253 4-176 (354)
210 cd03247 ABCC_cytochrome_bd The 100.0 1.5E-30 3.2E-35 212.9 7.6 142 78-253 1-143 (178)
211 cd03214 ABC_Iron-Siderophores_ 100.0 2.3E-30 4.9E-35 212.2 8.6 140 79-253 1-142 (180)
212 PRK13547 hmuV hemin importer A 100.0 2.5E-30 5.3E-35 225.1 9.3 167 77-253 1-199 (272)
213 PRK14255 phosphate ABC transpo 100.0 7E-30 1.5E-34 219.8 12.0 170 76-254 4-194 (252)
214 PRK14275 phosphate ABC transpo 100.0 4.6E-30 1E-34 224.9 11.0 172 74-254 36-228 (286)
215 PRK11288 araG L-arabinose tran 100.0 2.3E-30 5E-35 243.2 9.6 168 76-253 3-185 (501)
216 COG1123 ATPase components of v 100.0 3.8E-30 8.3E-35 237.2 10.8 175 76-254 4-200 (539)
217 cd03215 ABC_Carb_Monos_II This 100.0 2.3E-30 5E-35 212.5 8.3 143 76-253 3-149 (182)
218 PRK14246 phosphate ABC transpo 100.0 5.7E-30 1.2E-34 221.1 11.0 170 75-254 8-199 (257)
219 PRK14258 phosphate ABC transpo 100.0 5.9E-30 1.3E-34 221.5 11.0 167 76-253 6-195 (261)
220 cd03216 ABC_Carb_Monos_I This 100.0 2.7E-30 5.8E-35 208.6 7.6 127 78-253 1-127 (163)
221 PRK14271 phosphate ABC transpo 100.0 7.2E-30 1.6E-34 222.7 10.7 169 75-254 19-209 (276)
222 PRK14236 phosphate transporter 100.0 1E-29 2.2E-34 221.3 11.5 172 75-254 23-214 (272)
223 cd03244 ABCC_MRP_domain2 Domai 100.0 9.3E-30 2E-34 214.8 11.0 161 78-254 3-185 (221)
224 cd03223 ABCD_peroxisomal_ALDP 100.0 4.4E-30 9.6E-35 207.9 8.6 135 78-253 1-136 (166)
225 TIGR02770 nickel_nikD nickel i 100.0 6.4E-30 1.4E-34 217.3 10.0 154 96-253 1-170 (230)
226 PRK14238 phosphate transporter 100.0 9.2E-30 2E-34 221.5 11.2 171 75-253 22-212 (271)
227 cd03245 ABCC_bacteriocin_expor 100.0 2.7E-30 5.9E-35 217.9 7.5 162 78-254 3-186 (220)
228 PRK15134 microcin C ABC transp 100.0 6.2E-30 1.4E-34 241.7 10.5 172 75-253 273-470 (529)
229 cd03252 ABCC_Hemolysin The ABC 100.0 5.1E-30 1.1E-34 218.7 8.9 162 78-254 1-184 (237)
230 TIGR03269 met_CoM_red_A2 methy 100.0 7.1E-30 1.5E-34 240.9 10.5 170 75-253 277-472 (520)
231 CHL00131 ycf16 sulfate ABC tra 100.0 1.8E-29 3.9E-34 217.2 12.1 170 76-254 6-197 (252)
232 TIGR02633 xylG D-xylose ABC tr 100.0 5.6E-30 1.2E-34 240.5 9.5 167 77-253 1-186 (500)
233 PRK11819 putative ABC transpor 100.0 1.6E-29 3.4E-34 240.2 12.4 165 76-253 5-208 (556)
234 COG4161 ArtP ABC-type arginine 100.0 2.2E-29 4.8E-34 197.7 11.1 168 77-254 2-187 (242)
235 COG4133 CcmA ABC-type transpor 100.0 8.3E-30 1.8E-34 204.4 8.7 168 77-254 2-176 (209)
236 PRK09700 D-allose transporter 100.0 7.9E-30 1.7E-34 240.0 10.1 167 76-253 264-454 (510)
237 PRK09580 sufC cysteine desulfu 100.0 2.1E-29 4.6E-34 216.2 11.5 167 77-253 1-190 (248)
238 PRK13549 xylose transporter AT 100.0 1.2E-29 2.6E-34 238.6 10.7 173 75-253 257-450 (506)
239 cd03248 ABCC_TAP TAP, the Tran 100.0 5E-30 1.1E-34 217.2 7.2 168 75-254 9-196 (226)
240 cd03232 ABC_PDR_domain2 The pl 100.0 4.8E-30 1.1E-34 212.4 7.0 148 77-253 3-153 (192)
241 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.9E-29 8.5E-34 209.1 12.4 158 76-254 5-171 (207)
242 cd03213 ABCG_EPDR ABCG transpo 100.0 1.3E-29 2.8E-34 210.2 9.3 147 77-253 3-156 (194)
243 TIGR01184 ntrCD nitrate transp 100.0 1.2E-29 2.7E-34 215.6 9.3 151 97-253 1-159 (230)
244 PRK15064 ABC transporter ATP-b 100.0 1.9E-29 4.1E-34 238.5 11.4 162 76-253 318-483 (530)
245 cd03217 ABC_FeS_Assembly ABC-t 100.0 8.2E-30 1.8E-34 212.3 7.8 146 78-253 1-149 (200)
246 COG1119 ModF ABC-type molybden 100.0 1.3E-29 2.9E-34 211.3 9.0 172 74-254 28-217 (257)
247 PRK13546 teichoic acids export 100.0 2.7E-29 5.9E-34 217.6 11.3 148 95-253 38-188 (264)
248 PRK14266 phosphate ABC transpo 100.0 2.9E-29 6.4E-34 215.7 11.4 171 75-253 1-191 (250)
249 PRK15064 ABC transporter ATP-b 100.0 2.2E-29 4.7E-34 238.1 11.6 164 77-253 1-200 (530)
250 PRK14263 phosphate ABC transpo 100.0 2.7E-29 5.9E-34 217.3 11.1 167 76-254 7-195 (261)
251 COG4619 ABC-type uncharacteriz 100.0 4.8E-30 1E-34 202.4 5.5 165 77-254 3-179 (223)
252 cd03234 ABCG_White The White s 100.0 3.2E-29 7E-34 212.4 11.0 174 77-253 3-188 (226)
253 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.2E-29 4.7E-34 239.1 11.0 165 75-253 320-488 (552)
254 TIGR01257 rim_protein retinal- 100.0 1.7E-29 3.6E-34 262.4 10.7 172 75-254 1935-2116(2272)
255 PRK11819 putative ABC transpor 100.0 2.8E-29 6.1E-34 238.5 11.3 165 75-253 322-490 (556)
256 PRK14252 phosphate ABC transpo 100.0 3.7E-29 8.1E-34 216.9 11.1 168 75-253 14-206 (265)
257 cd03251 ABCC_MsbA MsbA is an e 100.0 5.1E-30 1.1E-34 218.2 5.5 162 78-254 1-184 (234)
258 cd03250 ABCC_MRP_domain1 Domai 100.0 7.3E-29 1.6E-33 207.0 12.2 154 78-252 1-172 (204)
259 PRK14244 phosphate ABC transpo 100.0 3.3E-29 7.1E-34 215.6 10.2 168 78-253 6-194 (251)
260 PRK10982 galactose/methyl gala 100.0 1.5E-29 3.4E-34 237.0 8.8 164 80-253 1-179 (491)
261 COG4604 CeuD ABC-type enteroch 100.0 1.2E-29 2.7E-34 204.8 6.9 169 77-254 1-181 (252)
262 cd03254 ABCC_Glucan_exporter_l 100.0 3.8E-29 8.2E-34 212.2 10.3 162 77-254 2-185 (229)
263 TIGR02633 xylG D-xylose ABC tr 100.0 2.1E-29 4.5E-34 236.7 9.2 173 76-254 256-449 (500)
264 PRK10938 putative molybdenum t 100.0 2E-29 4.4E-34 236.2 8.6 172 75-254 258-447 (490)
265 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.3E-29 1.6E-33 235.5 12.4 165 76-253 3-206 (552)
266 PRK11147 ABC transporter ATPas 100.0 6.7E-29 1.5E-33 239.1 12.3 166 75-253 1-201 (635)
267 PRK14264 phosphate ABC transpo 100.0 8.9E-29 1.9E-33 218.7 11.3 173 74-254 42-246 (305)
268 PRK13545 tagH teichoic acids e 100.0 4.8E-29 1E-33 230.7 9.9 166 76-253 20-188 (549)
269 PRK10636 putative ABC transpor 100.0 8.3E-29 1.8E-33 238.3 11.9 163 77-253 1-194 (638)
270 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 6.3E-29 1.4E-33 212.1 9.8 162 78-254 1-185 (238)
271 COG4586 ABC-type uncharacteriz 100.0 2.5E-29 5.5E-34 211.9 7.0 174 76-254 2-202 (325)
272 TIGR01257 rim_protein retinal- 100.0 6.4E-29 1.4E-33 258.1 11.1 172 75-254 926-1107(2272)
273 COG2274 SunT ABC-type bacterio 100.0 4.9E-29 1.1E-33 239.7 9.6 163 77-254 471-655 (709)
274 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4.3E-29 9.2E-34 197.6 7.4 115 78-253 1-115 (144)
275 TIGR02868 CydC thiol reductant 100.0 1.6E-28 3.4E-33 232.1 11.5 161 77-253 334-515 (529)
276 PRK14257 phosphate ABC transpo 100.0 1.8E-28 3.8E-33 218.6 10.9 172 76-253 79-270 (329)
277 PRK13409 putative ATPase RIL; 100.0 1.7E-28 3.7E-33 233.7 11.4 158 75-253 338-498 (590)
278 COG4107 PhnK ABC-type phosphon 100.0 3.8E-28 8.3E-33 192.9 11.2 172 75-254 4-197 (258)
279 COG1129 MglA ABC-type sugar tr 100.0 1.1E-28 2.3E-33 226.2 9.3 171 75-254 6-191 (500)
280 cd03253 ABCC_ATM1_transporter 100.0 1.3E-28 2.9E-33 209.7 9.1 161 78-254 1-183 (236)
281 PRK10982 galactose/methyl gala 100.0 1.6E-28 3.5E-33 230.2 10.1 168 75-253 248-436 (491)
282 cd03290 ABCC_SUR1_N The SUR do 100.0 5.1E-28 1.1E-32 203.9 12.1 154 79-249 2-181 (218)
283 PRK03695 vitamin B12-transport 100.0 1.7E-28 3.6E-33 210.9 9.2 160 79-254 2-179 (248)
284 KOG0058 Peptide exporter, ABC 100.0 1.8E-28 3.9E-33 229.8 9.5 164 76-253 464-649 (716)
285 COG4778 PhnL ABC-type phosphon 100.0 2.1E-28 4.6E-33 193.5 8.4 173 76-254 3-198 (235)
286 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.7E-28 1E-32 235.3 12.2 161 77-253 451-633 (686)
287 PRK11176 lipid transporter ATP 99.9 3.2E-28 7E-33 232.4 10.3 163 77-253 341-525 (582)
288 cd03288 ABCC_SUR2 The SUR doma 99.9 1.1E-27 2.4E-32 206.9 12.4 163 75-253 17-201 (257)
289 cd03289 ABCC_CFTR2 The CFTR su 99.9 7.1E-28 1.5E-32 209.7 10.9 160 78-254 3-184 (275)
290 PRK11288 araG L-arabinose tran 99.9 3.6E-28 7.9E-33 228.3 9.7 167 76-254 256-442 (501)
291 cd03237 ABC_RNaseL_inhibitor_d 99.9 7.8E-28 1.7E-32 206.5 10.7 143 98-254 11-161 (246)
292 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 6.6E-28 1.4E-32 235.1 11.5 162 77-253 477-660 (710)
293 PRK10762 D-ribose transporter 99.9 5.8E-28 1.3E-32 226.9 10.5 166 76-254 256-441 (501)
294 COG3845 ABC-type uncharacteriz 99.9 6.2E-28 1.4E-32 217.8 10.1 170 75-254 2-186 (501)
295 PRK10535 macrolide transporter 99.9 1.1E-27 2.4E-32 230.9 12.0 173 76-254 3-190 (648)
296 COG4559 ABC-type hemin transpo 99.9 3.9E-28 8.4E-33 198.2 7.4 167 77-253 1-186 (259)
297 KOG0055 Multidrug/pheromone ex 99.9 8.7E-28 1.9E-32 236.4 11.0 164 77-254 350-535 (1228)
298 PRK15177 Vi polysaccharide exp 99.9 5.9E-28 1.3E-32 203.1 8.0 143 96-252 2-148 (213)
299 PRK15439 autoinducer 2 ABC tra 99.9 1E-27 2.2E-32 225.7 10.5 166 75-254 266-449 (510)
300 COG0488 Uup ATPase components 99.9 1E-27 2.2E-32 224.1 10.2 166 75-253 1-198 (530)
301 TIGR02857 CydD thiol reductant 99.9 1.9E-27 4.1E-32 224.8 11.7 162 77-253 320-503 (529)
302 COG1134 TagH ABC-type polysacc 99.9 8E-28 1.7E-32 200.7 8.0 151 93-254 39-193 (249)
303 PLN03073 ABC transporter F fam 99.9 1.6E-27 3.6E-32 230.9 11.3 163 75-253 506-672 (718)
304 PLN03211 ABC transporter G-25; 99.9 1.3E-27 2.8E-32 230.3 10.1 165 79-254 70-252 (659)
305 PRK10790 putative multidrug tr 99.9 2.1E-27 4.6E-32 227.2 11.3 160 77-253 340-521 (592)
306 TIGR03375 type_I_sec_LssB type 99.9 2.3E-27 5E-32 230.8 11.5 162 77-253 463-646 (694)
307 cd03222 ABC_RNaseL_inhibitor T 99.9 1.2E-27 2.5E-32 195.3 7.9 112 81-253 4-116 (177)
308 COG4987 CydC ABC-type transpor 99.9 3.9E-27 8.5E-32 214.3 12.1 162 77-254 336-520 (573)
309 PRK11160 cysteine/glutathione 99.9 2.1E-27 4.6E-32 226.5 10.8 163 76-253 337-520 (574)
310 KOG0057 Mitochondrial Fe/S clu 99.9 4.5E-27 9.8E-32 214.2 12.2 160 77-253 351-532 (591)
311 PRK11174 cysteine/glutathione 99.9 3.9E-27 8.6E-32 225.2 12.3 160 77-253 349-530 (588)
312 TIGR02203 MsbA_lipidA lipid A 99.9 3.6E-27 7.8E-32 224.7 11.5 161 77-253 330-514 (571)
313 TIGR01842 type_I_sec_PrtD type 99.9 5E-27 1.1E-31 222.6 12.1 162 77-253 316-499 (544)
314 TIGR03771 anch_rpt_ABC anchore 99.9 4.2E-27 9E-32 199.2 10.3 148 102-253 1-158 (223)
315 COG4167 SapF ABC-type antimicr 99.9 3.3E-27 7.1E-32 188.9 8.8 177 75-254 2-195 (267)
316 COG4172 ABC-type uncharacteriz 99.9 4.4E-27 9.6E-32 207.6 10.5 176 75-254 274-472 (534)
317 TIGR01193 bacteriocin_ABC ABC- 99.9 3.6E-27 7.8E-32 229.9 10.9 162 77-253 473-656 (708)
318 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.5E-26 3.2E-31 202.1 13.1 152 75-251 37-202 (282)
319 PRK13657 cyclic beta-1,2-gluca 99.9 6.5E-27 1.4E-31 223.8 11.7 161 77-253 334-516 (588)
320 TIGR00958 3a01208 Conjugate Tr 99.9 6.3E-27 1.4E-31 228.1 11.3 158 77-249 478-658 (711)
321 TIGR00954 3a01203 Peroxysomal 99.9 4.8E-27 1E-31 226.8 10.2 165 76-253 450-627 (659)
322 TIGR01192 chvA glucan exporter 99.9 1.1E-26 2.3E-31 222.1 11.9 161 77-253 334-516 (585)
323 PRK10522 multidrug transporter 99.9 6E-27 1.3E-31 222.2 10.0 156 77-252 322-493 (547)
324 cd03236 ABC_RNaseL_inhibitor_d 99.9 9.4E-27 2E-31 200.7 10.2 158 81-254 4-185 (255)
325 PRK10789 putative multidrug tr 99.9 1.1E-26 2.5E-31 221.2 11.4 162 77-253 313-496 (569)
326 TIGR02204 MsbA_rel ABC transpo 99.9 1.4E-26 3E-31 220.9 11.6 162 77-253 337-521 (576)
327 TIGR01846 type_I_sec_HlyB type 99.9 1.2E-26 2.6E-31 225.8 11.0 162 77-253 455-638 (694)
328 COG4172 ABC-type uncharacteriz 99.9 2.6E-26 5.7E-31 202.7 11.2 175 75-254 4-203 (534)
329 COG4988 CydD ABC-type transpor 99.9 3.6E-26 7.8E-31 210.5 12.4 161 77-254 320-502 (559)
330 COG4674 Uncharacterized ABC-ty 99.9 5.2E-27 1.1E-31 189.4 6.0 169 76-254 4-193 (249)
331 COG4136 ABC-type uncharacteriz 99.9 9.3E-27 2E-31 180.8 6.9 168 77-252 2-178 (213)
332 COG4148 ModC ABC-type molybdat 99.9 1.2E-26 2.6E-31 196.3 8.0 154 82-253 5-173 (352)
333 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.7E-26 3.8E-31 219.4 10.0 159 77-251 337-513 (555)
334 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.5E-26 3.3E-31 185.3 7.9 124 80-253 2-125 (157)
335 cd03238 ABC_UvrA The excision 99.9 4E-26 8.7E-31 186.1 10.0 120 96-253 10-134 (176)
336 PLN03073 ABC transporter F fam 99.9 3.5E-26 7.5E-31 221.7 11.0 174 75-253 175-389 (718)
337 COG1132 MdlB ABC-type multidru 99.9 3.2E-26 6.9E-31 218.2 9.4 160 77-252 328-509 (567)
338 PRK13409 putative ATPase RIL; 99.9 4.5E-26 9.8E-31 217.1 9.5 155 82-254 78-258 (590)
339 TIGR00956 3a01205 Pleiotropic 99.9 8.7E-26 1.9E-30 232.4 11.1 176 76-254 758-948 (1394)
340 PTZ00265 multidrug resistance 99.9 1.1E-25 2.4E-30 232.0 11.6 170 77-254 382-625 (1466)
341 PLN03232 ABC transporter C fam 99.9 1.6E-25 3.6E-30 232.0 11.7 162 77-254 1234-1417(1495)
342 PTZ00265 multidrug resistance 99.9 2E-25 4.3E-30 230.2 11.9 171 77-253 1165-1403(1466)
343 KOG0055 Multidrug/pheromone ex 99.9 2.8E-25 6E-30 218.8 11.4 164 77-254 987-1172(1228)
344 PLN03130 ABC transporter C fam 99.9 3.1E-25 6.6E-30 230.7 12.3 161 77-253 1237-1419(1622)
345 COG1101 PhnK ABC-type uncharac 99.9 2E-25 4.4E-30 182.7 6.4 172 77-254 1-194 (263)
346 KOG0927 Predicted transporter 99.9 7.4E-25 1.6E-29 199.3 10.6 164 74-253 386-554 (614)
347 TIGR01187 potA spermidine/putr 99.9 3.6E-25 7.7E-30 197.3 8.4 136 112-253 1-145 (325)
348 PTZ00243 ABC transporter; Prov 99.9 8.4E-25 1.8E-29 227.0 12.4 161 77-253 1308-1491(1560)
349 COG0396 sufC Cysteine desulfur 99.9 1.2E-24 2.5E-29 179.9 10.7 171 75-253 1-189 (251)
350 KOG0059 Lipid exporter ABCA1 a 99.9 7E-25 1.5E-29 217.4 11.2 171 75-254 562-744 (885)
351 TIGR00957 MRP_assoc_pro multi 99.9 1E-24 2.2E-29 226.5 12.1 161 77-253 1284-1466(1522)
352 TIGR00955 3a01204 The Eye Pigm 99.9 1.1E-24 2.4E-29 209.2 9.7 152 96-254 40-212 (617)
353 PF00005 ABC_tran: ABC transpo 99.9 3.4E-25 7.4E-30 173.1 3.9 118 97-237 1-137 (137)
354 PLN03140 ABC transporter G fam 99.9 2.7E-24 5.9E-29 221.3 10.9 173 77-254 867-1065(1470)
355 TIGR01271 CFTR_protein cystic 99.9 5.8E-24 1.2E-28 220.4 13.0 161 77-254 1217-1399(1490)
356 TIGR00957 MRP_assoc_pro multi 99.9 7.7E-24 1.7E-28 219.9 12.2 155 77-252 636-804 (1522)
357 cd03270 ABC_UvrA_I The excisio 99.9 1.8E-23 3.9E-28 177.4 11.0 155 96-253 10-184 (226)
358 PLN03232 ABC transporter C fam 99.9 1.6E-23 3.5E-28 217.3 12.0 154 77-249 614-781 (1495)
359 PLN03130 ABC transporter C fam 99.9 2.6E-23 5.6E-28 216.4 12.9 153 77-249 614-781 (1622)
360 TIGR00956 3a01205 Pleiotropic 99.9 1.4E-23 3E-28 216.2 10.7 156 96-254 76-255 (1394)
361 KOG0056 Heavy metal exporter H 99.9 4.2E-24 9.1E-29 192.5 5.9 162 77-254 537-720 (790)
362 PLN03140 ABC transporter G fam 99.9 2.3E-23 5E-28 214.5 12.1 153 96-254 180-382 (1470)
363 KOG0061 Transporter, ABC super 99.9 2.3E-23 5E-28 199.1 10.8 172 77-254 25-216 (613)
364 COG4618 ArpD ABC-type protease 99.9 3.6E-23 7.9E-28 187.3 11.3 163 76-253 333-517 (580)
365 TIGR01271 CFTR_protein cystic 99.9 1.2E-22 2.5E-27 210.7 11.2 136 96-250 441-590 (1490)
366 KOG0066 eIF2-interacting prote 99.9 6.4E-22 1.4E-26 176.6 10.0 161 75-253 584-749 (807)
367 cd03278 ABC_SMC_barmotin Barmo 99.9 1.2E-21 2.6E-26 162.8 10.5 131 98-254 14-163 (197)
368 cd03272 ABC_SMC3_euk Eukaryoti 99.9 6.1E-22 1.3E-26 169.4 7.6 52 203-254 153-208 (243)
369 PTZ00243 ABC transporter; Prov 99.9 1.6E-21 3.5E-26 202.6 11.2 136 96-249 675-823 (1560)
370 COG4178 ABC-type uncharacteriz 99.8 4.3E-21 9.4E-26 179.5 11.7 157 75-253 390-560 (604)
371 KOG0062 ATPase component of AB 99.8 3E-21 6.6E-26 175.0 9.1 157 77-252 80-242 (582)
372 KOG0927 Predicted transporter 99.8 9.9E-22 2.2E-26 179.0 5.4 166 76-252 74-265 (614)
373 COG5265 ATM1 ABC-type transpor 99.8 4.2E-21 9.2E-26 170.6 9.1 160 77-253 262-444 (497)
374 COG4615 PvdE ABC-type sideroph 99.8 4.8E-21 1E-25 169.1 6.7 163 76-251 321-491 (546)
375 cd03273 ABC_SMC2_euk Eukaryoti 99.8 2.6E-20 5.7E-25 160.3 9.6 163 78-254 6-216 (251)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.8 2.3E-21 5E-26 162.8 1.9 157 77-254 5-177 (212)
377 cd03279 ABC_sbcCD SbcCD and ot 99.8 4.9E-20 1.1E-24 154.9 7.7 152 77-254 5-179 (213)
378 KOG0054 Multidrug resistance-a 99.8 9.1E-20 2E-24 183.5 10.7 162 77-254 1138-1321(1381)
379 COG1245 Predicted ATPase, RNas 99.8 1.3E-19 2.8E-24 162.5 9.5 156 75-253 340-500 (591)
380 cd03271 ABC_UvrA_II The excisi 99.8 2.8E-19 6.1E-24 154.2 11.0 64 191-254 149-218 (261)
381 cd03240 ABC_Rad50 The catalyti 99.8 5.7E-19 1.2E-23 147.5 8.4 133 102-253 18-167 (204)
382 KOG0060 Long-chain acyl-CoA tr 99.8 8.7E-19 1.9E-23 161.0 10.0 171 75-254 431-616 (659)
383 COG4138 BtuD ABC-type cobalami 99.8 5.7E-19 1.2E-23 140.7 7.7 153 76-254 2-178 (248)
384 cd03276 ABC_SMC6_euk Eukaryoti 99.8 2.4E-18 5.2E-23 143.1 11.8 136 98-254 13-159 (198)
385 KOG0054 Multidrug resistance-a 99.8 1.2E-18 2.7E-23 175.4 10.4 155 75-249 516-684 (1381)
386 KOG2355 Predicted ABC-type tra 99.8 2.6E-18 5.5E-23 140.3 9.7 172 76-254 12-193 (291)
387 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.4E-18 3.1E-23 149.2 7.2 49 206-254 153-205 (247)
388 COG4170 SapD ABC-type antimicr 99.7 4.8E-18 1E-22 139.2 8.7 176 75-254 1-204 (330)
389 KOG0065 Pleiotropic drug resis 99.7 3.2E-18 7E-23 169.6 8.3 172 77-254 787-976 (1391)
390 PRK00349 uvrA excinuclease ABC 99.7 1.2E-16 2.7E-21 158.2 12.5 64 191-254 810-879 (943)
391 COG1129 MglA ABC-type sugar tr 99.7 8.7E-17 1.9E-21 148.0 10.4 166 74-254 260-447 (500)
392 KOG0062 ATPase component of AB 99.7 6.1E-17 1.3E-21 147.2 8.3 161 75-252 360-526 (582)
393 TIGR00630 uvra excinuclease AB 99.7 1.4E-16 3.1E-21 157.5 9.9 64 191-254 808-877 (924)
394 PRK00635 excinuclease ABC subu 99.7 4.8E-16 1E-20 160.5 12.8 62 193-254 791-858 (1809)
395 cd03280 ABC_MutS2 MutS2 homolo 99.6 5.6E-16 1.2E-20 129.0 6.2 113 98-252 18-135 (200)
396 KOG0064 Peroxisomal long-chain 99.6 5.4E-16 1.2E-20 141.4 6.2 160 78-252 482-656 (728)
397 COG2401 ABC-type ATPase fused 99.6 1.6E-15 3.4E-20 135.2 8.2 146 96-254 398-553 (593)
398 COG1245 Predicted ATPase, RNas 99.6 7E-16 1.5E-20 138.8 5.8 161 82-254 79-259 (591)
399 cd03239 ABC_SMC_head The struc 99.6 3.7E-15 8E-20 121.9 6.8 49 206-254 92-144 (178)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.6 1.5E-14 3.3E-19 121.6 10.4 51 203-253 121-175 (213)
401 cd03227 ABC_Class2 ABC-type Cl 99.5 1.4E-14 3E-19 116.7 7.4 109 100-253 14-126 (162)
402 cd03283 ABC_MutS-like MutS-lik 99.5 6E-15 1.3E-19 122.7 5.1 34 96-131 16-49 (199)
403 KOG0066 eIF2-interacting prote 99.5 1.4E-14 3.1E-19 129.9 6.4 154 77-247 264-451 (807)
404 cd03243 ABC_MutS_homologs The 99.5 2.1E-14 4.6E-19 119.6 7.0 110 100-249 22-131 (202)
405 COG3845 ABC-type uncharacteriz 99.5 1.2E-13 2.6E-18 125.7 10.3 173 74-253 254-448 (501)
406 cd03282 ABC_MSH4_euk MutS4 hom 99.5 3.2E-14 7E-19 118.7 4.1 110 96-247 18-129 (204)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.5 3.3E-14 7.2E-19 120.2 3.6 110 96-247 19-133 (222)
408 cd03241 ABC_RecN RecN ATPase i 99.5 1.4E-13 3E-18 120.2 7.2 47 208-254 170-220 (276)
409 cd02025 PanK Pantothenate kina 99.4 2.4E-13 5.2E-18 114.8 7.5 130 109-254 1-132 (220)
410 KOG0065 Pleiotropic drug resis 99.4 7.9E-13 1.7E-17 131.9 11.8 160 94-254 128-306 (1391)
411 KOG0063 RNAse L inhibitor, ABC 99.4 4.9E-13 1.1E-17 119.8 6.9 138 98-252 353-500 (592)
412 TIGR00554 panK_bact pantothena 99.4 1.2E-12 2.6E-17 114.4 7.0 134 105-254 60-200 (290)
413 KOG2702 Predicted panthothenat 99.4 1.9E-12 4.1E-17 107.5 7.3 145 105-255 117-263 (323)
414 cd03281 ABC_MSH5_euk MutS5 hom 99.3 7.1E-12 1.5E-16 105.4 7.4 41 212-252 94-135 (213)
415 cd02023 UMPK Uridine monophosp 99.3 1.3E-11 2.8E-16 102.3 8.4 111 109-241 1-113 (198)
416 cd03242 ABC_RecF RecF is a rec 99.3 4.6E-12 9.9E-17 110.3 5.5 48 206-253 181-237 (270)
417 PRK00635 excinuclease ABC subu 99.2 3.6E-11 7.8E-16 125.0 11.3 64 191-254 1679-1748(1809)
418 smart00534 MUTSac ATPase domai 99.2 1.1E-11 2.3E-16 102.0 5.7 48 204-252 57-105 (185)
419 TIGR01069 mutS2 MutS2 family p 99.2 8.8E-12 1.9E-16 122.2 5.1 113 100-252 314-429 (771)
420 PRK09270 nucleoside triphospha 99.2 3E-11 6.6E-16 102.6 7.8 130 105-252 31-162 (229)
421 TIGR00235 udk uridine kinase. 99.2 3.5E-11 7.6E-16 100.6 6.8 117 105-241 4-120 (207)
422 COG0178 UvrA Excinuclease ATPa 99.2 1.5E-10 3.3E-15 110.9 11.5 52 203-254 817-871 (935)
423 cd03284 ABC_MutS1 MutS1 homolo 99.2 6E-11 1.3E-15 100.0 7.3 35 96-131 20-54 (216)
424 PLN02796 D-glycerate 3-kinase 99.2 5.5E-11 1.2E-15 105.6 7.1 134 96-243 81-235 (347)
425 PF02463 SMC_N: RecF/RecN/SMC 99.2 5.4E-11 1.2E-15 100.1 6.8 62 189-254 121-186 (220)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.1 8.2E-11 1.8E-15 99.4 6.6 42 96-140 20-62 (222)
427 COG1072 CoaA Panthothenate kin 99.1 1E-10 2.2E-15 100.0 6.3 134 104-253 79-213 (283)
428 PRK05439 pantothenate kinase; 99.1 1.3E-10 2.8E-15 102.5 6.4 133 106-254 85-220 (311)
429 PRK05480 uridine/cytidine kina 99.1 6.9E-10 1.5E-14 92.8 9.8 117 105-241 4-120 (209)
430 PTZ00132 GTP-binding nuclear p 99.1 1.2E-10 2.7E-15 97.6 4.2 47 208-254 150-203 (215)
431 PTZ00301 uridine kinase; Provi 99.0 5.7E-10 1.2E-14 93.5 7.9 126 108-253 4-129 (210)
432 COG0572 Udk Uridine kinase [Nu 99.0 2.2E-09 4.7E-14 89.5 8.6 124 106-253 7-130 (218)
433 cd00820 PEPCK_HprK Phosphoenol 99.0 3.7E-10 8.1E-15 84.2 3.4 33 96-128 4-36 (107)
434 PRK08533 flagellar accessory p 99.0 4E-09 8.7E-14 89.7 9.6 29 104-132 21-50 (230)
435 PRK00409 recombination and DNA 99.0 4.7E-10 1E-14 110.4 4.4 44 205-249 387-430 (782)
436 TIGR03238 dnd_assoc_3 dnd syst 98.9 6.1E-10 1.3E-14 102.4 3.3 39 96-139 21-59 (504)
437 PLN03046 D-glycerate 3-kinase; 98.9 5.8E-09 1.2E-13 94.7 9.4 124 107-244 212-348 (460)
438 TIGR02858 spore_III_AA stage I 98.9 4E-09 8.6E-14 91.6 7.9 29 108-139 112-140 (270)
439 PLN02318 phosphoribulokinase/u 98.9 2.4E-09 5.2E-14 100.8 6.8 115 107-253 65-179 (656)
440 PF00485 PRK: Phosphoribulokin 98.9 3.9E-10 8.5E-15 93.3 1.0 118 109-242 1-122 (194)
441 KOG0063 RNAse L inhibitor, ABC 98.9 8.3E-10 1.8E-14 99.3 3.0 142 105-253 98-258 (592)
442 PRK06995 flhF flagellar biosyn 98.9 5.7E-09 1.2E-13 97.1 7.9 126 96-240 245-380 (484)
443 cd02026 PRK Phosphoribulokinas 98.8 1.7E-08 3.7E-13 88.0 9.0 106 109-241 1-110 (273)
444 cd03286 ABC_MSH6_euk MutS6 hom 98.8 3E-09 6.5E-14 89.7 4.0 35 97-131 20-54 (218)
445 PRK06793 fliI flagellum-specif 98.8 6.6E-09 1.4E-13 95.4 6.2 132 77-250 130-268 (432)
446 cd01128 rho_factor Transcripti 98.8 6.1E-09 1.3E-13 89.5 4.8 34 99-132 8-41 (249)
447 cd02024 NRK1 Nicotinamide ribo 98.8 2.8E-08 6.2E-13 81.7 7.9 121 109-254 1-134 (187)
448 TIGR00630 uvra excinuclease AB 98.8 9.7E-09 2.1E-13 102.4 5.9 62 193-254 469-535 (924)
449 PRK00349 uvrA excinuclease ABC 98.7 9.2E-09 2E-13 102.7 5.2 62 193-254 471-537 (943)
450 COG3910 Predicted ATPase [Gene 98.7 9.5E-08 2.1E-12 77.6 8.7 48 206-254 127-174 (233)
451 PLN02348 phosphoribulokinase 98.7 4.4E-08 9.6E-13 88.5 6.8 121 106-241 48-177 (395)
452 PRK13695 putative NTPase; Prov 98.7 4.3E-09 9.4E-14 85.5 0.2 47 205-251 75-123 (174)
453 cd02028 UMPK_like Uridine mono 98.7 5.4E-08 1.2E-12 79.6 6.5 112 109-240 1-112 (179)
454 PRK07429 phosphoribulokinase; 98.6 1.5E-07 3.3E-12 83.9 9.6 108 107-241 8-119 (327)
455 COG4240 Predicted kinase [Gene 98.6 8.5E-08 1.8E-12 80.0 5.9 126 104-242 47-178 (300)
456 cd01130 VirB11-like_ATPase Typ 98.6 4.4E-08 9.5E-13 80.6 3.5 40 98-140 16-55 (186)
457 PF13555 AAA_29: P-loop contai 98.5 1.3E-07 2.9E-12 63.3 4.3 35 98-132 13-48 (62)
458 PF13304 AAA_21: AAA domain; P 98.5 1.7E-08 3.6E-13 84.8 -0.7 47 207-253 235-284 (303)
459 PRK06002 fliI flagellum-specif 98.5 1.2E-07 2.7E-12 87.3 4.3 59 75-140 137-195 (450)
460 TIGR00767 rho transcription te 98.4 2.9E-07 6.4E-12 83.5 5.9 101 29-132 73-193 (415)
461 smart00382 AAA ATPases associa 98.4 1E-06 2.3E-11 66.9 8.3 27 106-132 1-27 (148)
462 TIGR02788 VirB11 P-type DNA tr 98.4 7.2E-07 1.6E-11 79.1 8.2 33 100-132 137-169 (308)
463 PRK14721 flhF flagellar biosyn 98.4 8.5E-07 1.8E-11 81.4 8.2 95 104-217 188-284 (420)
464 PRK06067 flagellar accessory p 98.4 1.2E-06 2.6E-11 74.4 8.4 119 103-250 21-144 (234)
465 cd01124 KaiC KaiC is a circadi 98.3 1.6E-06 3.4E-11 70.7 7.5 51 203-253 66-125 (187)
466 PRK07196 fliI flagellum-specif 98.3 2.7E-07 5.9E-12 84.9 3.0 36 96-132 145-180 (434)
467 cd02029 PRK_like Phosphoribulo 98.3 3.2E-06 6.9E-11 72.9 9.0 113 109-239 1-130 (277)
468 cd01120 RecA-like_NTPases RecA 98.3 1.9E-06 4.1E-11 67.9 7.1 24 109-132 1-24 (165)
469 PRK14722 flhF flagellar biosyn 98.3 3.9E-06 8.5E-11 76.0 9.8 36 96-131 126-161 (374)
470 TIGR02903 spore_lon_C ATP-depe 98.3 5E-06 1.1E-10 80.3 11.1 116 106-253 174-291 (615)
471 PRK09825 idnK D-gluconate kina 98.3 5.5E-07 1.2E-11 73.5 3.8 27 106-132 2-28 (176)
472 PRK09862 putative ATP-dependen 98.3 4.9E-07 1.1E-11 84.8 3.6 54 80-140 187-240 (506)
473 cd01131 PilT Pilus retraction 98.3 4.3E-06 9.3E-11 69.4 8.9 24 109-132 3-26 (198)
474 TIGR03015 pepcterm_ATPase puta 98.3 7.3E-06 1.6E-10 70.8 10.4 36 96-131 31-67 (269)
475 PRK10078 ribose 1,5-bisphospho 98.3 6.1E-07 1.3E-11 73.7 3.2 26 107-132 2-27 (186)
476 PRK07594 type III secretion sy 98.3 9.6E-07 2.1E-11 81.3 4.6 58 76-140 128-185 (433)
477 PRK14723 flhF flagellar biosyn 98.2 2.4E-06 5.3E-11 83.3 7.3 37 96-132 174-210 (767)
478 cd01136 ATPase_flagellum-secre 98.2 1.1E-06 2.4E-11 78.2 4.5 41 96-140 59-99 (326)
479 PHA02562 46 endonuclease subun 98.2 1.2E-06 2.6E-11 83.7 3.5 49 205-253 465-524 (562)
480 PRK07721 fliI flagellum-specif 98.2 1.2E-06 2.7E-11 80.9 3.4 40 96-139 148-187 (438)
481 PRK00300 gmk guanylate kinase; 98.1 1.8E-06 4E-11 71.6 3.8 27 105-131 3-29 (205)
482 TIGR02546 III_secr_ATP type II 98.1 2.3E-06 5.1E-11 78.9 4.7 41 96-140 135-175 (422)
483 PRK15453 phosphoribulokinase; 98.1 1.3E-05 2.7E-10 69.8 8.7 118 106-239 4-136 (290)
484 PRK07667 uridine kinase; Provi 98.1 5.3E-06 1.2E-10 68.6 6.1 106 107-237 17-130 (193)
485 PRK10246 exonuclease subunit S 98.1 1.7E-06 3.7E-11 88.3 3.8 54 201-254 942-1003(1047)
486 TIGR00634 recN DNA repair prot 98.1 2.2E-06 4.9E-11 82.0 4.3 48 207-254 439-490 (563)
487 TIGR00618 sbcc exonuclease Sbc 98.1 2E-06 4.3E-11 87.9 4.2 53 202-254 944-1006(1042)
488 PRK08149 ATP synthase SpaL; Va 98.1 1.7E-06 3.6E-11 79.6 3.1 36 96-132 141-176 (428)
489 TIGR01026 fliI_yscN ATPase Fli 98.1 3E-06 6.4E-11 78.5 4.6 36 96-132 153-188 (440)
490 cd01125 repA Hexameric Replica 98.1 2E-05 4.3E-10 67.3 9.4 25 107-131 1-25 (239)
491 PRK09099 type III secretion sy 98.1 3.5E-06 7.5E-11 77.8 4.8 41 96-140 153-193 (441)
492 PRK10416 signal recognition pa 98.1 2.7E-05 5.8E-10 69.4 9.7 29 104-132 111-139 (318)
493 TIGR02322 phosphon_PhnN phosph 98.1 3.4E-06 7.4E-11 68.6 3.7 26 107-132 1-26 (179)
494 PRK05688 fliI flagellum-specif 98.1 2.6E-06 5.6E-11 78.7 3.3 36 96-132 158-193 (451)
495 TIGR03498 FliI_clade3 flagella 98.1 4.1E-06 8.9E-11 77.0 4.5 55 79-140 116-170 (418)
496 PRK08972 fliI flagellum-specif 98.1 2.6E-06 5.6E-11 78.4 3.2 36 96-132 152-187 (444)
497 PRK10869 recombination and rep 98.1 3.1E-06 6.7E-11 80.8 3.8 47 208-254 430-480 (553)
498 PRK05922 type III secretion sy 98.1 3E-06 6.5E-11 78.0 3.5 41 96-140 147-187 (434)
499 TIGR03263 guanyl_kin guanylate 98.0 2.9E-06 6.2E-11 69.0 3.0 25 107-131 1-25 (180)
500 PF13476 AAA_23: AAA domain; P 98.0 3.3E-06 7.1E-11 69.2 3.3 34 98-132 11-44 (202)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-40 Score=271.56 Aligned_cols=169 Identities=20% Similarity=0.254 Sum_probs=139.1
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------ 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------ 147 (255)
++|+++||+|+||+.. +|++||++|.+||+++|+||||||||||||||+++.+ |++|+ .+++. +.
T Consensus 1 ~mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 1 MMIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDIL 73 (240)
T ss_pred CeEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHH
Confidence 3799999999999854 6699999999999999999999999999999999998 99999 56553 21
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
+..+|.+ + ..|.++. .+++.+|...... ..+.+........+++|+.+++. .+.|+.+|||||||||+||||
T Consensus 74 ~~R~~vGmV-F-Q~fnLFP-HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 74 KLRRKVGMV-F-QQFNLFP-HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred HHHHhcCee-c-ccccccc-cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence 2346663 3 3333332 3788888776554 34556666667788999999987 568999999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|+++|+||||+.|||+...++.+++.+.
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988753
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-40 Score=276.15 Aligned_cols=170 Identities=16% Similarity=0.225 Sum_probs=143.8
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCCe
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDV 151 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~~ 151 (255)
.+++++++++.|++. . +|+|+||+|.+||+++|+||||||||||||+|+|+.+ |++|+ .+++... .++.
T Consensus 2 ~~l~i~~v~~~f~~~--~--vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGGV--E--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred ceEEEEeeEEEeCce--E--EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence 478999999999983 3 6699999999999999999999999999999999999 99999 4554322 4567
Q ss_pred EEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcE
Q 025293 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~i 229 (255)
|+ +++.+..++. +++.+|+.+.....+...........++++.+++. .++++.+|||||||||+|||||+.+|++
T Consensus 75 ~~-vFQ~~~LlPW--~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l 151 (248)
T COG1116 75 GY-VFQEDALLPW--LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL 151 (248)
T ss_pred EE-EeccCcccch--hhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence 77 5555544433 68888888877776655555556788999999985 6899999999999999999999999999
Q ss_pred EEEcCCCCCCChhHHHHHHHHHHhhC
Q 025293 230 VIVDGNYLFLDGGVWKDVSSMFDEKW 255 (255)
Q Consensus 230 lllDep~~~LD~~~~~~l~~ll~~~~ 255 (255)
|+|||||..||+..+..+.+.+.++|
T Consensus 152 LLlDEPFgALDalTR~~lq~~l~~lw 177 (248)
T COG1116 152 LLLDEPFGALDALTREELQDELLRLW 177 (248)
T ss_pred EEEcCCcchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999987765
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-38 Score=264.25 Aligned_cols=168 Identities=16% Similarity=0.164 Sum_probs=145.2
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
||+++||+|.|++. . +++|+||+|++||+++++|||||||||+||||+++++ |++|+ .+++...
T Consensus 1 MI~~~nvsk~y~~~--~--av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRYGNK--K--AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL 73 (309)
T ss_pred CceeeeeehhcCCc--e--eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence 68999999999973 3 5599999999999999999999999999999999999 99999 5554322
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc----CCccCCCCCcccccchhhhhhh
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lS~G~kqrv~la~~l 223 (255)
+..+|++++..+...+ +++.+|+.......+........+..++++.+++. .++|+++|||||+|||.+||||
T Consensus 74 Rr~IGYviQqigLFPh---~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 74 RRKIGYVIQQIGLFPH---LTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred HHhhhhhhhhcccCCC---ccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 3468887777665443 78999998888887776666667788999999986 4689999999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|++||+||||..|||.++.++.+.+.++
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~l 181 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKEL 181 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHH
Confidence 9999999999999999999999999888653
No 4
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-37 Score=261.21 Aligned_cols=171 Identities=16% Similarity=0.219 Sum_probs=131.1
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-c-CCCCCC----C
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S-FDSQVK----P 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~-~~~~~~----~ 148 (255)
+++|+++||++.|++. + +|+||||+|++|++++|+||||||||||+|+|+|+++ |.+|+ . ++.... .
T Consensus 2 ~~~i~v~nl~v~y~~~--~--vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 2 MPMIEVENLTVSYGNR--P--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred CcEEEEeeeEEEECCE--e--eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence 5689999999999963 3 5699999999999999999999999999999999998 99999 3 333221 1
Q ss_pred CCeEEEEecCC-CCCCCccCCcccChHHHHH-hcCC---CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293 149 PDVATVLPMDG-FHLYLSQLDAMEDPKEAHA-RRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 149 ~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~-~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~ 221 (255)
..+|+ +++.- ++... .+++.+.+...+. ..+. +...+...+.++|+.+++. .++.+..|||||+|||.|||
T Consensus 75 ~~IgY-VPQ~~~~d~~f-P~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lAR 152 (254)
T COG1121 75 LRIGY-VPQKSSVDRSF-PITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLAR 152 (254)
T ss_pred CeEEE-cCcccccCCCC-CcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHH
Confidence 34676 44422 22111 1344443322110 1111 1223356778999999987 57889999999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+.+|++|+|||||+++|+.++..+.++|++.
T Consensus 153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l 185 (254)
T COG1121 153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL 185 (254)
T ss_pred HhccCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864
No 5
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-37 Score=264.08 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=144.8
Q ss_pred eEEecCchheehh-hhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~-~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
||++++|+|.|.. ....+.+++||||+|++||++||+|.||||||||+|+|+++.+ |++|+ .+++...
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence 6899999999986 2234568899999999999999999999999999999999998 99999 4555221
Q ss_pred ----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~ 221 (255)
+..+|. |++ .|.+.. ..|+.+|+.+..+..+.+......++.++++.+++. .+.|+.+|||||||||+|||
T Consensus 78 Lr~~R~~IGM-IFQ-hFnLLs-srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 78 LRQLRQKIGM-IFQ-HFNLLS-SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HHHHHhhccE-Eec-cccccc-cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence 345776 333 333322 258889999999888887777777889999999987 46889999999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+.+|+|||.||+|+.|||...+.+.+++.++
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~I 187 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDI 187 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764
No 6
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.8e-37 Score=255.63 Aligned_cols=172 Identities=16% Similarity=0.141 Sum_probs=138.2
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC-------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------- 147 (255)
+++++||+|.|+.....+.+|+++||+|++||+++|+|||||||||||++|.|+.+ |++|. .+++. ..
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence 46799999999764334557899999999999999999999999999999999998 99999 55542 11
Q ss_pred ----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--C-ccCCCCCcccccchhhh
Q 025293 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-VYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~-~~~~~lS~G~kqrv~la 220 (255)
...+|. +++++..++. +++.+++.......+............+++.+++.. . .++.+|||||||||+||
T Consensus 78 ~~~R~~~iGf-vFQ~~nLl~~--ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 78 AKLRRKKIGF-VFQNFNLLPD--LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHHHHHhEEE-ECccCCCCCC--CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 235777 5555444433 788888887665555543333455677888888862 3 66889999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||+.+|++++.||||..||..+.+.++++|.+.
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999764
No 7
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-37 Score=270.88 Aligned_cols=169 Identities=17% Similarity=0.125 Sum_probs=145.0
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+|+++||+|.||+.. +++++||+|+.||+++|+||||||||||||+|+|+.. |++|+ .+++...
T Consensus 1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 56899999999999832 5699999999999999999999999999999999998 99999 5665322
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
...++. +++++-.++ .+++.+|+.+..+..+.+......++.++.+.+++. .++++.+|||||+|||++||||+.
T Consensus 74 ~R~iam-VFQ~yALyP--hmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 74 KRGIAM-VFQNYALYP--HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR 150 (338)
T ss_pred HCCEEE-EeCCccccC--CCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence 234565 555443333 389999999999998887777778889999999887 578899999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|+++|+|||++.||...+..++..|.+
T Consensus 151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~ 178 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKLRVLMRSEIKK 178 (338)
T ss_pred CCCEEEecCchhHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999888765
No 8
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-37 Score=254.53 Aligned_cols=175 Identities=16% Similarity=0.153 Sum_probs=135.5
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCC----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP---- 149 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~---- 149 (255)
+++|+++||++.|+.......++++|||+|.+||++||+|+||||||||.|+|+|+.+ |+.|+ .++++...+
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence 4689999999999874322235699999999999999999999999999999999998 99999 666643222
Q ss_pred ----CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhh
Q 025293 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 150 ----~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~ 222 (255)
..-.+|++|.+.-.++..++.+.+.......++.. ...+..++++.++++ .++++.+|||||+||++||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence 11233666665443333444433333333333321 233478899999987 578899999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+.+|++||+||||+.||...+.++++++.+.
T Consensus 156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l 187 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLEL 187 (252)
T ss_pred hccCCCEEEecCchhhhcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999764
No 9
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.7e-36 Score=243.14 Aligned_cols=169 Identities=17% Similarity=0.127 Sum_probs=145.6
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-C--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-V-------- 146 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~-------- 146 (255)
||+++||+|.|++. +. +|+||||+|++||++-|+||||||||||||+|.+..+ |+.|+ .+++. +
T Consensus 1 mI~f~~V~k~Y~~g-~~--aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 1 MIRFENVSKAYPGG-RE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred CeeehhhhhhcCCC-ch--hhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence 68999999999875 33 6699999999999999999999999999999999998 99999 44442 1
Q ss_pred --CCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhh
Q 025293 147 --KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 147 --~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~ 222 (255)
.+..+|. +++|+..+.. .++.+|+.+..+..|.+.......+.++++.+++.. +..+.+|||||+|||+||||
T Consensus 75 P~LRR~IGv-VFQD~rLL~~--~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 75 PFLRRQIGV-VFQDFRLLPD--RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARA 151 (223)
T ss_pred chhhheeee-Eeeecccccc--chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHH
Confidence 1345776 6777665554 688999999999999877667778899999999874 45678999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++.+|++||.||||-.|||+...+++++|.+.
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999764
No 10
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-36 Score=266.16 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=141.5
Q ss_pred CCeEEecCchheeh-hhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC-CCC----
Q 025293 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS-QVK---- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~-~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~-~~~---- 147 (255)
+.+++++||+|.|+ +.. +|+||||+|++|+++||+||||||||||+|+|+|++. |++|+ .+++ +..
T Consensus 2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA 74 (293)
T ss_pred CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence 35789999999999 533 6699999999999999999999999999999999998 99999 3443 322
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhh
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l 223 (255)
...+|++...+.++ +.+++.+++.+....++.+.......+..+++.+++.. ++++..||+|||||+.+|.+|
T Consensus 75 ~~~~~igy~~~~~~~~---~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 75 KVRRRIGYVPQEPSLY---PELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred HHHhheEEEccCCCCC---ccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH
Confidence 23467743333322 33899999999888887654444567889999999986 677899999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|+++||||||+|||+..+..++++|.+.
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l 182 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLREL 182 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999764
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-37 Score=269.93 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=140.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC------C
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------K 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~------~ 147 (255)
++.++++||+|.|++.. +++|+||+|++||+++|+||||||||||||+|+|+.. |++|+ .+++.. .
T Consensus 3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE 75 (352)
T ss_pred CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 46899999999999633 6699999999999999999999999999999999998 99999 555532 2
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
+..+|. +++++-.++. +++.+|+.+..+.... ........+.++++.+++. .++++.+|||||+|||++||||+
T Consensus 76 kR~ig~-VFQ~YALFPH--ltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~ 152 (352)
T COG3842 76 KRPIGM-VFQSYALFPH--MTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV 152 (352)
T ss_pred hcccce-eecCcccCCC--CcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence 335676 6666554443 8999999998874443 2233445778888888876 57889999999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|++||||||++.||..-+.++...+.+.
T Consensus 153 ~~P~vLLLDEPlSaLD~kLR~~mr~Elk~l 182 (352)
T COG3842 153 PEPKVLLLDEPLSALDAKLREQMRKELKEL 182 (352)
T ss_pred cCcchhhhcCcccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999888877653
No 12
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3e-36 Score=250.02 Aligned_cols=170 Identities=18% Similarity=0.225 Sum_probs=137.7
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-c-CCCCCC-----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S-FDSQVK----- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~-~~~~~~----- 147 (255)
.++|++++|+++||+ +.| ++|+||+|++||+++|+||||||||||||+|.|+++ |++|+ . ++.++.
T Consensus 6 ~~~I~vr~v~~~fG~--~~I--ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSFGD--RVI--LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeecCC--EEE--ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence 468999999999998 444 499999999999999999999999999999999999 99999 3 343321
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC-CCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchh
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~ 218 (255)
...+|. +++.+-.+. .+++.+|+.+..+.+. ++.......+..-++.+++. .++++.+|||||++|++
T Consensus 79 ~~~~ir~r~Gv-lFQ~gALFs--sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRva 155 (263)
T COG1127 79 ELYEIRKRMGV-LFQQGALFS--SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVA 155 (263)
T ss_pred HHHHHHhheeE-Eeecccccc--ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHH
Confidence 234776 555554433 3789999887655443 34444444455667777776 46889999999999999
Q ss_pred hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|||++.+|+++++||||+||||.+...+.++|.+.
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L 191 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIREL 191 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999988754
No 13
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.7e-36 Score=254.23 Aligned_cols=168 Identities=17% Similarity=0.175 Sum_probs=130.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
+++++||+++|++ +.+ ++|+||+|++|++++|+||||||||||||+|+|+++ |.+|+ .+++...
T Consensus 2 ~L~~~~ls~~y~~--~~i--l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGG--KPI--LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECC--eeE--EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence 6899999999997 444 599999999999999999999999999999999998 99999 5555322
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCC---CccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW---TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~---~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~ 221 (255)
....++ +.+.....+ .+++.+.+...+.- .+... ..+...+..+++.+++. .++.+..|||||||||.||+
T Consensus 75 Ak~ia~-vpQ~~~~~~--~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 75 AKKLAY-VPQSPSAPF--GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR 151 (258)
T ss_pred hhhEEE-eccCCCCCC--CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence 124555 444432221 25666655443322 12221 22333566778888775 56779999999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+.+|++|+|||||+.||..++.++++++.+.
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l 184 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDL 184 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998753
No 14
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-36 Score=247.46 Aligned_cols=170 Identities=18% Similarity=0.208 Sum_probs=132.9
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------ 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------ 147 (255)
.+|+++||++.|.+. +. +|+||||+|++||+++|+|+||||||||||+|+|+.. |++|+ .+++. +.
T Consensus 2 ~~i~~~nl~k~yp~~-~~--aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k~ 75 (258)
T COG3638 2 MMIEVKNLSKTYPGG-HQ--ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGKE 75 (258)
T ss_pred ceEEEeeeeeecCCC-ce--eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchHH
Confidence 589999999999432 33 6699999999999999999999999999999999998 99999 44442 11
Q ss_pred ----CCCeEEEEecCCCCCCCccCCcccChH--------HHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCccc
Q 025293 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPK--------EAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGV 213 (255)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~ 213 (255)
+.+.|. +++..-...+ +++.+|+. .++..++++...+.....+.|+.+++.. ..+...|||||
T Consensus 76 lr~~r~~iGm-IfQ~~nLv~r--~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQ 152 (258)
T COG3638 76 LRKLRRDIGM-IFQQFNLVPR--LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQ 152 (258)
T ss_pred HHHHHHhcee-EeccCCcccc--cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcch
Confidence 235776 4433322222 44444432 2344556555555666788999998863 46678999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|||+|||+|+.+|+|+|.|||++.|||.+.++++++|.+.
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i 193 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999764
No 15
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-35 Score=247.86 Aligned_cols=171 Identities=15% Similarity=0.126 Sum_probs=142.6
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC--------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------- 146 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-------- 146 (255)
.+++++++++.|++. .. +++++||+|++|++++|+|+||||||||+++++|+++ |++|+ .+++..
T Consensus 2 ~~i~~~~l~~~y~~~-~~--~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 2 RMIEAENLSFRYPGR-KA--ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred ceEEEEEEEEEcCCC-ce--eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence 578999999999874 23 6699999999999999999999999999999999998 99999 454432
Q ss_pred -CCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 147 -KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 147 -~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
....+|.+++..+..+.. -++.+++.+...+.+++......++.++++.+++. .++.+..|||||||||+||.+|
T Consensus 76 ~~~~~vG~VfQnpd~q~~~--~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFG--PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred HhhcceEEEEECccccccc--CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence 135688744444433333 37778888888888887655566778888888876 5677889999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|++|||||||++||+..+..+++++.+.
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L 184 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKL 184 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999764
No 16
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-35 Score=239.31 Aligned_cols=168 Identities=17% Similarity=0.170 Sum_probs=136.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC-CCC------C
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS-QVK------P 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~-~~~------~ 148 (255)
||++.+++|+|+... .+++||||++++|+++||+|||||||||+||+|++++. |++|+ .+++ +.. +
T Consensus 1 Ml~v~~l~K~y~~~v---~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGSKV---QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccCHH---hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence 689999999998732 26799999999999999999999999999999999998 99999 4443 211 2
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
..+|. +. +...+ ...+++.+++.++.+.+++.......+...+.+.|++. .++++..||.||||||++|+||+.+
T Consensus 75 r~IGV-l~-~e~gl-Y~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 75 RKIGV-LF-GERGL-YARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred hhcce-ec-CCcCh-hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 33554 22 22222 23478899999999888876544455666777777765 5788899999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+++++|||++|||...+..+.+++..
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~dfi~q 178 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHDFIKQ 178 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999865
No 17
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.6e-34 Score=255.41 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=132.3
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------ 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------ 147 (255)
.+|+++||+|.|++ +. +|+|+||+|++||++||+||||||||||+++|+|+++ |++|+ .+++. ..
T Consensus 6 ~~i~i~~l~k~~~~--~~--~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 6 APIDFRNVEKRYGD--KL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARHA 78 (306)
T ss_pred ceEEEEeEEEEECC--eE--EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHHH
Confidence 58999999999986 33 6699999999999999999999999999999999998 99999 44442 21
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
...+|+ +..+.. ++ ..+++.+++.+....++...........++++.+++. .++++..||+||+||+++|++|+.
T Consensus 79 ~~~ig~-v~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 79 RQRVGV-VPQFDN-LD-PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred HhcEEE-EeccCc-CC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 123565 443322 11 2367777777655554433222233456778887775 367788999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++|||||||++||+.++..+++++.+.
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l 184 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSL 184 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999763
No 18
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=234.90 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=125.2
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC-----Cc-cCCC-CCC
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS-SFDS-QVK 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~-----G~-~~~~-~~~ 147 (255)
++.++++||++.||+.. +|+|||+.|++++++||+||+|||||||||+++.+.. ... |+ .+++ ++.
T Consensus 5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---l~~~~r~~G~v~~~g~ni~ 77 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---LIPGARVEGEVLLDGKNIY 77 (253)
T ss_pred cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---cCcCceEEEEEEECCeecc
Confidence 45799999999999854 6699999999999999999999999999999999875 433 44 2222 222
Q ss_pred ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHH------HHHhhcccCCccCCCCCcc
Q 025293 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN------CLKNLRNQGSVYAPSFDHG 212 (255)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~l~~~~~~~~~~lS~G 212 (255)
+..+|.+ ++..-.++ ++..+|+.+..+..|+....-.+.+.+ +++.+.-..+.....||||
T Consensus 78 ~~~~d~~~lRr~vGMV-FQkPnPFp---~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGG 153 (253)
T COG1117 78 DPKVDVVELRRRVGMV-FQKPNPFP---MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGG 153 (253)
T ss_pred CCCCCHHHHHHHheee-ccCCCCCC---chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChh
Confidence 2345653 33222222 466777777777777633211122222 2333333455667789999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||++|||+|+.+|+||||||||+.|||.+..++-++|.+.
T Consensus 154 QQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eL 195 (253)
T COG1117 154 QQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL 195 (253)
T ss_pred HHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999764
No 19
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2e-34 Score=257.76 Aligned_cols=170 Identities=15% Similarity=0.120 Sum_probs=131.6
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC-----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK----- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~----- 147 (255)
+.+|+++||+|.|++ +. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+ .+++. ..
T Consensus 39 ~~~i~i~nl~k~y~~--~~--~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 39 TVAIDLAGVSKSYGD--KA--VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARARL 111 (340)
T ss_pred ceeEEEEEEEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchHH
Confidence 568999999999987 33 5699999999999999999999999999999999998 99999 44442 21
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
...+|+ +..+...+ ..+++.+++.+....++............+++.+++. .+.++..||+||+||+++|++|+
T Consensus 112 ~~~~ig~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 112 ARARIGV-VPQFDNLD--LEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred HhccEEE-EeCCccCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence 223565 33332211 2256777666544444332211223455678877776 56788999999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|++|||||||++||+.++..++++|.+.
T Consensus 189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l 218 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWERLRSL 218 (340)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999763
No 20
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-34 Score=259.88 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=133.6
Q ss_pred CCeEEecCchhee-hhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----
Q 025293 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y-~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (255)
|.+|+++||++.| ++ +. +|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 1 m~~l~i~~l~~~~~~~--~~--~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 1 MAGLKLQAVRKSYDGK--TQ--VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred CCEEEEEeEEEEeCCC--CE--EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 4579999999999 65 33 5599999999999999999999999999999999998 99999 4554321
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
...+|+ +.++...+ +.+++.+++.+.....+.........+.++++.+++. .++++..|||||+|||+|||+|+
T Consensus 74 ~~r~ig~-v~Q~~~lf--p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~ 150 (356)
T PRK11650 74 ADRDIAM-VFQNYALY--PHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV 150 (356)
T ss_pred HHCCEEE-EeCCcccc--CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 234665 45444322 2368888877665443332222234567788888875 46788899999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++|||||||++||+..+..+.+.|.+
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~ 179 (356)
T PRK11650 151 REPAVFLFDEPLSNLDAKLRVQMRLEIQR 179 (356)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998865
No 21
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2e-34 Score=257.61 Aligned_cols=172 Identities=17% Similarity=0.173 Sum_probs=132.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC-------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------- 147 (255)
||+++||+|.|++......+|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++. +.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence 58999999999632111226699999999999999999999999999999999998 99999 45443 21
Q ss_pred ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
...+|. +.+.. .+. ...++.+++.+.....+.........+.++++.+++. .+.++..|||||||||+||+|
T Consensus 78 ~~~r~~Ig~-v~Q~~-~l~-~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 78 TKARRQIGM-IFQHF-NLL-SSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred HHHhcCEEE-EECCc-ccc-ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 124565 44432 222 1256777776654443333222334567888888875 467889999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l 186 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEI 186 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 22
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-34 Score=257.55 Aligned_cols=170 Identities=16% Similarity=0.168 Sum_probs=135.5
Q ss_pred CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----
Q 025293 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (255)
.|++|+++||++.|++ +. +++|+||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 3 ~~~~l~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 3 QKNFVVLKNITKRFGS--NT--VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred CCcEEEEEeEEEEECC--eE--EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 4678999999999986 33 5599999999999999999999999999999999998 99999 4554321
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
...+|. +.+++..++ .+++.+++.+.....+.........+.++++.+++. .++++..|||||+|||++||+|+
T Consensus 76 ~~r~ig~-vfQ~~~lfp--~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~ 152 (351)
T PRK11432 76 QQRDICM-VFQSYALFP--HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALI 152 (351)
T ss_pred HHCCEEE-EeCCcccCC--CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 234565 444433222 267888877665544433323344667788888775 46778999999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||||||+++||+..+.++.+.|.+
T Consensus 153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 181 (351)
T PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMREKIRE 181 (351)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998865
No 23
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-34 Score=245.99 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=137.2
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC---------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------- 146 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~--------- 146 (255)
+|++++++|.|+... +++||+++|+.||.++|+||||||||||||+|+|++. |+.|. .+++..
T Consensus 2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence 588999999999854 6699999999999999999999999999999999998 99999 555541
Q ss_pred CCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-C-CCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-P-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 147 ~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
....+|. +.+++..+. .+++.+|+.+..+.... + .......+.++++.+.+. .+.|+.+|||||+|||++|||
T Consensus 75 ~~R~VGf-vFQ~YALF~--HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 75 RDRKVGF-VFQHYALFP--HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred hhcceeE-EEechhhcc--cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence 1345776 566655333 37999999887765532 2 223344567777777776 578999999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|++|||||||..||...+.++...+.+
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~ 182 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999888765
No 24
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.7e-34 Score=241.74 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=126.7
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
||+++|+++.|++..+. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~l~~~~l~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQP--ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred CeEEEEEEEEecCCCee--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence 47899999999642123 5599999999999999999999999999999999998 99998 4544311
Q ss_pred ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
...+++ +.++...+ ..+++.+++.+.....+.........+.++++.+++. .+..+..|||||+||+++|++
T Consensus 76 ~~~~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 76 PFLRRHIGM-VFQDHRLL--SDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred HHHHHhceE-EecCcccc--ccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 112454 34332211 1246666655443333322112234567788888875 356778999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|++||+||||++||+.++..+.+++.+
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEE 183 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.9e-34 Score=256.43 Aligned_cols=170 Identities=14% Similarity=0.114 Sum_probs=135.8
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+|+++||++.|++ +. +++|+||+|++||+++|+|||||||||||++|+|+++ |++|+ .+++...
T Consensus 2 ~~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 2 SPYLSIDNIRKRFGA--FT--ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred CcEEEEEEEEEEeCC--eE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 568999999999987 33 5599999999999999999999999999999999998 99999 5554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
...+|+ +.++...++ .+++.+++.+.....+.........+.++++.+++. .+.++..|||||+|||++||+|+.
T Consensus 75 ~r~ig~-v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 75 KRDYGI-VFQSYALFP--NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred HCCEEE-EeCCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 123565 444433222 368888887765544433223344667888888876 367889999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++||||||+++||+..+..+++.+.+.
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l 180 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQL 180 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988653
No 26
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.3e-34 Score=250.28 Aligned_cols=168 Identities=15% Similarity=0.126 Sum_probs=127.8
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
.+|+++||++.|++ +. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 3 ~~i~~~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 75 (303)
T TIGR01288 3 VAIDLVGVSKSYGD--KV--VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLA 75 (303)
T ss_pred cEEEEEeEEEEeCC--eE--EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHH
Confidence 37999999999986 33 5599999999999999999999999999999999998 99999 4444211
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhcc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
...+|+ +.++...+ ..+++.+++.+.....+.........+..+++.+++.. +.++..|||||+||+++|++|+.
T Consensus 76 ~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 76 RVAIGV-VPQFDNLD--PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred hhcEEE-EeccccCC--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 123555 44332211 22566666654333333221111233456778777753 67788999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|||||||++||+.++..+.+++.+
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~ 180 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRS 180 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 27
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-34 Score=256.47 Aligned_cols=169 Identities=14% Similarity=0.079 Sum_probs=131.6
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+|+++||++.|++ +. +|+|+||+|++|++++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 1 m~~l~i~~l~~~~~~--~~--vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 1 MASVTLRNVTKAYGD--VV--ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred CCEEEEEEEEEEeCC--eE--EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHh
Confidence 457999999999986 33 5599999999999999999999999999999999998 99999 4544221
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
...+|+ +.++...++ .+++.+++.+.....+.........+.++++.+++. .+.++..|||||+||+++|++|+.
T Consensus 74 ~~~i~~-v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 74 ERGVGM-VFQSYALYP--HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred HCCEEE-EeCCcccCC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 123555 444432222 257777776654433332222234567788888876 467788999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|||||||++||+..++.+.++|.+
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~ 178 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISR 178 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998865
No 28
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=9.7e-34 Score=238.66 Aligned_cols=168 Identities=18% Similarity=0.190 Sum_probs=124.3
Q ss_pred EEecCchheehhhh--cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293 78 VEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----- 148 (255)
Q Consensus 78 l~v~~lsk~y~~~~--~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----- 148 (255)
|+++||++.|++.. +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 l~~~~l~~~~~~~~~~~~--il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQ--ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEecCCCccee--EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhH
Confidence 47899999997521 22 5699999999999999999999999999999999998 99999 4544211 1
Q ss_pred ------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhh
Q 025293 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 149 ------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la 220 (255)
..+++ +..+...+ ..+++.+++.+.....+.........+.++++.+++.. +..+..||+||+||+++|
T Consensus 76 ~~~~~~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03255 76 LAAFRRRHIGF-VFQSFNLL--PDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA 152 (218)
T ss_pred HHHHHhhcEEE-EeeccccC--CCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHH
Confidence 12444 33322211 12455555554333222211112234567888887753 567789999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|+.+|++|||||||++||+.++..+.+++.+
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 185 (218)
T cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRE 185 (218)
T ss_pred HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 29
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-33 Score=237.76 Aligned_cols=166 Identities=19% Similarity=0.258 Sum_probs=123.1
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCC
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~ 150 (255)
|+++|+++.|++ +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... ...
T Consensus 1 l~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGS--VR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN 73 (213)
T ss_pred CeeeeeEEEeCC--ee--eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence 468999999976 34 5599999999999999999999999999999999998 99998 4444211 112
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCCc
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
+++ +.+... +. ..+++.++..+.....+.........+.++++.+++.. +.++..||+||+||+++|++|+.+|+
T Consensus 74 i~~-v~q~~~-~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 150 (213)
T cd03259 74 IGM-VFQDYA-LF-PHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150 (213)
T ss_pred EEE-EcCchh-hc-cCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 444 333221 11 12455555543322222211112234567788887753 56678999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||+||||++||+.++..+.+++.+
T Consensus 151 ~lllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03259 151 LLLLDEPLSALDAKLREELREELKE 175 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 30
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-33 Score=238.14 Aligned_cols=166 Identities=16% Similarity=0.146 Sum_probs=125.5
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CC
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP 149 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~ 149 (255)
|+++|+++.|++ +. +++|+||+|.+||+++|+||||||||||+++|+|+++ |++|+ .+++... ..
T Consensus 1 i~~~~~~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGD--FE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR 73 (220)
T ss_pred CEEEEEEEEECC--EE--eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence 478999999986 34 5599999999999999999999999999999999998 99998 4444221 11
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCC
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~ 227 (255)
..++ +..+...+ ..+++.+++.+.....+.........+.++++.+++.. +.++..||+||+||+++|++++.+|
T Consensus 74 ~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p 150 (220)
T cd03265 74 RIGI-VFQDLSVD--DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP 150 (220)
T ss_pred cEEE-ecCCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2444 33332211 22455565554433333221122334567888888753 6778899999999999999999999
Q ss_pred cEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++|+||||++||+.+++.+.++|.+
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~ 176 (220)
T cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEK 176 (220)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 31
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-34 Score=228.31 Aligned_cols=173 Identities=13% Similarity=0.215 Sum_probs=144.8
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-CC--CC
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-KP--PD 150 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-~~--~~ 150 (255)
|.++.+++++.+|++ +...+++|+|++|.+||.+.++|||||||||||++++|+.+ |+.|+ ..++.. .. .+
T Consensus 1 M~~l~~~~~sl~y~g--~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae 75 (259)
T COG4525 1 MCMLNVSHLSLSYEG--KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE 75 (259)
T ss_pred CceeehhheEEecCC--cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence 567889999999988 44446699999999999999999999999999999999999 99998 444432 22 24
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
.|. ++++.-.++. +++.+|..+..+..|+.+........+.+..+++. .++++-+|||||+||+.+||||+.+|+
T Consensus 76 rgv-VFQ~~~LlPW--l~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 76 RGV-VFQNEALLPW--LNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred cee-EeccCccchh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 665 4454443333 68889999999999987766666677888888876 567888999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHhhC
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDEKW 255 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~~~ 255 (255)
+|+|||||..||.-.++++.+++.+.|
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw 179 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLW 179 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987765
No 32
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.3e-33 Score=255.25 Aligned_cols=172 Identities=19% Similarity=0.192 Sum_probs=134.8
Q ss_pred cCCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----
Q 025293 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---- 147 (255)
Q Consensus 73 ~~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---- 147 (255)
.++++|+++||++.|++ +. +++++||+|++||+++|+|||||||||||++|+|+++ |++|+ .+++...
T Consensus 10 ~~~~~L~l~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 10 SLSPLVELRGISKSFDG--KE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVP 82 (375)
T ss_pred cCCceEEEEEEEEEECC--eE--EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCC
Confidence 34568999999999986 33 5599999999999999999999999999999999998 99999 4555321
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
...+|+ +.++...++ .+++.+++.+.....+.+.......+..+++.+++. .++++..|||||+|||++||+|
T Consensus 83 ~~~r~ig~-vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 83 AENRHVNT-VFQSYALFP--HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV 159 (375)
T ss_pred HHHCCEEE-EecCcccCC--CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 223565 444433222 367878877655433332222233566788888876 4678889999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|++|||||||++||+..+..+++.|.+.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l 190 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKAL 190 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998653
No 33
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.6e-33 Score=236.70 Aligned_cols=168 Identities=14% Similarity=0.140 Sum_probs=124.5
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
||+++|+++.|++. +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~l~~~~l~~~~~~~-~~--il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 1 MIEFHNVSKAYPGG-VA--ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred CEEEEeeeEEeCCC-ce--eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence 47899999999421 33 5599999999999999999999999999999999998 99998 4444211
Q ss_pred ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhh
Q 025293 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~ 222 (255)
....++ +..+.. ++ ..+++.++..+.....+.........+.++++.+++.. +..+..||+||+||+++|++
T Consensus 75 ~~~~~~i~~-~~q~~~-~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 75 PLLRRRIGV-VFQDFR-LL-PDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred HHHHhheEE-EecChh-hc-cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 112344 333322 11 12455555544333222211112234567788887753 46678999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|+++||||||++||+.++..+.++|.+
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 182 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKR 182 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 34
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-33 Score=238.52 Aligned_cols=170 Identities=18% Similarity=0.218 Sum_probs=125.2
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCCeEE
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVAT 153 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~ 153 (255)
|+++||++.|++......+++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... ....++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~i~~ 77 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGPDRGY 77 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccCcEEE
Confidence 4689999999751100115699999999999999999999999999999999998 99998 4444221 233454
Q ss_pred EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEE
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ill 231 (255)
+.+....+ ..+++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|++|+.+|+++|
T Consensus 78 -v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 154 (220)
T cd03293 78 -VFQQDALL--PWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL 154 (220)
T ss_pred -Eecccccc--cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 33332211 1245555555433333322112234456788888775 356778999999999999999999999999
Q ss_pred EcCCCCCCChhHHHHHHHHHHh
Q 025293 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||||++||+.++..+.++|.+
T Consensus 155 LDEPt~~LD~~~~~~~~~~l~~ 176 (220)
T cd03293 155 LDEPFSALDALTREQLQEELLD 176 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999865
No 35
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.9e-34 Score=235.21 Aligned_cols=167 Identities=17% Similarity=0.195 Sum_probs=140.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC---CCCe
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK---PPDV 151 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~---~~~~ 151 (255)
++++++|+|+||+.. +++|+||++++|++.|++|+|||||||++|+|+|++. |++|+ .+++. +. ...+
T Consensus 2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI 74 (300)
T ss_pred ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence 589999999999954 6699999999999999999999999999999999998 99999 44443 22 2345
Q ss_pred EEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCCcE
Q 025293 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~i 229 (255)
|+...--|.+. .+++.+.+.++....|++.......+..+++++.+.. ..++..||.|++|++.+..+++++|++
T Consensus 75 GyLPEERGLy~---k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 75 GYLPEERGLYP---KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred ccChhhhccCc---cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 55322233332 3678888889999999987777778888999988864 567889999999999999999999999
Q ss_pred EEEcCCCCCCChhHHHHHHHHHHh
Q 025293 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 230 lllDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||||||+||||.+.+.+.+.+.+
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~ 175 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFE 175 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHH
Confidence 999999999999999999988765
No 36
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-33 Score=237.99 Aligned_cols=172 Identities=13% Similarity=0.082 Sum_probs=127.5
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----- 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----- 148 (255)
++|+++||++.|++......+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence 479999999999742111125699999999999999999999999999999999998 99999 4554221 1
Q ss_pred ------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 149 ------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la 220 (255)
..+++ +.++.. ++ ..+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|
T Consensus 81 ~~~~~~~~i~~-v~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 81 KAELRNQKLGF-IYQFHH-LL-PDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HHHHHhccEEE-EecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 23454 444322 21 1246666655433222222112223456788888875 3566789999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++++.+|++||+||||++||+.++..+.++|.+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGE 190 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 37
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.2e-33 Score=252.74 Aligned_cols=167 Identities=13% Similarity=0.179 Sum_probs=133.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC--Cc-cCCCCCC------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--AS-SFDSQVK------ 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~--G~-~~~~~~~------ 147 (255)
.|+++||+|.|++ +. +++|+||+|.+||+++|+|||||||||||++|+|+++ |++ |+ .+++...
T Consensus 5 ~l~~~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGA--NT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEEECC--eE--EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 4789999999986 33 5699999999999999999999999999999999998 999 99 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
...+|. +.++.. ++ ..+++.+++.+.....+.+.......+.++++.+++. .++++..|||||+|||++|++|+.
T Consensus 78 ~r~ig~-vfQ~~~-l~-p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~ 154 (362)
T TIGR03258 78 KRGLAL-LFQNYA-LF-PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI 154 (362)
T ss_pred HCCEEE-EECCcc-cC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 134565 444432 22 2368888887765544443222334567788888876 467889999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|||||||++||+..+.++++.|.+
T Consensus 155 ~P~llLLDEP~s~LD~~~r~~l~~~l~~ 182 (362)
T TIGR03258 155 EPDVLLLDEPLSALDANIRANMREEIAA 182 (362)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998865
No 38
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-33 Score=250.80 Aligned_cols=170 Identities=16% Similarity=0.176 Sum_probs=129.2
Q ss_pred eEEecCchheehhh--hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 77 VVEARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~--~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
||+++||+++|++. .+. +|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 1 mi~i~~l~~~y~~~~~~~~--il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~ 75 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIH--ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEK 75 (343)
T ss_pred CEEEEeEEEEeCCCCCceE--EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHH
Confidence 58999999999721 123 5699999999999999999999999999999999998 99999 4544211
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la 220 (255)
...+|+ +.+... ++ ..+++.++..+.....+.........+.++++.+++. .+.++..|||||+||+++|
T Consensus 76 ~~~~~~~~ig~-v~q~~~-l~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lA 152 (343)
T PRK11153 76 ELRKARRQIGM-IFQHFN-LL-SSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIA 152 (343)
T ss_pred HHHHHhcCEEE-EeCCCc-cC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 123555 443322 21 1256667666554433432222233556788888875 3567889999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l 186 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDI 186 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753
No 39
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-33 Score=238.71 Aligned_cols=166 Identities=18% Similarity=0.247 Sum_probs=123.7
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (255)
|+++||++.|++ +. +++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 1 l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (235)
T cd03261 1 IELRGLTKSFGG--RT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY 73 (235)
T ss_pred CeEEEEEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence 478999999976 34 5599999999999999999999999999999999998 99999 4444211
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhh
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~ 222 (255)
...+++ +.+... +. ..+++.+++.+..... +.........+..+++.+++.. +.++..|||||+||+++|++
T Consensus 74 ~~~~~i~~-v~q~~~-~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 74 RLRRRMGM-LFQSGA-LF-DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred HHhcceEE-EccCcc-cC-CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 112444 333322 11 1246656554432211 1111111234567788888753 56788999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|++||+||||++||+.++..+.+++.+
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 181 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRS 181 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 40
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-33 Score=234.16 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=125.4
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----CCCeE
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDVA 152 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----~~~~g 152 (255)
++++|+++.|++ +. +++|+||+|.+|++++|+||||||||||+++|+|+++ |++|+ .+++... ....+
T Consensus 1 l~~~~l~~~~~~--~~--~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR--VT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG 73 (210)
T ss_pred CEEEEEEEEECC--EE--EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence 478999999976 34 4599999999999999999999999999999999998 99999 4554321 12344
Q ss_pred EEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEE
Q 025293 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 153 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~il 230 (255)
+ +.++...+ ..+++.+++.+.....+.........+.++++.+++. .+.++..||+||+||+++|++++.+|+++
T Consensus 74 ~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l 150 (210)
T cd03269 74 Y-LPEERGLY--PKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL 150 (210)
T ss_pred E-eccCCcCC--cCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4 33332211 1246666655443333332222233456778888775 35667899999999999999999999999
Q ss_pred EEcCCCCCCChhHHHHHHHHHHh
Q 025293 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 llDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+||||++||+.++..+.+++.+
T Consensus 151 llDEP~~~LD~~~~~~~~~~l~~ 173 (210)
T cd03269 151 ILDEPFSGLDPVNVELLKDVIRE 173 (210)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999865
No 41
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-33 Score=240.96 Aligned_cols=167 Identities=13% Similarity=0.150 Sum_probs=126.1
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCCeE
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVA 152 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g 152 (255)
||+++||++.|++ +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... ....|
T Consensus 1 ml~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGG--KP--ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG 73 (255)
T ss_pred CEEEEEEEEEeCC--ee--eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence 4789999999976 33 4599999999999999999999999999999999998 99999 4544221 12345
Q ss_pred EEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCCcEE
Q 025293 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 153 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~il 230 (255)
+ +.+....+ ..+++.+++.+.....+.........+.++++.+++.. +.++..|||||+||+++|++|+.+|++|
T Consensus 74 ~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll 150 (255)
T PRK11248 74 V-VFQNEGLL--PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150 (255)
T ss_pred E-EeCCCccC--CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4 33332211 12455555544332223221112234667888888753 5677899999999999999999999999
Q ss_pred EEcCCCCCCChhHHHHHHHHHHh
Q 025293 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 llDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+||||++||+.++..+.++|.+
T Consensus 151 lLDEPt~~LD~~~~~~l~~~L~~ 173 (255)
T PRK11248 151 LLDEPFGALDAFTREQMQTLLLK 173 (255)
T ss_pred EEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 42
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.1e-33 Score=235.29 Aligned_cols=171 Identities=16% Similarity=0.083 Sum_probs=124.6
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P------ 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~------ 148 (255)
+|+++||++.|++......+++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence 47899999999642111125599999999999999999999999999999999998 99999 4444211 0
Q ss_pred -----CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 149 -----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~ 221 (255)
..+++ +.++...+. .+++.++..+...............+.++++.+++. .+..+..||+||+||+++|+
T Consensus 78 ~~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 78 AKLRNKKLGF-IYQFHHLLP--DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HHHHHhcEEE-EecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 22444 443322111 245555554432222221111223456778888775 35677899999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+|++|||||||++||+.++..+.++|.+
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 186 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864
No 43
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6e-33 Score=235.43 Aligned_cols=173 Identities=17% Similarity=0.098 Sum_probs=126.4
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P---- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~---- 148 (255)
+++|+++||++.|++......+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHH
Confidence 3589999999999752111115599999999999999999999999999999999998 99998 4444211 1
Q ss_pred -------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhh
Q 025293 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVED 219 (255)
Q Consensus 149 -------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~l 219 (255)
..+++ +..... +. ..+++.+++.+.....+.........+.++++.+++.. +..+..||+||+||+++
T Consensus 81 ~~~~~~~~~i~~-~~q~~~-l~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~l 157 (228)
T PRK10584 81 ARAKLRAKHVGF-VFQSFM-LI-PTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVAL 157 (228)
T ss_pred HHHHHHhheEEE-EEcccc-cC-CCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHH
Confidence 12444 333322 21 12455555543322222211122334567788887753 56788999999999999
Q ss_pred hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus 158 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 191 (228)
T PRK10584 158 ARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191 (228)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999865
No 44
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.2e-33 Score=235.46 Aligned_cols=171 Identities=16% Similarity=0.155 Sum_probs=127.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------C
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~ 148 (255)
||+++||++.|++..+...+++|+||+|++|++++|+|+||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence 47899999999763111115599999999999999999999999999999999998 99998 4444221 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
..+++ +..+.. ++ ..+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|++++.+
T Consensus 78 ~~i~~-~~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (218)
T cd03266 78 RRLGF-VSDSTG-LY-DRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHD 154 (218)
T ss_pred hhEEE-ecCCcc-cC-cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcC
Confidence 22444 333322 11 1245666655443333322212234556788888875 3677889999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|++||+||||++||+.+++.+.+++.+
T Consensus 155 p~illlDEPt~~LD~~~~~~l~~~l~~ 181 (218)
T cd03266 155 PPVLLLDEPTTGLDVMATRALREFIRQ 181 (218)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 45
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-33 Score=252.22 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=133.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
+++|+++|+++.|++ .. +++|+||+|++||+++|+||||||||||||+|+|+.+ |++|+ .+++...
T Consensus 17 ~~~l~l~~v~~~~~~--~~--~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--QH--AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPPY 89 (377)
T ss_pred CceEEEEeEEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 468999999999986 33 5599999999999999999999999999999999998 99999 5555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
...+|+ +.+++..+ +.+++.+|+.+.....+.........+.++++.+++. .+.++..|||||+|||+|||+|+.
T Consensus 90 ~r~ig~-vfQ~~~lf--p~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 90 QRPINM-MFQSYALF--PHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred HCCEEE-EeCCCccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 224665 45444322 2368888887665444333222234566788888875 467888999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|||||||++||+..+..+.+.+.+
T Consensus 167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 194 (377)
T PRK11607 167 RPKLLLLDEPMGALDKKLRDRMQLEVVD 194 (377)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998877654
No 46
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.6e-33 Score=246.30 Aligned_cols=168 Identities=17% Similarity=0.180 Sum_probs=130.5
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------C
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~ 148 (255)
+++++|++|+|++ +. +|+|+||+|++||++||+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 2 ~l~~~~l~~~~~~--~~--~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGT--QN--ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEECC--EE--EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence 5899999999986 33 5699999999999999999999999999999999998 99999 4444221 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
..+|+ +..... ++ ..+++.+++.+....++.+..........+++.+++. .++++..||+||+||+++|++|+.+
T Consensus 75 ~~ig~-~~q~~~-l~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 75 RNIGY-LPEHNP-LY-LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred hceEE-ecCCCC-CC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 23555 333322 21 2256667666555444433222234567788888876 3677889999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|++|||||||++||+.+++.+++++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~ 179 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNI 179 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998763
No 47
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.9e-33 Score=235.29 Aligned_cols=168 Identities=18% Similarity=0.160 Sum_probs=125.1
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CC
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP 149 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~ 149 (255)
|+++||++.|++..++ +++|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++... ..
T Consensus 1 l~~~~l~~~~~~~~~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (220)
T cd03263 1 LQIRNLTKTYKKGTKP--AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAARQ 75 (220)
T ss_pred CEEEeeEEEeCCCCce--eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHHhh
Confidence 4789999999752122 5699999999999999999999999999999999998 99999 4544321 11
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~ 227 (255)
..++ +..+...+ ...++.+++.+.....+.........+.++++.+++. .+.++..||+||+||+++|++++.+|
T Consensus 76 ~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 76 SLGY-CPQFDALF--DELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred hEEE-ecCcCCcc--ccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 2444 33332211 1245656655443333322211223456778877775 35677899999999999999999999
Q ss_pred cEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++||+||||++||+.+++.+.+++.+
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~ 178 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILE 178 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 48
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-33 Score=246.77 Aligned_cols=179 Identities=16% Similarity=0.168 Sum_probs=128.2
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc-cCCCCCc-cCCCCC-CC---
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKAS-SFDSQV-KP--- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~-~~p~~G~-~~~~~~-~~--- 148 (255)
|.+|+++||++.|+.....+.+|+||||+|++||++||+|+||||||||+++|+|+++. ..|++|+ .+++.. ..
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 45799999999997632223367999999999999999999999999999999999851 0127787 444432 11
Q ss_pred --------CCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccc-----CCccCCCCCcccc
Q 025293 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVG 214 (255)
Q Consensus 149 --------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lS~G~k 214 (255)
..+++ +.++.+....+.+++.++........ +.........+.++++.+++. .+.++.+|||||+
T Consensus 81 ~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~ 159 (326)
T PRK11022 81 KERRNLVGAEVAM-IFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMS 159 (326)
T ss_pred HHHHHHhCCCEEE-EecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHH
Confidence 13555 55544321222234333332222221 222122234567888888885 3578899999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||+||++|+.+|++||+||||++||+.++.++.++|.+.
T Consensus 160 QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l 199 (326)
T PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL 199 (326)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 49
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.1e-33 Score=233.72 Aligned_cols=167 Identities=14% Similarity=0.138 Sum_probs=122.0
Q ss_pred EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-------C
Q 025293 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-------P 149 (255)
Q Consensus 79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-------~ 149 (255)
+++||++.|++..+. +++++||+|++|+++||+||||||||||+++|+|+++ |++|+ .+++... . .
T Consensus 1 ~~~~l~~~~~~~~~~--il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 1 ELKNLSFSYPDGARP--ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred CceeEEEecCCCCee--eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHHHh
Confidence 368999999752122 5699999999999999999999999999999999998 99998 4444211 1 1
Q ss_pred CeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293 150 DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 150 ~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
.+++ +..+.. ..+ ..++.++..+.....+.........+.++++.+++. .+.++..||+||+||+++|++|+.+
T Consensus 76 ~i~~-~~q~~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 76 KVGL-VFQNPDDQFF--GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred hceE-EecChhhhcC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 2344 333321 111 145555554332222221111223456778878775 3567889999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|++||+||||++||+..+..+.++|.+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999865
No 50
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.2e-34 Score=230.11 Aligned_cols=170 Identities=19% Similarity=0.258 Sum_probs=130.9
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (255)
|.++.++||.|+|+. ++++ ++|||+|++||+|||+|||||||||.+.|+.|+.+ |++|+ .+++....
T Consensus 2 ~~~L~a~~l~K~y~k--r~Vv--~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 2 MSTLVAENLAKSYKK--RKVV--NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH 74 (243)
T ss_pred CcEEEehhhhHhhCC--eeee--eeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence 568999999999998 5555 99999999999999999999999999999999998 99999 44443211
Q ss_pred ----CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC--ccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la 220 (255)
--+|+ +.+.. .++ ..+++.+|+....+....... .....+.++++.|.+. .+.+...||||||+|+.||
T Consensus 75 ~RArlGigY-LpQE~-SIF-r~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIA 151 (243)
T COG1137 75 KRARLGIGY-LPQEA-SIF-RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA 151 (243)
T ss_pred HHhhcCccc-ccccc-hHh-hcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHH
Confidence 11333 22211 111 246777777666655442111 2233456788888876 4566779999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+|+.+|++++|||||+|.||.+...+..++.+.
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L 185 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHL 185 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHH
Confidence 9999999999999999999999999999888653
No 51
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-33 Score=235.99 Aligned_cols=169 Identities=18% Similarity=0.186 Sum_probs=125.7
Q ss_pred eEEecCchheehhhh--cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~--~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
||+++|+++.|++.. ++ +++++||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~--il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 75 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVT--ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGK 75 (233)
T ss_pred CeEEecceEEccCCCCcee--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHH
Confidence 478999999997620 03 5599999999999999999999999999999999998 99998 4544321
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhh
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la 220 (255)
...+++ +..+.. .+ ..+++.++..+.....+.........+.++++.+++.. +.++..||+||+||+++|
T Consensus 76 ~~~~~~~~i~~-~~q~~~-~~-~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 152 (233)
T cd03258 76 ELRKARRRIGM-IFQHFN-LL-SSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIA 152 (233)
T ss_pred HHHHHHhheEE-EccCcc-cC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHH
Confidence 112343 333322 11 12466565554333223211112234567788887753 567789999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++++.+|+++||||||++||+.++..+.+++.+
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 185 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRD 185 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 52
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=5.6e-33 Score=233.20 Aligned_cols=166 Identities=16% Similarity=0.140 Sum_probs=123.5
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-C-----CCC
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-K-----PPD 150 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-~-----~~~ 150 (255)
|+++|+++.|++ +. +++|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++.. . ...
T Consensus 1 i~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGN--VT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD 73 (213)
T ss_pred CEEEeeEEEECC--ee--eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence 478999999987 34 5599999999999999999999999999999999998 99998 444421 1 112
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
+++ +..... +. ...++.+++.+.....+.........+.++++.+++. .+.++..||+||+||+++|++++.+|+
T Consensus 74 i~~-~~q~~~-~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 150 (213)
T cd03301 74 IAM-VFQNYA-LY-PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150 (213)
T ss_pred EEE-EecChh-hc-cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 344 333322 11 1245555554432222221111223456677877775 466788999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|+||||++||+.++..+.++|.+
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKR 175 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 53
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-33 Score=242.85 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=129.3
Q ss_pred eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
.|+++||++.|++... ...+|+|+||+|.+||++||+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence 4899999999974210 0125699999999999999999999999999999999998 99999 4544221
Q ss_pred ---CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc----CCccCCCCCcccccchhh
Q 025293 148 ---PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 ---~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lS~G~kqrv~l 219 (255)
...+|+ +.++. +.+.. .++.+++.+.....++........+..+++.+++. .+.++..|||||+||++|
T Consensus 79 ~~~~~~ig~-v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 79 SDIRKKVGL-VFQYPEYQLFE--ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred HHHhhceEE-EecCchhcccc--ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHH
Confidence 123455 44432 22221 46666665544333332222223467788888885 467788999999999999
Q ss_pred hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l 190 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL 190 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998653
No 54
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.98 E-value=6.1e-33 Score=231.80 Aligned_cols=163 Identities=17% Similarity=0.121 Sum_probs=122.6
Q ss_pred EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----CCCeE
Q 025293 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPDVA 152 (255)
Q Consensus 79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----~~~~g 152 (255)
+++||++.|++. +. +++|+||+|++|++++|+|||||||||||++|+|+++ |++|+ .+++... ...+|
T Consensus 1 ~~~~l~~~~~~~-~~--~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i~ 74 (205)
T cd03226 1 RIENISFSYKKG-TE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSIG 74 (205)
T ss_pred CcccEEEEeCCc-Cc--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcceE
Confidence 468999999751 12 5699999999999999999999999999999999998 99998 4444321 12345
Q ss_pred EEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcE
Q 025293 153 TVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 153 ~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~i 229 (255)
+ +.++. +.+. ..++.++..+.....+ .....+.++++.+++. .+.++..||+||+||+++|++++.+|++
T Consensus 75 ~-~~q~~~~~~~--~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 75 Y-VMQDVDYQLF--TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred E-EecChhhhhh--hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 4 33332 1111 1355555443222111 1224567788888875 3567889999999999999999999999
Q ss_pred EEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 230 VIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 230 lllDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||||++||+.+++.+.+++.+.
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~ 172 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIREL 172 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998753
No 55
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.98 E-value=7.8e-33 Score=236.00 Aligned_cols=167 Identities=18% Similarity=0.136 Sum_probs=124.1
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P------ 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~------ 148 (255)
+|+++|+++.|++ +. +++++||+|.+|+++||+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 ~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGA--RR--ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence 4789999999976 34 5599999999999999999999999999999999998 99998 4444211 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
...++ +.++.... ...++.+++.......+.........+.++++.+++. .+.++..||+||+||+++|++++.+
T Consensus 74 ~~i~~-~~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 74 ARLGV-VFQQPTLD--LDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred hhEEE-eCCCCCCc--ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 12343 33322111 1245555554332222221111223456778877775 3567889999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|+||||++||+.+++.+.+++.+
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 56
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=9.8e-33 Score=235.82 Aligned_cols=168 Identities=17% Similarity=0.230 Sum_probs=124.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CC
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~ 149 (255)
+|+++||++.|++ +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... ..
T Consensus 2 ~l~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGD--FV--ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEEeEEEEECC--EE--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 5899999999986 34 5599999999999999999999999999999999998 99998 4444211 12
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHHhcCC----CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
..++ +.++.. +. ..+++.++..+.....+. ........+..+++.+++. .+.++..||+||+||+++|++|
T Consensus 75 ~i~~-v~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 75 NVGF-VFQHYA-LF-RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred ceEE-EecCCc-cc-CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 2444 333322 11 124555555443222211 0011122345677877775 3567789999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|++||+||||++||+.+++.+.+++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 182 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRL 182 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998753
No 57
>PRK10908 cell division protein FtsE; Provisional
Probab=99.98 E-value=1.1e-32 Score=233.07 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=123.6
Q ss_pred eEEecCchhee-hhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC------
Q 025293 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------ 147 (255)
Q Consensus 77 ~l~v~~lsk~y-~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------ 147 (255)
||+++|+++.| ++ +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++. +.
T Consensus 1 ~l~~~~l~~~~~~~--~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 1 MIRFEHVSKAYLGG--RQ--ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred CEEEEeeEEEecCC--Ce--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence 47899999999 54 33 5599999999999999999999999999999999998 99999 44442 11
Q ss_pred ----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~ 221 (255)
....++ +.++..... ..++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+
T Consensus 74 ~~~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 74 VPFLRRQIGM-IFQDHHLLM--DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR 150 (222)
T ss_pred HHHHHhheEE-EecCccccc--cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHH
Confidence 112444 333322111 145555554433222222111122345677777765 35677899999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEE 182 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998875
No 58
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.98 E-value=1.7e-32 Score=235.67 Aligned_cols=170 Identities=15% Similarity=0.187 Sum_probs=125.5
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
|++|+++||++.|++ +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 m~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 1 MSAIEVKNLVKKFHG--QT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSL 73 (250)
T ss_pred CCcEEEeceEEEECC--ee--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccccc
Confidence 357999999999986 33 5599999999999999999999999999999999998 99998 4443211
Q ss_pred ----------CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccc
Q 025293 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~k 214 (255)
....++ +..+...+ ...++.+++.+.... .+.........+..+++.+++. .+.++..||+||+
T Consensus 74 ~~~~~~~~~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~ 150 (250)
T PRK11264 74 SQQKGLIRQLRQHVGF-VFQNFNLF--PHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQ 150 (250)
T ss_pred cchhhHHHHhhhhEEE-EecCcccC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHH
Confidence 112344 33332211 124555555442221 1211111223456677877775 3567889999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++|+.+|++||+||||++||+.++..+.+++.+.
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 190 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988753
No 59
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.98 E-value=7.3e-33 Score=232.57 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=121.7
Q ss_pred EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCCeEEE
Q 025293 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATV 154 (255)
Q Consensus 79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~ 154 (255)
+++||++.|++ +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... ....++
T Consensus 1 ~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~- 72 (213)
T cd03235 1 EVEDLTVSYGG--HP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGY- 72 (213)
T ss_pred CcccceeEECC--EE--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEE-
Confidence 46899999976 33 5599999999999999999999999999999999998 99999 4554321 223454
Q ss_pred EecCCCCCCCccCCcccChHHHHHhc-CC---CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~-~~---~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
+.++.........++.+++.+..... .. ........+..+++.+++. .+.++..||+||+||+++|++|+.+|+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 152 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD 152 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 33332211111134545443321110 00 0111223456778887775 456788999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||+||||++||+.++..+.++|.+
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~ 177 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRE 177 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 60
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.98 E-value=1.1e-32 Score=234.28 Aligned_cols=167 Identities=21% Similarity=0.261 Sum_probs=123.7
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (255)
|+++||++.|++ +. +++|+||+|.+|+++||+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGK--RK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCC--EE--eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence 478999999986 33 5599999999999999999999999999999999998 99999 4444211
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
....++ +.++.. ++ ..+++.++........+.........+..+++.+++. .+..+..||+||+||+++|++++.
T Consensus 74 ~~~i~~-~~q~~~-~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 74 RLGIGY-LPQEAS-IF-RKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred hccEEE-ecCCcc-cc-ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 112444 333221 11 1245555554433222221111223455777777775 356778999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++||+||||++||+.+++.+.+++.+.
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~ 179 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKIL 179 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998753
No 61
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.8e-32 Score=244.05 Aligned_cols=176 Identities=15% Similarity=0.121 Sum_probs=130.0
Q ss_pred CCeEEecCchheehhhh------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-
Q 025293 75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV- 146 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~------~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~- 146 (255)
+++|+++||++.|+... ..+.+++||||+|.+||++||+|+||||||||+++|+|+++ |++|+ .+++..
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 46899999999996311 11336799999999999999999999999999999999998 99998 454422
Q ss_pred C----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccc---CCccCCCCCcc
Q 025293 147 K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (255)
Q Consensus 147 ~----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G 212 (255)
. ...++. +.++.+......+++.+++....... +.........+.++++.+++. .+.++..||||
T Consensus 80 ~~~~~~~~~~~r~~i~~-v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgG 158 (327)
T PRK11308 80 LKADPEAQKLLRQKIQI-VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG 158 (327)
T ss_pred CcCCHHHHHHHhCCEEE-EEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHH
Confidence 1 123555 55543222222234444333222221 222222234567888888885 36788999999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||++||++|+.+|++||+||||++||...+.++.++|.+.
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l 200 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL 200 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 62
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.98 E-value=1.1e-32 Score=247.65 Aligned_cols=168 Identities=13% Similarity=0.168 Sum_probs=129.7
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CC
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~ 149 (255)
+|+++||++.|++ +. +++|+||+|.+||+++|+||||||||||||+|+|+++ |++|+ .+++... ..
T Consensus 2 ~L~i~~l~~~~~~--~~--~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGR--TQ--VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEEEEEEeCC--eE--EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence 4899999999987 33 5699999999999999999999999999999999998 99999 4554321 12
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHHhc----CCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
.+|+ +.++...+ +.+++.+++.+..... +.........+.++++.+++. .+.++..|||||+|||++|++|
T Consensus 75 ~i~~-v~Q~~~l~--p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 75 KVGF-VFQHYALF--RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred CEEE-EecCcccC--CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 4565 44443222 2257777666543321 111111234567788888876 4678899999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|++||+||||++||+..+..+.++|.+.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l 182 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQL 182 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988753
No 63
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.98 E-value=1.5e-32 Score=244.99 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=130.9
Q ss_pred CCeEEecCchheehhhh---------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC
Q 025293 75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~---------~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~ 144 (255)
.++|+++||++.|+... ....+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+ .+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence 46899999999996311 11336699999999999999999999999999999999998 99998 4544
Q ss_pred CCC-----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhc--CCCCCccHHHHHHHHHhhccc---CCccCCC
Q 025293 145 QVK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAPWTFNPLLLLNCLKNLRNQ---GSVYAPS 208 (255)
Q Consensus 145 ~~~-----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~---~~~~~~~ 208 (255)
... ...+++ +.++.+......+++.+++.+..... +.........+.++++.+++. .+.++..
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~-v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~ 161 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQM-IFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE 161 (331)
T ss_pred EECCcCCHHHHHHHhCceEE-EecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence 321 123555 55543211122246666555433222 122112233456788888884 4688899
Q ss_pred CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||||+||++||++|+.+|++||+||||++||+.++.++.++|.+.
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998753
No 64
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.98 E-value=1.3e-32 Score=231.15 Aligned_cols=167 Identities=17% Similarity=0.136 Sum_probs=123.6
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-------
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P------- 148 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~------- 148 (255)
|+++|+++.|++. +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 l~~~~l~~~~~~~-~~--~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 74 (214)
T cd03292 1 IEFINVTKTYPNG-TA--ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAIP 74 (214)
T ss_pred CEEEEEEEEeCCC-ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHHH
Confidence 4689999999642 23 5599999999999999999999999999999999998 99998 4444311 1
Q ss_pred ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
...++ +.++.. ++ ..+++.++..+.....+.........+.++++.+++. .+.++..||+||+||+++|+++
T Consensus 75 ~~~~~i~~-v~q~~~-~~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 75 YLRRKIGV-VFQDFR-LL-PDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred HHHHheEE-EecCch-hc-cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 12344 333322 11 1245666555443333322111223456777777775 3567789999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|+++|+||||++||+.+++.+.+++.+
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 181 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKK 181 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 65
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.98 E-value=1.9e-32 Score=238.07 Aligned_cols=169 Identities=15% Similarity=0.232 Sum_probs=125.8
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC-----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK----- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~----- 147 (255)
+++|+++||++.|++ +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++. +.
T Consensus 5 ~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 5 ANLVDMRGVSFTRGN--RC--IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS 77 (269)
T ss_pred cceEEEeCeEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence 458999999999976 33 4599999999999999999999999999999999998 99999 44442 11
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l 219 (255)
...+++ +.+... +. ..+++.+++.+..... ..........+..+++.+++. .+.++..|||||+||+++
T Consensus 78 ~~~~~~~~i~~-v~q~~~-~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l 154 (269)
T PRK11831 78 RLYTVRKRMSM-LFQSGA-LF-TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAAL 154 (269)
T ss_pred hHHHHhhcEEE-Eecccc-cC-CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 112444 333322 11 1245555554432211 111111122455677888775 356788999999999999
Q ss_pred hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|++|+.+|++||+||||++||+.++..+.+++.+
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE 188 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 66
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.98 E-value=2.3e-32 Score=231.55 Aligned_cols=171 Identities=18% Similarity=0.213 Sum_probs=122.9
Q ss_pred eEEecCchheehhhh--cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~--~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
+|+++||++.|++.. .. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 75 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVK--ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRR 75 (228)
T ss_pred CeEEEeeeEeccCCCccee--eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchh
Confidence 478999999997521 13 5599999999999999999999999999999999998 99998 4444211
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCcc-HHH-HHHHHHhhccc---CCccCCCCCcccccch
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLL-LLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~l~~~---~~~~~~~lS~G~kqrv 217 (255)
....++ +.+.........+++.+++.+.....+...... ... ..++++.+++. .+..+..||+||+||+
T Consensus 76 ~~~~~~~~i~~-~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 76 LRKIRRKEIQM-VFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred hHHHhhccEEE-EecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH
Confidence 112444 333321111112455555544322222111111 111 13677777773 3567889999999999
Q ss_pred hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|++++.+|++|||||||++||+.+++.+.+++.+
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999865
No 67
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.98 E-value=1.7e-32 Score=249.53 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=127.9
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC-----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK----- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~----- 147 (255)
|++|+++||++.|++ +. +|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++. ..
T Consensus 1 ~~~L~~~nls~~y~~--~~--vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 1 MPMIDVSDLSVEFGD--TT--VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred CceEEEeeEEEEECC--EE--EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence 458999999999987 44 5599999999999999999999999999999999998 99999 44442 21
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHHhc--CCC--CCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAP--WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~--~~~--~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l 219 (255)
....|. +.+.....+ .+++.+++.+.+..+ .+. .......+..+++.+++. .++++..||+|||||++|
T Consensus 74 ~~~~~ig~-v~q~~~l~~--~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 74 AASRRVAS-VPQDTSLSF--EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLL 150 (402)
T ss_pred HHhcceEE-EccCCCCCC--CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 123555 333322111 245555444322111 111 112234567788888876 367788999999999999
Q ss_pred hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|++|+.+|++|||||||++||+.++.+++++|.+.
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l 185 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRL 185 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998764
No 68
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=2e-32 Score=228.67 Aligned_cols=164 Identities=19% Similarity=0.208 Sum_probs=124.5
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------C
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~ 148 (255)
||+++|+++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 ~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDE--RI--LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEECC--EE--EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence 5789999999986 33 5599999999999999999999999999999999998 99998 4444221 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
...++ +.... .+ ...+++.++........+. .....+.++++.+++. .+.++..||+||+||+++|++++.+
T Consensus 74 ~~~~~-~~~~~-~~-~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 74 QDLLY-LGHQP-GI-KTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred hheEE-eCCcc-cc-CcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 12333 22221 11 1124555555443322221 2234566788888875 4677889999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|+||||++||+.++..+.++|.+
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~ 174 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQ 174 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 69
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.98 E-value=1.5e-32 Score=229.35 Aligned_cols=164 Identities=12% Similarity=0.028 Sum_probs=122.8
Q ss_pred ecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----------
Q 025293 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----------- 147 (255)
Q Consensus 80 v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----------- 147 (255)
++||++.|++ +. +++|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 i~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGD--KI--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECC--EE--EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence 4789999986 34 5599999999999999999999999999999999998 99998 4444321
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
....++ +..+. .++ ...++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|++|+
T Consensus 74 ~~~~i~~-~~q~~-~~~-~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 74 RREKLGY-LFQNF-ALI-ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred HHhCeeE-Eecch-hhc-cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 112444 33322 111 1245555555433222222222234566788888774 35778899999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~ 179 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLE 179 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 70
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.6e-32 Score=242.35 Aligned_cols=172 Identities=12% Similarity=0.131 Sum_probs=129.8
Q ss_pred eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
+|+++||++.|++... ...+|+|+||+|.+||+++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence 5899999999975211 0125699999999999999999999999999999999998 99999 4432110
Q ss_pred -------------------------CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc
Q 025293 148 -------------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 201 (255)
Q Consensus 148 -------------------------~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 201 (255)
...+|+ +.++. ..+.. .++.+++.+.....+.........+.++++.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~-v~Q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGV-VFQFAEYQLFE--QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEE-EeeCccccccc--ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 112455 44432 12221 36666665544444443323334567888888885
Q ss_pred ---CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 202 ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 202 ---~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+.++..|||||+||+++|++|+.+|++||+||||++||+..+..+.++|.+.
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l 211 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL 211 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999998753
No 71
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.7e-32 Score=234.74 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=124.7
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
++++||++.|++. +. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 l~~~~l~~~~~~~-~~--~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (242)
T cd03295 1 IEFENVTKRYGGG-KK--AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVELR 74 (242)
T ss_pred CEEEEEEEEeCCc-ce--EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHhh
Confidence 4689999999761 22 5699999999999999999999999999999999998 99999 4554321 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC----CccCCCCCcccccchhhhhhhc
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~lS~G~kqrv~la~~l~ 224 (255)
..+++ +..+...+ ..+++.++..+.....+.........+.++++.+++.. +.++..||+||+||+++|++++
T Consensus 75 ~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 75 RKIGY-VIQQIGLF--PHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred cceEE-EccCcccc--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 12343 33332211 12466666554433322211112334567888888763 5677899999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||+||||++||+.++..+.+++.+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~ 180 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKR 180 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998875
No 72
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=2.5e-32 Score=248.27 Aligned_cols=152 Identities=14% Similarity=0.185 Sum_probs=118.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-C-----------CCCeEEEEecCCCCC
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-K-----------PPDVATVLPMDGFHL 162 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-~-----------~~~~g~~i~~~~~~~ 162 (255)
+++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+ .+++.. . ....|+ +.+....+
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~~~~~~~igy-v~Q~~~l~ 118 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAELREVRRKKIAM-VFQSFALM 118 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHHHHHHHhCCEEE-EECCCcCC
Confidence 5799999999999999999999999999999999998 99999 455421 1 124565 44332222
Q ss_pred CCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCC
Q 025293 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (255)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD 240 (255)
..+++.+++.+.....+.........+.++++.+++. .+.++..|||||+||+++|++|+.+|++|||||||++||
T Consensus 119 --~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD 196 (400)
T PRK10070 119 --PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD 196 (400)
T ss_pred --CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 1257777776554443432222234567788888875 467788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHh
Q 025293 241 GGVWKDVSSMFDE 253 (255)
Q Consensus 241 ~~~~~~l~~ll~~ 253 (255)
+.++..+.++|.+
T Consensus 197 ~~~r~~l~~~L~~ 209 (400)
T PRK10070 197 PLIRTEMQDELVK 209 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999865
No 73
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.6e-32 Score=230.12 Aligned_cols=166 Identities=18% Similarity=0.153 Sum_probs=124.0
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CC
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP 149 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~ 149 (255)
|+++|+++.|++ +. +++|+||+|++| +++|+||||||||||+++|+|+++ |++|+ .+++... ..
T Consensus 1 i~~~~~~~~~~~--~~--~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGK--KR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred CEEEEEEEEECC--EE--EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence 478999999976 33 559999999999 999999999999999999999998 99999 4444321 12
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~ 227 (255)
..++ +.++...+ ..+++.++..+.....+.........+..+++.+++. .+.++..||+||+||+++|++++.+|
T Consensus 73 ~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 149 (211)
T cd03264 73 RIGY-LPQEFGVY--PNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDP 149 (211)
T ss_pred heEE-ecCCCccc--ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 2343 33332211 1245556555433332322111233456778877775 35678899999999999999999999
Q ss_pred cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 228 KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 228 ~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|+||||++||+.+++.+.+++.+.
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~~ 176 (211)
T cd03264 150 SILIVDEPTAGLDPEERIRFRNLLSEL 176 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999763
No 74
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.98 E-value=1.7e-32 Score=230.27 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=123.2
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (255)
|+++||++.|++ +. +++++||+|++|+++||+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 l~~~~l~~~~~~--~~--~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03262 1 IEIKNLHKSFGD--FH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE 73 (213)
T ss_pred CEEEEEEEEECC--eE--eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence 468999999986 34 5599999999999999999999999999999999998 99998 4444321
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
....++ +..+...+ ..+++.++..+... ..+.........+.++++.+++. .+..+..||+||+||+++|+++
T Consensus 74 ~~~~i~~-~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 74 LRQKVGM-VFQQFNLF--PHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred HHhcceE-EecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 112344 33322111 12455555544321 11221111223456777777775 3677889999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|++||+||||++||+.+++.+.+++.+.
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 181 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDL 181 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998753
No 75
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.98 E-value=2.4e-32 Score=228.65 Aligned_cols=162 Identities=19% Similarity=0.232 Sum_probs=123.4
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------CC
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------PD 150 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------~~ 150 (255)
|+++||++.|++ ++ +++|+||++++|++++|+||||||||||+++|+|+++ |++|+ .+++.... ..
T Consensus 1 l~~~~l~~~~~~--~~--~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGK--KR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR 73 (208)
T ss_pred CEEEEEEEEECC--eE--eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence 478999999976 34 5599999999999999999999999999999999998 99998 45443211 12
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
.++ +..+.. +. ...++.+++.......+. ....+..+++.+++. .+.++..||+||+||+++|++++.+|+
T Consensus 74 i~~-~~q~~~-~~-~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 74 IGA-LIEAPG-FY-PNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred EEE-ecCCCc-cC-ccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 443 333221 11 124555555443322221 234566777888775 356788999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|+||||++||+.+++.+.+++.+
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~ 171 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILS 171 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998875
No 76
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=2.1e-32 Score=239.93 Aligned_cols=172 Identities=16% Similarity=0.120 Sum_probs=127.6
Q ss_pred eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
+|+++||++.|++... ...+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 6899999999974210 0125699999999999999999999999999999999998 99999 4544321
Q ss_pred -----CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchh
Q 025293 148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 148 -----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~ 218 (255)
...+|+ +..+.. .+. ..++.+++.+.....+.........+.++++.+++. .+.++..||+||+||++
T Consensus 79 ~~~~~~~~ig~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 79 NLKKLRKKVSL-VFQFPEAQLF--ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred hHHHHHhceEE-EEeChhhhhc--cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHH
Confidence 113455 333321 122 146666655433322222112223457788888875 36778999999999999
Q ss_pred hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l 191 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY 191 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998753
No 77
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.8e-32 Score=240.66 Aligned_cols=171 Identities=14% Similarity=0.078 Sum_probs=128.9
Q ss_pred eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
.|+++||++.|++... ...+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999974210 0125699999999999999999999999999999999998 99999 4554321
Q ss_pred -----CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchh
Q 025293 148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 148 -----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~ 218 (255)
...+|+ +.++.. .+.. .++.+++.+.....+.........+.++++.+++. .+.++..||+||+||++
T Consensus 79 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 79 KLKPLRKKVGI-VFQFPEHQLFE--ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred hHHHHHhhEEE-EeeCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHH
Confidence 123555 444321 1221 36666665544443332222223457788888885 36778999999999999
Q ss_pred hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||++|+.+|++||+||||++||+..+..+.+++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~ 190 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYK 190 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865
No 78
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.3e-32 Score=227.57 Aligned_cols=171 Identities=16% Similarity=0.215 Sum_probs=129.4
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (255)
+|++++||+..||..+ +|++|||++++||+++|+|+||+|||||||+|+|+.+ +.+|+ .+++....
T Consensus 2 ~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 2 PMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHE 74 (237)
T ss_pred CceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHHH
Confidence 5899999999999844 7799999999999999999999999999999999998 88999 55554321
Q ss_pred -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCC--CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhcc
Q 025293 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
...|..+.-.+..++ +.+++.+|+........- ......+.+.+++-++....+.....|||||+|-++|||||+.
T Consensus 75 r~r~Gi~~VPegR~iF-~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 75 RARLGIAYVPEGRRIF-PRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred HHhCCeEeCcccccch-hhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 123322222333333 237888877654332211 1111134455555555555778889999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++|+||||+.||-|...+++.+.|.+.
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l 182 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKEL 182 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 79
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.97 E-value=1.7e-32 Score=234.73 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=122.3
Q ss_pred eEEecCchheeh-hhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~-~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
||+++||++.|+ + +. +++|+||+|.+|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~l~~~~l~~~~~~~--~~--il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 1 MLEVENLSKVYPNG--KQ--ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK 73 (243)
T ss_pred CeEEEeeeeecCCC--cc--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence 478999999997 4 33 5599999999999999999999999999999999998 99999 4444221
Q ss_pred ----CCCeEEEEecCCCCCCCccCCcccChHHHHHh--------cCCCCCccHHHHHHHHHhhcccC--CccCCCCCccc
Q 025293 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGV 213 (255)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~ 213 (255)
....++ +......+. .+++.+++.+.... .+.........+.++++.+++.. +.++..||+||
T Consensus 74 ~~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (243)
T TIGR02315 74 LRKLRRRIGM-IFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQ 150 (243)
T ss_pred HHHHHhheEE-EcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 112444 333322111 13444444321100 01111112234567788877753 56788999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++|+.+|++||+||||++||+.++..+.++|.+
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 190 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999865
No 80
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.8e-32 Score=238.44 Aligned_cols=168 Identities=19% Similarity=0.177 Sum_probs=122.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (255)
||+++||++.|++ +. +++|+||+|.+|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ml~~~~l~~~~~~--~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRYQD--EP--VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEcCC--cc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence 5889999999986 33 5599999999999999999999999999999999998 99999 45443211
Q ss_pred ---CCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ---~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
..+++ +.++.. .... .++.++..+.....+.........+..+++.+++. .+.++..|||||+||+++|++
T Consensus 74 ~~~~~i~~-v~q~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~lara 150 (271)
T PRK13638 74 ALRQQVAT-VFQDPEQQIFY--TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGA 150 (271)
T ss_pred HHHhheEE-EeeChhhcccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHH
Confidence 12444 333321 1111 13333433322222221111123345677777764 356788999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 151 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 182 (271)
T PRK13638 151 LVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI 182 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998753
No 81
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.1e-32 Score=239.99 Aligned_cols=172 Identities=15% Similarity=0.121 Sum_probs=129.3
Q ss_pred eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
||+++||++.|+.... ...+|+|+||+|.+||+++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 5899999999974211 0125699999999999999999999999999999999998 99999 5554321
Q ss_pred -----CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchh
Q 025293 148 -----PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 148 -----~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~ 218 (255)
...+|+ +.++. ..+.. .++.+++.+.....+.+.......+.++++.+++. .+..+..||+||+||++
T Consensus 78 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 78 EIKPVRKKVGV-VFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred cHHHHHhhEEE-EecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHH
Confidence 113455 44432 12221 36666666554444433222233456778888874 36778899999999999
Q ss_pred hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++|+.+|++|||||||++||+.++..+.+++.+.
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l 190 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI 190 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998653
No 82
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2.9e-32 Score=228.22 Aligned_cols=163 Identities=17% Similarity=0.125 Sum_probs=122.8
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----CC
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----PD 150 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-----~~ 150 (255)
+|+++||++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+ .+++.... ..
T Consensus 2 ~l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 2 MLEGEDLACVRGG--RV--LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEEeEEEEECC--eE--EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence 6899999999986 33 5699999999999999999999999999999999998 99998 45443211 12
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCCc
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
.++ +..... + ....++.++..+.....+ .....+.++++.+++.. +.++..||+||+||+++|++++.+|+
T Consensus 75 ~~~-~~~~~~-~-~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 75 CHY-LGHRNA-M-KPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred cEE-ecCCCc-C-CCCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 333 221111 1 112355554443322211 12234667888887753 56778999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|+||||++||+.++..+.++|.+
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~ 172 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRA 172 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 83
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.6e-32 Score=233.39 Aligned_cols=169 Identities=18% Similarity=0.247 Sum_probs=124.0
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+++++||++.|++ +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~~~l~~~~l~~~~~~--~~--~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 1 MATLTAKNLAKAYKG--RR--VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred CceEEEeCcEEEeCC--EE--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 457999999999986 34 5599999999999999999999999999999999998 99998 4444211
Q ss_pred ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC-CCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhh
Q 025293 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~ 221 (255)
...+++ +..... +. ..+++.++......... .........+.++++.+++.. +.++..||+||+||+++|+
T Consensus 74 ~~~~~~i~~-~~q~~~-~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (241)
T PRK10895 74 ARARRGIGY-LPQEAS-IF-RRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIAR 150 (241)
T ss_pred HHHHhCeEE-eccCCc-cc-ccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHH
Confidence 112343 333321 11 11355555443221111 111112234567777777653 5677899999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+|++||+||||++||+.++..+.+++.+
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (241)
T PRK10895 151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182 (241)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988865
No 84
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.5e-32 Score=237.40 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=127.0
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P---- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~---- 148 (255)
|.+++++||++.|++. +. +++|+||+|++||++||+|+||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 ~~~l~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 1 MHLIETRDLCYSYSGS-KE--ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIR 74 (277)
T ss_pred CceEEEEEEEEEeCCC-Cc--eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 4689999999999642 23 5699999999999999999999999999999999998 99999 4544321 1
Q ss_pred ---CCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ---~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
..+|+ +..+.. .+. ..++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|++
T Consensus 75 ~~~~~i~~-v~q~~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 75 EVRKFVGL-VFQNPDDQIF--SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred HHHhheEE-EecCcccccc--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 12454 333321 111 135555554433322222111223456778877775 467788999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|++||+||||++||+.++..+.+++.+
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~ 182 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLND 182 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
No 85
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.2e-32 Score=238.27 Aligned_cols=170 Identities=17% Similarity=0.160 Sum_probs=127.4
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
++|+++||++.|++. +. +++|+||+|++||++||+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 3 ~~l~~~~l~~~~~~~-~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 3 NIIEVEDLHFRYKDG-TK--ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW 76 (274)
T ss_pred ceEEEEEEEEEeCCC-Ce--eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 379999999999631 23 5699999999999999999999999999999999998 99999 4444321
Q ss_pred -CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 -~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
...+|+ +.++.. .+. ..++.+++.+.....+.........+..+++.+++. .+.++..|||||+||+++|++|
T Consensus 77 ~~~~i~~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 77 VRSKVGL-VFQDPDDQVF--SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred HHhhEEE-EecChhhhhc--cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 123455 444321 111 136666655433322222111223456777877775 4677889999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|++||+||||++||+.++..+.+++.+.
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 184 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRL 184 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998753
No 86
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.97 E-value=2.5e-32 Score=232.73 Aligned_cols=166 Identities=19% Similarity=0.178 Sum_probs=123.3
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-------
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P------- 148 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~------- 148 (255)
|+++||++.|++ +. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 l~~~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGG--LV--ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECC--EE--EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence 468999999976 33 5599999999999999999999999999999999998 99998 4444221 1
Q ss_pred -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC----------CCccHHHHHHHHHhhcccC--CccCCCCCccccc
Q 025293 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD 215 (255)
Q Consensus 149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kq 215 (255)
...++ +.+... ++ ..+++.+++.+........ .......+.++++.+++.. +.++..||+||+|
T Consensus 74 ~~~i~~-v~q~~~-l~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 74 RLGIGR-TFQIPR-LF-PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR 150 (236)
T ss_pred hcCEEE-Eecccc-cc-cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence 12444 333322 11 1246666554433222111 0111234567788887753 5677899999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|++|+.+|+++|+||||++||+.++..+.+++.+
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 188 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE 188 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 87
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.97 E-value=3e-32 Score=230.99 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=124.0
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh-----cccCCCCCc-cCCCCCC----
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKAS-SFDSQVK---- 147 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll-----~~~~p~~G~-~~~~~~~---- 147 (255)
|+++||++.|++ +. +++|+||+|.+||+++|+||||||||||+++|+|++ + |++|+ .+++...
T Consensus 1 i~~~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~ 73 (227)
T cd03260 1 IELRDLNVYYGD--KH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD 73 (227)
T ss_pred CEEEEEEEEcCC--ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence 478999999986 33 559999999999999999999999999999999999 8 99999 4544321
Q ss_pred ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhcccC--Ccc--CCCCCcccccc
Q 025293 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQG--SVY--APSFDHGVGDP 216 (255)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~--~~~--~~~lS~G~kqr 216 (255)
...+++ +.++.. +. .+++.+++.+.....+.... .....+.++++.+++.. +.. +..||+||+||
T Consensus 74 ~~~~~~~~~i~~-~~q~~~-~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 149 (227)
T cd03260 74 VDVLELRRRVGM-VFQKPN-PF--PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQR 149 (227)
T ss_pred hHHHHHHhhEEE-EecCch-hc--cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHH
Confidence 112444 333322 22 24666665543332222111 12234567788887753 333 48999999999
Q ss_pred hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 187 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAEL 187 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998763
No 88
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.2e-32 Score=229.38 Aligned_cols=171 Identities=20% Similarity=0.252 Sum_probs=132.6
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC---C--
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---P-- 149 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~---~-- 149 (255)
+++++++|+|+||+.. +++||||++++||++|||||||||||||+|+|+|+++ |++|+ ++.+.... +
T Consensus 3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence 5789999999999954 7899999999999999999999999999999999999 99999 56554321 1
Q ss_pred --CeEEEEecCCCCCCCccCCcccChHHHHHhc-------CCC-----CCccHHHHHHHHHhhccc--CCccCCCCCccc
Q 025293 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP-----WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV 213 (255)
Q Consensus 150 --~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~ 213 (255)
..|..-.++.-.+ ...+++.+|+....... +.+ .....+..+++++.+++. .+.....||+|+
T Consensus 76 iar~Gi~RTFQ~~rl-F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 76 IARLGIARTFQITRL-FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ 154 (250)
T ss_pred HHhccceeecccccc-cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence 2332222222222 23478888876643311 111 112234567889999887 456778999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+.||+||+.+|++|+||||.+|+.+....++.++|.+.
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i 195 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764
No 89
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.9e-32 Score=232.14 Aligned_cols=167 Identities=19% Similarity=0.185 Sum_probs=121.7
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-------
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P------- 148 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~------- 148 (255)
|+++||++.|++. +. +++|+||+|.+|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 l~~~~l~~~~~~~-~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (241)
T cd03256 1 IEVENLSKTYPNG-KK--ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKALR 74 (241)
T ss_pred CEEeeEEEecCCc-cE--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHHH
Confidence 4689999999751 22 5699999999999999999999999999999999998 99998 4544321 1
Q ss_pred ---CCeEEEEecCCCCCCCccCCcccChHHHHHh--------cCCCCCccHHHHHHHHHhhccc--CCccCCCCCccccc
Q 025293 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kq 215 (255)
...++ +.++...+ ..+++.+++...... .+.........+.++++.+++. .+.++..||+||+|
T Consensus 75 ~~~~~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 75 QLRRQIGM-IFQQFNLI--ERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHHhccEE-EcccCccc--ccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 12343 33332211 124555544332110 1111112233456778887775 35678899999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus 152 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (241)
T cd03256 152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR 189 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 90
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.97 E-value=2.3e-32 Score=241.27 Aligned_cols=160 Identities=15% Similarity=0.150 Sum_probs=121.2
Q ss_pred heehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CCCeEEEEe
Q 025293 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PPDVATVLP 156 (255)
Q Consensus 85 k~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~~~g~~i~ 156 (255)
|.|++ +. +|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++... ...+|+ +.
T Consensus 1 k~y~~--~~--~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~ 72 (302)
T TIGR01188 1 KVYGD--FK--AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGI-VP 72 (302)
T ss_pred CeeCC--ee--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEE-ec
Confidence 46765 33 5699999999999999999999999999999999998 99999 4444221 123555 33
Q ss_pred cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe 234 (255)
+... ++ ..+++.+++.+.....+.........+.++++.+++. .+.++..||+||+||+++|++|+.+|++|||||
T Consensus 73 q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 150 (302)
T TIGR01188 73 QYAS-VD-EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE 150 (302)
T ss_pred CCCC-CC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3322 11 2256667666544444432222233467788888875 467788999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHhh
Q 025293 235 NYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 235 p~~~LD~~~~~~l~~ll~~~ 254 (255)
||++||+.++..+++++.+.
T Consensus 151 Pt~gLD~~~~~~l~~~l~~~ 170 (302)
T TIGR01188 151 PTTGLDPRTRRAIWDYIRAL 170 (302)
T ss_pred CCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 91
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.1e-32 Score=241.72 Aligned_cols=179 Identities=12% Similarity=0.121 Sum_probs=126.9
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc-CCCCCc-cCCCC-CC----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQ-VK---- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~-~p~~G~-~~~~~-~~---- 147 (255)
|++|+++||++.|........+++|+||+|.+||++||+|+||||||||+++|+|+++.. .|++|+ .+++. +.
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 468999999999953111122669999999999999999999999999999999998410 137888 45442 11
Q ss_pred -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-----C-CccHHHHHHHHHhhcccC-----CccCCCC
Q 025293 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-----W-TFNPLLLLNCLKNLRNQG-----SVYAPSF 209 (255)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~l~~l~~~~-----~~~~~~l 209 (255)
...+++ +.++........+++.+++.......... . ......+.++++.+++.. +.++..|
T Consensus 81 ~~~~~~~~~~i~~-v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~L 159 (330)
T PRK15093 81 RERRKLVGHNVSM-IFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYEL 159 (330)
T ss_pred HHHHHHhCCCEEE-EecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence 113555 45443321222234444443221111000 0 112245678899998863 5778899
Q ss_pred CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||||+|||+||++|+.+|++||+||||++||+..+.++.++|.+.
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 204 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRL 204 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999763
No 92
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.97 E-value=4.9e-32 Score=232.57 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=124.5
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CCc-cCCCCCCC--
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVKP-- 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~-----~G~-~~~~~~~~-- 148 (255)
+|+++||++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+++ |+ +|+ .+++....
T Consensus 1 ~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYGE--KE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEECC--ee--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence 4789999999986 33 5599999999999999999999999999999999997 88 898 44443211
Q ss_pred --------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc------CCccCCCCCccc
Q 025293 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (255)
Q Consensus 149 --------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~ 213 (255)
..+++ +.++.. .. . .++.++..+.....+. ...........+++.+++. .+.++..||+||
T Consensus 74 ~~~~~~~~~~i~~-v~q~~~-~~-~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 149 (247)
T TIGR00972 74 KIDVVELRRRVGM-VFQKPN-PF-P-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQ 149 (247)
T ss_pred ccchHHHHhheEE-EecCcc-cC-C-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHH
Confidence 12444 333321 11 1 3555555443322221 1111223456778888775 356788999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+++|++|+.+|+++|+||||++||+.++..+.++|.+.
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 190 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL 190 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 93
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.9e-32 Score=237.29 Aligned_cols=171 Identities=13% Similarity=0.141 Sum_probs=128.5
Q ss_pred CeEEecCchheehhhh-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293 76 PVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~-~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (255)
.+|+++||++.|++.. +. +|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+ .+++....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKY--TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVW 77 (279)
T ss_pred ceEEEEeEEEEcCCCCcCe--eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHH
Confidence 3799999999997421 22 5699999999999999999999999999999999998 99999 45543211
Q ss_pred ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
..+|+ +.++...... ..++.+++.+.....++........+.++++.+++. .+..+..||+||+||+++|++|
T Consensus 78 ~~~~~i~~-v~q~~~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral 155 (279)
T PRK13650 78 DIRHKIGM-VFQNPDNQFV-GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV 155 (279)
T ss_pred HHHhhceE-EEcChHHhcc-cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 13454 4443211111 135666665443333332222234467788888876 3677889999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|++||+||||++||+.++..+.+++.+
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 185 (279)
T PRK13650 156 AMRPKIIILDEATSMLDPEGRLELIKTIKG 185 (279)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998865
No 94
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.97 E-value=7e-32 Score=240.62 Aligned_cols=177 Identities=15% Similarity=0.181 Sum_probs=128.3
Q ss_pred CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCc-cCCCCCC-C
Q 025293 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-P 148 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~---~G~-~~~~~~~-~ 148 (255)
.+++|+++||++.|+.....+.+++|+||+|++||++||+|+||||||||+++|+|+++ |+ +|+ .+++... .
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN 85 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence 45689999999999632112336699999999999999999999999999999999997 75 888 4554321 1
Q ss_pred -----------CCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhcccC-----CccCCCCCc
Q 025293 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH 211 (255)
Q Consensus 149 -----------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~lS~ 211 (255)
..+++ +.++.+....+.+++.+++.+..... +.........+.++++.+++.. +.++..|||
T Consensus 86 ~~~~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSg 164 (330)
T PRK09473 86 LPEKELNKLRAEQISM-IFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSG 164 (330)
T ss_pred CCHHHHHHHhcCCEEE-EEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCH
Confidence 23555 55553222222244444333322222 1111112234567788887752 457889999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||++||++|+.+|++||+||||++||..++..+.++|.+.
T Consensus 165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (330)
T PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 207 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988753
No 95
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.6e-32 Score=236.86 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=127.4
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
++|+++||++.|++..+. +++|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 4 ~~l~~~~l~~~~~~~~~~--~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 4 EIIRVEHISFRYPDAATY--ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD 78 (279)
T ss_pred ceEEEEEEEEEeCCCCcc--ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 479999999999742223 5699999999999999999999999999999999998 99999 4555321
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
...+|+ +.++..... ...++.+++.+.....+.........+..+++.+++. .+..+..||+||+||+++|++|+
T Consensus 79 ~~~~i~~-~~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 79 VRRQVGM-VFQNPDNQF-VGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred HhhheEE-EEeCHHHhc-ccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 113454 333321111 1135656555433333322211223456777777775 45678899999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||+||||++||+.++..+.++|.+
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 96
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=5e-32 Score=231.54 Aligned_cols=167 Identities=16% Similarity=0.199 Sum_probs=124.1
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (255)
||+++|+++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ~l~~~~l~~~~~~--~~--il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 1 MIEFKNVSKHFGP--TQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred CEEEEeEEEEECC--eE--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence 4789999999986 34 5599999999999999999999999999999999998 99998 45442211
Q ss_pred ---CCeEEEEecCCCCCCCccCCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
...++ +..+...+ ..+++.++..+... ..+.........+.++++.+++. .+.++..||+||+||+++|++
T Consensus 74 ~~~~~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 150 (240)
T PRK09493 74 LIRQEAGM-VFQQFYLF--PHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA 150 (240)
T ss_pred HHhhceEE-EecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence 12444 33332211 12455555543221 11221111223456778888775 356778999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|+++|+||||++||+.++..+.+++.+
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 181 (240)
T PRK09493 151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181 (240)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
No 97
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.5e-32 Score=237.00 Aligned_cols=168 Identities=15% Similarity=0.097 Sum_probs=124.6
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
||+++||++.|++. ++ +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ml~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 1 MIRLENVSYSYPDG-TP--ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred CEEEEEEEEEcCCC-Cc--eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHHH
Confidence 47899999999531 23 5599999999999999999999999999999999998 99998 4444221
Q ss_pred -CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 -~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
...+|+ +..+.. .+. ..++.+++.+.....+.........+..+++.+++. .+.++..||+||+||+++|++|
T Consensus 75 ~~~~i~~-v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 151 (274)
T PRK13644 75 IRKLVGI-VFQNPETQFV--GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGIL 151 (274)
T ss_pred HHhheEE-EEEChhhhcc--cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 112444 333321 111 135555554433332222111223456677777775 3577889999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|++||+||||++||+.++..+.+++.+
T Consensus 152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 181 (274)
T PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKK 181 (274)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999865
No 98
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.97 E-value=4.5e-32 Score=229.00 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=120.1
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC--------
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK-------- 147 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~-------- 147 (255)
|+++||++.|++ +. +++|+||+|.+|+++||+||||||||||+++|+|+++ |++|+ .+++. ..
T Consensus 1 l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGK--SQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCC--ee--EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence 478999999986 33 5599999999999999999999999999999999998 99998 44442 11
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhh-ccc--CCccCCCCCcccccchhhhhhhc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
...+++ +..+.. +. ..+++.++..+.....+ ..........+++.+ ++. .+.++..||+||+||+++|++++
T Consensus 74 ~~~i~~-~~q~~~-~~-~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 74 RAGIGY-VPEGRR-IF-PELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred hcCeEE-eccccc-cC-CCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 112444 333221 11 12455555544322221 111122334555555 232 46778899999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|++||+||||++||+.++..+.+++.+.
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998753
No 99
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=3.4e-32 Score=234.88 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=124.0
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCC
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD 150 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~ 150 (255)
.++|+++||++.|++ +. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+ .+++... ...
T Consensus 10 ~~~l~i~~l~~~~~~--~~--il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 82 (257)
T PRK11247 10 GTPLLLNAVSKRYGE--RT--VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEARED 82 (257)
T ss_pred CCcEEEEEEEEEECC--cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCc
Confidence 367999999999986 33 5599999999999999999999999999999999998 99998 4444221 223
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCCc
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
.++ +.+....+ ...++.+++.+. ... .....+.++++.+++.. +.++..|||||+||+++|++|+.+|+
T Consensus 83 i~~-v~q~~~l~--~~~tv~enl~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 83 TRL-MFQDARLL--PWKKVIDNVGLG-----LKG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred eEE-EecCccCC--CCCcHHHHHHhc-----ccc-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 454 33332211 113444443321 111 11234567788888753 56788999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||+||||++||+.++..+.++|.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~ 178 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIES 178 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 100
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.97 E-value=6.7e-32 Score=234.42 Aligned_cols=174 Identities=16% Similarity=0.156 Sum_probs=123.1
Q ss_pred CeEEecCchheehhhh-----cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CCC
Q 025293 76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VKP 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~-----~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~~ 148 (255)
++|+++||+++|+... ....+++|+||+|++|++++|+|||||||||||++|+|+++ |++|+ .+++. +..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence 4799999999996310 01125699999999999999999999999999999999998 99998 44442 111
Q ss_pred -------CCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccch
Q 025293 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 149 -------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv 217 (255)
..+++ +..+........+++.++..+.... ...........+.++++.+++. .+.++..||+||+||+
T Consensus 80 ~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 158 (267)
T PRK15112 80 GDYSYRSQRIRM-IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL 158 (267)
T ss_pred CchhhHhccEEE-EecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHH
Confidence 12444 3333211111112333333222211 1121111223456788888873 3556789999999999
Q ss_pred hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|++|+.+|++|||||||++||+.+++.+.++|.+
T Consensus 159 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 194 (267)
T PRK15112 159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLE 194 (267)
T ss_pred HHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998875
No 101
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.8e-32 Score=236.67 Aligned_cols=170 Identities=17% Similarity=0.155 Sum_probs=128.1
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
++|+++||++.|++. +. +++|+||+|++||++||+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 4 ~~l~~~~l~~~~~~~-~~--~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 4 YILKVEELNYNYSDG-TH--ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGL 77 (283)
T ss_pred ceEEEEeEEEEeCCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcchH
Confidence 479999999999631 23 5599999999999999999999999999999999998 99999 4444321
Q ss_pred ---CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293 148 ---PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ---~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~ 221 (255)
...+|+ +..+. .... ..++.+++.+.....+++.......+..+++.+++. .+.++..||+||+||+++|+
T Consensus 78 ~~~~~~ig~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lar 154 (283)
T PRK13636 78 MKLRESVGM-VFQDPDNQLF--SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG 154 (283)
T ss_pred HHHHhhEEE-EecCcchhhc--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 123455 44432 1111 135656555433333332222223456777888875 46778899999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|+.+|++||+||||++||+.++..+.+++.+.
T Consensus 155 aL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l 187 (283)
T PRK13636 155 VLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEM 187 (283)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988653
No 102
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.3e-32 Score=231.19 Aligned_cols=167 Identities=17% Similarity=0.175 Sum_probs=123.8
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
+|+++|+++.|++ +. +++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (242)
T PRK11124 2 SIQLNGINCFYGA--HQ--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred EEEEEeeEEEECC--ee--eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence 6899999999986 34 5599999999999999999999999999999999998 99998 4544321
Q ss_pred ------CCCeEEEEecCCCCCCCccCCcccChHHH-HHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchh
Q 025293 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~ 218 (255)
...+++ +..+.. ++ ..+++.+++... ....+.........+.++++.+++. .+..+..||+||+||++
T Consensus 75 ~~~~~~~~~i~~-~~q~~~-~~-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 75 KAIRELRRNVGM-VFQQYN-LW-PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred hhHHHHHhheEE-EecCcc-cc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 112344 333222 11 124555554321 1122222111223456777777775 35677899999999999
Q ss_pred hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|++++.+|+++|+||||++||+.++..+.+++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~ 186 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
No 103
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.2e-32 Score=231.25 Aligned_cols=170 Identities=18% Similarity=0.095 Sum_probs=125.9
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (255)
|++|+++||++.|++ +. +++|+||+|++|++++|+||||||||||+++|+|+++ | ++|+ .+++...
T Consensus 1 ~~~l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 1 MNKIEIRDLKVSFGQ--VE--VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE---LYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred CceEEEEeeEEEECC--ee--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCCCCceEEEECCEECC
Confidence 467999999999986 33 5599999999999999999999999999999999985 4 5898 4444211
Q ss_pred -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC--CccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~------~~~~~~~lS~G 212 (255)
...+|+ +.++...+ ..+++.++..+......... ......+.++++.+++. .+..+..||+|
T Consensus 74 ~~~~~~~~~~i~~-v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 150 (250)
T PRK14247 74 KMDVIELRRRVQM-VFQIPNPI--PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGG 150 (250)
T ss_pred cCCHHHHhccEEE-EeccCccC--CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHH
Confidence 123454 34332211 12466666654332222111 11123456778877763 35678899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++++.+|+++|+||||++||+.++..+.++|.+.
T Consensus 151 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14247 151 QQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL 192 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998763
No 104
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.97 E-value=1.1e-31 Score=231.84 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=123.3
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC------CC
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------KP 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~------~~ 148 (255)
++|+++||++.|++ +. +++|+||+|++|++++|+|+||||||||+++|+|+++ |++|+ .+++.. ..
T Consensus 5 ~~l~~~~l~~~~~~--~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 5 PLLSVRGLTKLYGP--RK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred ceEEEeeeEEEcCC--ce--eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence 47999999999976 33 5599999999999999999999999999999999998 99999 444432 11
Q ss_pred -----------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc---CCccCCCCCccc
Q 025293 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (255)
Q Consensus 149 -----------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~ 213 (255)
...++ +..+........++..+++.+.....+.. .......+.++++.+++. .+..+..||+||
T Consensus 78 ~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 78 LSEAERRRLLRTEWGF-VHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGM 156 (258)
T ss_pred CCHHHHHHHhhcceEE-EeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHH
Confidence 12444 33332111111123333332211111111 011123456778888874 257788999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++|+.+|++||+||||++||+.++..+.+++.+
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 196 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRG 196 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
No 105
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=7.5e-32 Score=232.99 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=123.1
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
+|+++||++.|++ +. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~~~~--~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGG--RT--LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCC--ee--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence 6899999999986 33 5599999999999999999999999999999999998 99999 4444211
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc-
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG- 224 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~- 224 (255)
....++ +..+..... .+++.+++.+.....+.........+..+++.+++. .+..+..||+||+||+++|++|+
T Consensus 75 ~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 75 ARRRAV-LPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred hhheEE-EccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 112344 333322111 135544443322111111111223456778877775 36778899999999999999999
Q ss_pred -----cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 225 -----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 -----~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||+||||++||+.++..+.++|.+
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ 185 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 59999999999999999999999998875
No 106
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.97 E-value=1.1e-31 Score=232.86 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=125.9
Q ss_pred eEEecCchheehhh-------hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-
Q 025293 77 VVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~-------~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~- 147 (255)
+|+++||++.|++. .+. +++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAP--VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLY 76 (265)
T ss_pred eEEEEeEEEEeccCccccccCceE--EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcc
Confidence 68999999999631 123 5699999999999999999999999999999999998 99999 4554221
Q ss_pred ----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccc---CCccCCCCCccc
Q 025293 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (255)
Q Consensus 148 ----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~ 213 (255)
...+++ +.++........+++.+++.+..... .+........+.++++.+++. .+.++..||+||
T Consensus 77 ~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQL-VFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred ccCHHHHHHHhhceEE-EecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHH
Confidence 112454 44432111111245555544332221 222222234567788888874 357788999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++|+.+|++||+||||++||+..+..+.++|.+
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~ 195 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK 195 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 107
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-31 Score=238.43 Aligned_cols=176 Identities=14% Similarity=0.095 Sum_probs=128.4
Q ss_pred ccCCCeEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--
Q 025293 72 RREIPVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-- 147 (255)
Q Consensus 72 ~~~~~~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-- 147 (255)
..+.++|+++||++.|++... ...+|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 16 ~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGD 92 (320)
T ss_pred CCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEccc
Confidence 344578999999999974210 1125699999999999999999999999999999999998 99999 4443110
Q ss_pred ----------------------CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---
Q 025293 148 ----------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--- 201 (255)
Q Consensus 148 ----------------------~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--- 201 (255)
...+|. +.++. ..+.. .++.+++.+.....+.........+.++++.+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~-v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 169 (320)
T PRK13631 93 KKNNHELITNPYSKKIKNFKELRRRVSM-VFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSY 169 (320)
T ss_pred ccccccccccccccccchHHHHHhcEEE-EEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhH
Confidence 112455 34332 12221 25555554433222222111223456778888874
Q ss_pred CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 202 ~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.+..+..|||||+||++||++|+.+|++||+||||++||+.++..+.++|.+
T Consensus 170 ~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~ 221 (320)
T PRK13631 170 LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD 221 (320)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999865
No 108
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.97 E-value=1.9e-31 Score=225.97 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=124.7
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-C------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-K------ 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-~------ 147 (255)
++|+++||++.|++ +. +++|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++.. .
T Consensus 6 ~~i~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 6 PLLQLQNVGYLAGD--AK--ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred ceEEEeccEEeeCC--ce--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence 47999999999986 33 5599999999999999999999999999999999998 99999 444421 1
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhh
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l 223 (255)
....++ +..+.. ++. .++.++..+.....+ .......+.++++.+++. .+.++..||+||+||+++|++|
T Consensus 79 ~~~~i~~-~~q~~~-l~~--~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 79 YRQQVSY-CAQTPT-LFG--DTVYDNLIFPWQIRN--QQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred HHhccEE-Eecccc-ccc--ccHHHHHHhHHhhcC--CChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 112344 333322 221 255555443222111 111223456788888874 3677889999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|+++|+||||++||+.++..+.+++.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998875
No 109
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.97 E-value=1.3e-31 Score=226.69 Aligned_cols=171 Identities=19% Similarity=0.203 Sum_probs=123.7
Q ss_pred eEEecCchheehhh---hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCC--C---CCC
Q 025293 77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD--S---QVK 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~---~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~--~---~~~ 147 (255)
||+++||++.|+.. .+...+++|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+ .++ + +..
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence 47899999999631 011225699999999999999999999999999999999998 99999 443 2 111
Q ss_pred -----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC---CccCCCCCccc
Q 025293 148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGV 213 (255)
Q Consensus 148 -----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~ 213 (255)
....++ +.++.. +. ..+++.+++.+.....+...........++++.+++.. +.++..||+||
T Consensus 78 ~~~~~~~~~~~~~~i~~-~~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 78 QASPREVLEVRRKTIGY-VSQFLR-VI-PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGE 154 (224)
T ss_pred hcCHHHHHHHHhcceEE-Eecccc-cC-CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHH
Confidence 012344 333322 11 12345444443222223221122334567788887753 46788999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++|+.+|+++|+||||++||+.++..+.+++.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 110
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=1.4e-31 Score=229.03 Aligned_cols=167 Identities=15% Similarity=0.190 Sum_probs=123.8
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (255)
+|+++|+++.|++ +. +++|+||+|++|++++|+|+||||||||+++|+|+++ |++|+ .+++....
T Consensus 2 ~i~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FK--ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQI 74 (242)
T ss_pred eEEEEeeEEEcCC--eE--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHHH
Confidence 6899999999976 33 5599999999999999999999999999999999998 99999 44443211
Q ss_pred --CCeEEEEecCCCCCCCccCCcccChHHHHHhc-C-------CCCCccHHHHHHHHHhhcccC--CccCCCCCcccccc
Q 025293 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-------APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP 216 (255)
Q Consensus 149 --~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqr 216 (255)
...++ +..+.. ++ ..+++.++..+..... . .........+.++++.+++.. +..+..||+||+||
T Consensus 75 ~~~~i~~-~~q~~~-~~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qr 151 (242)
T TIGR03411 75 ARAGIGR-KFQKPT-VF-ENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW 151 (242)
T ss_pred HhcCeeE-eccccc-cC-CCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 12343 332221 11 1245555544322110 0 000112234567788877753 56788999999999
Q ss_pred hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++|++++.+|++||+||||++||+.++..+.+++.+
T Consensus 152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 188 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS 188 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875
No 111
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=1.1e-31 Score=223.05 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=121.8
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CC
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP 149 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~ 149 (255)
|+++|+++.|++ +. +++|+||+|.+|++++|+||||||||||+++|+|+++ |++|+ .+++... ..
T Consensus 1 l~~~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGE--RM--LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR 73 (198)
T ss_pred CEEEEEEEEECC--EE--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence 478999999987 34 5599999999999999999999999999999999998 99998 4444321 11
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~ 227 (255)
..++ +.... ... ...++.++..+.....+ .....+.++++.+++. .+.++..||+||+||+++|++++.+|
T Consensus 74 ~i~~-~~q~~-~~~-~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 74 NILY-LGHLP-GLK-PELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred heEE-eccCc-ccc-cCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 2333 32221 111 12455555544332221 1123456777777775 35778899999999999999999999
Q ss_pred cEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++|+||||++||+.++..+.+++.+
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~ 172 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRA 172 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 112
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.7e-32 Score=236.24 Aligned_cols=171 Identities=11% Similarity=0.065 Sum_probs=126.5
Q ss_pred eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
.|+++||++.|++... ...+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999964210 0125699999999999999999999999999999999998 99999 4554221
Q ss_pred -----CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchh
Q 025293 148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 148 -----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~ 218 (255)
...+|+ +.++.. .+.. .++.+++.+.....++........+.++++.+++. .+.++..||+||+||++
T Consensus 79 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 79 YIRPVRKRIGM-VFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred hHHHHHhheEE-EecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 113455 444321 1111 25555555443333332222233456788888875 24678899999999999
Q ss_pred hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|+.+|++||+||||++||+.++..+.+++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 190 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
No 113
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9e-32 Score=233.85 Aligned_cols=165 Identities=15% Similarity=0.158 Sum_probs=123.5
Q ss_pred EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----------
Q 025293 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------- 147 (255)
Q Consensus 79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---------- 147 (255)
.++|+++.|++ +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 26 ~~~~~~~~~~~--~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 26 SKEEILKKTGQ--TV--GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhhcCC--ce--EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence 56799999987 34 4599999999999999999999999999999999998 99998 4444211
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
...+++ +..... ++ ..+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|++|
T Consensus 99 ~~~~~i~~-v~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 99 LRRKKISM-VFQSFA-LL-PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred hhcCcEEE-EecCcc-cC-CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 112444 333322 11 1246656555433222222111223456778888775 3677889999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|++||+||||++||+.++..+.++|.+
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~ 205 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLR 205 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998865
No 114
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=7.9e-32 Score=228.85 Aligned_cols=163 Identities=13% Similarity=0.136 Sum_probs=119.1
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (255)
|+++||++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SH--ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCC--eE--EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence 478999999986 33 5599999999999999999999999999999999998 99999 4444211
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhc-c--cCCccCCCCCcccccchhhhhhhc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-N--QGSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~--~~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
....++ +..+.. ++ ..+++.++..+.....+.. .......+++.++ + ..+.++..||+||+||+++|++++
T Consensus 74 ~~~i~~-~~q~~~-~~-~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 74 RAGIAY-VPQGRE-IF-PRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred HhCeEE-eccCCc-cc-CCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 112344 333322 11 1245555554332222111 1122344455443 2 356778899999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.+|+++|+||||++||+.++..+.++|.+
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~ 176 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRR 176 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 115
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.3e-32 Score=233.98 Aligned_cols=170 Identities=13% Similarity=0.159 Sum_probs=126.4
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
++|+++|+++.|++..+. +++|+||+|.+||+++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 6 ~~l~~~nl~~~~~~~~~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 80 (271)
T PRK13632 6 VMIKVENVSFSYPNSENN--ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENLKE 80 (271)
T ss_pred eEEEEEeEEEEcCCCCcc--ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCHHH
Confidence 579999999999632133 5599999999999999999999999999999999998 99998 4544221
Q ss_pred -CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 -~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
...+|+ +..+.. .+. ..++.+++.+.....++........+.++++.+++. .+..+..||+||+||+++|++|
T Consensus 81 ~~~~i~~-v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (271)
T PRK13632 81 IRKKIGI-IFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVL 157 (271)
T ss_pred HhcceEE-EEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 112444 333321 111 146666654433222221111122356778888775 4677889999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|++||+||||++||+.++..+.+++.+
T Consensus 158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~ 187 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKGKREIKKIMVD 187 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 116
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-31 Score=230.20 Aligned_cols=170 Identities=14% Similarity=0.093 Sum_probs=124.0
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (255)
+.+|+++||++.|++ +. +++|+||+|.+||+++|+||||||||||+++|+|+++ | ++|+ .+++...
T Consensus 2 ~~~l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 2 KFAIETVNLRVYYGS--NH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred cceEEEEeEEEEeCC--ee--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEcc
Confidence 458999999999976 33 5599999999999999999999999999999999986 6 4898 4444211
Q ss_pred ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC--CCccHHHHHHHHHhhccc------CCccCCCCC
Q 025293 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFD 210 (255)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~------~~~~~~~lS 210 (255)
...+++ +.++.. +. ..+++.+++.+.....+.. .......+..+++.+++. .+.++..||
T Consensus 75 ~~~~~~~~~~~~i~~-~~q~~~-~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 151 (253)
T PRK14267 75 SPDVDPIEVRREVGM-VFQYPN-PF-PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLS 151 (253)
T ss_pred ccccChHHHhhceeE-EecCCc-cC-CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCC
Confidence 112344 333322 11 1245556554432222211 111122345677777653 356778999
Q ss_pred cccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 211 ~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+||+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus 152 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 195 (253)
T PRK14267 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL 195 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998753
No 117
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2.2e-31 Score=223.91 Aligned_cols=166 Identities=16% Similarity=0.105 Sum_probs=124.5
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (255)
.++|+++|+++.|++ +. +++++||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++....
T Consensus 9 ~~~l~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 9 PPLLAAHALAFSRNE--EP--VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRS 81 (214)
T ss_pred cceEEEeeEEEecCC--ce--eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhh
Confidence 468999999999986 33 5599999999999999999999999999999999998 99998 45543211
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
...++ +..... .. ..+++.++........+ ........++++.+++. .+.++..||+||+||+++|++++.+
T Consensus 82 ~~i~~-~~q~~~-~~-~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 82 RFMAY-LGHLPG-LK-ADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred hceEE-eecCcc-cc-cCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcC
Confidence 12343 332221 11 12355555443322212 11223445677777765 4677889999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|+||||++||+.+++.+.+++.+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISA 182 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999864
No 118
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-31 Score=229.92 Aligned_cols=169 Identities=14% Similarity=0.143 Sum_probs=124.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (255)
..+|+++|+++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+ .+++...
T Consensus 5 ~~~l~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 5 EAIIETENLNLFYTD--FK--ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CceEEEeeeEEEeCC--ce--eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence 458999999999986 34 4599999999999999999999999999999999996 6 4788 4443211
Q ss_pred ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhcc------cCCccCCCCCc
Q 025293 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDH 211 (255)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lS~ 211 (255)
...+++ +.++... .. .++.+++.+.....+... ......+..+++.+++ ..+.++..|||
T Consensus 78 ~~~~~~~~~~~~i~~-v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg 153 (254)
T PRK14273 78 SNNFDILELRRKIGM-VFQTPNP-FL--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG 153 (254)
T ss_pred cccccHHHHhhceEE-Eeecccc-cc--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCH
Confidence 112444 3333222 11 466666654333222111 1112334566666665 24667889999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 196 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL 196 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998753
No 119
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.97 E-value=1.8e-31 Score=229.82 Aligned_cols=170 Identities=14% Similarity=0.173 Sum_probs=122.1
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC------CC
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------KP 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~------~~ 148 (255)
++|+++||++.|++ +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++.. ..
T Consensus 2 ~~l~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 2 PLLQVSGLSKSYGG--GK--GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ 74 (253)
T ss_pred ceEEEeeeEEEeCC--ce--EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence 47999999999976 33 4599999999999999999999999999999999998 99999 444321 10
Q ss_pred -----------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc---CCccCCCCCccc
Q 025293 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (255)
Q Consensus 149 -----------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~ 213 (255)
..+++ +..+........+++.++.......... ........+.++++.+++. .+..+..||+||
T Consensus 75 ~~~~~~~~~~~~~i~~-~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 75 LSEAERRRLMRTEWGF-VHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred CCHHHHHHhhhcceEE-EEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHH
Confidence 12344 3333211111112222333221111111 1111123456778888874 356788999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++|+.+|++||+||||++||+.+++.+.+++.+
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~ 193 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998865
No 120
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-31 Score=230.46 Aligned_cols=169 Identities=12% Similarity=0.118 Sum_probs=122.9
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC--
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~-- 147 (255)
.+++++|+++.|++ +. +|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+ .+++...
T Consensus 3 ~~l~i~~v~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~I~~~g~~~~~ 75 (258)
T PRK14241 3 KRIDVKDLNIYYGS--FH--AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE---VIPGARVEGEVLLDGEDLYG 75 (258)
T ss_pred ccEEEeeEEEEECC--Ee--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cccCCCcceEEEECCEeccc
Confidence 36899999999986 33 5599999999999999999999999999999999985 4 6898 4444211
Q ss_pred --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G 212 (255)
...++. +..+...+ ..+++.+++.+.....+. ........+..+++.+++. .+.++..||+|
T Consensus 76 ~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 152 (258)
T PRK14241 76 PGVDPVAVRRTIGM-VFQRPNPF--PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGG 152 (258)
T ss_pred cccChHHHhcceEE-EccccccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 112444 33322211 124555555443322221 1111122345667777652 35677899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 121
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.97 E-value=1.7e-31 Score=230.63 Aligned_cols=169 Identities=15% Similarity=0.174 Sum_probs=125.9
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
.+|+++||++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 4 ~~l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD 76 (257)
T ss_pred ccEEEeeeEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence 46899999999986 34 4599999999999999999999999999999999998 99998 4444211
Q ss_pred --------------CCCeEEEEecCCCCCCCccCCcccChHHHHH-hcCCCCCccHHHHHHHHHhhcccC---CccCCCC
Q 025293 148 --------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSF 209 (255)
Q Consensus 148 --------------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~l 209 (255)
...+++ +..+.. +. ..+++.++..+... ..+.........+.++++.+++.. +.++..|
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~-v~q~~~-l~-~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 153 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTM-VFQHFN-LW-SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153 (257)
T ss_pred cccccccchHHHHHhhceEE-EecCcc-cC-CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence 112444 333322 11 11455555543221 112211112334567888888753 5678899
Q ss_pred CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+||+++|++|+.+|+++|+||||++||+.+++.+.+++.+.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 198 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL 198 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988753
No 122
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-31 Score=230.65 Aligned_cols=169 Identities=14% Similarity=0.123 Sum_probs=124.6
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (255)
+++|+++|+++.|++ +. +|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+ .+++...
T Consensus 10 ~~~l~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 10 QPQIKVENLNLWYGE--KQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND---LIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred ceeEEEeeeEEEeCC--ee--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---cccCCCcceEEEECCEEcc
Confidence 568999999999976 33 5599999999999999999999999999999999985 4 7898 4443211
Q ss_pred ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G 212 (255)
....++ +..+.. +.. .++.+++.+.....+.........+..+++.+++. .+.++..||+|
T Consensus 83 ~~~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 158 (258)
T PRK14268 83 EPDVDVVELRKNVGM-VFQKPN-PFP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGG 158 (258)
T ss_pred cccchHHHHhhhEEE-EecCCc-cCc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHH
Confidence 112444 333221 211 45666665443333322111122345677777652 35677899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 159 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 200 (258)
T PRK14268 159 QQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 123
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=3.1e-31 Score=209.73 Aligned_cols=172 Identities=18% Similarity=0.182 Sum_probs=138.1
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-c-CCCCCC------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S-FDSQVK------ 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~-~~~~~~------ 147 (255)
.+|++++++|..+.....+.+|++|+|.|++||.++|+||+||||||||-+++|+.. |++|+ + .+....
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDA 81 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHH
Confidence 389999999999876666778899999999999999999999999999999999998 99999 3 333221
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhh
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la 220 (255)
...+|. +++ .|.+- +.++..+|+.......+-...........+++.++++. ..|+.+|||||+|||+||
T Consensus 82 rA~~R~~~vGf-VFQ-SF~Li-p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA 158 (228)
T COG4181 82 RAALRARHVGF-VFQ-SFHLI-PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA 158 (228)
T ss_pred HHHhhccceeE-EEE-eeecc-ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH
Confidence 234665 333 33322 23677888777766666432333345678899999884 578899999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||++..|+||+.||||-.||...-.++.+++-.
T Consensus 159 RAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ 191 (228)
T COG4181 159 RAFAGRPDVLFADEPTGNLDRATGDKIADLLFA 191 (228)
T ss_pred HHhcCCCCEEeccCCCCCcchhHHHHHHHHHHH
Confidence 999999999999999999999999999998754
No 124
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-31 Score=233.78 Aligned_cols=171 Identities=15% Similarity=0.085 Sum_probs=124.3
Q ss_pred eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
.|+++||++.|++... ...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence 3889999999975210 0115699999999999999999999999999999999998 99999 4444211
Q ss_pred -----CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchh
Q 025293 148 -----PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 148 -----~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~ 218 (255)
...+++ +.++. ..+.. .++.+++.+.....+.........+.++++.+++. .+.++..||+||+||++
T Consensus 79 ~~~~~~~~i~~-~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 79 DIKQIRKKVGL-VFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred CHHHHHhheEE-EeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 112444 34332 11111 35555554433222221111122345677777775 35778899999999999
Q ss_pred hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK 190 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999865
No 125
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-31 Score=233.55 Aligned_cols=173 Identities=15% Similarity=0.129 Sum_probs=125.9
Q ss_pred CeEEecCchheehhhhc--ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----
Q 025293 76 PVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~--~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (255)
+||+++||++.|++..+ ...+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence 58999999999974210 1125699999999999999999999999999999999998 99998 4444221
Q ss_pred ----CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293 148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 ----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la 220 (255)
...+|+ +.++.. .+.. .++.+++.+.....+.........+..+++.+++. .+.++..||+||+||+++|
T Consensus 80 ~~~~~~~i~~-v~q~~~~~~~~--~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 80 LWDIRNKAGM-VFQNPDNQIVA--TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred HHHHhhheEE-EecChhhhhcc--ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence 112444 333321 1111 23444443333222322222233456778877775 3577899999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+.+|+++|+||||++||+..+..+.++|.+.
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l 190 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKEL 190 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753
No 126
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-31 Score=228.67 Aligned_cols=164 Identities=15% Similarity=0.099 Sum_probs=122.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+|+++|+++.|++ +. +++|+||+|.+|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~~~l~~~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 1 MNEIEFKEVSYSSFG--KE--ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred CceEEEEeEEEEeCC--ee--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChH
Confidence 457899999999976 33 5599999999999999999999999999999999998 99998 4444211
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhh
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~ 222 (255)
....++ +..+.. +.. .++.++..+.... .......+.++++.+++. .+.++..||+||+||+++|++
T Consensus 74 ~~~~~i~~-~~q~~~-~~~--~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a 145 (241)
T PRK14250 74 DLRRKIGM-VFQQPH-LFE--GTVKDNIEYGPML----KGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART 145 (241)
T ss_pred HhhhcEEE-EecCch-hch--hhHHHHHhcchhh----cCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 122343 333322 111 2333332221111 111223456778888874 356788999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|++||+||||++||+.+++.+.++|.+
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 146 LANNPEVLLLDEPTSALDPTSTEIIEELIVK 176 (241)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 127
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=2.1e-31 Score=245.61 Aligned_cols=178 Identities=19% Similarity=0.199 Sum_probs=136.8
Q ss_pred CCCeEEecCchheehhh-------hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC
Q 025293 74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~-------~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~ 145 (255)
..++++++||+|.|... .+.+.+++||||++.+||++||+|+||||||||.|+|+|+++ |++|+ .+++.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence 45789999999999841 124567899999999999999999999999999999999998 99998 55443
Q ss_pred CCCC---------CeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc---CCccCCCCCcc
Q 025293 146 VKPP---------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (255)
Q Consensus 146 ~~~~---------~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G 212 (255)
.... ..-.+++++.+.--++.+++.+.+.......... .......+.++++.+++. .++|+++||||
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 2110 1223455555554444456655554444433321 122223467789999887 46899999999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||||++|||||+.+|++||+||||+.||+..+.++.++|.+.
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~l 475 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL 475 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999764
No 128
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=1.8e-31 Score=222.35 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=119.5
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CC
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP 149 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~ 149 (255)
|+++||++.|++ +. +++|+||+|++|+++||+|+||||||||+++|+|+++ |++|+ .+++... ..
T Consensus 1 l~i~~l~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDG--RA--LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR 73 (201)
T ss_pred CEEEEEEEEeCC--ce--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence 478999999986 33 5599999999999999999999999999999999998 99998 4443221 11
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~ 227 (255)
..++ +..... +. ...++.++..... .......+..+++.+++. .+.++..||+||+||+++|++++.+|
T Consensus 74 ~i~~-~~q~~~-~~-~~~tv~e~l~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 74 GLLY-LGHAPG-IK-TTLSVLENLRFWH------ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred heEE-eccccc-cC-CCcCHHHHHHhhc------ccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 2333 222211 11 1134433332211 111234566777877775 35678899999999999999999999
Q ss_pred cEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++|+||||++||+..++.+.+++.+
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~ 170 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAG 170 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 129
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=3.6e-31 Score=220.41 Aligned_cols=162 Identities=16% Similarity=0.106 Sum_probs=121.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (255)
||+++|+++.|++ +. +++|+||+|++||++||+||||||||||+++|+|+.+ |++|+ .+++....
T Consensus 1 ml~~~~l~~~~~~--~~--il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHD--QP--LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCC--ee--EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence 4789999999986 34 5599999999999999999999999999999999998 99998 45543211
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
...++ +..+.. ++ ...++.++..+... ... ....+.++++.+++. .+.++..||+||+||+++|++++.+
T Consensus 74 ~~i~~-~~q~~~-~~-~~~tv~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~ 145 (200)
T PRK13540 74 KQLCF-VGHRSG-IN-PYLTLRENCLYDIH---FSP--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSK 145 (200)
T ss_pred hheEE-eccccc-cC-cCCCHHHHHHHHHh---cCc--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 12343 332221 11 12455554443211 111 123456777777764 3566779999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|++||+||||++||+.++..+.+++.+
T Consensus 146 p~~lilDEP~~~LD~~~~~~l~~~l~~ 172 (200)
T PRK13540 146 AKLWLLDEPLVALDELSLLTIITKIQE 172 (200)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 130
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.6e-31 Score=227.93 Aligned_cols=171 Identities=16% Similarity=0.133 Sum_probs=123.6
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~---- 147 (255)
.++|+++||++.|++ +. +++|+||+|++||+++|+||||||||||+++|+|+.... .|++|+ .+++...
T Consensus 4 ~~~l~~~~l~~~~~~--~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 4 PPKMEARGLSFFYGD--FQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CcEEEEeeeEEEECC--ee--eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 368999999999976 33 559999999999999999999999999999999986200 037898 4444211
Q ss_pred ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k 214 (255)
...+++ +.++.. .+. .++.+++.+.....+... ......+..+++.+++. .+..+..||+||+
T Consensus 80 ~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 80 VDVVELRRRVGM-VFQKPN-PFP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQ 155 (253)
T ss_pred cCHHHHhhcEEE-EecCCC-CCc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 112444 333322 221 255555544333222211 11223455677777663 2566789999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE 194 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875
No 131
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.97 E-value=1.6e-31 Score=240.32 Aligned_cols=159 Identities=14% Similarity=0.181 Sum_probs=123.8
Q ss_pred heehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC-----------CCCe
Q 025293 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK-----------PPDV 151 (255)
Q Consensus 85 k~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~-----------~~~~ 151 (255)
|.|++ +. +++|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++. +. ...+
T Consensus 1 ~~~~~--~~--~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i 73 (363)
T TIGR01186 1 KKTGG--KK--GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI 73 (363)
T ss_pred CccCC--ce--eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence 45766 33 5699999999999999999999999999999999998 99999 45543 21 2245
Q ss_pred EEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcE
Q 025293 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~i 229 (255)
|+ +.+... ++ +.+++.+++.+.....+.........+.++++.+++. .+.++..|||||+|||++|++|+.+|+|
T Consensus 74 ~~-v~Q~~~-l~-~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i 150 (363)
T TIGR01186 74 GM-VFQQFA-LF-PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI 150 (363)
T ss_pred EE-EECCCc-CC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 65 333322 22 2257777777665554443222344567888888886 4678889999999999999999999999
Q ss_pred EEEcCCCCCCChhHHHHHHHHHHh
Q 025293 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 230 lllDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||||||++||+..+..+.+++.+
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~~ 174 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELKK 174 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999998865
No 132
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.3e-31 Score=231.29 Aligned_cols=170 Identities=14% Similarity=0.130 Sum_probs=124.1
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----- 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----- 148 (255)
++|+++|+++.|++..+. +++|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 6 ~~l~i~~l~~~~~~~~~~--~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASF--TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred ceEEEEEEEEEcCCCCCc--ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHH
Confidence 579999999999752122 5599999999999999999999999999999999998 99998 4544321 1
Q ss_pred --CCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 149 --~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
...++ +..+.. .+.. .++.++..+.....+.........+..+++.+++. .+.++..||+||+||+++|+++
T Consensus 81 ~~~~i~~-v~q~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (269)
T PRK13648 81 LRKHIGI-VFQNPDNQFVG--SIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL 157 (269)
T ss_pred HHhheeE-EEeChHHhccc--ccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH
Confidence 12444 333321 1111 23333333322222221111223456778877775 3567889999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|++||+||||++||+.++..+.+++.+
T Consensus 158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 187 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRK 187 (269)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998865
No 133
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=1.7e-31 Score=229.88 Aligned_cols=166 Identities=15% Similarity=0.144 Sum_probs=121.9
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (255)
|+++||++.|++ +. +++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 1 i~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 73 (252)
T TIGR03005 1 VRFSDVTKRFGI--LT--VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP 73 (252)
T ss_pred CEEEEEEEEeCC--ee--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence 478999999976 33 5599999999999999999999999999999999998 99998 4444211
Q ss_pred ------------CCCeEEEEecCCCCCCCccCCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcc
Q 025293 148 ------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHG 212 (255)
Q Consensus 148 ------------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G 212 (255)
....++ +..+.. +. ...++.+++..... ..+.........+.++++.+++. .+..+..||+|
T Consensus 74 ~~~~~~~~~~~~~~~i~~-v~q~~~-~~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 74 LVPADEKHLRQMRNKIGM-VFQSFN-LF-PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG 150 (252)
T ss_pred ccccchhHHHHHhhCeEE-EecCcc-cC-CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence 112444 333322 11 12455555543221 11221111223456777777765 34667899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+++|++|+.+|+++|+||||++||+.++..+.++|.+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRR 191 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998875
No 134
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.97 E-value=3.5e-31 Score=230.00 Aligned_cols=173 Identities=17% Similarity=0.135 Sum_probs=124.2
Q ss_pred CCeEEecCchheehhh-------hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC
Q 025293 75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV 146 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~-------~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~ 146 (255)
|++|+++||++.|++. .+. +++|+||+|.+|++++|+||||||||||+++|+|+++ |++|+ .+++..
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~ 75 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQT--VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEP 75 (268)
T ss_pred CceEEEeceEEEecCCccccccCcee--eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEe
Confidence 4689999999999730 133 5599999999999999999999999999999999998 99998 444431
Q ss_pred C-----------CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc---CCccCCCCCc
Q 025293 147 K-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (255)
Q Consensus 147 ~-----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~ 211 (255)
. ....++ +..+.........++.++..+.... .+.........+.++++.+++. .+..+..||+
T Consensus 76 ~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 154 (268)
T PRK10419 76 LAKLNRAQRKAFRRDIQM-VFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSG 154 (268)
T ss_pred ccccChhHHHHHHhcEEE-EEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCCh
Confidence 1 113444 4433211111113333333221111 1111111223456788888774 3577889999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+||+++|++|+.+|++||+||||++||+.++..+.++|.+
T Consensus 155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 196 (268)
T PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK 196 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998865
No 135
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.4e-31 Score=229.40 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=123.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
+|+++|+++.|++ +. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~~~~--~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGT--KR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECC--EE--EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence 6899999999986 34 5599999999999999999999999999999999998 99998 4444211
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHH----hcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~ 221 (255)
....++ +..+.... ..+++.++..+... ..+.........+..+++.+++. .+.++..||+||+||+++|+
T Consensus 75 ~~~i~~-~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 75 ARRLAL-LPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred hhheEE-ecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence 112444 33332211 12344444332110 01111111223456677777775 36778899999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+++.+|++||+||||++||+.++..+.+++.+.
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l 184 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998653
No 136
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.4e-31 Score=228.40 Aligned_cols=173 Identities=12% Similarity=0.061 Sum_probs=124.2
Q ss_pred CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCCc-cCCCCCC---
Q 025293 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK--- 147 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~--~~~p~~G~-~~~~~~~--- 147 (255)
...+|+++|+++.|++ +. +|+|+||+|++||+++|+||||||||||+++|+|+++ ...|++|+ .+++...
T Consensus 10 ~~~~l~~~~l~~~~~~--~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~ 85 (260)
T PRK10744 10 APSKIQVRNLNFYYGK--FH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP 85 (260)
T ss_pred CCceEEEEEEEEEeCC--eE--EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence 4568999999999986 33 5599999999999999999999999999999999974 01137898 4443211
Q ss_pred -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccc------CCccCCCCCccc
Q 025293 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (255)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~ 213 (255)
...+++ +..+.. +.. .++.++..+..... +.........+.++++.+++. .+.++..||+||
T Consensus 86 ~~~~~~~~~~i~~-~~q~~~-~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 86 KQDIALLRAKVGM-VFQKPT-PFP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQ 161 (260)
T ss_pred ccchHHHhcceEE-EecCCc-cCc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHH
Confidence 122444 333321 111 35555544332221 121111123456677777753 356778999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+++|++|+.+|++||+||||++||+.+++.+.+++.+.
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 202 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL 202 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 137
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=2.5e-31 Score=248.16 Aligned_cols=200 Identities=18% Similarity=0.155 Sum_probs=144.3
Q ss_pred hHHHHhhCcCCCCccccccchhhhhhhhHH------------------hhhc-ccCCCeEEecCchheehhhhccccccc
Q 025293 38 SFSWIRRNANAQPVFGKTRSLVQNKTSLKV------------------LCSQ-RREIPVVEARCMDEVYDALAQRLLPTS 98 (255)
Q Consensus 38 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~-~~~~~~l~v~~lsk~y~~~~~~il~l~ 98 (255)
.++|++|+.+++.+..+++++.+++++++. .... ..+..+++++|+++.|++. +. +++
T Consensus 263 ~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~--l~~ 339 (530)
T COG0488 263 EQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RL--LLK 339 (530)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC-ce--eec
Confidence 358999977666554445555554444441 0111 2335689999999999763 33 459
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHH
Q 025293 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (255)
Q Consensus 99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~ 178 (255)
++||.|.+|+++||+||||+|||||||+|+|.+. |.+|+ ..+|..+.+.+|.+....+.....+. ..
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~--------v~~g~~v~igyf~Q~~~~l~~~~t~~--d~ 406 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGT--------VKVGETVKIGYFDQHRDELDPDKTVL--EE 406 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCce--------EEeCCceEEEEEEehhhhcCccCcHH--HH
Confidence 9999999999999999999999999999999998 88885 22333344445554433222111121 11
Q ss_pred hcCCCCCccHHHHHHHHHhhcccC---CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 179 RRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
....++......+...+..|+|.. .+++..||||||.|+.+|+.+..+|.+|||||||+.||..+...+.+.|..
T Consensus 407 l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~ 484 (530)
T COG0488 407 LSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD 484 (530)
T ss_pred HHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh
Confidence 111222222567889999999974 578899999999999999999999999999999999999999999988753
No 138
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.3e-31 Score=223.12 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=119.9
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCC
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~ 150 (255)
|+++|+++.|++ +. .|+||+|.+||+++|+||||||||||+++|+|+++ |++|+ .+++... ...
T Consensus 1 i~~~~l~~~~~~--~~----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGE--QP----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP 71 (211)
T ss_pred CEEEeEEEEeCC--Ee----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence 468999999975 21 39999999999999999999999999999999998 99998 4444211 112
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
.++ +.++...+ ..+++.++..+...............+.++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 72 i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ 148 (211)
T cd03298 72 VSM-LFQENNLF--AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP 148 (211)
T ss_pred EEE-EecccccC--CCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 454 34332211 1135544443221110000111233456778887775 356778999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|+||||++||+.+++.+.+++.+
T Consensus 149 llllDEP~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 149 VLLLDEPFAALDPALRAEMLDLVLD 173 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 139
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.2e-31 Score=233.62 Aligned_cols=172 Identities=12% Similarity=0.054 Sum_probs=124.1
Q ss_pred CeEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
..|+++||++.|++... ...+++|+||+|++||++||+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 81 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKK 81 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEccccccc
Confidence 36899999999975210 0125599999999999999999999999999999999998 99998 4443211
Q ss_pred -------CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccc
Q 025293 148 -------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 216 (255)
Q Consensus 148 -------~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqr 216 (255)
...+++ +.++. +.... .++.+++.+.....+.........+..+++.+++. .+.++..||+||+||
T Consensus 82 ~~~~~~~~~~i~~-v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 82 IKEVKRLRKEIGL-VFQFPEYQLFQ--ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRR 158 (289)
T ss_pred cccHHHHhccEEE-EEeCcchhhhh--hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence 112444 33332 11111 24555554433222221111123345677777773 357788999999999
Q ss_pred hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++|++|+.+|++|||||||++||+.+++.+.++|.+
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 195 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFER 195 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998865
No 140
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.5e-31 Score=229.20 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=124.2
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (255)
+.+|+++||++.|++ +. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+ .+++...
T Consensus 17 ~~~l~~~nl~~~~~~--~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQ--ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND---TIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CceEEEEeEEEEECC--EE--EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEECc
Confidence 458999999999986 34 5599999999999999999999999999999999985 4 7898 4444211
Q ss_pred ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-C-CccHHHHHHHHHhhccc------CCccCCCCC
Q 025293 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-W-TFNPLLLLNCLKNLRNQ------GSVYAPSFD 210 (255)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~l~~~------~~~~~~~lS 210 (255)
...+++ +..+.. ... .++.+++.+.....+.. . ......+..+++.+++. .+.++..||
T Consensus 90 ~~~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 165 (267)
T PRK14235 90 DPRLDVVELRARVGM-VFQKPN-PFP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLS 165 (267)
T ss_pred ccccchHHHhhceEE-EecCCC-CCC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCC
Confidence 112444 333322 111 25555554433222221 1 11123456677777763 245678999
Q ss_pred cccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 211 ~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+||+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l 209 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL 209 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998753
No 141
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.97 E-value=6.3e-31 Score=226.33 Aligned_cols=160 Identities=17% Similarity=0.144 Sum_probs=119.9
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (255)
++|+++||++.|++ +. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++ ....++
T Consensus 3 ~~l~~~~l~~~~~~--~~--vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~---~~~i~~- 71 (251)
T PRK09544 3 SLVSLENVSVSFGQ--RR--VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNG---KLRIGY- 71 (251)
T ss_pred cEEEEeceEEEECC--ce--EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECC---ccCEEE-
Confidence 48999999999986 33 5599999999999999999999999999999999998 99998 3433 123454
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEE
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illl 232 (255)
+.++.. +.. .++ .... ....+........+..+++.+++. .+.++..||+||+||+++|++++.+|+++|+
T Consensus 72 v~q~~~-~~~-~l~--~~~~---~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 144 (251)
T PRK09544 72 VPQKLY-LDT-TLP--LTVN---RFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL 144 (251)
T ss_pred eccccc-ccc-ccC--hhHH---HHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 333321 110 011 0111 111111112234566778888775 3567889999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHh
Q 025293 233 DGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 233 Dep~~~LD~~~~~~l~~ll~~ 253 (255)
||||++||+.++..+.++|.+
T Consensus 145 DEPt~~LD~~~~~~l~~~L~~ 165 (251)
T PRK09544 145 DEPTQGVDVNGQVALYDLIDQ 165 (251)
T ss_pred eCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999998864
No 142
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.7e-31 Score=229.83 Aligned_cols=177 Identities=17% Similarity=0.203 Sum_probs=129.4
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCCc-cCCCC-CC-----
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQ-VK----- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~--~~p~~G~-~~~~~-~~----- 147 (255)
+|+++||+..|......+.+++||||+|++||++||+|.|||||||+.+.|.|+++. ..-.+|+ .+++. +.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 478999999997643345578999999999999999999999999999999999940 0013455 34443 11
Q ss_pred ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC-C-CCCccHHHHHHHHHhhcccC-----CccCCCCCcccc
Q 025293 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~~-----~~~~~~lS~G~k 214 (255)
...++. |+++...-.++-+++.+.......... . ..........++++.+++.. +.|+.+|||||+
T Consensus 81 ~~~~iRG~~I~m-IfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 81 ELRKIRGKEIAM-IFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHhhcCceEEE-EEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 123444 555544333332343333333332211 1 12223456788899999873 688999999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||.||.+|+.+|++||.||||++||...+.++.++|++.
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l 199 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKEL 199 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 143
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.5e-31 Score=227.62 Aligned_cols=169 Identities=14% Similarity=0.169 Sum_probs=122.8
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (255)
|++|+++||++.|++ +. +++++||+|++||+++|+|+||||||||+++|+|+++ | ++|+ .+++...
T Consensus 1 ~~~l~~~~l~~~~~~--~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 1 EPIIEIENFSAYYGE--KK--AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND---HIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred CceEEEEeeEEEeCC--ce--eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCCCcceEEEECCEEcc
Confidence 458999999999976 33 5599999999999999999999999999999999985 4 7898 4444211
Q ss_pred ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCc
Q 025293 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (255)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~ 211 (255)
...+++ +.++.. +.. .++.+++.+.....+... ......+..+++.+++. .+..+..||+
T Consensus 74 ~~~~~~~~~~~~i~~-~~q~~~-~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 149 (250)
T PRK14262 74 DPQLDVTEYRKKVGM-VFQKPT-PFP--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSG 149 (250)
T ss_pred cchhhHHHhhhhEEE-EecCCc-cCc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCH
Confidence 122444 333322 111 355555544332222211 11122345566666653 3567789999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus 150 Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14262 150 GQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL 192 (250)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998753
No 144
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.6e-31 Score=230.45 Aligned_cols=169 Identities=18% Similarity=0.120 Sum_probs=123.7
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
.++|+++||++.|++ +. +++|+||+|++|++++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 9 ~~~l~i~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 9 DTTFALRNVSFRVPG--RT--LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSK 81 (265)
T ss_pred CceEEEeeEEEEECC--EE--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHH
Confidence 357999999999976 33 5599999999999999999999999999999999998 99999 4444211
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHH-hcC---CCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRG---APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l 219 (255)
....++ +..+...+ ..+++.+++.+... ..+ .........+.++++.+++. .+.++..|||||+||+++
T Consensus 82 ~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 158 (265)
T PRK10575 82 AFARKVAY-LPQQLPAA--EGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWI 158 (265)
T ss_pred HHhhheEE-eccCCCCC--CCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHH
Confidence 112444 33321111 11344444432110 000 01111223456777877775 366788999999999999
Q ss_pred hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|++++.+|++||+||||++||+.++..+.++|.+
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192 (265)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998865
No 145
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.8e-31 Score=227.74 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=119.7
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P---- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~---- 148 (255)
|++|+++||++.|++ +. +++++||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 3 ~~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 3 KVMLSFDKVSAHYGK--IQ--ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred ccEEEEEeEEEeeCC--ce--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence 468999999999976 33 5599999999999999999999999999999999998 99998 4444321 1
Q ss_pred ----CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhh-ccc--CCccCCCCCcccccchhhhh
Q 025293 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~--~~~~~~~lS~G~kqrv~la~ 221 (255)
..+++ +..+.. .+ ..+++.++........ ........+..+++.+ ++. .+.++..||+||+||+++|+
T Consensus 76 ~~~~~~i~~-~~q~~~-~~-~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 76 KIMREAVAI-VPEGRR-VF-SRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred HHHHhCEEE-eccCcc-cC-CCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHH
Confidence 12343 333221 11 1134444443321110 1111112233444544 232 35677899999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+|+++|+||||++||+.++..+.+++.+
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 182 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999865
No 146
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.4e-31 Score=231.87 Aligned_cols=169 Identities=16% Similarity=0.142 Sum_probs=125.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
||+++||++.|++. +. +++|+||+|.+||++||+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~l~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 1 ILETRDLKYSYPDG-TE--ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred CEEEEEEEEEeCCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchHH
Confidence 47899999999641 23 5599999999999999999999999999999999998 99998 4444321
Q ss_pred --CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 148 --PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 --~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
...+++ +.++.. .... .++.+++.+.....+.........+.++++.+++. .+.++..||+||+||+++|++
T Consensus 75 ~~~~~i~~-v~q~~~~~~~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 75 EVRKTVGI-VFQNPDDQLFA--PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred HHHhheEE-EeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 112454 444421 1111 35556554433222221111223456788888775 467788999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++.+|+++|+||||++||+.++..+.+++.+.
T Consensus 152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l 183 (275)
T PRK13639 152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL 183 (275)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998753
No 147
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.97 E-value=6.9e-31 Score=226.46 Aligned_cols=166 Identities=14% Similarity=0.144 Sum_probs=121.7
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC----CCCc-cCCCCCC----
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQVK---- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p----~~G~-~~~~~~~---- 147 (255)
+|+++||++.| + +. +++|+||+|.+||+++|+|+||||||||+++|+|+++ | ++|+ .+++...
T Consensus 4 ~l~~~~l~~~~-~--~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQA-A--QP--LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEe-c--cc--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence 68999999999 4 33 5599999999999999999999999999999999997 7 8998 4444321
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC-----CccCCCCCcccccchhhh
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~lS~G~kqrv~la 220 (255)
...+++ +..+.........++.++........+. ......+.++++.+++.. +..+..||+||+||+++|
T Consensus 76 ~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 76 LRGRKIAT-IMQNPRSAFNPLHTMHTHARETCLALGK--PADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred cccceEEE-EecCCccccCccccHHHHHHHHHHHcCC--ChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHH
Confidence 112444 3433211111112322222222122222 122345677888888764 567889999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|+.+|++||+||||++||+.++..+.+++.+
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~ 185 (254)
T PRK10418 153 LALLCEAPFIIADEPTTDLDVVAQARILDLLES 185 (254)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998865
No 148
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.6e-31 Score=254.21 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=131.3
Q ss_pred CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----
Q 025293 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (255)
.+++|+++||++.|++......+++||||+|++||++||+|+||||||||+|+|+|+++ |++|+ .+++...
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEeccccc
Confidence 35689999999999642111225699999999999999999999999999999999998 89998 3433100
Q ss_pred -----------------CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc-----CCc
Q 025293 148 -----------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSV 204 (255)
Q Consensus 148 -----------------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-----~~~ 204 (255)
...+|. +.++........+++.+++.+.... .++........+.++++.+++. .+.
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~-v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 164 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAM-IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR 164 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEE-EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC
Confidence 123555 4443210111225666766654332 1332222234567888888884 367
Q ss_pred cCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 205 ~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++..|||||+|||+||++|+.+|++||+||||++||+..+.++.+++.+.
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l 214 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL 214 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999763
No 149
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.97 E-value=3.3e-31 Score=239.43 Aligned_cols=163 Identities=15% Similarity=0.087 Sum_probs=124.7
Q ss_pred cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-----CC-------
Q 025293 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-----VK------- 147 (255)
Q Consensus 81 ~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-----~~------- 147 (255)
.++.+.|+.. . +++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++. ..
T Consensus 28 ~~~~~~~g~~--~--~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l 100 (382)
T TIGR03415 28 EEILDETGLV--V--GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATL 100 (382)
T ss_pred HHHHHhhCCE--E--EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHH
Confidence 3566777662 2 6699999999999999999999999999999999998 99999 55542 11
Q ss_pred ----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~ 221 (255)
....++ +.+.. .++ +.+++.+++.+.....++..........++++.+++. .+.++..|||||+||+++|+
T Consensus 101 ~~~r~~~i~~-vfQ~~-~l~-p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LAR 177 (382)
T TIGR03415 101 RRLRTHRVSM-VFQKF-ALM-PWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLAR 177 (382)
T ss_pred HHHhcCCEEE-EECCC-cCC-CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 023555 33332 222 1257777776654444433322334567888888886 36778899999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|+.+|+|||+||||++||+..+..+.++|.+
T Consensus 178 ALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~ 209 (382)
T TIGR03415 178 AFAMDADILLMDEPFSALDPLIRTQLQDELLE 209 (382)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 150
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.1e-31 Score=231.93 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=126.5
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC---Cc-cCCCCCC----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQVK---- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~---G~-~~~~~~~---- 147 (255)
.+|+++|+++.|++..+. +++++||+|.+||++||+||||||||||+++|+|+++ |++ |+ .+++...
T Consensus 4 ~~l~i~~l~~~~~~~~~~--~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~ 78 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKP--ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKT 78 (282)
T ss_pred ceEEEEEEEEEcCCCCcc--ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCC
Confidence 479999999999652223 5699999999999999999999999999999999997 887 77 4444321
Q ss_pred ----CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293 148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 ----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la 220 (255)
...+|+ +..+.. .+. ..++.+++.+.....+.........+.++++.+++. .+.++..||+||+||+++|
T Consensus 79 ~~~~~~~ig~-v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~la 155 (282)
T PRK13640 79 VWDIREKVGI-VFQNPDNQFV--GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIA 155 (282)
T ss_pred HHHHHhheEE-EEECHHHhhc--cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHH
Confidence 123455 443321 111 146666665433333322111223456778888776 3677889999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|+.+|++||+||||++||+.++..+.+++.+
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~ 188 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRK 188 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999865
No 151
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.97 E-value=4.9e-31 Score=221.59 Aligned_cols=165 Identities=16% Similarity=0.164 Sum_probs=121.1
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCC
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~ 150 (255)
++++||++.|+. .+.|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... ...
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 468999999974 3489999999999999999999999999999999998 99998 4544321 122
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
.++ +..+.. ++ ..+++.+++.+...............+.++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 72 i~~-v~q~~~-~~-~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 148 (213)
T TIGR01277 72 VSM-LFQENN-LF-AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP 148 (213)
T ss_pred eEE-EeccCc-cC-CCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 444 333322 11 1245555544321111001111223456678888775 356778999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+||||++||+.++..+.++|.+.
T Consensus 149 llllDEPt~~LD~~~~~~~~~~l~~~ 174 (213)
T TIGR01277 149 ILLLDEPFSALDPLLREEMLALVKQL 174 (213)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988753
No 152
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=229.61 Aligned_cols=173 Identities=16% Similarity=0.203 Sum_probs=140.1
Q ss_pred CCeEEecCchheehhhhc--------------------ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc
Q 025293 75 IPVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI 134 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~--------------------~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~ 134 (255)
+..|+++||+|.||.+.+ -++-++|+||+|++|||+.|+|-||||||||+|+|+++++
T Consensus 2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie-- 79 (386)
T COG4175 2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-- 79 (386)
T ss_pred CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--
Confidence 356889999999986321 2446789999999999999999999999999999999999
Q ss_pred CCCCCc-cCCCCC-C-----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc
Q 025293 135 WPQKAS-SFDSQV-K-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 201 (255)
Q Consensus 135 ~p~~G~-~~~~~~-~-----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 201 (255)
|++|+ .+++.. . ..+.+.+++..+... ..++.+|..+..+..|++.........++++.+++.
T Consensus 80 -pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP---hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~ 155 (386)
T COG4175 80 -PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP---HRTVLENVAFGLEVQGVPKAEREERALEALELVGLE 155 (386)
T ss_pred -CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc---chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch
Confidence 99999 454432 1 223444222223222 258888888888888888777777888999999986
Q ss_pred --CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 202 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 202 --~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.+.|+++|||||+|||.+||||+.+|+|||+||||+.|||--+.++.+.+.+
T Consensus 156 ~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~ 209 (386)
T COG4175 156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLE 209 (386)
T ss_pred hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999998888877654
No 153
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4e-31 Score=224.89 Aligned_cols=164 Identities=17% Similarity=0.209 Sum_probs=120.7
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CC
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~ 149 (255)
||+++||++.|++. . .|+||+|.+|+++||+||||||||||+++|+|+++ |++|+ .+++... ..
T Consensus 1 ~l~~~~l~~~~~~~----~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHHL----P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred CeEEEEEEEEECCc----c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence 47899999999751 1 48999999999999999999999999999999998 99999 4554321 12
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
..++ +..+.. ++ ..+++.+++.+.... ... .......+.++++.+++. .+.++..||+||+||+++|++++.+
T Consensus 72 ~i~~-~~q~~~-~~-~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 147 (232)
T PRK10771 72 PVSM-LFQENN-LF-SHLTVAQNIGLGLNP-GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVRE 147 (232)
T ss_pred cEEE-Eecccc-cc-cCCcHHHHHhccccc-ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 2444 333221 11 113444444321110 110 111233466778888775 4677889999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|+||||++||+.+++.+.+++.+
T Consensus 148 p~lllLDEP~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 148 QPILLLDEPFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 154
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.97 E-value=5e-31 Score=225.52 Aligned_cols=167 Identities=19% Similarity=0.081 Sum_probs=119.0
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCCc-cCCCCCC-C-----
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVK-P----- 148 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p~~G~-~~~~~~~-~----- 148 (255)
|+++||++.|++ +. +|+|+||+|++||+++|+||||||||||+|+|+|++ + |++|+ .+++... .
T Consensus 1 l~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVED--KE--ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred CeEeeEEEEECC--EE--EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence 478999999986 33 559999999999999999999999999999999994 5 89998 4444311 1
Q ss_pred ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcC-CC-----C-CccHHHHHHHHHhhccc---CCccCC-CCCcccc
Q 025293 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-AP-----W-TFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVG 214 (255)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~-----~-~~~~~~~~~~l~~l~~~---~~~~~~-~lS~G~k 214 (255)
...++ +.++...+ ..+++.++......... .. . ......+..+++.+++. .+..+. .||+||+
T Consensus 74 ~~~~~i~~-v~q~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 74 RARAGLFL-AFQYPEEI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred hhccceEe-eecccccc--CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHH
Confidence 11233 22222111 12344444433222111 10 0 01123456778888875 245555 4999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 190 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL 190 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 155
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.6e-31 Score=225.74 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=123.8
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (255)
.++|+++|+++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+.+ | ++|+ .+++...
T Consensus 2 ~~~l~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 2 KIKMESKNLNLWYGE--KQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred ccEEEEEEeEEEECC--ee--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEecc
Confidence 368999999999976 33 5599999999999999999999999999999999985 5 7898 4444221
Q ss_pred ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc------CCccCCCCCc
Q 025293 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (255)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~lS~ 211 (255)
....++ +..+... .. .++.++..+.....+.. .......+..+++.+++. .+.++..||+
T Consensus 75 ~~~~~~~~~~~~i~~-~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 150 (251)
T PRK14270 75 DKDVDVVELRKRVGM-VFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG 150 (251)
T ss_pred cccccHHHHHhheEE-EecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence 112444 4433322 11 35555555433322221 111122345677777652 3567889999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+||+++|++++.+|++||+||||++||+.++..+.+++.+
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~ 192 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE 192 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
No 156
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.97 E-value=3.8e-31 Score=225.70 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=111.6
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CCCeEEEEecCCCCCCCccC
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PPDVATVLPMDGFHLYLSQL 167 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~~~g~~i~~~~~~~~~~~l 167 (255)
+|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+ .+++... ....++ +..+...+. ..+
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~-~~~ 110 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGV-VFGQKTQLW-WDL 110 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEE-EcCCccccC-CCC
Confidence 5699999999999999999999999999999999998 99999 4444211 112333 221111111 124
Q ss_pred CcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHH
Q 025293 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (255)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~ 245 (255)
++.++..+.....+............+++.+++. .+.++..||+||+||+++|++|+.+|++||+||||++||+.++.
T Consensus 111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 190 (236)
T cd03267 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190 (236)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 5555554433333322111223345677777765 35677899999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 025293 246 DVSSMFDE 253 (255)
Q Consensus 246 ~l~~ll~~ 253 (255)
.+.++|.+
T Consensus 191 ~l~~~l~~ 198 (236)
T cd03267 191 NIRNFLKE 198 (236)
T ss_pred HHHHHHHH
Confidence 99999875
No 157
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.1e-31 Score=227.20 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=122.9
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----- 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----- 148 (255)
.+|+++|+++.|++ +. +++++||+|.+|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 4 ~~l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 4 PLLSVSGLMMRFGG--LL--AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred ceEEEeeEEEEECC--EE--EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence 47999999999976 33 5599999999999999999999999999999999998 99998 4444321 1
Q ss_pred ---CCeEEEEecCCCCCCCccCCcccChHHHHHhc-------CCC------CC--ccHHHHHHHHHhhccc--CCccCCC
Q 025293 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP------WT--FNPLLLLNCLKNLRNQ--GSVYAPS 208 (255)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~------~~--~~~~~~~~~l~~l~~~--~~~~~~~ 208 (255)
..+++ +..+.. ++ ..+++.+++.+..... +.. .. .....+.++++.+++. .+.++..
T Consensus 77 ~~~~~i~~-~~q~~~-~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (255)
T PRK11300 77 IARMGVVR-TFQHVR-LF-REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGN 153 (255)
T ss_pred HHhcCeEE-eccCcc-cC-CCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhh
Confidence 11222 232221 11 1245555544322100 110 00 0112345667777765 3677889
Q ss_pred CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+||+||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus 154 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~ 198 (255)
T PRK11300 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAE 198 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999865
No 158
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9e-31 Score=226.31 Aligned_cols=172 Identities=13% Similarity=0.119 Sum_probs=123.0
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCCc-cCCCCCC----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~--~~~p~~G~-~~~~~~~---- 147 (255)
+++|+++|+++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+++ ..+|++|+ .+++...
T Consensus 10 ~~~l~i~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 10 QEVYQINGMNLWYGQ--HH--ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred CceEEEeeEEEEECC--ee--eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 468999999999986 33 5599999999999999999999999999999999984 00115888 4444211
Q ss_pred ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k 214 (255)
...+|+ +..+... .. .++.++..+.....+... ......+..+++.+++. .+..+..||+||+
T Consensus 86 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 86 VDLVELRKNIGM-VFQKGNP-FP--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred cCHHHHhhceEE-EecCCcc-cc--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 112444 3333221 11 245555543332222111 11122345667776653 3567789999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|+++|+||||++||+.++..+.++|.+.
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 201 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998763
No 159
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=4.5e-31 Score=210.47 Aligned_cols=161 Identities=17% Similarity=0.227 Sum_probs=118.2
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCC
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD 150 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~ 150 (255)
++.|+++||.|.||... +|++||++..+|+++.|||.+|||||||||||+-+.. |+.|. .+++... ...
T Consensus 4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence 45789999999999855 6699999999999999999999999999999999988 99997 3443321 111
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHh--------------------------hccc--
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKN--------------------------LRNQ-- 201 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~--------------------------l~~~-- 201 (255)
-|.....+ ...+..++...++ ++.++....+++++| +++.
T Consensus 77 ~G~l~~ad-----------~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek 145 (256)
T COG4598 77 DGQLKPAD-----------KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK 145 (256)
T ss_pred CCCeeeCC-----------HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh
Confidence 12111110 0112223333333 444444444444444 4443
Q ss_pred CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 202 ~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.+.|+..|||||+||++|||+|+.+|+++++||||+.|||+-.-++..++..
T Consensus 146 ~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~ 197 (256)
T COG4598 146 ADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQD 197 (256)
T ss_pred hhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999999999988888887765
No 160
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.6e-31 Score=225.41 Aligned_cols=168 Identities=16% Similarity=0.162 Sum_probs=122.6
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCC---CCCc-cCCCCCC--
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWP---QKAS-SFDSQVK-- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p---~~G~-~~~~~~~-- 147 (255)
++|+++||++.|++ +. +++|+||+|++||+++|+||||||||||+++|+|+. . | ++|+ .+++...
T Consensus 4 ~~l~~~~l~~~~~~--~~--~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 4 PILQVSDLSVYYNK--KK--ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNIYS 76 (252)
T ss_pred ceEEEEeeEEEECC--ee--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEECcC
Confidence 47999999999986 33 559999999999999999999999999999999984 3 5 4898 4444211
Q ss_pred --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G 212 (255)
...+++ +.++.. +.. .++.+++.+.....+... ......+..+++.+++. .+..+..||+|
T Consensus 77 ~~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 152 (252)
T PRK14239 77 PRTDTVDLRKEIGM-VFQQPN-PFP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGG 152 (252)
T ss_pred cccchHhhhhcEEE-EecCCc-cCc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHH
Confidence 112444 333322 111 356566554333223211 11123345567766652 35677899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 161
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.97 E-value=8.7e-31 Score=221.52 Aligned_cols=162 Identities=22% Similarity=0.271 Sum_probs=122.6
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC----CCeE
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----PDVA 152 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~----~~~g 152 (255)
|+++|+++.|++ +. +++|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++.... ...+
T Consensus 1 l~l~~v~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK--QT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG 73 (223)
T ss_pred CEEEeEEEEECC--EE--EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence 468999999986 33 5599999999999999999999999999999999998 99998 44443211 1233
Q ss_pred EEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEE
Q 025293 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 153 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~il 230 (255)
+ +..+.. .. ..+++.++........+ .....+..+++.+++. .+..+..||+||+||+++|++++.+|+++
T Consensus 74 ~-~~q~~~-~~-~~~t~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 74 S-LIESPP-LY-ENLTARENLKVHTTLLG----LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred E-EcCCCC-cc-ccCCHHHHHHHHHHHcC----CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3 322221 11 12455555543332222 1234567788888876 35667899999999999999999999999
Q ss_pred EEcCCCCCCChhHHHHHHHHHHh
Q 025293 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 llDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+||||++||+.+++.+.+++.+
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~ 169 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRS 169 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 162
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.8e-31 Score=224.92 Aligned_cols=168 Identities=17% Similarity=0.131 Sum_probs=122.3
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH---hcccCC--CCCc-cCCCCCC-C
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR---INKIWP--QKAS-SFDSQVK-P 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl---l~~~~p--~~G~-~~~~~~~-~ 148 (255)
++|+++|+++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+ .+ | ++|+ .+++... .
T Consensus 2 ~~l~~~~~~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWYGD--FH--ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP---ATRLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEECC--Ee--EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC---CCCCceEEEECCEeccc
Confidence 57999999999986 33 55999999999999999999999999999999997 33 3 4898 4444221 1
Q ss_pred ---------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 149 ---------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G 212 (255)
..+++ +.++.. +.. .++.+++.+.....+... ......+.++++.+++. .+..+..||+|
T Consensus 75 ~~~~~~~~~~~i~~-v~q~~~-~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14245 75 KGVQVDELRKNVGM-VFQRPN-PFP--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGG 150 (250)
T ss_pred ccccHHHHhhheEE-EecCCc-cCc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHH
Confidence 12444 333322 111 255555544332222211 11223456777777763 34667899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++|+.+|++||+||||++||+.++..+.+++.+.
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 163
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=3.9e-31 Score=248.39 Aligned_cols=168 Identities=18% Similarity=0.171 Sum_probs=125.5
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
++|+++||++.|++ +. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 3 ~~i~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPG--VK--ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCC--eE--EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 47999999999986 34 5599999999999999999999999999999999998 99999 4544211
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHHhc---C-CCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhh
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---G-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~---~-~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~l 219 (255)
...+++ +.++.. +. ..+++.+++.+..... + .........+.++++.+++.. +.++..|||||+||+++
T Consensus 76 ~~~~~i~~-v~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 152 (501)
T PRK10762 76 SQEAGIGI-IHQELN-LI-PQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEI 152 (501)
T ss_pred HHhCCEEE-EEcchh-cc-CCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHH
Confidence 123454 443322 11 1245555544322111 1 000111234567788888753 56788999999999999
Q ss_pred hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|++|+.+|++|||||||++||+..+..+.+++.+
T Consensus 153 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (501)
T PRK10762 153 AKVLSFESKVIIMDEPTDALTDTETESLFRVIRE 186 (501)
T ss_pred HHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998875
No 164
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.4e-31 Score=227.45 Aligned_cols=170 Identities=15% Similarity=0.111 Sum_probs=121.9
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC-----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~----- 147 (255)
.+|+++||++.|++ +. +|+|+||+|++||+++|+||||||||||+++|+|+++.. +|++|+ .+++...
T Consensus 12 ~~l~i~nl~~~~~~--~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISYGT--FE--AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEECC--EE--EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 57999999999986 33 559999999999999999999999999999999997410 137898 4444211
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc------CCccCCCCCcccccc
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~kqr 216 (255)
...+++ +.++.. ++. .++.+++.+.....++. .........+++.+++. .+.++..||+||+||
T Consensus 88 ~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 88 DPVEVRRRIGM-VFQQPN-PFP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred CHHHHhhceEE-EccCCc-cch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence 112444 333321 111 24555544332222221 11123345566666542 356778999999999
Q ss_pred hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 200 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL 200 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753
No 165
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=226.36 Aligned_cols=174 Identities=14% Similarity=0.145 Sum_probs=121.5
Q ss_pred cCCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC--
Q 025293 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK-- 147 (255)
Q Consensus 73 ~~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~-- 147 (255)
...++|+++|+++.|++ +. +|+|+||+|++||++||+|+||||||||+++|+|+.... .|++|+ .+++...
T Consensus 17 ~~~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 17 AKEHILEVKDLSIYYGE--KR--AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CCCceEEEEEEEEEeCC--ce--eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 34468999999999986 33 559999999999999999999999999999999985200 147898 4443211
Q ss_pred --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G 212 (255)
....++ +.++.. .+. .++.++........+... ........+.++.+++. .+.++..||+|
T Consensus 93 ~~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 168 (268)
T PRK14248 93 SNINVVNLRREIGM-VFQKPN-PFP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGG 168 (268)
T ss_pred ccccHHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHH
Confidence 112444 333322 111 244444433222111111 11112345566666552 34678899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++|+.+|++||+||||++||+.++..+.+++.+.
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 210 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL 210 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 166
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.6e-31 Score=228.94 Aligned_cols=172 Identities=13% Similarity=0.142 Sum_probs=126.2
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
.+|+++||++.|++.. ...+++|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 3 ~~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 3 KILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWN 78 (277)
T ss_pred ceEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHH
Confidence 3799999999997421 1125699999999999999999999999999999999998 99999 4544321
Q ss_pred -CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 -~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
...+|+ +.++.. .+. ..++.+++.+.....+.........+..+++.+++. .+.++..||+||+||+++|++|
T Consensus 79 ~~~~i~~-v~q~~~~~~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL 155 (277)
T PRK13642 79 LRRKIGM-VFQNPDNQFV--GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGII 155 (277)
T ss_pred HhcceEE-EEECHHHhhc--cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 123455 444321 111 145666654433222221111123345677777664 4567889999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|++||+||||++||+.++..+.++|.+.
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 186 (277)
T PRK13642 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998653
No 167
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.97 E-value=8.1e-31 Score=226.96 Aligned_cols=169 Identities=16% Similarity=0.144 Sum_probs=123.4
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC---Cc-cCCCCCC-C--
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQVK-P-- 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~---G~-~~~~~~~-~-- 148 (255)
++|+++||++.|++ +. +++++||+|.+||+++|+||||||||||+++|+|+++ |+. |+ .+++... .
T Consensus 3 ~~l~~~nl~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 3 TIIRVEKLAKTFNQ--HQ--ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred cEEEEeeEEEEeCC--eE--EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence 58999999999986 34 5599999999999999999999999999999999997 764 77 4444221 1
Q ss_pred ----------CCeEEEEecCCCCCCCccCCcccChHHHHHh--------cCCCCCccHHHHHHHHHhhccc--CCccCCC
Q 025293 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS 208 (255)
Q Consensus 149 ----------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~ 208 (255)
...++ +..+...+ ..+++.+++.+.... .+.........+.++++.+++. .+..+..
T Consensus 76 ~~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (262)
T PRK09984 76 RLARDIRKSRANTGY-IFQQFNLV--NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST 152 (262)
T ss_pred ccchhHHHHHhheEE-Eccccccc--cCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccc
Confidence 12344 33332211 124555544332110 0001111223456788888775 3577889
Q ss_pred CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||+||+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 198 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998753
No 168
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=6.2e-31 Score=217.19 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=112.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----------CCCeEEEEecCCC-CCC
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----------PPDVATVLPMDGF-HLY 163 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----------~~~~g~~i~~~~~-~~~ 163 (255)
+++++||+|.+||++||+||||||||||+++|+|+++ |++|+ .+++... ...+++ +.++.. ...
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~-~~q~~~~~~~ 82 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGL-VFQDPDDQLF 82 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEE-EecChhhccc
Confidence 5599999999999999999999999999999999998 99998 4444211 112344 333321 111
Q ss_pred CccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~ 241 (255)
. .++.+++.+.....+.........+..+++.+++. .+.++..||+||+||+++|++|+.+|+++|+||||++||+
T Consensus 83 ~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 83 A--ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred c--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 1 35555554432222221111123456777777765 4667889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 025293 242 GVWKDVSSMFDE 253 (255)
Q Consensus 242 ~~~~~l~~ll~~ 253 (255)
.+++.+.++|.+
T Consensus 161 ~~~~~~~~~l~~ 172 (190)
T TIGR01166 161 AGREQMLAILRR 172 (190)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 169
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=226.44 Aligned_cols=173 Identities=14% Similarity=0.092 Sum_probs=124.6
Q ss_pred CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC---
Q 025293 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK--- 147 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~--- 147 (255)
+..+|+++||++.|++ +. +|+|+||+|.+||++||+|+||||||||+++|+|+++.. .|++|+ .+++...
T Consensus 17 ~~~~l~~~nl~~~~~~--~~--il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 17 EEIALSTKDLHVYYGK--KE--AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CCeEEEEeeEEEEECC--ee--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 3458999999999976 34 559999999999999999999999999999999998400 037898 4444221
Q ss_pred -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCccc
Q 025293 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (255)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~ 213 (255)
...+++ +..+.. +.. .++.+++.+.....+... ......+.++++.+++. .+.++..||+||
T Consensus 93 ~~~~~~~~~~i~~-v~q~~~-~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 93 EINVYEMRKHIGM-VFQRPN-PFA--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQ 168 (267)
T ss_pred cCChHHHhcceEE-EecCCc-ccc--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHH
Confidence 112444 333322 211 255565554332222211 11123345667777653 356788999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+++|++++.+|++||+||||++||+.++..+.+++.+.
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 209 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL 209 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 170
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=224.02 Aligned_cols=169 Identities=14% Similarity=0.153 Sum_probs=120.8
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCC-CC
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQ-VK 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~-~~ 147 (255)
|++|+++|+++.|++ +. +++|+||+|++||+++|+||||||||||+++|+|+++ | ++|+ .+++. +.
T Consensus 1 ~~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 1 MNKFNIENLDLFYGE--NQ--ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred CCeEEEeccEEEECC--ee--eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence 457999999999986 34 5599999999999999999999999999999999986 5 4787 44432 11
Q ss_pred --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~------~~~~~~~lS~G 212 (255)
...+++ +..+.. .+. .++.+++.+.....+.... .....+.++++.+++. .+.++..||+|
T Consensus 74 ~~~~~~~~~~~i~~-~~q~~~-~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 149 (249)
T PRK14253 74 GNIDVADLRIKVGM-VFQKPN-PFP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGG 149 (249)
T ss_pred cccchHHHHhheeE-EecCCC-cCc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHH
Confidence 112444 333322 111 3554554433222222111 1112334556666542 34567899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++++.+|++||+||||++||+.++..+.+++.+.
T Consensus 150 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 191 (249)
T PRK14253 150 QQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL 191 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 171
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.8e-31 Score=248.04 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=125.9
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC--CCCc-cCCCCCC----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p--~~G~-~~~~~~~---- 147 (255)
+++|+++||++.|++ +. +++|+||+|++||+++|+||||||||||+|+|+|+++ | ++|+ .+++...
T Consensus 3 ~~~l~~~nl~~~~~~--~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 3 EYLLEMKNITKTFGG--VK--ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASN 75 (506)
T ss_pred CceEEEeeeEEEeCC--eE--eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCC
Confidence 358999999999986 33 5599999999999999999999999999999999996 6 7998 4444221
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhc--C-CCCCccHHHHHHHHHhhccc--CCccCCCCCcccccch
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv 217 (255)
...+|+ +.++.. ++ ..+++.+++.+..... + .........+.++++.+++. .+.++..||||||||+
T Consensus 76 ~~~~~~~~i~~-v~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv 152 (506)
T PRK13549 76 IRDTERAGIAI-IHQELA-LV-KELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLV 152 (506)
T ss_pred HHHHHHCCeEE-EEeccc-cC-CCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 123555 443322 11 1245555544322111 1 11111123456788888875 3677889999999999
Q ss_pred hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|++|+.+|++|||||||++||+..+..+.++|.+
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999865
No 172
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=3.8e-31 Score=211.11 Aligned_cols=165 Identities=16% Similarity=0.168 Sum_probs=120.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCC--
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD-- 150 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~-- 150 (255)
||.+++|.+.|+... -.++++|+.||+++|+|||||||||||++|+|+.. |.+|+ .+++... .|.
T Consensus 1 ~l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER 71 (231)
T ss_pred CccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence 467889999998733 56789999999999999999999999999999998 99998 4444321 111
Q ss_pred -eEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293 151 -VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 151 -~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
+.. +++.+..+ ..+++.+|+..... =++ -...+...+..++..+++. .++.+.+|||||||||++||+|+.+
T Consensus 72 PVSm-lFQEnNLF--aHLtV~qNigLGl~-P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~ 147 (231)
T COG3840 72 PVSM-LFQENNLF--AHLTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVRE 147 (231)
T ss_pred Chhh-hhhccccc--hhhhhhhhhcccCC-cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhcc
Confidence 111 22222111 12455443322110 001 0122345567788888876 4677889999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
-+||+|||||+.|||.-+.++..++...
T Consensus 148 ~PilLLDEPFsALdP~LR~eMl~Lv~~l 175 (231)
T COG3840 148 QPILLLDEPFSALDPALRAEMLALVSQL 175 (231)
T ss_pred CCeEEecCchhhcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999988654
No 173
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.2e-30 Score=221.45 Aligned_cols=146 Identities=16% Similarity=0.234 Sum_probs=120.1
Q ss_pred CCeEEecCchheehhhhc-----ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCC
Q 025293 75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~-----~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~ 149 (255)
+.+++++||+|.|..... .+.+++||||+|++||++||+|+||||||||-|+|+|+++ |++|
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G---------- 68 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSG---------- 68 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCc----------
Confidence 468999999999965211 2568899999999999999999999999999999999996 6666
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccC
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
. |.+.|.++.. +. .......+.++++.+++. ..+++++|||||+||+.|||||+.+
T Consensus 69 ---~-i~f~g~~i~~--~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 69 ---E-ILFEGKDITK--LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred ---e-EEEcCcchhh--cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence 3 5556654321 11 112234577888888876 4689999999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++++|||++.||...+.++.+++.+.
T Consensus 128 P~liV~DEpvSaLDvSiqaqIlnLL~dl 155 (268)
T COG4608 128 PKLIVADEPVSALDVSVQAQILNLLKDL 155 (268)
T ss_pred CcEEEecCchhhcchhHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 174
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=223.78 Aligned_cols=172 Identities=14% Similarity=0.112 Sum_probs=122.1
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCCc-cCCCCCC----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~--~~p~~G~-~~~~~~~---- 147 (255)
|..|+++||++.|++ +. +++|+||+|++||+++|+||||||||||+++|+|+.+. ..|++|+ .+++...
T Consensus 1 ~~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 1 MGKISVKDLDLFYGD--FQ--ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred CCeEEEEEEEEEECC--ce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 346899999999986 33 55999999999999999999999999999999998740 0016898 4444221
Q ss_pred ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k 214 (255)
...+++ +..+.. ... .++.++..+.....+... ........++++.+++. .+.++..||+||+
T Consensus 77 ~~~~~~~~~i~~-~~q~~~-~~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 77 IDVNQLRKRVGM-VFQQPN-PFP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred cchHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHH
Confidence 112444 333321 111 355555544333222211 11123345566666542 3567889999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|++||+||||++||+.++..+.+++.+.
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL 192 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988653
No 175
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.4e-30 Score=216.11 Aligned_cols=161 Identities=13% Similarity=0.085 Sum_probs=118.4
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C---CCe
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P---PDV 151 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~---~~~ 151 (255)
+|+++|+++.|++ +.+ ++ +||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++... . ...
T Consensus 1 ~l~~~~l~~~~~~--~~l--~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 1 MLSLHQLQFNIEQ--KNL--FD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred CeEEEEeeEEECC--cEE--EE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence 4789999999975 332 35 999999999999999999999999999999998 99998 4444221 1 112
Q ss_pred EEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcE
Q 025293 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~i 229 (255)
++ +....... ...++.+++.+.....+ .......+++.+++. .+..+..||+||+||+++|++++.+|++
T Consensus 73 ~~-~~~~~~~~--~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 73 TY-IGHNLGLK--LEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred Ee-ccCCcCCC--ccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 32 22211111 11355555543322211 123455666777664 3567789999999999999999999999
Q ss_pred EEEcCCCCCCChhHHHHHHHHHHh
Q 025293 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 230 lllDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|+||||++||+..++.+.+++.+
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~~ 168 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIVM 168 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999998863
No 176
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.4e-30 Score=228.04 Aligned_cols=172 Identities=13% Similarity=0.122 Sum_probs=124.8
Q ss_pred CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC---
Q 025293 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK--- 147 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~--- 147 (255)
+.++|+++||++.|++ +. +|+|+||+|.+||+++|+||||||||||+++|+|+++.. .|++|+ .+++...
T Consensus 36 ~~~~l~i~~l~~~~~~--~~--il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~ 111 (285)
T PRK14254 36 GETVIEARDLNVFYGD--EQ--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111 (285)
T ss_pred CCceEEEEEEEEEECC--Ee--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 3468999999999976 33 559999999999999999999999999999999998400 037898 4443211
Q ss_pred -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k 214 (255)
....++ +.++.. ++. .++.+++.+.....+... .....+..+++.+++. .+.++..||+||+
T Consensus 112 ~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 112 DVDPVALRRRIGM-VFQKPN-PFP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQ 186 (285)
T ss_pred ccchHhhhccEEE-EecCCc-cCc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHH
Confidence 112344 333322 111 245555544333222221 1223456677777653 3567889999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~ 226 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEEL 226 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 177
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.1e-30 Score=222.24 Aligned_cols=166 Identities=16% Similarity=0.142 Sum_probs=123.1
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCC
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~ 150 (255)
|+++||++.|++ +. +++|+||+|.+|++++|+|+||||||||+++|+|+++ |+.|+ .+++... ...
T Consensus 1 l~~~~l~~~~~~--~~--il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGG--FV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP 73 (232)
T ss_pred CEEEeEEEEeCC--ee--eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence 468999999986 34 5599999999999999999999999999999999998 99998 4444211 123
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
.+. +..+...+. .+++.++..+.....+.........+..+++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 74 i~~-~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (232)
T cd03300 74 VNT-VFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150 (232)
T ss_pred eEE-EecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 444 333322111 235555544333222221111223456677777775 356678999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|+||||++||+.+++.+.+++.+
T Consensus 151 llllDEP~~gLD~~~~~~l~~~l~~ 175 (232)
T cd03300 151 VLLLDEPLGALDLKLRKDMQLELKR 175 (232)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 178
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=7.7e-31 Score=222.17 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=119.8
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEe
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP 156 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~ 156 (255)
+.++++++.|++ +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++.... . ..
T Consensus 23 l~~~~~~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~----~-~~ 90 (224)
T cd03220 23 LGILGRKGEVGE--FW--ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSS----L-LG 90 (224)
T ss_pred hhhhhhhhhcCC--eE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEch----h-hc
Confidence 788999999988 44 5599999999999999999999999999999999997 89997 34432110 0 00
Q ss_pred cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe 234 (255)
. +..+ ...+++.++........+............+++.+++. .+..+..||+||+||+++|++++.+|+++|+||
T Consensus 91 ~-~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 91 L-GGGF-NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred c-cccC-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 0111 11245556555443333221111122345667776665 356788999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHh
Q 025293 235 NYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 235 p~~~LD~~~~~~l~~ll~~ 253 (255)
||++||+.++..+.+++.+
T Consensus 169 P~~gLD~~~~~~~~~~l~~ 187 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRE 187 (224)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9999999999999998875
No 179
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.97 E-value=6.8e-31 Score=221.81 Aligned_cols=171 Identities=19% Similarity=0.151 Sum_probs=124.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
+++++|+++.|++..+...+++|+||++++|++++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence 47899999999742111225699999999999999999999999999999999998 99998 4544321
Q ss_pred ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC-CCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~ 221 (255)
...+++ +..+.. ++ ...++.++..+...... .........+.++++.+++. .+..+..||+||+||+++|+
T Consensus 78 ~~~~~~i~~-~~q~~~-~~-~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 78 VQLRRNIGY-IFQAHN-LL-GFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred HHHHhheEE-EcCChh-hc-CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHH
Confidence 112444 332221 11 12455555544332221 11111123456788888875 35677899999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+|+++|+|||+++||+.+++.+.++|.+
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 186 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQK 186 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 180
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=223.33 Aligned_cols=169 Identities=15% Similarity=0.168 Sum_probs=123.2
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
+++++|+++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|++....|++|+ .+++...
T Consensus 2 ~~~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQ--ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECC--Ee--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 5789999999986 33 559999999999999999999999999999999997300158998 4444221
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC--CccHHHHHHHHHhhccc------CCccCCCCCcccccchhh
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~kqrv~l 219 (255)
...+++ +..+.. .+. .++.+++.+.....+... ......+.++++.+++. .+.++..||+||+||+++
T Consensus 78 ~~~i~~-~~q~~~-l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 78 RKNVGM-VFQQPN-VFV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred hhhEEE-EecCCc-ccc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence 123454 443322 221 355555544322222211 11223456778888774 345678999999999999
Q ss_pred hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|++++.+|+++|+||||++||+.++..+.++|.+
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 187 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKE 187 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 181
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.97 E-value=9.9e-31 Score=225.67 Aligned_cols=167 Identities=14% Similarity=0.114 Sum_probs=122.9
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
|+++|+++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++... .
T Consensus 2 l~~~~l~~~~~~--~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGG--RL--IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECC--EE--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence 578999999986 34 5599999999999999999999999999999999998 99998 4544221 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHH-h---cCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
...++ +..... .. ...++.+++.+... . ...........+.++++.+++. .+.++..||+||+||+++|++
T Consensus 75 ~~i~~-~~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 75 RRVAL-VEQDSD-TA-VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred hheEE-ecccCc-cC-CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 12343 333221 11 11355555443211 1 1111111223456778877775 366788999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++.+|+++|+||||++||+.++..+.++|.+.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183 (256)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998753
No 182
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.5e-31 Score=227.23 Aligned_cols=168 Identities=13% Similarity=0.175 Sum_probs=122.9
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------ 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------ 147 (255)
.+|+++||++.|++ +. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+ .+++. +.
T Consensus 6 ~~l~i~~l~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YT--VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred cEEEEEEEEEEECC--EE--EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHHH
Confidence 57999999999986 33 5599999999999999999999999999999999998 99998 44442 11
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHH-HhcCC---CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la 220 (255)
...+++ +..+...+. ..++.++..... ..... ........+.++++.+++. .+.++..||+||+||+++|
T Consensus 79 ~~~~i~~-v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 79 VARRIGL-LAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred HhhheEE-eeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence 112444 333322111 134433332210 00000 0011123456777777775 4678889999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++++.+|+++|+||||++||+.++..+.++|.+
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~ 188 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998865
No 183
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.4e-31 Score=216.06 Aligned_cols=144 Identities=23% Similarity=0.321 Sum_probs=105.0
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
|+++|+++.|++ ++ +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ +.+
T Consensus 1 i~~~~l~~~~~~--~~--~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~--------------i~~ 59 (178)
T cd03229 1 LELKNVSKRYGQ--KT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGS--------------ILI 59 (178)
T ss_pred CEEEEEEEEECC--eE--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceE--------------EEE
Confidence 468999999976 34 4599999999999999999999999999999999986 66663 334
Q ss_pred CCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~ 236 (255)
++..... .+ ..........++ ++........++.+++.+. ||+||+||+++|++++.+|+++|+||||
T Consensus 60 ~g~~~~~--~~--~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 60 DGEDLTD--LE--DELPPLRRRIGMVFQDFALFPHLTVLENIALG-------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCEEccc--cc--hhHHHHhhcEEEEecCCccCCCCCHHHheeec-------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 4432210 00 000111122222 2222111123455555433 9999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHh
Q 025293 237 LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~ 253 (255)
++||+.++..+.+++.+
T Consensus 129 ~~LD~~~~~~l~~~l~~ 145 (178)
T cd03229 129 SALDPITRREVRALLKS 145 (178)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999999999875
No 184
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=250.39 Aligned_cols=175 Identities=16% Similarity=0.191 Sum_probs=130.0
Q ss_pred CCeEEecCchheehhhh-------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-
Q 025293 75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ- 145 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~-------~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~- 145 (255)
.++|+++||++.|+... ....+++|+||+|++||++||+|+||||||||+|+|+|+++ |++|+ .+++.
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~ 387 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQR 387 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEE
Confidence 36899999999996210 01225699999999999999999999999999999999998 99999 45543
Q ss_pred CC----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc---CCccCCCCCc
Q 025293 146 VK----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (255)
Q Consensus 146 ~~----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~lS~ 211 (255)
+. ...+++ +.++.+......+++.+++.+.....+.. .......+.++++.+++. .+.++..|||
T Consensus 388 i~~~~~~~~~~~~~~i~~-v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSg 466 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQF-IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSG 466 (623)
T ss_pred CCcCCHHHHHHhcCCeEE-EecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCH
Confidence 11 123555 55543211122245655554433222321 111224567788888884 4678899999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||||||+||++|+.+|++||+||||++||+..+.++.++|.+
T Consensus 467 GqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~ 508 (623)
T PRK10261 467 GQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508 (623)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999965
No 185
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5e-31 Score=219.94 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=106.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
.+.++||+|.|+.......+++++||+|++|++++|+||||||||||+++|+|+++...|++|+ +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~--------------i~ 68 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD--------------IH 68 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceE--------------EE
Confidence 5789999999975311122569999999999999999999999999999999998400023443 33
Q ss_pred cCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc----CCccCCCCCcccccchhhhhhhccCCcEEE
Q 025293 157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~----~~~~~~~lS~G~kqrv~la~~l~~~~~ill 231 (255)
+++..... . ........++ +++.......++.+++.+. .+.++..||+||+||+++|++|+.+|+++|
T Consensus 69 i~g~~~~~--~-----~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lll 141 (202)
T cd03233 69 YNGIPYKE--F-----AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLC 141 (202)
T ss_pred ECCEECcc--c-----hhhhcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 34332110 0 0000111111 1111111112233332221 456778999999999999999999999999
Q ss_pred EcCCCCCCChhHHHHHHHHHHh
Q 025293 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||||++||+..++.+.+++.+
T Consensus 142 lDEPt~~LD~~~~~~~~~~l~~ 163 (202)
T cd03233 142 WDNSTRGLDSSTALEILKCIRT 163 (202)
T ss_pred EcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 186
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.8e-30 Score=222.31 Aligned_cols=172 Identities=12% Similarity=0.101 Sum_probs=121.9
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCCc-cCCCCCC-----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~--~~~p~~G~-~~~~~~~----- 147 (255)
..|+++|+++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+++ ...|++|+ .+++...
T Consensus 3 ~~l~~~nl~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NH--AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred cEEEEEEEEEEeCC--ee--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 46899999999986 33 5599999999999999999999999999999999973 00125888 4444211
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc------CCccCCCCCccccc
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~kq 215 (255)
...+++ +..+...+. ..++.+++.......+.. .......+.++++.+++. .+..+..||+||+|
T Consensus 79 ~~~~~~~~i~~-~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 79 DPVSIRRRVGM-VFQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ 155 (252)
T ss_pred ChHHhhccEEE-EecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence 112444 333322111 235555554322222211 111123355667777753 24567899999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 194 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL 194 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 187
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.4e-30 Score=218.85 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=117.6
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (255)
+++ ||+|.|++. . + |+||+|++ |+++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~~~-~l~~~~~~~--~--~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 70 (214)
T cd03297 2 LCV-DIEKRLPDF--T--L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINL 70 (214)
T ss_pred cee-eeeEecCCe--e--e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhh
Confidence 445 999999873 2 3 99999999 9999999999999999999999998 99998 4444211
Q ss_pred ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhh
Q 025293 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~ 222 (255)
....++ +..... ++ ..+++.++..+..... ........+.++++.+++.. +.++..||+||+||+++|++
T Consensus 71 ~~~~~~i~~-~~q~~~-~~-~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 145 (214)
T cd03297 71 PPQQRKIGL-VFQQYA-LF-PHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARA 145 (214)
T ss_pred hhHhhcEEE-EecCCc-cC-CCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHH
Confidence 112444 333322 11 1235545443322111 11112234567888887753 56788999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|+++|+||||++||+.+++.+.+++.+
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQ 176 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
No 188
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.9e-30 Score=222.12 Aligned_cols=167 Identities=14% Similarity=0.149 Sum_probs=120.3
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CCc-cCCCCCC--
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK-- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~-----~G~-~~~~~~~-- 147 (255)
++|+++||++.|++ +. +++|+||+|.+|+++||+||||||||||+++|+|+++ |+ +|+ .+++...
T Consensus 3 ~~l~~~~l~~~~~~--~~--il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 3 PKIKIRGVNFFYHK--HQ--VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred ceEEEEEEEEEECC--ee--EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence 57899999999986 33 5599999999999999999999999999999999997 76 587 3443211
Q ss_pred --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G 212 (255)
...+++ +..+.. ... .++.+++.+.....+... ......+..+++.+++. .+..+..||+|
T Consensus 76 ~~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 151 (251)
T PRK14249 76 PNLDVVNLRKRVGM-VFQQPN-PFP--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG 151 (251)
T ss_pred cccChHHhhceEEE-EecCCc-cCc--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHH
Confidence 122444 333322 111 245555544332222211 11112334455555542 35678899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus 152 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 192 (251)
T PRK14249 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE 192 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998865
No 189
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=1.2e-30 Score=245.52 Aligned_cols=165 Identities=18% Similarity=0.157 Sum_probs=124.7
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P---- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~---- 148 (255)
+++|+++||++.|++ +. +|+|+||+|++|+++||+||||||||||||+|+|+++ |++|+ .+++... .
T Consensus 9 ~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 81 (510)
T PRK15439 9 PPLLCARSISKQYSG--VE--VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTPA 81 (510)
T ss_pred CceEEEEeEEEEeCC--ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 458999999999986 33 5599999999999999999999999999999999998 99999 4444211 1
Q ss_pred ----CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
..+|+ +.++.. +. ..+++.+++.+... ........+.++++.+++. .+.++..||||||||+++|++
T Consensus 82 ~~~~~~i~~-v~q~~~-~~-~~~tv~e~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 154 (510)
T PRK15439 82 KAHQLGIYL-VPQEPL-LF-PNLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRG 154 (510)
T ss_pred HHHhCCEEE-EeccCc-cC-CCCcHHHHhhcccc----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHH
Confidence 12454 343322 11 12344443322110 1111223456788888875 357788999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|++||+||||++||+.++..+.++|.+
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRE 185 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 190
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=1.7e-30 Score=245.51 Aligned_cols=174 Identities=16% Similarity=0.194 Sum_probs=124.5
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC--
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~-- 147 (255)
++|+++||++.|++......+++|+||+|.+||++||+||||||||||+|+|+|+++ | ++|+ .+++...
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEeccc
Confidence 579999999999631011125699999999999999999999999999999999996 5 6898 4444211
Q ss_pred ----------CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhcccC-----CccCCCCCc
Q 025293 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH 211 (255)
Q Consensus 148 ----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~lS~ 211 (255)
...+|+ +.++.........++.++....... .+.........+.++++.+++.. +.++..|||
T Consensus 81 ~~~~~~~~~~~~~ig~-v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 81 ASEQTLRGVRGNKIAM-IFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred CCHHHHHHHhcCceEE-EecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 023555 4444221111112333333222111 12222222345677888888852 667899999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+|||+||++|+.+|++||+||||++||+..+..+.+++.+
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 201 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE 201 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
No 191
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-30 Score=246.03 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=124.7
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----- 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----- 148 (255)
++|+++|+++.|++ +. +++|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++... .
T Consensus 4 ~~l~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSFGP--VH--ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEcCC--eE--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence 57999999999986 34 5599999999999999999999999999999999998 99999 4444221 1
Q ss_pred ---CCeEEEEecCCCCCCCccCCcccChHHHHH----hcCCC---CCccHHHHHHHHHhhccc--CCccCCCCCcccccc
Q 025293 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAP---WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP 216 (255)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~----~~~~~---~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqr 216 (255)
..+|+ +.++.... ..+++.+++.+... ..+.. .......+.++++.+++. .+.++..|||||+||
T Consensus 77 ~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr 153 (510)
T PRK09700 77 AAQLGIGI-IYQELSVI--DELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM 153 (510)
T ss_pred HHHCCeEE-Eeeccccc--CCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence 12454 33332211 12354444432111 01110 001123456778888875 367788999999999
Q ss_pred hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 154 v~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 191 (510)
T PRK09700 154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL 191 (510)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753
No 192
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.8e-30 Score=222.20 Aligned_cols=167 Identities=13% Similarity=0.141 Sum_probs=118.7
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CCc-cCCCCCC---
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK--- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~-----~G~-~~~~~~~--- 147 (255)
+|+++||++.|++ +. +++|+||+|++||+++|+|+||||||||+|+|+|+++ |+ +|+ .+++...
T Consensus 4 ~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQ--AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEECC--EE--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence 7899999999986 34 5599999999999999999999999999999999986 64 788 4444211
Q ss_pred -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhcc------cCCccCCCCCccc
Q 025293 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (255)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lS~G~ 213 (255)
....++ +..+...+ ..+++.+++.......+.... ........+++.+++ ..+.++..||+||
T Consensus 77 ~~~~~~~~~~i~~-~~q~~~~~--~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 153 (252)
T PRK14272 77 RVDPVAMRRRVGM-VFQKPNPF--PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ 153 (252)
T ss_pred ccCHHHhhceeEE-EeccCccC--cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHH
Confidence 112444 33332211 124555555433222221111 111223344444433 1356788999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++++.+|++||+||||++||+.++..+.+++.+
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD 193 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 193
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=1.1e-30 Score=212.66 Aligned_cols=140 Identities=17% Similarity=0.227 Sum_probs=104.9
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
|+++|+++.|++..+. +++++||+|++||+++|+||||||||||+++|+|+++ |++|+ +.+
T Consensus 1 i~~~~l~~~~~~~~~~--~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~--------------i~~ 61 (173)
T cd03246 1 LEVENVSFRYPGAEPP--VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGR--------------VRL 61 (173)
T ss_pred CEEEEEEEEcCCCCCc--ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCe--------------EEE
Confidence 4689999999752222 5699999999999999999999999999999999996 66663 344
Q ss_pred CCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~ 236 (255)
++..... .+ ........++ +++..... .++.+++ ||+||+||+++|++++.+|+++|+||||
T Consensus 62 ~g~~~~~--~~----~~~~~~~i~~~~q~~~~~~-~tv~~~l----------LS~G~~qrv~la~al~~~p~~lllDEPt 124 (173)
T cd03246 62 DGADISQ--WD----PNELGDHVGYLPQDDELFS-GSIAENI----------LSGGQRQRLGLARALYGNPRILVLDEPN 124 (173)
T ss_pred CCEEccc--CC----HHHHHhheEEECCCCcccc-CcHHHHC----------cCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 4432211 01 1111222333 33322222 2555555 9999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHh
Q 025293 237 LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~ 253 (255)
++||+..+..+.+++.+
T Consensus 125 ~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 125 SHLDVEGERALNQAIAA 141 (173)
T ss_pred cccCHHHHHHHHHHHHH
Confidence 99999999999999865
No 194
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.7e-30 Score=222.27 Aligned_cols=171 Identities=16% Similarity=0.148 Sum_probs=122.4
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCCc-cCCCCCC-----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~--~~~p~~G~-~~~~~~~----- 147 (255)
++|+++|+++.|+. ++ +++|+||+|++||+++|+|+||||||||+++|+|+++ ...|++|+ .+++...
T Consensus 3 ~~l~~~~l~~~~~~--~~--~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 3 NIISAKDVHLSYGN--YE--ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred ceEEEEeeEEEECC--ee--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 47899999999976 34 5599999999999999999999999999999999984 00126888 4444211
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCccccc
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~kq 215 (255)
...+++ +..+.. ... .++.++..+.....+... ......+..+++.+++. .+..+..||+||+|
T Consensus 79 ~~~~~~~~i~~-~~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 79 DLVELRKEVGM-VFQQPT-PFP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred hHHHhhccEEE-EecCCc-cCC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence 112343 333322 221 355555544332222211 11122345667766652 35677899999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|+++|+||||++||+.++..+.+++.+.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 193 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 195
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.9e-30 Score=221.32 Aligned_cols=165 Identities=13% Similarity=0.153 Sum_probs=123.3
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCC
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~ 150 (255)
|+++|+++.|++ + +++|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+ .+++... ...
T Consensus 1 l~~~~l~~~~~~--~---~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE--F---KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD 72 (235)
T ss_pred CeeEeEEEEeCC--c---eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence 468899999975 2 4699999999999999999999999999999999998 99998 4444211 123
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
++. +..+...+ ..+++.+++.+.....+.........+.++++.+++. .+.++..||+||+||+++|++++.+|+
T Consensus 73 i~~-~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 149 (235)
T cd03299 73 ISY-VPQNYALF--PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149 (235)
T ss_pred EEE-EeecCccC--CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence 454 33332221 1245555554433222221111223456778887775 456778999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|+||||++||+.+++.+.+++.+
T Consensus 150 llllDEPt~gLD~~~~~~l~~~l~~ 174 (235)
T cd03299 150 ILLLDEPFSALDVRTKEKLREELKK 174 (235)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 196
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-30 Score=233.75 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=120.6
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
||++ ||+|.|++ + . .|+||+|++||+++|+|||||||||||++|+|+++ |++|+ .+++...
T Consensus 1 ~l~~-~l~k~~~~--~---~-~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 1 MLEL-NFKQQLGD--L---C-LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred CeEE-EEEEEeCC--E---E-EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 4778 99999986 2 1 38999999999999999999999999999999998 99998 4444211
Q ss_pred ----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~ 221 (255)
...+|+ +.++.. ++ ..+++.+++.+... ......+.++++.+++. .+.++..|||||+||+++|+
T Consensus 71 ~~~~~~~i~~-v~q~~~-l~-~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalar 141 (352)
T PRK11144 71 LPPEKRRIGY-VFQDAR-LF-PHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGR 141 (352)
T ss_pred cchhhCCEEE-EcCCcc-cC-CCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence 123444 333322 21 12455555443211 11234567788888876 36778899999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|+.+|++|||||||++||+..+..+.++|.+
T Consensus 142 aL~~~p~llLLDEPts~LD~~~~~~l~~~L~~ 173 (352)
T PRK11144 142 ALLTAPELLLMDEPLASLDLPRKRELLPYLER 173 (352)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 197
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=225.89 Aligned_cols=171 Identities=15% Similarity=0.057 Sum_probs=119.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----CCC
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD 150 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----~~~ 150 (255)
+|+++||++.|++. +. +++|+||+|++|+++||+||||||||||+++|+|+++ |++|+ .+++... ...
T Consensus 6 ~l~~~~l~~~~~~~-~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HT--ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKNL 79 (272)
T ss_pred eEEEEeEEEEecCC-cE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccce
Confidence 68999999999631 33 5599999999999999999999999999999999998 99998 4444321 112
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHH-HhcCC---CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
+++ +..+............++..... ...+. ...........+++.+++. .+.++..||+||+||+++|++|+
T Consensus 80 i~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 80 VAY-VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred EEE-eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 444 33321110000011122211100 00011 1111123345677777775 46778899999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|++||+||||++||+.+++.+.++|.+.
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~ 188 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLREL 188 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998653
No 198
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.1e-30 Score=222.97 Aligned_cols=169 Identities=15% Similarity=0.154 Sum_probs=123.2
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (255)
+.+|+++||++.|++ +. +++|+||+|++||+++|+|+||||||||+|+|+|+++ | ++|+ .+++...
T Consensus 5 ~~~l~~~~l~~~~~~--~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 5 IPAIKVKDLSFYYNT--SK--AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred cceEEEEEEEEEECC--eE--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEecc
Confidence 458999999999986 33 5599999999999999999999999999999999985 4 4788 4443211
Q ss_pred ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc------CCccCCCCCc
Q 025293 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (255)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~ 211 (255)
...+++ +..+.. .+. .++.+++.......+. +.........++++.+++. .+.++..||+
T Consensus 78 ~~~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 153 (259)
T PRK14260 78 DPRININRLRRQIGM-VFQRPN-PFP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSG 153 (259)
T ss_pred ccccchHhhhhheEE-Eecccc-cCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence 113444 333322 111 3555655443222221 1111123345667766652 4567789999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 196 (259)
T PRK14260 154 GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL 196 (259)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998753
No 199
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.1e-30 Score=223.58 Aligned_cols=170 Identities=14% Similarity=0.100 Sum_probs=118.6
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCCc-cCCCCCC-----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~--~~p~~G~-~~~~~~~----- 147 (255)
++|+++||++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|++.. ..|++|+ .+++...
T Consensus 9 ~~l~i~~v~~~~~~--~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 9 TVLRTENLNVYYGS--FL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred eEEEEeeeEEEECC--EE--EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 47999999999986 33 55999999999999999999999999999999998740 0126888 4444211
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc------CCccCCCCCcccccc
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~kqr 216 (255)
...+++ +.++.. +.. .++.+++.+.....+.. .........+++.+++. .+..+..||+||+||
T Consensus 85 ~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 85 DPVEVRRRIGM-VFQKPN-PFP--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred ChHHHhhhEEE-EccCCc-ccc--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHH
Confidence 112444 333221 111 24444443322221211 11112234445555442 356778999999999
Q ss_pred hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 197 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL 197 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753
No 200
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.97 E-value=1.9e-30 Score=221.48 Aligned_cols=166 Identities=18% Similarity=0.240 Sum_probs=122.3
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCC
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~ 150 (255)
|+++|+++.|++ +. +++|+||+|.+|+++||+|+||||||||+++|+|+++ |++|+ .+++... ...
T Consensus 1 i~i~~l~~~~~~--~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGS--FQ--ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK 73 (237)
T ss_pred CEEEEEEEEECC--ee--eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence 478999999986 34 5599999999999999999999999999999999998 99998 4443211 112
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
.++ +..+.. ++ ...+..+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 74 i~~-~~q~~~-~~-~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (237)
T TIGR00968 74 IGF-VFQHYA-LF-KHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ 150 (237)
T ss_pred EEE-EecChh-hc-cCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 344 332221 11 1235555554333222221111223456777777765 356678999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|+|||+++||+.++..+.+++.+
T Consensus 151 llllDEP~~~LD~~~~~~~~~~l~~ 175 (237)
T TIGR00968 151 VLLLDEPFGALDAKVRKELRSWLRK 175 (237)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 201
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=249.59 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=122.6
Q ss_pred CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeE
Q 025293 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA 152 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g 152 (255)
+..+|+++||++.|++ +. +|+|+||+|.+|+++||+||||||||||||+|+|+++ |++|+ .++.. ..+|
T Consensus 309 ~~~~l~~~~l~~~y~~--~~--il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~ig 378 (638)
T PRK10636 309 PNPLLKMEKVSAGYGD--RI--ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IKLG 378 (638)
T ss_pred CCceEEEEeeEEEeCC--ee--eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EEEE
Confidence 3458999999999986 33 5599999999999999999999999999999999998 99998 34321 2345
Q ss_pred EEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcE
Q 025293 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 153 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~i 229 (255)
+ +.+..... ++........ ............+..+++.+++. .+.++..|||||||||++|++++.+|++
T Consensus 379 y-~~Q~~~~~----l~~~~~~~~~--~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~l 451 (638)
T PRK10636 379 Y-FAQHQLEF----LRADESPLQH--LARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNL 451 (638)
T ss_pred E-ecCcchhh----CCccchHHHH--HHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 4 33321110 1211111111 11111122234567888888884 3578899999999999999999999999
Q ss_pred EEEcCCCCCCChhHHHHHHHHHHh
Q 025293 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 230 lllDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||||||++||+.++..+.++|.+
T Consensus 452 LlLDEPt~~LD~~~~~~l~~~L~~ 475 (638)
T PRK10636 452 LLLDEPTNHLDLDMRQALTEALID 475 (638)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999865
No 202
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=2e-30 Score=243.03 Aligned_cols=167 Identities=11% Similarity=0.010 Sum_probs=119.1
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CCC-----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VKP----- 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~~----- 148 (255)
.||+++||++.|++ +. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++. ...
T Consensus 2 ~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 2 SSLQISQGTFRLSD--TK--TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFEQ 74 (490)
T ss_pred ceEEEEeEEEEcCC--ee--ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHHH
Confidence 47999999999986 33 5599999999999999999999999999999999998 99998 33332 111
Q ss_pred --CCeEEEEecCCCCCCCccCCcccC-h-HHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 149 --PDVATVLPMDGFHLYLSQLDAMED-P-KEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 --~~~g~~i~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
...|. +.+...... ++...+ . .......... ......+.++++.+++. .+.++..||||||||+++|++
T Consensus 75 ~~~~i~~-~~q~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 75 LQKLVSD-EWQRNNTDM---LSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQA 149 (490)
T ss_pred HHHHhce-eccCcchhh---cccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHH
Confidence 11233 222111000 000000 0 0001111000 11223456788888875 367789999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 181 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASL 181 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998763
No 203
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.96 E-value=2.5e-30 Score=243.95 Aligned_cols=167 Identities=16% Similarity=0.176 Sum_probs=123.4
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCCc-cCC-----------
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFD----------- 143 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p~~G~-~~~----------- 143 (255)
|+++||++.|++ +. +++|+||+|.+|+++||+||||||||||+|+|+|++ + |++|+ .++
T Consensus 1 l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDG--KE--VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECC--eE--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence 478999999976 34 559999999999999999999999999999999996 6 89998 343
Q ss_pred ------------CC-C-------C----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHH
Q 025293 144 ------------SQ-V-------K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN 193 (255)
Q Consensus 144 ------------~~-~-------~----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (255)
+. + . ...+|+ +.++...+. ..+++.+++.+.....+.........+.+
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAI-MLQRTFALY-GDDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEE-EeccccccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 10 0 0 012344 333211111 12455565554333333322222345667
Q ss_pred HHHhhcccC--CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 194 CLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 194 ~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+++.. +.++..|||||||||++|++|+.+|++|||||||++||+.++..+.++|.+
T Consensus 152 ~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 213 (520)
T TIGR03269 152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE 213 (520)
T ss_pred HHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence 888888753 567899999999999999999999999999999999999999999988865
No 204
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.7e-30 Score=211.25 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=105.2
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
|+++|+++.|++.... +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ +.+
T Consensus 1 l~~~~l~~~~~~~~~~--~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~--------------i~~ 61 (171)
T cd03228 1 IEFKNVSFSYPGRPKP--VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGE--------------ILI 61 (171)
T ss_pred CEEEEEEEEcCCCCcc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCE--------------EEE
Confidence 4689999999763113 5699999999999999999999999999999999996 66663 344
Q ss_pred CCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~ 236 (255)
++..... .. ........++ +++..... .++.+++ ||+||+||+++|++++.+|+++|+||||
T Consensus 62 ~g~~~~~--~~----~~~~~~~i~~~~~~~~~~~-~t~~e~l----------LS~G~~~rl~la~al~~~p~llllDEP~ 124 (171)
T cd03228 62 DGVDLRD--LD----LESLRKNIAYVPQDPFLFS-GTIRENI----------LSGGQRQRIAIARALLRDPPILILDEAT 124 (171)
T ss_pred CCEEhhh--cC----HHHHHhhEEEEcCCchhcc-chHHHHh----------hCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 4432210 00 1111222332 33322222 3555554 9999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhh
Q 025293 237 LFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~~ 254 (255)
++||+.++..+.+++.+.
T Consensus 125 ~gLD~~~~~~l~~~l~~~ 142 (171)
T cd03228 125 SALDPETEALILEALRAL 142 (171)
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 999999999999998753
No 205
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4e-30 Score=221.51 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=121.4
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC---CCCc-cCCCCC-C--
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQV-K-- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p---~~G~-~~~~~~-~-- 147 (255)
.++|+++|+++.|++ +. +|+|+||+|++||+++|+||||||||||+++|+|++.. .| ++|+ .+++.. .
T Consensus 4 ~~~i~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 4 EIILSTKNLNLWYGE--KH--ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL-IPGCRITGDILYNGENIMDS 78 (253)
T ss_pred cceEEEeeeEEEECC--ee--eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC-CCCCCcceEEEECCEEcccc
Confidence 458999999999986 33 55999999999999999999999999999999998630 02 4788 444321 1
Q ss_pred -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccc------CCccCCCCCccc
Q 025293 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (255)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~------~~~~~~~lS~G~ 213 (255)
...+++ +.+... ... .++.+++.+.....+.... .....+.++++.+++. .+..+..||+||
T Consensus 79 ~~~~~~~~~~i~~-~~q~~~-~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 154 (253)
T PRK14261 79 GADVVALRRKIGM-VFQRPN-PFP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQ 154 (253)
T ss_pred ccchhhhhceEEE-EecCCc-cCc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHH
Confidence 112343 333322 211 2555555543333222111 1122344566666542 356778999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus 155 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~ 195 (253)
T PRK14261 155 QQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL 195 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 206
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=9.9e-31 Score=213.02 Aligned_cols=140 Identities=21% Similarity=0.283 Sum_probs=103.9
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
++++|+++.|++ +. +++++||++.+||+++|+||||||||||+++|+|+++ |++|+ +.+
T Consensus 1 l~~~~l~~~~~~--~~--~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~--------------i~~ 59 (173)
T cd03230 1 IEVRNLSKRYGK--KT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGE--------------IKV 59 (173)
T ss_pred CEEEEEEEEECC--ee--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeE--------------EEE
Confidence 468999999976 33 5599999999999999999999999999999999986 66664 334
Q ss_pred CCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~ 236 (255)
++..... .. .......++ +++.......++.+++. ||+||+||+++|++|+.+|+++|+||||
T Consensus 60 ~g~~~~~--~~-----~~~~~~i~~~~q~~~~~~~~tv~~~~~---------LS~G~~qrv~laral~~~p~illlDEPt 123 (173)
T cd03230 60 LGKDIKK--EP-----EEVKRRIGYLPEEPSLYENLTVRENLK---------LSGGMKQRLALAQALLHDPELLILDEPT 123 (173)
T ss_pred CCEEccc--ch-----HhhhccEEEEecCCccccCCcHHHHhh---------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 4432110 00 111112222 33222111234444442 9999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhh
Q 025293 237 LFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~~ 254 (255)
++||+.++..+.++|.+.
T Consensus 124 ~~LD~~~~~~l~~~l~~~ 141 (173)
T cd03230 124 SGLDPESRREFWELLREL 141 (173)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999998753
No 207
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.4e-30 Score=223.78 Aligned_cols=175 Identities=16% Similarity=0.098 Sum_probs=121.2
Q ss_pred cccCCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC
Q 025293 71 QRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK 147 (255)
Q Consensus 71 ~~~~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~ 147 (255)
.+...++|+++||++.|++ +. +|+|+||+|++||+++|+||||||||||+++|+|++... .|++|+ .+++...
T Consensus 14 ~~~~~~~l~~~nl~~~~~~--~~--~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 14 INPDHSVFEVEGVKVFYGG--FL--ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred cCCCCceEEEeeEEEEeCC--eE--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 3445679999999999986 33 559999999999999999999999999999999997400 015787 4444211
Q ss_pred ----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc------CCccCCCCCc
Q 025293 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (255)
Q Consensus 148 ----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~ 211 (255)
...+++ +..+.. ++. .++.+++.......+... .........++.+++. .+.++..||+
T Consensus 90 ~~~~~~~~~~~~~i~~-v~q~~~-l~~--~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg 164 (274)
T PRK14265 90 YDSQINSVKLRRQVGM-VFQRPN-PFP--KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSG 164 (274)
T ss_pred ccccchhHHHhhcEEE-EccCCc-ccc--ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCH
Confidence 112343 333222 111 144444433222111111 1112234455555442 3567789999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 207 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL 207 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999753
No 208
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=3.4e-30 Score=248.09 Aligned_cols=165 Identities=16% Similarity=0.179 Sum_probs=124.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
..+|+++||++.|++ +. +|+|+||+|.+|+++||+||||||||||||+|+|+++ |++|+ .++.. ..+|+
T Consensus 317 ~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~i~y 386 (635)
T PRK11147 317 KIVFEMENVNYQIDG--KQ--LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGTK---LEVAY 386 (635)
T ss_pred CceEEEeeeEEEECC--eE--EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCC---cEEEE
Confidence 458999999999987 34 4599999999999999999999999999999999998 99998 34321 23555
Q ss_pred EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcEE
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~il 230 (255)
+.+....+ ...+++.+++..... ..........+.++++.+++. .++++..||||||||+++|++++.+|++|
T Consensus 387 -~~q~~~~l-~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lL 462 (635)
T PRK11147 387 -FDQHRAEL-DPEKTVMDNLAEGKQ--EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLL 462 (635)
T ss_pred -EeCccccc-CCCCCHHHHHHhhcc--cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 33321111 112455444432111 111011133466788888874 36788999999999999999999999999
Q ss_pred EEcCCCCCCChhHHHHHHHHHHh
Q 025293 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 llDep~~~LD~~~~~~l~~ll~~ 253 (255)
||||||++||+.++..+.+++.+
T Consensus 463 lLDEPt~~LD~~~~~~l~~~l~~ 485 (635)
T PRK11147 463 ILDEPTNDLDVETLELLEELLDS 485 (635)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998865
No 209
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.96 E-value=2.8e-30 Score=232.56 Aligned_cols=158 Identities=10% Similarity=0.095 Sum_probs=119.1
Q ss_pred CchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------------C
Q 025293 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------------P 148 (255)
Q Consensus 82 ~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------------~ 148 (255)
||+|.|++ + .+ |+||+|++||+++|+|||||||||||++|+|+++ |++|+ .+++... .
T Consensus 4 ~l~~~~~~--~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGD--F---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECC--E---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence 78999986 2 23 8999999999999999999999999999999998 99998 4444211 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
..+++ +.++.. ++ ..+++.+++.+..... ........+.++++.+++. .+.++..|||||+||+++|++|+.+
T Consensus 75 ~~i~~-v~q~~~-l~-~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 75 RRIGY-VFQEAR-LF-PHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred CCeEE-EecCCc-cC-CCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 22444 333322 21 1256666655432211 1111223467788888876 3677889999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|++|||||||++||+..+..+.++|.+
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~ 176 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLER 176 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 210
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.96 E-value=1.5e-30 Score=212.93 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=107.1
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
|+++|+++.|++..+. +++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+ +.+
T Consensus 1 i~~~~~~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~--------------i~~ 61 (178)
T cd03247 1 LSINNVSFSYPEQEQQ--VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGE--------------ITL 61 (178)
T ss_pred CEEEEEEEEeCCCCcc--ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCE--------------EEE
Confidence 4789999999763113 4599999999999999999999999999999999986 66663 444
Q ss_pred CCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~ 236 (255)
++.... .. ....+...++ ++...... .++.+++ +..||+||+||+++|++++.+|++||+||||
T Consensus 62 ~g~~~~-----~~--~~~~~~~i~~~~q~~~~~~-~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 62 DGVPVS-----DL--EKALSSLISVLNQRPYLFD-TTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred CCEEHH-----HH--HHHHHhhEEEEccCCeeec-ccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 443211 00 1112222333 33322222 3555555 6789999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHh
Q 025293 237 LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~ 253 (255)
++||+..++.+.+++.+
T Consensus 127 ~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 127 VGLDPITERQLLSLIFE 143 (178)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999999999875
No 211
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.96 E-value=2.3e-30 Score=212.21 Aligned_cols=140 Identities=21% Similarity=0.264 Sum_probs=107.7
Q ss_pred EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecC
Q 025293 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158 (255)
Q Consensus 79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~ 158 (255)
+++||++.|++ +. +|+++||+|++|++++|+||||||||||+++|+|+++ |++| . +.++
T Consensus 1 ~~~~l~~~~~~--~~--~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G-------------~-v~~~ 59 (180)
T cd03214 1 EVENLSVGYGG--RT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSG-------------E-ILLD 59 (180)
T ss_pred CeeEEEEEECC--ee--eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCc-------------E-EEEC
Confidence 46899999976 33 5599999999999999999999999999999999986 6665 3 4455
Q ss_pred CCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293 159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~ 236 (255)
+..... .+ ........++. .++++.+++. .+..+..||+||+||+++|++++.+|+++|+||||
T Consensus 60 g~~~~~--~~----~~~~~~~i~~~--------~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 125 (180)
T cd03214 60 GKDLAS--LS----PKELARKIAYV--------PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125 (180)
T ss_pred CEECCc--CC----HHHHHHHHhHH--------HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 543211 01 11112222221 1156666654 34667899999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHh
Q 025293 237 LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~ 253 (255)
++||+.++..+.+++.+
T Consensus 126 ~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 126 SHLDIAHQIELLELLRR 142 (180)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999999865
No 212
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=2.5e-30 Score=225.06 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=120.4
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC--------CCc-cCCCCCC
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KAS-SFDSQVK 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~--------~G~-~~~~~~~ 147 (255)
||+++||++.|++ +. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |+ +|+ .+++...
T Consensus 1 ml~~~nl~~~~~~--~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVARRH--RA--ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEECC--Ee--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence 4889999999986 34 4599999999999999999999999999999999997 87 787 4444221
Q ss_pred -C-------CCeEEEEecCCCCCCCccCCcccChHHHHHhc----CCCCCccHHHHHHHHHhhccc--CCccCCCCCccc
Q 025293 148 -P-------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV 213 (255)
Q Consensus 148 -~-------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~ 213 (255)
. ...++ +.++..... .+++.+++.+..... +............+++.+++. .+.++..||+||
T Consensus 74 ~~~~~~~~~~~~~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (272)
T PRK13547 74 AAIDAPRLARLRAV-LPQAAQPAF--AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE 150 (272)
T ss_pred ccCCHHHHHhhcEE-ecccCCCCC--CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 1 11333 333322111 134444433211000 000111223456777777775 357788999999
Q ss_pred ccchhhhhhhc---------cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~---------~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++|+ .+|++||+||||++||+..+..+.+++.+
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 199 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR 199 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 99999999999 59999999999999999999999999875
No 213
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7e-30 Score=219.81 Aligned_cols=170 Identities=18% Similarity=0.128 Sum_probs=120.6
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC---CCCc-cCCCCCC----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK---- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p---~~G~-~~~~~~~---- 147 (255)
.+|+++||++.|++ +. +++|+||+|.+||++||+|+||||||||+++|+|+.+. .| ++|+ .+++...
T Consensus 4 ~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGK--FE--ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECC--ee--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEccccc
Confidence 47999999999986 34 45999999999999999999999999999999998620 03 4788 4444211
Q ss_pred ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k 214 (255)
...+++ +.+... ... .++.+++.+.....+.... .........++.+++. .+..+..||+||+
T Consensus 79 ~~~~~~~~~i~~-~~q~~~-~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 79 EDVVQLRKQVGM-VFQQPN-PFP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred ccHHHhcCeEEE-EECCCc-cCC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHH
Confidence 122444 333322 111 3555555443322222111 1112334556665542 3467789999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 214
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.6e-30 Score=224.94 Aligned_cols=172 Identities=14% Similarity=0.146 Sum_probs=122.8
Q ss_pred CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC---CCCc-cCCCCCC--
Q 025293 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK-- 147 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p---~~G~-~~~~~~~-- 147 (255)
..++|+++||++.|++ +. +++|+||+|.+||+++|+||||||||||+++|+|+.+. .| ++|+ .+++...
T Consensus 36 ~~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~-~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE--FE--AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDL-IPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred CceEEEEeeeEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCCceEEEECCEEhhh
Confidence 4568999999999976 33 55999999999999999999999999999999998520 03 8898 4444211
Q ss_pred --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~------~~~~~~~lS~G 212 (255)
...+++ +.++.. +.. .++.+++.+.....+.... .....+..+++.+++. .+.++..||+|
T Consensus 111 ~~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 186 (286)
T PRK14275 111 KFTDEVLLRKKIGM-VFQKPN-PFP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGG 186 (286)
T ss_pred cccchHHhhhcEEE-ECCCCC-CCc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHH
Confidence 112343 333322 211 2555555543322222111 1122344566666542 35678899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++|+.+|++||+||||++||+.++..+.+++.+.
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~ 228 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL 228 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 215
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.3e-30 Score=243.18 Aligned_cols=168 Identities=16% Similarity=0.161 Sum_probs=125.5
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
++|+++||++.|++ +. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 3 ~~l~~~~l~~~~~~--~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 3 PYLSFDGIGKTFPG--VK--ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTTA 75 (501)
T ss_pred ceEEEeeeEEEECC--EE--EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHH
Confidence 58999999999986 33 5599999999999999999999999999999999998 99999 4444221
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHH--hcCC-CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la 220 (255)
...+|+ +.+....+ ..+++.+++.+... ..+. ........+.++++.+++. .+.++..|||||+||+++|
T Consensus 76 ~~~~~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (501)
T PRK11288 76 ALAAGVAI-IYQELHLV--PEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA 152 (501)
T ss_pred HHhCCEEE-EEechhcc--CCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence 123555 33332211 12455554443211 1111 1111123456788888875 3567889999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|+.+|++|||||||++||+.++..+.++|.+
T Consensus 153 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (501)
T PRK11288 153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRE 185 (501)
T ss_pred HHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 216
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.96 E-value=3.8e-30 Score=237.23 Aligned_cols=175 Identities=17% Similarity=0.226 Sum_probs=134.9
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC----CCc-cCCCC-CC--
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----KAS-SFDSQ-VK-- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~----~G~-~~~~~-~~-- 147 (255)
++|+++||++.|......+.+++||||+|.+||++||+|.|||||||+++.|.|+++ +. +|+ .+++. ..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~---~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP---EGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcccceEEEECCcchhcC
Confidence 489999999999764444457799999999999999999999999999999999995 33 566 45542 11
Q ss_pred ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC-CCCCccHHHHHHHHHhhcccC----CccCCCCCccc
Q 025293 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGV 213 (255)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~----~~~~~~lS~G~ 213 (255)
...++. +.++.+...++.+++...+.......+ ...........++++.+++.. +.|+++|||||
T Consensus 81 ~~~~~r~~rg~~Ia~-i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 81 SEREMRKLRGKRIAM-IFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred CHHHHHHhccccEEE-EecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 133454 666666555544454444444333333 223334556778899998863 34899999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||||.||+||+.+|++||+||||.+||+..+.++.++|++.
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l 200 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDL 200 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999764
No 217
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=2.3e-30 Score=212.52 Aligned_cols=143 Identities=21% Similarity=0.236 Sum_probs=104.3
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
++|+++|+++.| +++++||+|++|++++|+|+||||||||+++|+|+++ |++|+ +
T Consensus 3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~--------------i 57 (182)
T cd03215 3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGE--------------I 57 (182)
T ss_pred cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCce--------------E
Confidence 479999999988 3499999999999999999999999999999999996 77764 3
Q ss_pred ecCCCCCCCccCCcccChHHHHHhcCC-CCCc---cHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEE
Q 025293 156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTF---NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~---~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~ill 231 (255)
.+++..... .+ .........++ +++. ......++.+++.+... ||+||+||+++|++++.+|+++|
T Consensus 58 ~~~g~~~~~--~~---~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~lll 127 (182)
T cd03215 58 TLDGKPVTR--RS---PRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLI 127 (182)
T ss_pred EECCEECCc--cC---HHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEE
Confidence 334332210 00 00111112222 2221 11112345555443221 99999999999999999999999
Q ss_pred EcCCCCCCChhHHHHHHHHHHh
Q 025293 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|||+++||+.++..+.+++.+
T Consensus 128 lDEP~~~LD~~~~~~l~~~l~~ 149 (182)
T cd03215 128 LDEPTRGVDVGAKAEIYRLIRE 149 (182)
T ss_pred ECCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 218
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.7e-30 Score=221.14 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=123.8
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC------C-C
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS------Q-V 146 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~------~-~ 146 (255)
.++|+++|++++|++ +. +++|+||+|.+||+++|+|+||||||||+++|+|+.. |++|+ .+++ . .
T Consensus 8 ~~~i~~~~~~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 8 EDVFNISRLYLYIND--KA--ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI 80 (257)
T ss_pred hhheeeeeEEEecCC--ce--eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence 357999999999987 33 5599999999999999999999999999999999997 89876 2222 1 1
Q ss_pred C-------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293 147 K-------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 147 ~-------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G 212 (255)
. ...+++ +..+...+ ..+++.+++.+.....+.. .......+..+++.+++. .+..+..||+|
T Consensus 81 ~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 157 (257)
T PRK14246 81 FQIDAIKLRKEVGM-VFQQPNPF--PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG 157 (257)
T ss_pred ccCCHHHHhcceEE-EccCCccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence 1 122344 33332211 1245555554432222221 111123345677777763 24667889999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++++.+|+++|+||||++||..++..+.++|.+.
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~ 199 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL 199 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999753
No 219
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.9e-30 Score=221.51 Aligned_cols=167 Identities=17% Similarity=0.172 Sum_probs=119.8
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CCc-cCCCCCC--
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK-- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~-----~G~-~~~~~~~-- 147 (255)
++|+++|+++.|++ +. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |+ +|+ .+++...
T Consensus 6 ~~l~~~nl~~~~~~--~~--il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QK--ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIYE 78 (261)
T ss_pred ceEEEeeEEEEeCC--ee--EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhhc
Confidence 47999999999976 33 5599999999999999999999999999999999996 64 566 3333211
Q ss_pred --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G 212 (255)
....++ +..+.. ... .++.++........+. +.......+..+++.+++. .+..+..||+|
T Consensus 79 ~~~~~~~~~~~i~~-~~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 154 (261)
T PRK14258 79 RRVNLNRLRRQVSM-VHPKPN-LFP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGG 154 (261)
T ss_pred cccchHHhhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 111333 232211 111 3554544433222222 1111123345677777653 35677899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+++|++|+.+|++||+||||++||+.++..+.+++.+
T Consensus 155 q~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~ 195 (261)
T PRK14258 155 QQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS 195 (261)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998875
No 220
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=2.7e-30 Score=208.59 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=98.9
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
|+++||++.|++ ++ +++++||+|++||+++|+||||||||||+++|+|+++ |++| . +.+
T Consensus 1 l~~~~l~~~~~~--~~--vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G-------------~-v~~ 59 (163)
T cd03216 1 LELRGITKRFGG--VK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSG-------------E-ILV 59 (163)
T ss_pred CEEEEEEEEECC--eE--EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCe-------------E-EEE
Confidence 468999999986 34 5599999999999999999999999999999999995 5555 3 455
Q ss_pred CCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCC
Q 025293 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (255)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~ 237 (255)
++..... .+. ........++ +.+||+||+||+++|++++.+|+++|+||||+
T Consensus 60 ~g~~~~~--~~~---~~~~~~~i~~-----------------------~~qLS~G~~qrl~laral~~~p~illlDEP~~ 111 (163)
T cd03216 60 DGKEVSF--ASP---RDARRAGIAM-----------------------VYQLSVGERQMVEIARALARNARLLILDEPTA 111 (163)
T ss_pred CCEECCc--CCH---HHHHhcCeEE-----------------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 5543211 000 0011111111 11299999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHh
Q 025293 238 FLDGGVWKDVSSMFDE 253 (255)
Q Consensus 238 ~LD~~~~~~l~~ll~~ 253 (255)
+||+.+++.+.+++.+
T Consensus 112 ~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 112 ALTPAEVERLFKVIRR 127 (163)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999865
No 221
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.2e-30 Score=222.67 Aligned_cols=169 Identities=12% Similarity=0.093 Sum_probs=120.1
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (255)
.++|+++||++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+ .+++...
T Consensus 19 ~~~l~i~nl~~~~~~--~~--il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 19 APAMAAVNLTLGFAG--KT--VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred CcEEEEeeEEEEECC--EE--EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEcc
Confidence 358999999999986 34 4599999999999999999999999999999999986 6 5787 4443211
Q ss_pred --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G 212 (255)
...+++ +.++.. ++. .++.+++.+....... ..........++++.+++. .+..+..||+|
T Consensus 92 ~~~~~~~~~~~i~~-v~q~~~-l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgG 167 (276)
T PRK14271 92 NYRDVLEFRRRVGM-LFQRPN-PFP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGG 167 (276)
T ss_pred ccchhHHHhhheEE-eccCCc-cCC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHH
Confidence 112343 333221 111 3444444332211111 1111111234566666664 24567899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 209 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988753
No 222
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1e-29 Score=221.34 Aligned_cols=172 Identities=15% Similarity=0.096 Sum_probs=121.6
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCCc-cCCCCCC----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~--~~p~~G~-~~~~~~~---- 147 (255)
..+|+++|+++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|+++. ..|++|+ .+++...
T Consensus 23 ~~~l~~~nl~~~~~~--~~--il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CcEEEEEEEEEEECC--ee--EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 458999999999976 33 45999999999999999999999999999999999850 0027898 4443211
Q ss_pred ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k 214 (255)
....++ +..+.. .+. .++.++..+.....+... ......+.++++.+++. .+..+..||+||+
T Consensus 99 ~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 99 VDVAELRRRVGM-VFQRPN-PFP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQ 174 (272)
T ss_pred cCHHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHH
Confidence 112343 333221 111 244455443322222111 11122345566666653 3466789999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|+++|+||||++||+.++..+.+++.+.
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~ 214 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL 214 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 223
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=9.3e-30 Score=214.82 Aligned_cols=161 Identities=14% Similarity=0.133 Sum_probs=115.1
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
|+++|+++.|++..+. +++|+||+|++|++++|+||||||||||+++|+|+.+ |++|+ .+++... .
T Consensus 3 l~~~~l~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 3 IEFKNVSLRYRPNLPP--VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred EEEEEEEEecCCCCcc--cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence 6899999999752223 5599999999999999999999999999999999998 99998 4444221 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCccccc
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~kq 215 (255)
..+++ +..+.. +.. .++.++.. .........+...++.+++. ...++..||+||+|
T Consensus 78 ~~i~~-~~q~~~-l~~--~tv~enl~-------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q 146 (221)
T cd03244 78 SRISI-IPQDPV-LFS--GTIRSNLD-------PFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ 146 (221)
T ss_pred hhEEE-ECCCCc-ccc--chHHHHhC-------cCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence 22343 332222 111 13322221 11111223333444444332 13467899999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++|+.+|+++|+||||++||+.++..+.++|.+.
T Consensus 147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (221)
T cd03244 147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA 185 (221)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998753
No 224
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.96 E-value=4.4e-30 Score=207.89 Aligned_cols=135 Identities=17% Similarity=0.146 Sum_probs=103.0
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEe
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP 156 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~ 156 (255)
|+++|+++.|++. +. +++++||+|.+|++++|+|+||||||||+++|+|+++ |++|+ .+++. ...++ +.
T Consensus 1 i~~~~~~~~~~~~-~~--~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~---~~i~~-~~ 70 (166)
T cd03223 1 IELENLSLATPDG-RV--LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG---EDLLF-LP 70 (166)
T ss_pred CEEEEEEEEcCCC-Ce--eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC---ceEEE-EC
Confidence 4689999999642 23 4599999999999999999999999999999999997 88886 22221 12222 22
Q ss_pred cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~ 236 (255)
.+.. +. ..++.+++.+. .+..||+||+||+++|++++.+|+++|+||||
T Consensus 71 q~~~-~~---------------------------~~tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 71 QRPY-LP---------------------------LGTLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred CCCc-cc---------------------------cccHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 1111 00 01233333222 46889999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHh
Q 025293 237 LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~ 253 (255)
++||+..+..+.+++.+
T Consensus 120 ~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 120 SALDEESEDRLYQLLKE 136 (166)
T ss_pred cccCHHHHHHHHHHHHH
Confidence 99999999999998865
No 225
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.96 E-value=6.4e-30 Score=217.29 Aligned_cols=154 Identities=17% Similarity=0.147 Sum_probs=111.5
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC----CCCc-cCCCCCC------CCCeEEEEecCCCCCCC
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQVK------PPDVATVLPMDGFHLYL 164 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p----~~G~-~~~~~~~------~~~~g~~i~~~~~~~~~ 164 (255)
+++|+||+|++|++++|+||||||||||+++|+|+++ | ++|+ .+++... ...+++ +..+......
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~-~~q~~~~~~~ 76 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIAT-IMQNPRTAFN 76 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEE-EecCchhhcC
Confidence 3599999999999999999999999999999999997 8 8998 4444321 123444 3333211111
Q ss_pred ccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-----CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCC
Q 025293 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (255)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~L 239 (255)
..+++.++........+.........+.++++.+++. .+..+..||+||+||+++|++++.+|++|||||||++|
T Consensus 77 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L 156 (230)
T TIGR02770 77 PLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL 156 (230)
T ss_pred cccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 1134434333222222221111233467788888875 35678899999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 025293 240 DGGVWKDVSSMFDE 253 (255)
Q Consensus 240 D~~~~~~l~~ll~~ 253 (255)
|+.++..+.+++.+
T Consensus 157 D~~~~~~l~~~l~~ 170 (230)
T TIGR02770 157 DVVNQARVLKLLRE 170 (230)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998875
No 226
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.2e-30 Score=221.45 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=120.0
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCCc-cCCCCCC----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~--~~~p~~G~-~~~~~~~---- 147 (255)
.++|+++||++.|++ +. +++|+||+|++|+++||+|+||||||||+++|+|+++ ...|++|+ .+++...
T Consensus 22 ~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DH--ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred ceEEEEeeeEEEECC--cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 458999999999986 33 5599999999999999999999999999999999983 11148898 4444211
Q ss_pred ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCcc-HHHHHHHHHhhcc------cCCccCCCCCcccc
Q 025293 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~------~~~~~~~~lS~G~k 214 (255)
...+++ +..+.. ++. .++.+++.+.....+...... ...+.+.++.+++ ..+.++..||+||+
T Consensus 98 ~~~~~~~~~i~~-v~q~~~-~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 98 YSVEELRTNVGM-VFQKPN-PFP--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred ccHHHHhhhEEE-EecCCc-ccc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHH
Confidence 112444 333322 221 255555544322222111111 1123344444422 13567789999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|++|+.+|++||+||||++||+.++..+.++|.+
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 212 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999865
No 227
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.96 E-value=2.7e-30 Score=217.93 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=114.1
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
|+++|+++.|++..+. +++|+||+|++|++++|+||||||||||+++|+|+.+ |++|+ .+++... .
T Consensus 3 l~~~~l~~~~~~~~~~--~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 3 IEFRNVSFSYPNQEIP--ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred EEEEEEEEEcCCCCcc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence 6899999999752122 5699999999999999999999999999999999998 99998 4444221 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--C-----------ccCCCCCccccc
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-----------VYAPSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~-----------~~~~~lS~G~kq 215 (255)
...++ +..+.. +.. .++.++... .. .......+..+++.+++.. + ..+..||+||+|
T Consensus 78 ~~i~~-~~q~~~-~~~--~tv~e~l~~-----~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~q 147 (220)
T cd03245 78 RNIGY-VPQDVT-LFY--GTLRDNITL-----GA-PLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQ 147 (220)
T ss_pred hhEEE-eCCCCc-ccc--chHHHHhhc-----CC-CCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHH
Confidence 12333 332221 111 122222111 11 1112223445555555431 1 134689999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|++||+||||++||+.++..+.+++.+.
T Consensus 148 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 186 (220)
T cd03245 148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL 186 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998763
No 228
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.96 E-value=6.2e-30 Score=241.70 Aligned_cols=172 Identities=15% Similarity=0.197 Sum_probs=126.8
Q ss_pred CCeEEecCchheehhh---------hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC
Q 025293 75 IPVVEARCMDEVYDAL---------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~---------~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~ 144 (255)
.++|+++||++.|+.. .+. +|+|+||+|++||++||+||||||||||+|+|+|++ |++|+ .+++
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g 346 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNV--VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDG 346 (529)
T ss_pred CCcccccCcEEEeecCccccccccccce--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECC
Confidence 3579999999999521 123 569999999999999999999999999999999998 88998 4544
Q ss_pred CCC-----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC--CCCCccHHHHHHHHHhhccc---CCccCCC
Q 025293 145 QVK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPS 208 (255)
Q Consensus 145 ~~~-----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~ 208 (255)
... ...+|+ +.++........+++.+++.+.....+ .........+.++++.+++. .+.++..
T Consensus 347 ~~i~~~~~~~~~~~~~~i~~-v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 425 (529)
T PRK15134 347 QPLHNLNRRQLLPVRHRIQV-VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAE 425 (529)
T ss_pred EEccccchhhHHHhhhceEE-EEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCcc
Confidence 211 123455 444321111122466666554322211 11111223456788888874 3677899
Q ss_pred CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||||||||++|++|+.+|++||+||||++||+.++..+.++|.+
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 470 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS 470 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999975
No 229
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.96 E-value=5.1e-30 Score=218.69 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=113.7
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
|+++||++.|++..+. +++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 i~~~~l~~~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (237)
T cd03252 1 ITFEHVRFRYKPDGPV--ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR 75 (237)
T ss_pred CEEEEEEEecCCCCcc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence 4689999999642223 5599999999999999999999999999999999998 99998 4554321 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHH---------HHHHHhh--ccc--CCccCCCCCccccc
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNL--RNQ--GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~l--~~~--~~~~~~~lS~G~kq 215 (255)
..+++ +..+.. +.. .++.+++.... . ......+ .++++.+ ++. .+.++..||+||+|
T Consensus 76 ~~i~~-~~q~~~-~~~--~tv~~nl~~~~-----~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~q 145 (237)
T cd03252 76 RQVGV-VLQENV-LFN--RSIRDNIALAD-----P-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQ 145 (237)
T ss_pred hcEEE-EcCCch-hcc--chHHHHhhccC-----C-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHH
Confidence 12444 333322 111 24333332110 0 0111111 1223322 111 24567899999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|++||+||||++||+..+..+.++|.+.
T Consensus 146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 184 (237)
T cd03252 146 RIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI 184 (237)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998753
No 230
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.96 E-value=7.1e-30 Score=240.89 Aligned_cols=170 Identities=18% Similarity=0.229 Sum_probs=125.8
Q ss_pred CCeEEecCchheehh---hhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cC--CCCC--
Q 025293 75 IPVVEARCMDEVYDA---LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF--DSQV-- 146 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~---~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~--~~~~-- 146 (255)
.++|+++||++.|++ ..+. +++|+||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+ ++..
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~--il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~ 351 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVK--AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVD 351 (520)
T ss_pred CceEEEeccEEEeccCCCCCce--EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccc
Confidence 458999999999952 1123 5599999999999999999999999999999999998 99999 45 3211
Q ss_pred -C----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC-------CccCCC
Q 025293 147 -K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------SVYAPS 208 (255)
Q Consensus 147 -~----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-------~~~~~~ 208 (255)
. ...+|+ +.++.. +. ..+++.+++..... ...........+.++++.+++.. ++++..
T Consensus 352 ~~~~~~~~~~~~~~~i~~-v~q~~~-l~-~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 427 (520)
T TIGR03269 352 MTKPGPDGRGRAKRYIGI-LHQEYD-LY-PHRTVLDNLTEAIG-LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE 427 (520)
T ss_pred ccccchhhHHHHhhhEEE-EccCcc-cC-CCCcHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhh
Confidence 0 112454 443321 11 12456555543221 11111112234567888888853 577889
Q ss_pred CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||||+||+++|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~ 472 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK 472 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999864
No 231
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.96 E-value=1.8e-29 Score=217.21 Aligned_cols=170 Identities=17% Similarity=0.131 Sum_probs=117.7
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH--hcccCCCCCc-cCCCCCC-C---
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQVK-P--- 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl--l~~~~p~~G~-~~~~~~~-~--- 148 (255)
++|+++||++.|++ +. +|+|+||+|++||++||+|+||||||||+++|+|+ ++ |++|+ .+++... .
T Consensus 6 ~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 6 PILEIKNLHASVNE--NE--ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLEP 78 (252)
T ss_pred ceEEEEeEEEEeCC--EE--eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCCh
Confidence 47999999999986 33 56999999999999999999999999999999997 45 89998 4444211 1
Q ss_pred ---CCeEE-EEecCCCCCCCccCCcccChHHHHHhc----CCCCCc---cHHHHHHHHHhhccc---CCccCC-CCCccc
Q 025293 149 ---PDVAT-VLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTF---NPLLLLNCLKNLRNQ---GSVYAP-SFDHGV 213 (255)
Q Consensus 149 ---~~~g~-~i~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~---~~~~~~~~l~~l~~~---~~~~~~-~lS~G~ 213 (255)
...+. ++..+. ... ..++..++........ ...... ....+.++++.+++. .+..+. .||+||
T Consensus 79 ~~~~~~~~~~~~q~~-~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 79 EERAHLGIFLAFQYP-IEI-PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred hhhheeeEEEEeccc-ccc-ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence 11121 122221 111 1123333322211110 000000 112345677877775 245555 599999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+++|++|+.+|+++|+||||++||+.++..+.++|.+.
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 197 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKL 197 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 232
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.96 E-value=5.6e-30 Score=240.50 Aligned_cols=167 Identities=17% Similarity=0.169 Sum_probs=122.6
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC--CCCc-cCCCCCC------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK------ 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p--~~G~-~~~~~~~------ 147 (255)
+|+++||++.|++ +. +++|+||+|++|+++||+||||||||||+++|+|+++ | ++|+ .+++...
T Consensus 1 ~l~i~~l~~~~~~--~~--il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 1 LLEMKGIVKTFGG--VK--ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred CEEEEeEEEEeCC--eE--eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence 4789999999986 34 5599999999999999999999999999999999986 6 6898 4444211
Q ss_pred ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhc--C--CCCCccHHHHHHHHHhhcccC---CccCCCCCcccccch
Q 025293 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV 217 (255)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~kqrv 217 (255)
...+|+ +.++.. +. ..+++.+++.+..... + .........+.++++.+++.. +.++..|||||+||+
T Consensus 74 ~~~~~~i~~-v~q~~~-~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 74 DTERAGIVI-IHQELT-LV-PELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred HHHhCCEEE-Eeeccc-cC-CCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 123555 333322 11 1245555443322111 0 111111234567888888753 356889999999999
Q ss_pred hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|++|+.+|++||+||||++||+.++..+.++|.+
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999865
No 233
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=1.6e-29 Score=240.22 Aligned_cols=165 Identities=16% Similarity=0.073 Sum_probs=123.7
Q ss_pred CeEEecCchheeh-hhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 76 ~~l~v~~lsk~y~-~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
++|+++||++.|+ + +. +|+|+||+|++|++++|+|||||||||||++|+|+++ |++|+ .+.. ...+|+
T Consensus 5 ~~l~i~~l~~~y~~~--~~--il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~---~~~i~~ 74 (556)
T PRK11819 5 YIYTMNRVSKVVPPK--KQ--ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAP---GIKVGY 74 (556)
T ss_pred EEEEEeeEEEEeCCC--Ce--eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEEE
Confidence 5899999999998 5 33 5599999999999999999999999999999999998 99998 3332 123555
Q ss_pred EEecCCCCCCCccCCcccChHHHHHh--------------cCCCCC----------------------ccHHHHHHHHHh
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT----------------------FNPLLLLNCLKN 197 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~~~~----------------------~~~~~~~~~l~~ 197 (255)
+.+..... ..+++.+++.+.... ...... .....+..+++.
T Consensus 75 -v~Q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 75 -LPQEPQLD--PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred -EecCCCCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 44432211 124666655432110 011100 002234567777
Q ss_pred hccc-CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 198 LRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 198 l~~~-~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++. .+.++..|||||||||++|++++.+|++|||||||++||+.++..+.++|.+
T Consensus 152 ~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~ 208 (556)
T PRK11819 152 LRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD 208 (556)
T ss_pred CCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh
Confidence 7764 3677889999999999999999999999999999999999999999999875
No 234
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=2.2e-29 Score=197.71 Aligned_cols=168 Identities=19% Similarity=0.185 Sum_probs=133.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC---------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------- 146 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~--------- 146 (255)
.|+++|+.+.||..+ +|-||+|+-+.||.+.++||+|+|||||+|.|+-+.. |.+|+ .+.++-
T Consensus 2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~ 74 (242)
T COG4161 2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence 478999999999865 6699999999999999999999999999999998887 99998 222211
Q ss_pred -----CCCCeEEEEecCCCCCCCccCCcccChHHH-HHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchh
Q 025293 147 -----KPPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 147 -----~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~ 218 (255)
.+.++|. +++.+ .++ +.+++.+++... .+..|++.+......+++++++.+. .++++-.|||||+|||+
T Consensus 75 k~i~~lr~~vgm-vfqqy-~lw-phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva 151 (242)
T COG4161 75 KAIRDLRRNVGM-VFQQY-NLW-PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA 151 (242)
T ss_pred HHHHHHHHhhhh-hhhhh-ccC-chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence 0234565 33332 332 236776665543 3445666666666778888888775 56778899999999999
Q ss_pred hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||+|++.|++|++||||+.|||+-..++.++|++.
T Consensus 152 iaralmmkpqvllfdeptaaldpeitaqvv~iikel 187 (242)
T COG4161 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL 187 (242)
T ss_pred HHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
No 235
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.3e-30 Score=204.39 Aligned_cols=168 Identities=17% Similarity=0.159 Sum_probs=131.5
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeE---
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA--- 152 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g--- 152 (255)
+++++||+..-+. +.+ +.++||++.+||++-|.||||||||||||+|+|+++ |++|+ .+.+........
T Consensus 2 ~L~a~~L~~~R~e--~~l--f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 2 MLEAENLSCERGE--RTL--FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred cchhhhhhhccCc--cee--ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence 5788999988887 444 599999999999999999999999999999999998 99999 444322111110
Q ss_pred -EEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcE
Q 025293 153 -TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 153 -~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~i 229 (255)
....+....--..++++.||+.|.....+. .....+.+.++.+++. .+.++..||-||++||++|+.++..+++
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL 151 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL 151 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc
Confidence 111111122223457899999998877653 2334567788888886 5778889999999999999999999999
Q ss_pred EEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 230 VIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 230 lllDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||||||++||......+..++...
T Consensus 152 WiLDEP~taLDk~g~a~l~~l~~~H 176 (209)
T COG4133 152 WILDEPFTALDKEGVALLTALMAAH 176 (209)
T ss_pred eeecCcccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999888653
No 236
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.9e-30 Score=240.04 Aligned_cols=167 Identities=14% Similarity=0.109 Sum_probs=122.5
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CCC-----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VKP----- 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~~----- 148 (255)
++|+++|+++.|+. +++|+||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++. +..
T Consensus 264 ~~l~~~~l~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 264 TVFEVRNVTSRDRK------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred cEEEEeCccccCCC------cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence 47999999997642 5699999999999999999999999999999999998 99999 45442 211
Q ss_pred ---CCeEEEEecCC--CCCCCccCCcccChHHHHHh----c----CC-CCCccHHHHHHHHHhhccc---CCccCCCCCc
Q 025293 149 ---PDVATVLPMDG--FHLYLSQLDAMEDPKEAHAR----R----GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (255)
Q Consensus 149 ---~~~g~~i~~~~--~~~~~~~l~~~~~~~~~~~~----~----~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~ 211 (255)
..+|+ +.++. ..+ ...+++.++....... . +. ........+.++++.+++. .+.++..|||
T Consensus 335 ~~~~~i~~-v~q~~~~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 335 AVKKGMAY-ITESRRDNGF-FPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSG 412 (510)
T ss_pred HHHCCcEE-ccCccccCCC-cCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCCh
Confidence 12454 33321 111 1124554443321110 0 10 0001112356788888884 4677889999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||||||++|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 454 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQ 454 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999975
No 237
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.96 E-value=2.1e-29 Score=216.19 Aligned_cols=167 Identities=15% Similarity=0.083 Sum_probs=113.4
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCCc-cCCCCCCC-----
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p~~G~-~~~~~~~~----- 148 (255)
||+++||++.|++ +. +++|+||+|++|++++|+|+||||||||+++|+|++ + |++|+ .+++....
T Consensus 1 ~i~~~nl~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 1 MLSIKDLHVSVED--KA--ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred CeEEEEEEEEeCC--ee--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCHH
Confidence 4789999999986 33 559999999999999999999999999999999994 5 89998 45443211
Q ss_pred ----CCeEEEEecCCCCCCCccCCcccChHHHHHhc-CC-C-CCcc----HHHHHHHHHhhccc---CCccCC-CCCccc
Q 025293 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA-P-WTFN----PLLLLNCLKNLRNQ---GSVYAP-SFDHGV 213 (255)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~-~-~~~~----~~~~~~~l~~l~~~---~~~~~~-~lS~G~ 213 (255)
..+++ +..+..... .++............ .. . .... ...+.++++.+++. .+..+. .||+||
T Consensus 74 ~~~~~~i~~-~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~ 150 (248)
T PRK09580 74 DRAGEGIFM-AFQYPVEIP--GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE 150 (248)
T ss_pred HHhhcceEE-EecCchhcc--chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHH
Confidence 12333 222211111 011111111000000 00 0 0001 12234566666663 233443 799999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~ 190 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNS 190 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998865
No 238
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.2e-29 Score=238.58 Aligned_cols=173 Identities=16% Similarity=0.161 Sum_probs=124.5
Q ss_pred CCeEEecCchheehhh-hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCc-cCCCC-CC---
Q 025293 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQ-VK--- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~-~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-~~G~-~~~~~-~~--- 147 (255)
.++|+++||++.|+.. .+. +++|+||+|++||++||+||||||||||+|+|+|+++ | ++|+ .+++. +.
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~--vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~ 331 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIK--RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRN 331 (506)
T ss_pred CceEEEecCccccccccccc--cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCC
Confidence 3579999999999421 123 5699999999999999999999999999999999985 5 8998 44442 11
Q ss_pred -----CCCeEEEEecCCC-CCCCccCCcccChHHHHH--hcC---CCCCccHHHHHHHHHhhccc---CCccCCCCCccc
Q 025293 148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA--RRG---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (255)
Q Consensus 148 -----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~--~~~---~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~ 213 (255)
...+|+ +.++.. ......+++.++..+... ... .........+.++++.+++. .++++..|||||
T Consensus 332 ~~~~~~~~i~~-v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 410 (506)
T PRK13549 332 PQQAIAQGIAM-VPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGN 410 (506)
T ss_pred HHHHHHCCCEE-eCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHH
Confidence 112454 333321 001112455555443211 111 01111223467788888874 367788999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++|++++.+|++|||||||++||+.+++.+.++|.+
T Consensus 411 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 450 (506)
T PRK13549 411 QQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ 450 (506)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 239
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.96 E-value=5e-30 Score=217.25 Aligned_cols=168 Identities=16% Similarity=0.161 Sum_probs=117.9
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
..+|+++|+++.|++... ..+++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 9 ~~~l~~~~l~~~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPD-TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred CceEEEEEEEEEeCCCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCHH
Confidence 458999999999975211 125699999999999999999999999999999999998 99998 4444321
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCcc--HH-----HHHHHHHhh--ccc--CCccCCCCCcccc
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN--PL-----LLLNCLKNL--RNQ--GSVYAPSFDHGVG 214 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~l~~l--~~~--~~~~~~~lS~G~k 214 (255)
....++ +..+.. ++. .++.++..+... ..... .. ...++++.+ ++. .+.++..||+||+
T Consensus 85 ~~~~~i~~-~~q~~~-l~~--~tv~~nl~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~ 156 (226)
T cd03248 85 YLHSKVSL-VGQEPV-LFA--RSLQDNIAYGLQ----SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQK 156 (226)
T ss_pred HHHhhEEE-EecccH-HHh--hhHHHHhccccC----CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHH
Confidence 112344 333221 111 133222211100 00000 00 123455555 333 3566889999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++|+.+|+++|+||||++||+..+..+.+++.+.
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 196 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDW 196 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 240
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.8e-30 Score=212.35 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=103.2
Q ss_pred eEEecCchheehhh--hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293 77 VVEARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (255)
Q Consensus 77 ~l~v~~lsk~y~~~--~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (255)
.|+++|+++.|++. .+. +++++||+|++|++++|+||||||||||+++|+|+... -|++|+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~-------------- 65 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQ--LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGE-------------- 65 (192)
T ss_pred EEEEeeeEEEecCCCCceE--eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceE--------------
Confidence 68999999999741 123 56999999999999999999999999999999997520 045554
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEc
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlD 233 (255)
+.+++.... .......++ ++........++.+++.+.... ..||+||+||+++|++++.+|+++|+|
T Consensus 66 i~~~g~~~~----------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~LSgGe~qrv~la~al~~~p~vlllD 133 (192)
T cd03232 66 ILINGRPLD----------KNFQRSTGYVEQQDVHSPNLTVREALRFSALL--RGLSVEQRKRLTIGVELAAKPSILFLD 133 (192)
T ss_pred EEECCEehH----------HHhhhceEEecccCccccCCcHHHHHHHHHHH--hcCCHHHhHHHHHHHHHhcCCcEEEEe
Confidence 333333210 001111121 2211111112333333321111 189999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHh
Q 025293 234 GNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 234 ep~~~LD~~~~~~l~~ll~~ 253 (255)
|||++||+.++..+.+++.+
T Consensus 134 EP~~~LD~~~~~~l~~~l~~ 153 (192)
T cd03232 134 EPTSGLDSQAAYNIVRFLKK 153 (192)
T ss_pred CCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999875
No 241
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=3.9e-29 Score=209.09 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=115.7
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
..|+++|+++.|++..+. +++|+||+|++|++++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 5 ~~l~~~~l~~~~~~~~~~--~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 5 GEIEVENLSVRYAPDLPP--VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLED 79 (207)
T ss_pred CeEEEEEEEEEeCCCCcc--cccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHH
Confidence 468999999999752123 5699999999999999999999999999999999998 99998 4444211
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccC
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
...+++ +..+.. +.. .++.++.. +........+.+.++ .+.++..||+||+||+++|++++.+
T Consensus 80 ~~~~i~~-v~q~~~-~~~--~tv~~~l~-------~~~~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 80 LRSSLTI-IPQDPT-LFS--GTIRSNLD-------PFDEYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred HHhhEEE-EecCCc-ccC--ccHHHHhc-------ccCCCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 123444 333322 111 23333221 111122223333333 3567889999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|+||||++||+..+..+.++|.+.
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~ 171 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREE 171 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998753
No 242
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.96 E-value=1.3e-29 Score=210.18 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=103.4
Q ss_pred eEEecCchheehhh----hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCCccCCCCCCCCC
Q 025293 77 VVEARCMDEVYDAL----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPPD 150 (255)
Q Consensus 77 ~l~v~~lsk~y~~~----~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p~~G~~~~~~~~~~~ 150 (255)
.|+++||++.|++. .+. +++|+||+|++|++++|+||||||||||+++|+|++ + |++|+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~--~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~---------- 67 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQ--LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGE---------- 67 (194)
T ss_pred EEEEEeeEEEEecCCCccccc--ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceE----------
Confidence 47899999999751 123 569999999999999999999999999999999998 7 77775
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcE
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~i 229 (255)
+.+++..... .......++ ++........++.+++.+... ...||+||+||+++|++|+.+|++
T Consensus 68 ----i~~~g~~~~~---------~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~--~~~LS~G~~qrv~laral~~~p~i 132 (194)
T cd03213 68 ----VLINGRPLDK---------RSFRKIIGYVPQDDILHPTLTVRETLMFAAK--LRGLSGGERKRVSIALELVSNPSL 132 (194)
T ss_pred ----EEECCEeCch---------HhhhheEEEccCcccCCCCCcHHHHHHHHHH--hccCCHHHHHHHHHHHHHHcCCCE
Confidence 2222221110 000011111 111111111122222222111 118999999999999999999999
Q ss_pred EEEcCCCCCCChhHHHHHHHHHHh
Q 025293 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 230 lllDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|+||||++||+.+++.+.+++.+
T Consensus 133 lllDEP~~~LD~~~~~~l~~~l~~ 156 (194)
T cd03213 133 LFLDEPTSGLDSSSALQVMSLLRR 156 (194)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999875
No 243
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.96 E-value=1.2e-29 Score=215.58 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=110.8
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCCeEEEEecCCCCCCCccCCcccC
Q 025293 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAMED 172 (255)
Q Consensus 97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~~~~~~~~~~l~~~~~ 172 (255)
++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... .+..++ +.+..... ..+++.++
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~-v~q~~~l~--~~~tv~e~ 74 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMV-VFQNYSLL--PWLTVREN 74 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheE-EecCcccC--CCCCHHHH
Confidence 479999999999999999999999999999999998 99999 4444221 122343 33332211 12455555
Q ss_pred hHHHHHh-c-CCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHH
Q 025293 173 PKEAHAR-R-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (255)
Q Consensus 173 ~~~~~~~-~-~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~ 248 (255)
..+.... . +.........+..+++.+++. .+.++..|||||+||+++|++|+.+|++||+||||++||+.++..+.
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 5443211 1 111111123356778877775 35678899999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 025293 249 SMFDE 253 (255)
Q Consensus 249 ~ll~~ 253 (255)
++|.+
T Consensus 155 ~~l~~ 159 (230)
T TIGR01184 155 EELMQ 159 (230)
T ss_pred HHHHH
Confidence 99865
No 244
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-29 Score=238.47 Aligned_cols=162 Identities=12% Similarity=0.121 Sum_probs=123.4
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (255)
.+|+++||++.|++ +. +++|+||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++. ..+|+
T Consensus 318 ~~l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~- 386 (530)
T PRK15064 318 NALEVENLTKGFDN--GP--LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANIGY- 386 (530)
T ss_pred ceEEEEeeEEeeCC--ce--eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE-
Confidence 48999999999986 33 5599999999999999999999999999999999998 99998 44432 23454
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcEEE
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~ill 231 (255)
+.+.........+++.++... ... .......+.++++.+++. .+.++..|||||+||+++|++++.+|++||
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~----~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll 461 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQ----WRQ-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV 461 (530)
T ss_pred EcccccccCCCCCcHHHHHHH----hcc-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 433321111111344333221 111 112234567788888873 467889999999999999999999999999
Q ss_pred EcCCCCCCChhHHHHHHHHHHh
Q 025293 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||||++||+.++..+.+++.+
T Consensus 462 LDEPt~~LD~~~~~~l~~~l~~ 483 (530)
T PRK15064 462 MDEPTNHMDMESIESLNMALEK 483 (530)
T ss_pred EcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998865
No 245
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.96 E-value=8.2e-30 Score=212.30 Aligned_cols=146 Identities=17% Similarity=0.123 Sum_probs=103.4
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCCccCCCCCCCCCeEEEE
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
++++|+++.|++ +. +++|+||++.+||+++|+|+||||||||+++|+|+. . |++|+ +
T Consensus 1 l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~--------------i 59 (200)
T cd03217 1 LEIKDLHVSVGG--KE--ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGE--------------I 59 (200)
T ss_pred CeEEEEEEEeCC--EE--eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccE--------------E
Confidence 468999999986 33 559999999999999999999999999999999984 4 56663 3
Q ss_pred ecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293 156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe 234 (255)
.+++..... .. .........++ ++........++.+++ ......||+||+||+++|++++.+|+++|+||
T Consensus 60 ~~~g~~~~~--~~---~~~~~~~~i~~v~q~~~~~~~~~~~~~l----~~~~~~LS~G~~qrv~laral~~~p~illlDE 130 (200)
T cd03217 60 LFKGEDITD--LP---PEERARLGIFLAFQYPPEIPGVKNADFL----RYVNEGFSGGEKKRNEILQLLLLEPDLAILDE 130 (200)
T ss_pred EECCEECCc--CC---HHHHhhCcEEEeecChhhccCccHHHHH----hhccccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 444432211 00 00001111222 2222111112223322 22235899999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHh
Q 025293 235 NYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 235 p~~~LD~~~~~~l~~ll~~ 253 (255)
||++||+.++..+.+++.+
T Consensus 131 Pt~~LD~~~~~~l~~~L~~ 149 (200)
T cd03217 131 PDSGLDIDALRLVAEVINK 149 (200)
T ss_pred CCccCCHHHHHHHHHHHHH
Confidence 9999999999999999875
No 246
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.3e-29 Score=211.26 Aligned_cols=172 Identities=16% Similarity=0.093 Sum_probs=122.2
Q ss_pred CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc--cCCCCC-----
Q 025293 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQV----- 146 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~--~~~~~~----- 146 (255)
.+++|+++||+..|++ ++++ +|+|++|++||..+|+|||||||||||++++|... |++|. .++...
T Consensus 28 ~~~li~l~~v~v~r~g--k~iL--~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 28 NEPLIELKNVSVRRNG--KKIL--GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGET 100 (257)
T ss_pred CcceEEecceEEEECC--Eeec--cccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcc
Confidence 3568999999999998 5555 99999999999999999999999999999999997 88876 222111
Q ss_pred ---CCCCeEEEEec-CCCCCCCccCCcccChH-HHHHhcCCCC-C---ccHHHHHHHHHhhccc--CCccCCCCCccccc
Q 025293 147 ---KPPDVATVLPM-DGFHLYLSQLDAMEDPK-EAHARRGAPW-T---FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD 215 (255)
Q Consensus 147 ---~~~~~g~~i~~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~-~---~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kq 215 (255)
.+..+|. +.- -...+. ...++.+-+. -...-.|+++ . .+......+++.++.. .+++...||-||+|
T Consensus 101 ~~elrk~IG~-vS~~L~~~~~-~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 101 IFELRKRIGL-VSSELHERFR-VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred hHHHHHHhCc-cCHHHHhhcc-cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHH
Confidence 0122333 110 000000 0011111110 0111223322 2 2334556788888776 57888999999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+.|||||+.+|++||||||+.|||...++.+.+.|.+.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~ 217 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764
No 247
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=2.7e-29 Score=217.57 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=105.5
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEecCCCCCCCccCCcccCh
Q 025293 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (255)
Q Consensus 95 l~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~ 173 (255)
.+++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++. .+. +..... + ...+++.+++
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~I~~~g~-----~~~-~~~~~~-~-~~~~tv~enl 106 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGKVDRNGE-----VSV-IAISAG-L-SGQLTGIENI 106 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCE-----EeE-EecccC-C-CCCCcHHHHH
Confidence 36699999999999999999999999999999999998 89997 33332 111 111111 1 1123554444
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293 174 KEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll 251 (255)
.......+............+++.+++. .+..+..||+||+||+++|++++.+|++||+||||++||+..+..+.+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L 186 (264)
T PRK13546 107 EFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI 186 (264)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 3322222221111112234455555554 35677899999999999999999999999999999999999999999988
Q ss_pred Hh
Q 025293 252 DE 253 (255)
Q Consensus 252 ~~ 253 (255)
.+
T Consensus 187 ~~ 188 (264)
T PRK13546 187 YE 188 (264)
T ss_pred HH
Confidence 65
No 248
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.9e-29 Score=215.68 Aligned_cols=171 Identities=13% Similarity=0.119 Sum_probs=120.4
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCCc-cCCCCCC----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~--~~p~~G~-~~~~~~~---- 147 (255)
|-+|+++||++.|++ +. +++|+||+|.+||+++|+|+||||||||+++|+|++.. ..|++|+ .+++...
T Consensus 1 ~~~l~~~~v~~~~~~--~~--~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 1 MYRIEVENLNTYFDD--AH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred CcEEEEEeEEEEeCC--eE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 447899999999986 34 55999999999999999999999999999999998630 0137898 4444221
Q ss_pred ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k 214 (255)
....++ +..+.. .+. .++.+++.+.....+... ......+.+.++.+++. .+..+..||+||+
T Consensus 77 ~~~~~~~~~i~~-~~q~~~-~~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 77 VDVVELRKKVGM-VFQKPN-PFP--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQ 152 (250)
T ss_pred ccHHHHhhheEE-EecCCc-cCc--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHH
Confidence 112444 333322 111 244444433222222111 11122345566666542 3566789999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 191 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK 191 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875
No 249
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.2e-29 Score=238.06 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=121.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEE
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL 155 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i 155 (255)
||+++||++.|++ ++ +|+|+||+|++|++++|+||||||||||||+|+|+++ |++|+ .+++. ..+|+ +
T Consensus 1 ml~i~~ls~~~~~--~~--il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~-~ 69 (530)
T PRK15064 1 MLSTANITMQFGA--KP--LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGK-L 69 (530)
T ss_pred CEEEEEEEEEeCC--cE--eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEE-E
Confidence 4899999999986 34 5599999999999999999999999999999999998 99998 44432 23554 4
Q ss_pred ecCCCCCCCccCCcccChHHHHH-----------hcCCCC---------------------CccHHHHHHHHHhhcccC-
Q 025293 156 PMDGFHLYLSQLDAMEDPKEAHA-----------RRGAPW---------------------TFNPLLLLNCLKNLRNQG- 202 (255)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~---------------------~~~~~~~~~~l~~l~~~~- 202 (255)
.+....+ ..+++.+++.+... ....+. ......+..+++.+++..
T Consensus 70 ~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 70 RQDQFAF--EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred eccCCcC--CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 4332211 12344444332110 000000 001234567788888753
Q ss_pred --CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 203 --SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 203 --~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+.++..|||||+||+++|++|+.+|++|||||||++||+.++..+.++|.+
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 200 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE 200 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999999999999998864
No 250
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.7e-29 Score=217.35 Aligned_cols=167 Identities=14% Similarity=0.080 Sum_probs=123.1
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC--
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~-- 147 (255)
..+.++++++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|++. | ++|+ .+++...
T Consensus 7 ~~~~~~~~~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 7 IVMDCKLDKIFYGN--FM--AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred ceEEEEeEEEEeCC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEeccc
Confidence 57899999999987 33 5599999999999999999999999999999999996 5 6888 4444211
Q ss_pred --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC------CccCCCCCccc
Q 025293 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------SVYAPSFDHGV 213 (255)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~lS~G~ 213 (255)
...+++ +..+...+ . .++.+++.+.....+.. ......+.++++.+++.. +.++..||+||
T Consensus 80 ~~~~~~~~~~~i~~-v~q~~~~~-~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~ 154 (261)
T PRK14263 80 KGVDPVVVRRYIGM-VFQQPNPF-S--MSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQ 154 (261)
T ss_pred cccchHhhhhceEE-EecCCccc-c--ccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHH
Confidence 112444 33332211 1 45555554433222211 111234566777777632 35567899999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 155 ~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~ 195 (261)
T PRK14263 155 QQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL 195 (261)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999763
No 251
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=4.8e-30 Score=202.40 Aligned_cols=165 Identities=15% Similarity=0.177 Sum_probs=121.4
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC---C---
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---P--- 149 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~---~--- 149 (255)
.++++++...-++ .+ +|+++||.+.+||+++|+||+|||||||+|+++-++. |++|+ +|.++... +
T Consensus 3 lle~kq~~y~a~~--a~--il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~ 75 (223)
T COG4619 3 LLELKQVGYLAGD--AK--ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY 75 (223)
T ss_pred chHHHHHHhhcCC--Ce--eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence 4567777655555 34 4599999999999999999999999999999999998 99998 55554321 1
Q ss_pred --CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhc
Q 025293 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 150 --~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
.+.++.+.... +. -++.+|+.+.-..+. ..++......++.+++++ ..+.+..|||||+||++++|.|.
T Consensus 76 Rq~VsY~~Q~paL-fg---~tVeDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq 149 (223)
T COG4619 76 RQQVSYCAQTPAL-FG---DTVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ 149 (223)
T ss_pred HHHHHHHHcCccc-cc---cchhhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh
Confidence 11111111110 00 144444443322221 223456677888888887 46778899999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
-.|+||+|||||+.||+.+.+.+.++|.+-
T Consensus 150 ~~P~ILLLDE~TsALD~~nkr~ie~mi~~~ 179 (223)
T COG4619 150 FMPKILLLDEITSALDESNKRNIEEMIHRY 179 (223)
T ss_pred cCCceEEecCchhhcChhhHHHHHHHHHHH
Confidence 999999999999999999999999998653
No 252
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.96 E-value=3.2e-29 Score=212.39 Aligned_cols=174 Identities=17% Similarity=0.131 Sum_probs=120.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----CCC
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD 150 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----~~~ 150 (255)
++.++||++.|.+......+++|+||+|++||+++|+||||||||||+++|+|+++..-|++|+ .+++... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 5789999999965210122569999999999999999999999999999999998300037888 4444211 123
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-C--ccHHHHHH-HHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-T--FNPLLLLN-CLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~--~~~~~~~~-~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
+++ +.++...+ ..+++.++..+......... . ........ .++.+++. .+..+..||+||+||+++|++|+
T Consensus 83 i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 83 VAY-VRQDDILL--PGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred EEE-eCCCCccC--cCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 444 33332211 22466666654332221110 1 11112233 66666665 35677899999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.+|+++|+||||++||+.++..+.+++.+
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~ 188 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQ 188 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 253
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=2.2e-29 Score=239.06 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=125.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
.++|+++||++.|++ +. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++. ..+|+
T Consensus 320 ~~~l~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~~---~~i~~ 389 (552)
T TIGR03719 320 DKVIEAENLSKGFGD--KL--LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGET---VKLAY 389 (552)
T ss_pred CeEEEEeeEEEEECC--ee--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECCc---eEEEE
Confidence 358999999999986 33 5599999999999999999999999999999999998 99998 44322 24565
Q ss_pred EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcEE
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~il 230 (255)
+.++...+. ..+++.+++.+.....+... .......+++.+++. .+.++..|||||+||+++|++|+.+|++|
T Consensus 390 -v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~ll 465 (552)
T TIGR03719 390 -VDQSRDALD-PNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVL 465 (552)
T ss_pred -EeCCccccC-CCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 444321111 12455554433221111111 122345678888874 35778999999999999999999999999
Q ss_pred EEcCCCCCCChhHHHHHHHHHHh
Q 025293 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 llDep~~~LD~~~~~~l~~ll~~ 253 (255)
||||||++||+.++..+.++|.+
T Consensus 466 lLDEPt~~LD~~~~~~l~~~l~~ 488 (552)
T TIGR03719 466 LLDEPTNDLDVETLRALEEALLE 488 (552)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 254
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=1.7e-29 Score=262.39 Aligned_cols=172 Identities=15% Similarity=0.089 Sum_probs=134.4
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
..+|+++||+|.|++..+. +++|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~--aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISD 2009 (2272)
T ss_pred CceEEEEEEEEEECCCCce--EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHH
Confidence 4589999999999852122 6699999999999999999999999999999999998 99999 4544221
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
...+|+ +.+..... ..+++.+++.+....++++.......+..+++.+++. .++++..||||||||+++|+||+
T Consensus 2010 ~r~~IGy-~pQ~~~L~--~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2010 VHQNMGY-CPQFDAID--DLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred HhhhEEE-EeccccCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHh
Confidence 224666 33332222 2367777777655555654322233456678888775 46778999999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|+||||||||+|||+..++.++++|.+.
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l 2116 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSI 2116 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998763
No 255
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=2.8e-29 Score=238.48 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=125.6
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
.++|+++||++.|++ +. +|+|+||+|.+||++||+||||||||||+++|+|+++ |++|+ .++.. ..+|+
T Consensus 322 ~~~l~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~ 391 (556)
T PRK11819 322 DKVIEAENLSKSFGD--RL--LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGET---VKLAY 391 (556)
T ss_pred CeEEEEEeEEEEECC--ee--eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE
Confidence 358999999999987 33 5599999999999999999999999999999999998 99998 34322 24565
Q ss_pred EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcEE
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~il 230 (255)
+.++...+ ...+++.+++.+.....+.. ........+++.+++. .+.++..|||||+||+++|++++.+|++|
T Consensus 392 -v~q~~~~~-~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 467 (556)
T PRK11819 392 -VDQSRDAL-DPNKTVWEEISGGLDIIKVG--NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVL 467 (556)
T ss_pred -EeCchhhc-CCCCCHHHHHHhhccccccc--ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 44432111 12245555544322111111 1122345678888874 36778999999999999999999999999
Q ss_pred EEcCCCCCCChhHHHHHHHHHHh
Q 025293 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 llDep~~~LD~~~~~~l~~ll~~ 253 (255)
||||||++||+.++..+.++|.+
T Consensus 468 lLDEPt~~LD~~~~~~l~~~l~~ 490 (556)
T PRK11819 468 LLDEPTNDLDVETLRALEEALLE 490 (556)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 256
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.7e-29 Score=216.92 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=119.5
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (255)
..+|+++||++.|++ +. +++|+||+|++||+++|+|+||||||||+++|+|++. | ++|+ .+++...
T Consensus 14 ~~~l~~~~l~~~~~~--~~--vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~~~ 86 (265)
T PRK14252 14 QQKSEVNKLNFYYGG--YQ--ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDNVN 86 (265)
T ss_pred CceEEEEEEEEEECC--ee--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCcccc
Confidence 457999999999986 33 5599999999999999999999999999999999985 5 6787 4443211
Q ss_pred -----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCC
Q 025293 148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSF 209 (255)
Q Consensus 148 -----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~l 209 (255)
...+++ +...... .. .++.+++.+.....+... .........+++.+++. .+..+..|
T Consensus 87 ~~~~~~~~~~~~~~i~~-~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 162 (265)
T PRK14252 87 ILSPEVDPIEVRMRISM-VFQKPNP-FP--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNL 162 (265)
T ss_pred ccccccCHHHHhccEEE-EccCCcC-Cc--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccC
Confidence 112343 3332221 11 244444443322222211 11123344555655542 24567899
Q ss_pred CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+||+++|++|+.+|+++|+||||++||+.++..+.++|.+
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 206 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISD 206 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875
No 257
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=5.1e-30 Score=218.18 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=113.2
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
|+++|+++.|++..+. +++|+||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 i~~~~l~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 75 (234)
T cd03251 1 VEFKNVTFRYPGDGPP--VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR 75 (234)
T ss_pred CEEEEEEEEeCCCCcc--ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence 4789999999763113 5599999999999999999999999999999999998 99998 4444211 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHH---------HHHHHHhh--ccc--CCccCCCCCccccc
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL---------LLNCLKNL--RNQ--GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~l--~~~--~~~~~~~lS~G~kq 215 (255)
..+++ +..+.. +.. .++.++..... . ...... +.++++.+ ++. .+.++..||+||+|
T Consensus 76 ~~i~~-~~q~~~-~~~--~tv~enl~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~q 145 (234)
T cd03251 76 RQIGL-VSQDVF-LFN--DTVAENIAYGR-----P-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQ 145 (234)
T ss_pred hhEEE-eCCCCe-ecc--ccHHHHhhccC-----C-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHH
Confidence 12343 333221 111 23333222110 0 111111 12333333 121 34567899999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++|+.+|+++|+||||++||+.++..+.+++.+.
T Consensus 146 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 184 (234)
T cd03251 146 RIAIARALLKDPPILILDEATSALDTESERLVQAALERL 184 (234)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998753
No 258
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=7.3e-29 Score=207.02 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=108.6
Q ss_pred EEecCchheehhhh---cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293 78 VEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 78 l~v~~lsk~y~~~~---~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
|+++||++.|++.. +. +++|+||+|++|++++|+||||||||||+++|+|+.+ |++|+ .+++ .+++
T Consensus 1 l~~~~l~~~~~~~~~~~~~--il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~~ 70 (204)
T cd03250 1 ISVEDASFTWDSGEQETSF--TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIAY 70 (204)
T ss_pred CEEeEEEEecCCCCccccc--eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEEE
Confidence 47899999997631 13 5699999999999999999999999999999999998 99998 4443 3444
Q ss_pred EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc-------------cCCccCCCCCcccccchhhh
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lS~G~kqrv~la 220 (255)
+..+...+. .++.++..+ ............++.+++ ........||+||+||+++|
T Consensus 71 -~~q~~~l~~---~t~~enl~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~la 139 (204)
T cd03250 71 -VSQEPWIQN---GTIRENILF-------GKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLA 139 (204)
T ss_pred -EecCchhcc---CcHHHHhcc-------CCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHH
Confidence 333322111 233332221 111111122222222211 12345678999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHH-HHH
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSS-MFD 252 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~-ll~ 252 (255)
++++.+|+++|+||||++||+..++.+.+ ++.
T Consensus 140 ral~~~p~llllDEP~~~LD~~~~~~l~~~ll~ 172 (204)
T cd03250 140 RAVYSDADIYLLDDPLSAVDAHVGRHIFENCIL 172 (204)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998887 443
No 259
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.3e-29 Score=215.56 Aligned_cols=168 Identities=12% Similarity=0.077 Sum_probs=118.7
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCCc-cCCCCCC-------
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~--~~p~~G~-~~~~~~~------- 147 (255)
-+++||++.|++ +. +++|+||+|.+||+++|+|+||||||||+++|+|+.+. ..|++|+ .+++...
T Consensus 6 ~~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGS--KQ--ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECC--ee--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 368999999976 33 55999999999999999999999999999999999730 0026888 4443211
Q ss_pred ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC--ccHHHHHHHHHhhccc------CCccCCCCCcccccc
Q 025293 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (255)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~------~~~~~~~lS~G~kqr 216 (255)
....++ +.++...+. .++.++..+.....+.... .....+.++++.+++. .+..+..||+||+||
T Consensus 82 ~~~~~~i~~-v~q~~~~~~---~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 82 VLLRAKVGM-VFQKPNPFP---KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR 157 (251)
T ss_pred HHHhhhEEE-EecCccccc---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence 112444 343322111 1444444433222221111 1122345677888764 245678999999999
Q ss_pred hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875
No 260
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.5e-29 Score=237.04 Aligned_cols=164 Identities=14% Similarity=0.086 Sum_probs=120.6
Q ss_pred ecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------CC
Q 025293 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------PP 149 (255)
Q Consensus 80 v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---------~~ 149 (255)
++||++.|++ +. +++|+||+|++||++||+||||||||||+++|+|+++ |++|+ .+++... ..
T Consensus 1 ~~nl~~~~~~--~~--il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPG--VK--ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCC--EE--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence 4789999986 33 5599999999999999999999999999999999998 99999 4554321 12
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHH-hcCC--CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA--PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
.+++ +.++.... ..+++.+++.+... ..+. ........+..+++.+++. .+.++..|||||+|||++|++|+
T Consensus 74 ~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 74 GISM-VHQELNLV--LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred CEEE-Eecccccc--cCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 3455 44332211 12455554433211 0111 1111123456777877775 35678899999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||+||||++||+.++..+.++|.+
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 179 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999865
No 261
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.2e-29 Score=204.82 Aligned_cols=169 Identities=14% Similarity=0.176 Sum_probs=119.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeE---
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA--- 152 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g--- 152 (255)
|++++||+|.|++ +. +++++|++|++|.+++|+|||||||||||.+++.+++ +++|+ .+++.....+.+
T Consensus 1 MI~i~nv~K~y~~--~~--vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 1 MITIENVSKSYGT--KV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL 73 (252)
T ss_pred CeeehhhhHhhCC--EE--eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence 5899999999998 44 4599999999999999999999999999999999997 78886 333321110000
Q ss_pred ----EEEecCCCCCCCccCCcccChHHHHH--hcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293 153 ----TVLPMDGFHLYLSQLDAMEDPKEAHA--RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 153 ----~~i~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
.++.+.+.. ...+++.+.+.|.+- ..|-+...+...+.+.++.+.+. .+++..+|||||+||..+|+.++
T Consensus 74 Ak~lSILkQ~N~i--~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 74 AKKLSILKQENHI--NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHHHHHhhchh--hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee
Confidence 001111110 111233322222111 01111223344456777777776 57888999999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+.+.++||||.+.||.....+++++++..
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrl 181 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRL 181 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999988754
No 262
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.8e-29 Score=212.17 Aligned_cols=162 Identities=19% Similarity=0.196 Sum_probs=111.8
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++|+++.|++. +. +++|+||+|++|++++|+|||||||||||++|+|+++ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~~~~~-~~--~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 2 EIEFENVNFSYDEK-KP--VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL 75 (229)
T ss_pred eEEEEEEEEecCCC-Cc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence 37899999999742 23 5599999999999999999999999999999999998 99998 4444211
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc-----------c--CCccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-----------Q--GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-----------~--~~~~~~~lS~G~k 214 (255)
...+++ +..+.. +.. .++.++... . ........+...++.+++ . ...++..||+||+
T Consensus 76 ~~~i~~-~~q~~~-~~~--~tv~~~~~~-----~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~ 145 (229)
T cd03254 76 RSMIGV-VLQDTF-LFS--GTIMENIRL-----G-RPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGER 145 (229)
T ss_pred hhhEEE-ecCCch-hhh--hHHHHHHhc-----c-CCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHH
Confidence 112343 222211 111 122222111 0 011111222222222221 1 2345789999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++|+.+|+++|+||||++||+.+++.+.+++.+.
T Consensus 146 ~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (229)
T cd03254 146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL 185 (229)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998753
No 263
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.96 E-value=2.1e-29 Score=236.65 Aligned_cols=173 Identities=13% Similarity=0.107 Sum_probs=122.6
Q ss_pred CeEEecCchheehhh-hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCc-cCCCCCC-----
Q 025293 76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~-~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-~~G~-~~~~~~~----- 147 (255)
.+|+++|+++.|+.. .+. +++|+||+|.+||++||+||||||||||+|+|+|+++ | ++|+ .+++...
T Consensus 256 ~~l~~~~l~~~~~~~~~~~--~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRK--RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCccccccccccc--ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCCCH
Confidence 479999999999421 123 5699999999999999999999999999999999996 6 7998 4444211
Q ss_pred ----CCCeEEEEecCCC-CCCCccCCcccChHHHHH-hc-C---CCCCccHHHHHHHHHhhccc---CCccCCCCCcccc
Q 025293 148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR-G---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~k 214 (255)
...+|+ +.++.. ......+++.++..+... .. . .........+.++++.+++. .+.++..||||||
T Consensus 331 ~~~~~~~i~~-v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 331 AQAIRAGIAM-VPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred HHHHhCCCEE-cCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHH
Confidence 112454 333310 001112344444332110 11 1 01111123456788888884 3577889999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++|+.+|++|||||||++||+.++..+.+++.+.
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 449 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL 449 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988653
No 264
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=2e-29 Score=236.17 Aligned_cols=172 Identities=16% Similarity=0.021 Sum_probs=119.9
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCc-cCCCCCC-----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK----- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-~~G~-~~~~~~~----- 147 (255)
.++|+++|+++.|++ +. +++|+||+|++||++||+||||||||||+|+|+|+.+ | ++|+ .+++...
T Consensus 258 ~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 258 EPRIVLNNGVVSYND--RP--ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred CceEEEeceEEEECC--ee--EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence 468999999999986 33 5599999999999999999999999999999999874 4 5898 4444211
Q ss_pred ----CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCC---CCccHHHHHHHHHhhcccC---CccCCCCCcccccc
Q 025293 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAP---WTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDP 216 (255)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~kqr 216 (255)
...+|+ +.+..........+..+........ .+.. .......+.++++.+++.. +.++..||||||||
T Consensus 331 ~~~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 409 (490)
T PRK10938 331 IWDIKKHIGY-VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL 409 (490)
T ss_pred HHHHHhhceE-ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH
Confidence 112344 3322111010001111111100000 0111 1111234567888888753 56788999999999
Q ss_pred hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l 447 (490)
T PRK10938 410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVL 447 (490)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998763
No 265
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=7.3e-29 Score=235.50 Aligned_cols=165 Identities=16% Similarity=0.060 Sum_probs=121.4
Q ss_pred CeEEecCchheeh-hhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 76 ~~l~v~~lsk~y~-~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
.+|+++||+++|+ + +. +|+|+||+|++|++++|+|||||||||||++|+|+++ |++|+ .++. ...+|+
T Consensus 3 ~~i~~~nls~~~~~~--~~--il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~---~~~i~~ 72 (552)
T TIGR03719 3 YIYTMNRVSKVVPPK--KE--ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAP---GIKVGY 72 (552)
T ss_pred EEEEEeeEEEecCCC--Ce--eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEEE
Confidence 3799999999997 4 33 5599999999999999999999999999999999998 99998 3432 224555
Q ss_pred EEecCCCCCCCccCCcccChHHHHHh--------------cCCCCCc----------------------cHHHHHHHHHh
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLKN 197 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~~~~~----------------------~~~~~~~~l~~ 197 (255)
+.+..... ..+++.+++.+.... ....... ....+..+++.
T Consensus 73 -v~Q~~~~~--~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 73 -LPQEPQLD--PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred -EeccCCCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 44432211 124665555432110 0111010 01123445666
Q ss_pred hccc-CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 198 LRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 198 l~~~-~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++. .+.++..||||||||+++|++|+.+|++|||||||++||+.++..+.++|.+
T Consensus 150 ~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~ 206 (552)
T TIGR03719 150 LRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE 206 (552)
T ss_pred CCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh
Confidence 6653 3567889999999999999999999999999999999999999999999865
No 266
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=6.7e-29 Score=239.10 Aligned_cols=166 Identities=14% Similarity=0.034 Sum_probs=119.6
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
|.+|+++||++.|++ +. +|+|+||+|++|+++||+||||||||||||+|+|+++ |++|+ .+++.. ..+.
T Consensus 1 m~~l~i~~ls~~~~~--~~--il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~---~~~~ 70 (635)
T PRK11147 1 MSLISIHGAWLSFSD--AP--LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDL---IVAR 70 (635)
T ss_pred CcEEEEeeEEEEeCC--ce--eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCC---EEEE
Confidence 458999999999987 34 5599999999999999999999999999999999998 99998 343321 1222
Q ss_pred EEecCCCCCCCccCCcccCh------------------------------HHHHHh---cC-CCCCccHHHHHHHHHhhc
Q 025293 154 VLPMDGFHLYLSQLDAMEDP------------------------------KEAHAR---RG-APWTFNPLLLLNCLKNLR 199 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~------------------------------~~~~~~---~~-~~~~~~~~~~~~~l~~l~ 199 (255)
+.+.... ....++.+.. ...... .. .........+..+++.++
T Consensus 71 -l~q~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 71 -LQQDPPR--NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG 147 (635)
T ss_pred -eccCCCC--CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence 1111100 0000111100 000000 00 000111234667888888
Q ss_pred ccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 200 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 200 ~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+..+.++..|||||+|||++|++|+.+|+||||||||++||+.++..+.++|.+
T Consensus 148 l~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~ 201 (635)
T PRK11147 148 LDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT 201 (635)
T ss_pred CCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHh
Confidence 877888999999999999999999999999999999999999999999999865
No 267
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.9e-29 Score=218.69 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=122.0
Q ss_pred CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC---
Q 025293 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK--- 147 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~--- 147 (255)
...+|+++||++.|++ +. +|+++||+|.+|++++|+|+||||||||+++|+|+++.. .|++|+ .+++...
T Consensus 42 ~~~~l~i~nl~~~~~~--~~--iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~ 117 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD--DH--ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD 117 (305)
T ss_pred CCceEEEEEEEEEeCC--ee--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 3458999999999986 33 559999999999999999999999999999999997400 147898 4443211
Q ss_pred -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC------------CCC-CccHHHHHHHHHhhccc------
Q 025293 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------APW-TFNPLLLLNCLKNLRNQ------ 201 (255)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~l~~l~~~------ 201 (255)
...+++ +..+.. ++. .++.+++.+.....+ ... ......+.++++.+++.
T Consensus 118 ~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 193 (305)
T PRK14264 118 GVNLVELRKRVGM-VFQSPN-PFP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR 193 (305)
T ss_pred cccHHHHhhceEE-EccCCc-ccc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH
Confidence 112344 333221 111 255555443222111 000 01122345666666652
Q ss_pred CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 202 ~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+.++..||+||+||+++|++|+.+|+|||+||||++||+.++..+.++|.+.
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~ 246 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL 246 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 25667899999999999999999999999999999999999999999998753
No 268
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=4.8e-29 Score=230.74 Aligned_cols=166 Identities=15% Similarity=0.121 Sum_probs=120.7
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (255)
++++++||++.|++.. ...+|+|+||+|.+|+++||+|||||||||||++|+|+++ |++|+ .+++... .
T Consensus 20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-----~- 89 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-----L- 89 (549)
T ss_pred ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee-----e-
Confidence 4789999999997632 1125699999999999999999999999999999999998 89998 3443210 1
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEE
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illl 232 (255)
+.+... ....+++.+++.+.....+............+++.+++. .+.++..|||||+||+++|++|+.+|++|||
T Consensus 90 i~~~~~--l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLL 167 (549)
T PRK13545 90 IAISSG--LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVI 167 (549)
T ss_pred EEeccc--cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 111111 111245555544322222221111122345677777764 4577889999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHh
Q 025293 233 DGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 233 Dep~~~LD~~~~~~l~~ll~~ 253 (255)
||||++||+..+..+.++|.+
T Consensus 168 DEPTsgLD~~sr~~LlelL~e 188 (549)
T PRK13545 168 DEALSVGDQTFTKKCLDKMNE 188 (549)
T ss_pred ECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999865
No 269
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.3e-29 Score=238.30 Aligned_cols=163 Identities=17% Similarity=0.072 Sum_probs=118.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEE
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL 155 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i 155 (255)
||+++||+++|++ +. +|+|+||+|.+|+++||+||||||||||||+|+|+++ |++|+ .+++. ..+|+ +
T Consensus 1 ~i~i~nls~~~g~--~~--~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~---~~i~~-~ 69 (638)
T PRK10636 1 MIVFSSLQIRRGV--RV--LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGN---WQLAW-V 69 (638)
T ss_pred CEEEEEEEEEeCC--ce--eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEE-E
Confidence 5889999999987 34 4599999999999999999999999999999999988 99998 34432 12333 3
Q ss_pred ecCCCCCCCccCCcccChH-----------------------HHHHhcC----CCCCccHHHHHHHHHhhccc---CCcc
Q 025293 156 PMDGFHLYLSQLDAMEDPK-----------------------EAHARRG----APWTFNPLLLLNCLKNLRNQ---GSVY 205 (255)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~-----------------------~~~~~~~----~~~~~~~~~~~~~l~~l~~~---~~~~ 205 (255)
.+...... .+....+. ......+ .........+..+++.+++. .+.+
T Consensus 70 ~q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 70 NQETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred ecCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 32211110 01111000 0000000 00011123566788888885 3678
Q ss_pred CCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 206 ~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+..|||||+|||++|++|+.+|++|||||||++||+.+...+.++|.+
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~ 194 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS 194 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999998864
No 270
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.96 E-value=6.3e-29 Score=212.08 Aligned_cols=162 Identities=17% Similarity=0.155 Sum_probs=110.9
Q ss_pred EEecCchheehhhh-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 78 VEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 78 l~v~~lsk~y~~~~-~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
++++|+++.|++.. +. +++|+||+|++|++++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 l~i~~l~~~~~~~~~~~--~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPSRPDVP--ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCCCCCcc--ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHH
Confidence 46899999996421 22 5599999999999999999999999999999999998 99998 4544221
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHH---------HHHHhh--cc--cCCccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNL--RN--QGSVYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~l--~~--~~~~~~~~lS~G~k 214 (255)
....++ +..+.. +.. .++.+++.+ .... ....... ++++.+ ++ ....++..||+||+
T Consensus 76 ~~~i~~-~~q~~~-~~~--~tv~e~l~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 145 (238)
T cd03249 76 RSQIGL-VSQEPV-LFD--GTIAENIRY-----GKPD-ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQK 145 (238)
T ss_pred HhhEEE-ECCchh-hhh--hhHHHHhhc-----cCCC-CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHH
Confidence 112343 222211 111 132222211 0010 1111111 122222 11 13455789999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus 146 qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 185 (238)
T cd03249 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA 185 (238)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998753
No 271
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.5e-29 Score=211.92 Aligned_cols=174 Identities=15% Similarity=0.079 Sum_probs=123.4
Q ss_pred CeEEecCchheehh-----------------hhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC
Q 025293 76 PVVEARCMDEVYDA-----------------LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 138 (255)
Q Consensus 76 ~~l~v~~lsk~y~~-----------------~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~ 138 (255)
.++.++||+|.|.- ..+.+.++.|+||+|++|+++|++|+|||||||+||+|+|++. |++
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~ 78 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTS 78 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCC
Confidence 46777888777731 1123557799999999999999999999999999999999997 998
Q ss_pred Cc-cCCCCC-CC------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCC
Q 025293 139 AS-SFDSQV-KP------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS 208 (255)
Q Consensus 139 G~-~~~~~~-~~------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~ 208 (255)
|. .+++.. .. ...+. .+..+.+..-+++..+.....+..+.++.+.-......+-+.+++. .+.++..
T Consensus 79 G~v~V~G~~Pf~~~~~~~~~~~~--v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~ 156 (325)
T COG4586 79 GKVRVNGKDPFRRREEYLRSIGL--VMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRK 156 (325)
T ss_pred CeEEecCcCcchhHHHHHHHHHH--HhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhh
Confidence 87 333321 11 01111 1111111111233444444445555555433334444555556665 6778899
Q ss_pred CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||-|||.|+.+|.+|.++|+||+|||||.|||...+..+++++++.
T Consensus 157 LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~ 202 (325)
T COG4586 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202 (325)
T ss_pred ccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999763
No 272
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=6.4e-29 Score=258.10 Aligned_cols=172 Identities=15% Similarity=0.176 Sum_probs=134.7
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
...|+++||+|.|++..+. +++|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 926 ~~~L~I~nLsK~y~~~~k~--aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRP--AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred CceEEEEeEEEEecCCCce--EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHHH
Confidence 3589999999999632133 5699999999999999999999999999999999998 99999 4544321
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
+...|. +.+..... ..+++.+++.+.....+.........+.++++.+++. .+.++..||||||||+++|+||+
T Consensus 1001 ~r~~IG~-~pQ~~~L~--~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1001 VRQSLGM-CPQHNILF--HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred HhhcEEE-EecCCcCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 123565 44433222 2368888877765555543222334567788888876 46778899999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|++|||||||++||+.+++.++++|.+.
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999763
No 273
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.96 E-value=4.9e-29 Score=239.69 Aligned_cols=163 Identities=15% Similarity=0.061 Sum_probs=120.6
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
-++++||++.|+..... +|+|+|++|++||++||+|+||||||||+|+|.|+.. |+.|+ .+++...
T Consensus 471 ~I~~~nvsf~y~~~~~~--vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 471 EIEFENVSFRYGPDDPP--VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred eEEEEEEEEEeCCCCcc--hhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence 59999999999875333 5599999999999999999999999999999999998 99998 5555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------ccCC----ccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~lS~G~k 214 (255)
+..+|+ +.++++.+.. +..+|... + .++...+.+.++++.-+ .+.+ .....||||||
T Consensus 546 R~~ig~-V~Q~~~Lf~g---SI~eNi~l-----~-~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 546 RRQVGY-VLQDPFLFSG---SIRENIAL-----G-NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred HhheeE-EcccchhhcC---cHHHHHhc-----C-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 344665 6666654432 33332211 1 12223334433333322 2222 23457999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++||++..+|+||||||||+.||+.+.+.+.+-+.+.
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~ 655 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI 655 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988753
No 274
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.95 E-value=4.3e-29 Score=197.58 Aligned_cols=115 Identities=18% Similarity=0.246 Sum_probs=95.4
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
++++|+++.|++ .. +++++||++++||+++|+|+||||||||+++|+|+++ |++| . +.+
T Consensus 1 l~~~~l~~~~~~--~~--~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G-------------~-i~~ 59 (144)
T cd03221 1 IELENLSKTYGG--KL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEG-------------I-VTW 59 (144)
T ss_pred CEEEEEEEEECC--ce--EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCce-------------E-EEE
Confidence 468899999976 33 5599999999999999999999999999999999996 6555 3 333
Q ss_pred CCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCC
Q 025293 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (255)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~ 237 (255)
++.. ..++ +++||+||+||+++|++++.+|+++|+|||++
T Consensus 60 ~~~~-----------------~i~~-----------------------~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 60 GSTV-----------------KIGY-----------------------FEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCeE-----------------EEEE-----------------------EccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3310 0111 00099999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHh
Q 025293 238 FLDGGVWKDVSSMFDE 253 (255)
Q Consensus 238 ~LD~~~~~~l~~ll~~ 253 (255)
+||+.++..+.+++.+
T Consensus 100 ~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 100 HLDLESIEALEEALKE 115 (144)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999865
No 275
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.95 E-value=1.6e-28 Score=232.14 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=120.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------C
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~ 148 (255)
.|+++||+++|++. ++ +|+|+||+|++|++++|+||||||||||+++|+|+.+ |++|+ .+++... +
T Consensus 334 ~I~~~~vsf~Y~~~-~~--vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGS-PP--VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred eEEEEEEEEecCCC-Cc--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence 58999999999753 23 5599999999999999999999999999999999998 99998 4554221 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCccccc
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~kq 215 (255)
..+++ +.++.+-+. -+..+|+.+ + .++...+++.++++..++. .+. ....|||||||
T Consensus 408 ~~i~~-V~Q~~~lF~---~TI~eNI~~-----g-~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ 477 (529)
T TIGR02868 408 RRISV-FAQDAHLFD---TTVRDNLRL-----G-RPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ 477 (529)
T ss_pred hheEE-EccCccccc---ccHHHHHhc-----c-CCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence 23454 566555433 133333322 1 1223445555666654432 222 23469999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+++||++..+|+|||+||||++||+.+.+.+.+.+.+
T Consensus 478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988865
No 276
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.8e-28 Score=218.60 Aligned_cols=172 Identities=14% Similarity=0.115 Sum_probs=121.4
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC-----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~----- 147 (255)
.+|+++|+++.|.+..+. +|+|+||+|++||++||+|+||||||||+++|+|+.... .|++|+ .+++...
T Consensus 79 ~~i~~~nls~~y~~~~~~--~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKH--VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEecCCCce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 589999999999642223 569999999999999999999999999999999998400 046888 4443321
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCcc-HHHHHHHHHhhccc------CCccCCCCCccccc
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~------~~~~~~~lS~G~kq 215 (255)
....++ +.++...+ . .++.+++.+.....+...... ......+++.+++. ...+...|||||+|
T Consensus 157 ~~~~lr~~i~~-v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 157 SSLELRTRIGM-VFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred chHhhhccEEE-EecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 123444 43333222 1 355566554332222211111 11234556666542 35677899999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|||++.+|+|||+||||++||+.+...+.++|.+
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~ 270 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILE 270 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998865
No 277
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=1.7e-28 Score=233.68 Aligned_cols=158 Identities=13% Similarity=0.088 Sum_probs=122.0
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-CCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (255)
.++++++|+++.|++ . .|+++||+|++||++||+||||||||||+|+|+|+++ |++|++ ++ ..+++
T Consensus 338 ~~~l~~~~ls~~~~~--~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i~y 404 (590)
T PRK13409 338 ETLVEYPDLTKKLGD--F---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKISY 404 (590)
T ss_pred ceEEEEcceEEEECC--E---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeEEE
Confidence 468999999999976 2 3599999999999999999999999999999999998 999973 32 13444
Q ss_pred EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEE
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ill 231 (255)
+.+.... ...+++.+++....... . ......++++.+++. .+.++..|||||+|||++|++|+.+|++||
T Consensus 405 -~~Q~~~~--~~~~tv~e~l~~~~~~~--~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llL 476 (590)
T PRK13409 405 -KPQYIKP--DYDGTVEDLLRSITDDL--G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYL 476 (590)
T ss_pred -ecccccC--CCCCcHHHHHHHHhhhc--C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3332211 12245555444321111 1 122346778888775 467889999999999999999999999999
Q ss_pred EcCCCCCCChhHHHHHHHHHHh
Q 025293 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||||++||+.++..+.++|.+
T Consensus 477 LDEPt~~LD~~~~~~l~~~l~~ 498 (590)
T PRK13409 477 LDEPSAHLDVEQRLAVAKAIRR 498 (590)
T ss_pred EeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 278
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.8e-28 Score=192.89 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=125.8
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc--cC--CCCC----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SF--DSQV---- 146 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~--~~--~~~~---- 146 (255)
.+.+++.+++|.|+... ..+||||++.+||++||+|++||||||||++|++-+. |+.|+ +. ++..
T Consensus 4 ~PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 4 KPLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred CcceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHh
Confidence 36899999999999843 4599999999999999999999999999999999998 99998 21 1111
Q ss_pred ----------CCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhcccC---CccCCCCCcc
Q 025293 147 ----------KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG---SVYAPSFDHG 212 (255)
Q Consensus 147 ----------~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G 212 (255)
.+.++|. +.++..+--....+...|+-+..-..|.. .........++++.+.+.. +-.+..||||
T Consensus 77 ~msEaeRR~L~RTeWG~-VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 77 TMSEAERRRLLRTEWGF-VHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hhchHHHHHHhhhccce-eecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 1345675 55443322221122233333222222210 0112234567888888774 3457799999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+.||+.|+..|+++++||||-|||...+..+.+++.-.
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgL 197 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGL 197 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988643
No 279
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.1e-28 Score=226.19 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=129.9
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCC----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP---- 149 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~---- 149 (255)
+++++++|++|+|++.. +|+++||++.+||++||+|.||||||||+|+|+|.++ |++|+ .++++....
T Consensus 6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence 46899999999999843 7799999999999999999999999999999999998 99999 566543211
Q ss_pred ---CeEE-EEecCCCCCCCccCCcccChHHHHHhc---CC-CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293 150 ---DVAT-VLPMDGFHLYLSQLDAMEDPKEAHARR---GA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 150 ---~~g~-~i~~~~~~~~~~~l~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l 219 (255)
..|. +|++.--.. +++++.+|+...+... ++ ...........+++.+++. .+..+..||.||||-|+|
T Consensus 79 ~A~~~GI~~V~QEl~L~--p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 79 DALAAGIATVHQELSLV--PNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred HHHhCCcEEEeechhcc--CCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence 1232 133322211 2367766664433221 21 1111223456778877764 667889999999999999
Q ss_pred hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+|+..+++||||||||+.|+....+.+.+++.+.
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~L 191 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRL 191 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988753
No 280
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.3e-28 Score=209.73 Aligned_cols=161 Identities=15% Similarity=0.168 Sum_probs=110.6
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
|+++|+++.|++. +. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 l~~~~l~~~~~~~-~~--~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~~ 74 (236)
T cd03253 1 IEFENVTFAYDPG-RP--VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSLR 74 (236)
T ss_pred CEEEEEEEEeCCC-Cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHHH
Confidence 4689999999631 23 5599999999999999999999999999999999998 99998 4444211 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHH---------HHHHhhccc----CCccCCCCCccccc
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNLRNQ----GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~l~~~----~~~~~~~lS~G~kq 215 (255)
...++ +..+.. +.. .++.+++.+. .. ........ ..++.+... ...++..||+||+|
T Consensus 75 ~~i~~-~~q~~~-~~~--~tv~~nl~~~-----~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~ 144 (236)
T cd03253 75 RAIGV-VPQDTV-LFN--DTIGYNIRYG-----RP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQ 144 (236)
T ss_pred hhEEE-ECCCCh-hhc--chHHHHHhhc-----CC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHH
Confidence 12343 322221 111 2333322111 01 11111111 122222111 23456789999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++|+.+|+++|+||||++||+.++..+.++|.+.
T Consensus 145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 183 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV 183 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998653
No 281
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.6e-28 Score=230.20 Aligned_cols=168 Identities=13% Similarity=0.128 Sum_probs=118.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (255)
.++|+++||++.|. . +++++||+|++||++||+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 248 ~~~i~~~~l~~~~~----~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 248 EVILEVRNLTSLRQ----P--SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNAN 318 (491)
T ss_pred CcEEEEeCcccccC----c--ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHH
Confidence 35899999999842 2 5699999999999999999999999999999999998 99999 45542211
Q ss_pred ----CCeEEEEecCCC--CCCCccCCcccC-----hHHHHHhcCC-CCCccHHHHHHHHHhhccc---CCccCCCCCccc
Q 025293 149 ----PDVATVLPMDGF--HLYLSQLDAMED-----PKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (255)
Q Consensus 149 ----~~~g~~i~~~~~--~~~~~~l~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~ 213 (255)
...++ +..+.. .++ ..++..++ ........+. ........+..+++.+++. .+.++..|||||
T Consensus 319 ~~~~~~i~~-~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 396 (491)
T PRK10982 319 EAINHGFAL-VTEERRSTGIY-AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGN 396 (491)
T ss_pred HHHHCCCEE-cCCchhhCCcc-cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHH
Confidence 11333 222210 001 11222111 1110000111 1111123456777777773 367889999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++|++++.+|+||||||||++||+.++..+.+++.+
T Consensus 397 ~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~ 436 (491)
T PRK10982 397 QQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE 436 (491)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999865
No 282
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=5.1e-28 Score=203.90 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=107.4
Q ss_pred EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C--------
Q 025293 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-------- 148 (255)
Q Consensus 79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-------- 148 (255)
.+.|+.+.|++. .. +++|+||+|++|++++|+|||||||||||++|+|+++ |++|+ .+++... .
T Consensus 2 ~~~~~~~~~~~~-~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (218)
T cd03290 2 QVTNGYFSWGSG-LA--TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS 75 (218)
T ss_pred eeeeeEEecCCC-Cc--ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence 467899999753 23 5699999999999999999999999999999999998 99998 4444311 0
Q ss_pred ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCcc
Q 025293 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHG 212 (255)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G 212 (255)
...++ +..+.. +.. .++.+++.. ...........+++.+++. ...++..||+|
T Consensus 76 ~~~~~i~~-~~q~~~-~~~--~t~~~nl~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G 144 (218)
T cd03290 76 RNRYSVAY-AAQKPW-LLN--ATVEENITF-------GSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGG 144 (218)
T ss_pred hhcceEEE-EcCCCc-ccc--ccHHHHHhh-------cCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHH
Confidence 11333 222221 111 233332221 1111112223333333321 13467899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ 249 (255)
|+||+++|++++.+|++||+||||++||+.++..+.+
T Consensus 145 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 181 (218)
T cd03290 145 QRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQ 181 (218)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHH
Confidence 9999999999999999999999999999999998887
No 283
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.95 E-value=1.7e-28 Score=210.94 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=113.9
Q ss_pred EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-------C
Q 025293 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-------P 149 (255)
Q Consensus 79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-------~ 149 (255)
+++||++. . +|+|+||+|++|++++|+|+||||||||+++|+|++ |.+|+ .+++... . .
T Consensus 2 ~~~~l~~~--~------~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~----~~~G~i~~~g~~i~~~~~~~~~~ 69 (248)
T PRK03695 2 QLNDVAVS--T------RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAGQPLEAWSAAELAR 69 (248)
T ss_pred cccccchh--c------eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC----CCCeEEEECCEecCcCCHHHHhh
Confidence 57888874 1 569999999999999999999999999999999998 66898 4544321 1 1
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhcc--
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL-- 225 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~-- 225 (255)
..++ +.+...... .+++.++..+... ...........+.++++.+++.. +..+..||+||+||+++|++|+.
T Consensus 70 ~i~~-v~q~~~~~~--~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~ 145 (248)
T PRK03695 70 HRAY-LSQQQTPPF--AMPVFQYLTLHQP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVW 145 (248)
T ss_pred heEE-ecccCccCC--CccHHHHHHhcCc-cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 2344 333221111 1344443332211 11111111234567888887753 57788999999999999999997
Q ss_pred -----CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 226 -----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 -----~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++||+||||++||+..+..+.+++.+.
T Consensus 146 ~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~ 179 (248)
T PRK03695 146 PDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL 179 (248)
T ss_pred cccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 67999999999999999999999998753
No 284
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-28 Score=229.83 Aligned_cols=164 Identities=17% Similarity=0.162 Sum_probs=118.1
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
-.|+++||+|.|...+ .+.+|+|+||+|++||++|||||||+||||+.++|..+.. |++|+ .+++...
T Consensus 464 G~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~ 539 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKY 539 (716)
T ss_pred ceEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHH
Confidence 3699999999998742 4456799999999999999999999999999999999998 99998 4555322
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHH---------HHHhhcccCC----ccCCCCCccc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRNQGS----VYAPSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~l~~~~~----~~~~~lS~G~ 213 (255)
+..+|. +.+....+. -++.+|+.+ |.. ....++++. .+.++-.+-+ .+..+|||||
T Consensus 540 lr~~Ig~-V~QEPvLFs---~sI~eNI~Y-----G~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 540 LRRKIGL-VGQEPVLFS---GSIRENIAY-----GLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred HHHHeee-eeccceeec---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 123444 333322111 133333322 222 223333332 2223322222 3345899999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||+||||||+.+|.||||||-|+.||.++...+.+.++.
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~ 649 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDR 649 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999988864
No 285
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.1e-28 Score=193.51 Aligned_cols=173 Identities=18% Similarity=0.168 Sum_probs=126.0
Q ss_pred CeEEecCchheehhhh---cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc--CC-CCC---
Q 025293 76 PVVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FD-SQV--- 146 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~---~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~--~~-~~~--- 146 (255)
..|.++|++|+|--.. -.+.+++|+||+++.||++++-||+|+|||||||+|.|.+. |++|++ .. +..
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhh
Confidence 4688999999993211 23446699999999999999999999999999999999998 999982 11 111
Q ss_pred -----------CCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC---CccCCCCCcc
Q 025293 147 -----------KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHG 212 (255)
Q Consensus 147 -----------~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G 212 (255)
.+.++|+ +++.-..++. ....+-........|.+.+........++.++.++. ...+..||||
T Consensus 80 ~~a~pr~vl~vRr~TiGy-VSQFLRviPR--V~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGG 156 (235)
T COG4778 80 VTAEPREVLEVRRTTIGY-VSQFLRVIPR--VSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGG 156 (235)
T ss_pred hccChHHHHHHHHhhhHH-HHHHHHhccC--cchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCc
Confidence 0123443 3222111111 122222222333445554444556677888888874 4567899999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+|||.|||.++.+-+||+|||||+.||..++..+.++|.++
T Consensus 157 EqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~ 198 (235)
T COG4778 157 EQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198 (235)
T ss_pred hheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
No 286
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.95 E-value=4.7e-28 Score=235.34 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=120.6
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++..++ +|+|+||+|++||++||+|+||||||||+|+|+|+.+ |++|+ .+++...
T Consensus 451 ~I~~~nvsf~Y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPL--ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred eEEEEEEEEEcCCCCcc--ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence 58999999999643234 4599999999999999999999999999999999998 99999 5555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~k 214 (255)
+..+|. +.++.+.+.. +..+|+. +......+++.++++..++. .+. ....||||||
T Consensus 526 r~~i~~-v~Q~~~lf~g---TI~eNi~-------~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 526 RRQLGV-VLQNGRLMSG---SIFENIA-------GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred HhccEE-EccCCccCcc---cHHHHHh-------cCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 234565 6665554321 3333332 21113344555555554432 222 2357999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||+..+|++|||||||++||+.+.+++.+.+..
T Consensus 595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988864
No 287
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.95 E-value=3.2e-28 Score=232.43 Aligned_cols=163 Identities=14% Similarity=0.105 Sum_probs=120.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||++.|++..++ +|+|+||+|++|+.++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 341 ~i~~~~vsf~y~~~~~~--il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVP--ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred eEEEEEEEEecCCCCCc--cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence 59999999999753233 4599999999999999999999999999999999998 99999 5555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCcc----CCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~----~~~lS~G~k 214 (255)
...+++ +.++.+.+. -+..+|+.. +.++....+++.++++..++. .+.. ...||||||
T Consensus 416 ~~~i~~-v~Q~~~lf~---~Ti~~Ni~~-----~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqr 486 (582)
T PRK11176 416 RNQVAL-VSQNVHLFN---DTIANNIAY-----ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR 486 (582)
T ss_pred HhhceE-EccCceeec---chHHHHHhc-----CCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHH
Confidence 123454 555554332 133332211 112234455555555554432 2222 356999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||++..+|+++|+||||++||+.+...+.+.+.+
T Consensus 487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~ 525 (582)
T PRK11176 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988865
No 288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=1.1e-27 Score=206.85 Aligned_cols=163 Identities=13% Similarity=0.072 Sum_probs=112.6
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
...|+++|+++.|++..+. +++++||+|++|+++||+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 17 ~~~i~~~~l~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKP--VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPLH 91 (257)
T ss_pred CceEEEEEEEEEeCCCCCc--ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCHH
Confidence 4579999999999752122 5699999999999999999999999999999999998 99998 4444221
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHH---------HHHhh--ccc--CCccCCCCCcc
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNL--RNQ--GSVYAPSFDHG 212 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~l--~~~--~~~~~~~lS~G 212 (255)
...+++ +..+.. ++. .++.+ +.............. .++.+ ++. ...+...||+|
T Consensus 92 ~~~~~i~~-v~q~~~-l~~--~tv~~-------nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G 160 (257)
T cd03288 92 TLRSRLSI-ILQDPI-LFS--GSIRF-------NLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVG 160 (257)
T ss_pred HHhhhEEE-ECCCCc-ccc--cHHHH-------hcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHH
Confidence 112343 332221 111 12211 111111111111122 22222 111 23456789999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+++|++++.+|++||+||||++||+..+..+.+++.+
T Consensus 161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 201 (257)
T cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMT 201 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998875
No 289
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.95 E-value=7.1e-28 Score=209.73 Aligned_cols=160 Identities=14% Similarity=0.183 Sum_probs=114.4
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
|+++||++.|.+.... +|+|+||+|++||++||+|+||||||||+++|+|++ +++|+ .+++... .
T Consensus 3 i~~~nls~~~~~~~~~--~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 3 MTVKDLTAKYTEGGNA--VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred EEEEEEEEEeCCCCCc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHHHHh
Confidence 7899999999532133 569999999999999999999999999999999998 67888 4554221 1
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccC-----------CCCCccccc
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYA-----------PSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~-----------~~lS~G~kq 215 (255)
..+++ +..+.. ++. .++.+++. .........+..+++.+++.. +..+ ..||+||+|
T Consensus 77 ~~i~~-v~q~~~-lf~--~tv~~nl~-------~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q 145 (275)
T cd03289 77 KAFGV-IPQKVF-IFS--GTFRKNLD-------PYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ 145 (275)
T ss_pred hhEEE-ECCCcc-cch--hhHHHHhh-------hccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 12343 333222 111 13322221 111122345566667666541 2222 349999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|+|||+||||++||+.++..+.++|.+.
T Consensus 146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~ 184 (275)
T cd03289 146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA 184 (275)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988753
No 290
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.6e-28 Score=228.30 Aligned_cols=167 Identities=14% Similarity=0.122 Sum_probs=119.0
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (255)
.+++++|++.. . +++|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 256 ~~l~~~~~~~~------~--~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 256 VRLRLDGLKGP------G--LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred cEEEEeccccC------C--cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence 46899999732 2 5699999999999999999999999999999999998 99999 44442211
Q ss_pred ---CCeEEEEecCCC-CCCCccCCcccChHHHHHhc----CC--CCCccHHHHHHHHHhhccc---CCccCCCCCccccc
Q 025293 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARR----GA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ---~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~----~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kq 215 (255)
..+++ +.++.. ......+++.++..+..... +. ..........++++.+++. .+.++..|||||||
T Consensus 325 ~~~~~i~~-~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 325 AIRAGIML-CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred HHhCCCEE-cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHH
Confidence 12343 333211 00111134444433211110 10 0111123456788888873 46778899999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 442 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL 442 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998653
No 291
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=7.8e-28 Score=206.47 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=102.2
Q ss_pred ccccccc-----CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEecCCCCCCCccCCccc
Q 025293 98 SALASNV-----NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAME 171 (255)
Q Consensus 98 ~~isl~i-----~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~ 171 (255)
++++|++ .+||+++|+||||||||||+++|+|+++ |++|+ .+++. .+++ +.+..... ...++.+
T Consensus 11 ~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~-~~q~~~~~--~~~tv~e 80 (246)
T cd03237 11 GEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSY-KPQYIKAD--YEGTVRD 80 (246)
T ss_pred CcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEE-ecccccCC--CCCCHHH
Confidence 5555555 5799999999999999999999999998 99998 34432 3343 22221111 1134444
Q ss_pred ChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ 249 (255)
++........ .......++++.+++. .+.++..|||||+||+++|++|+.+|+++|+||||++||+..+..+.+
T Consensus 81 ~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 81 LLSSITKDFY----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred HHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 3332211111 0112245667777765 356788999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 025293 250 MFDEK 254 (255)
Q Consensus 250 ll~~~ 254 (255)
+|.+.
T Consensus 157 ~l~~~ 161 (246)
T cd03237 157 VIRRF 161 (246)
T ss_pred HHHHH
Confidence 88753
No 292
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.95 E-value=6.6e-28 Score=235.15 Aligned_cols=162 Identities=20% Similarity=0.139 Sum_probs=120.4
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++..++ +|+|+||+|++||.+||+|+||||||||+|+|+|+++ |++|+ .+++...
T Consensus 477 ~I~~~~vsf~y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 477 YVELRNITFGYSPLEPP--LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred eEEEEEEEEecCCCCCC--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence 58999999999863334 4599999999999999999999999999999999998 99998 5554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~k 214 (255)
+..+|+ +.++.+.+. -+..+|+.. + .++...+++.++++..++. .+ .....||||||
T Consensus 552 r~~i~~-v~Q~~~lf~---gTi~eNi~l-----~-~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQr 621 (710)
T TIGR03796 552 ANSVAM-VDQDIFLFE---GTVRDNLTL-----W-DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQR 621 (710)
T ss_pred HhheeE-EecCChhhh---ccHHHHhhC-----C-CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHH
Confidence 234565 565554332 133333221 1 1223445555555554432 22 22457999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|++|||||||++||+.+.+++.+.+.+
T Consensus 622 QRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 622 QRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred HHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988764
No 293
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=5.8e-28 Score=226.94 Aligned_cols=166 Identities=13% Similarity=0.108 Sum_probs=120.8
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------ 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------ 147 (255)
++++++||++ . +++|+||+|.+||++||+||||||||||+|+|+|+++ |++|+ .+++. +.
T Consensus 256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence 5799999984 1 4599999999999999999999999999999999998 99999 45442 21
Q ss_pred --CCCeEEEEecCCC-CCCCccCCcccChHHHHH-hc----C-CCCCccHHHHHHHHHhhccc---CCccCCCCCccccc
Q 025293 148 --PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR----G-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (255)
Q Consensus 148 --~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~-~~----~-~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kq 215 (255)
...+|+ +.+... ......+++.++..+... .. + .........+.++++.+++. .+.++..|||||||
T Consensus 324 ~~~~~i~~-v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 324 GLANGIVY-ISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred HHHCCCEE-ecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHH
Confidence 113455 444321 001112455444432111 00 1 11111123466788888883 46778899999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++|+.+|++|||||||++||+.+++.+.++|.+.
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 441 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQF 441 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 294
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=6.2e-28 Score=217.80 Aligned_cols=170 Identities=16% Similarity=0.143 Sum_probs=131.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (255)
+..+++++++|.|++. .++++|||+|++|||+||+|+||||||||+++|.|+++ |++|+ +++++...
T Consensus 2 ~~~l~~~~itK~f~~~----~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 2 EPALEMRGITKRFPGV----VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred CceEEEeccEEEcCCE----EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence 3578999999999973 38899999999999999999999999999999999998 99999 66665322
Q ss_pred ----CCeEEEEecCCCCCCCccCCcccChHHHHHhc-C--CCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G--APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l 219 (255)
--+|. +++ .|.+.. .+|+.+|+....... + +........+.++.+.+++. .+.++..||-|+||||.|
T Consensus 75 dA~~~GIGM-VhQ-HF~Lv~-~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI 151 (501)
T COG3845 75 DAIRLGIGM-VHQ-HFMLVP-TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI 151 (501)
T ss_pred HHHHcCCcE-Eee-cccccc-ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence 12454 332 333322 367777765433221 1 01112234456777777776 567889999999999999
Q ss_pred hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.++|..++++|||||||+.|-|...+++.+++...
T Consensus 152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l 186 (501)
T COG3845 152 LKALYRGARLLILDEPTAVLTPQEADELFEILRRL 186 (501)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988653
No 295
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=230.93 Aligned_cols=173 Identities=16% Similarity=0.143 Sum_probs=127.8
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
++|+++|+++.|++......+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence 489999999999642111125699999999999999999999999999999999998 99999 5554321
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhh
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la 220 (255)
....++ +.++.. +. ..+++.++..+.....+...........++++.+++.. +..+..||+||+||+++|
T Consensus 80 ~~~~~~~~i~~-v~q~~~-l~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 80 LAQLRREHFGF-IFQRYH-LL-SHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HHHHHhccEEE-EeCCcc-cC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHH
Confidence 123454 443332 21 11355555544332223222222334567788877753 567789999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+.+|++||+|||+.+||+.+++.+.+++.+.
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l 190 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQL 190 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753
No 296
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.9e-28 Score=198.18 Aligned_cols=167 Identities=15% Similarity=0.195 Sum_probs=113.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC---C---
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---P--- 149 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~---~--- 149 (255)
||+++||+++..+ ++++ ++++|++++||+++|+||||||||||||.|+|.+. |++|+ .+++.... +
T Consensus 1 mi~a~nls~~~~G--r~ll--~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 1 MIRAENLSYSLAG--RRLL--DGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred CeeeeeeEEEeec--ceec--cCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence 5899999999988 5555 99999999999999999999999999999999998 99998 44432210 0
Q ss_pred --CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC--ccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 150 --~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
..+. ..++...-+ .+++.+-+...+.-.+-... .+..-...++...+.. ..+....|||||+|||.+||.|
T Consensus 74 A~~raV-lpQ~s~laF--pFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 74 ARHRAV-LPQNSSLAF--PFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred HHHhhh-cccCccccc--ceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence 1121 222111000 02333322222211111111 1111234555555543 3456689999999999999998
Q ss_pred cc------CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 224 GL------QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~------~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+. .+++|+|||||+.||...+..+..+..+
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~ 186 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHH
Confidence 54 3458899999999999999999887754
No 297
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=8.7e-28 Score=236.41 Aligned_cols=164 Identities=16% Similarity=0.160 Sum_probs=116.1
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|...+ .+.+|+|+||.|++|+.++|+|||||||||++++|.++.. |++|+ .+++...
T Consensus 350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHHH
Confidence 689999999998742 3557799999999999999999999999999999999998 99988 4444321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHh---------hccc----CCccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQ----GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~----~~~~~~~lS~G~k 214 (255)
+..+|. +.+....+. .++.+|+.+ |- ++....++.++.+. +-.+ .-....+||||||
T Consensus 426 r~~igl-V~QePvlF~---~tI~eNI~~-----G~-~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQK 495 (1228)
T KOG0055|consen 426 RSQIGL-VSQEPVLFA---TTIRENIRY-----GK-PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQK 495 (1228)
T ss_pred HhhcCe-eeechhhhc---ccHHHHHhc-----CC-CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHH
Confidence 223444 333322111 233332221 11 12222222222221 1111 2233457999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||++|||+|+.+|+||||||||++||+.+...+.+.|++.
T Consensus 496 QRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~ 535 (1228)
T KOG0055|consen 496 QRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA 535 (1228)
T ss_pred HHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998763
No 298
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.95 E-value=5.9e-28 Score=203.06 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=103.1
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc--CCCCCCCCCeEEEEecCCCCCCCccCCcccCh
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~--~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~ 173 (255)
+++|+||+|++|++++|+||||||||||+|+|+|+++ |++|++ +++... ..+. . ....+.+++.++.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~--~~~~----~--~~l~~~ltv~enl 70 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL--PLGA----N--SFILPGLTGEENA 70 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee--cccc----c--cccCCcCcHHHHH
Confidence 5699999999999999999999999999999999998 999983 333211 1111 1 1111224666666
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293 174 KEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll 251 (255)
.+.....+.... .....+.+.+++. .+.++..||+||+||+++|++++.+|+++|+|||++++|+..+..+.+++
T Consensus 71 ~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l 147 (213)
T PRK15177 71 RMMASLYGLDGD---EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAAL 147 (213)
T ss_pred HHHHHHcCCCHH---HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence 554443332211 1111222333332 45678899999999999999999999999999999999999999999876
Q ss_pred H
Q 025293 252 D 252 (255)
Q Consensus 252 ~ 252 (255)
.
T Consensus 148 ~ 148 (213)
T PRK15177 148 A 148 (213)
T ss_pred H
Confidence 4
No 299
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.95 E-value=1e-27 Score=225.67 Aligned_cols=166 Identities=19% Similarity=0.177 Sum_probs=118.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P---- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~---- 148 (255)
.++|+++|+++ . +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+ .+++... .
T Consensus 266 ~~~l~~~~l~~---~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~ 333 (510)
T PRK15439 266 APVLTVEDLTG---E------GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTA 333 (510)
T ss_pred CceEEEeCCCC---C------CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHH
Confidence 45899999983 1 3599999999999999999999999999999999998 99999 4444311 1
Q ss_pred ----CCeEEEEecCC--CCCCCccCCcccChHHHH-HhcCC--CCCccHHHHHHHHHhhccc---CCccCCCCCcccccc
Q 025293 149 ----PDVATVLPMDG--FHLYLSQLDAMEDPKEAH-ARRGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 216 (255)
Q Consensus 149 ----~~~g~~i~~~~--~~~~~~~l~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqr 216 (255)
..+++ +.+.. ..++ ..+++.++..... ..... ........+.++++.+++. .+.++..||||||||
T Consensus 334 ~~~~~~i~~-v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr 411 (510)
T PRK15439 334 QRLARGLVY-LPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQK 411 (510)
T ss_pred HHHhCCcEE-CCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHH
Confidence 12343 33221 0111 1123333322110 00111 1111123456788888885 367788999999999
Q ss_pred hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|++|+.+|++|||||||++||+.+++.+.++|.+.
T Consensus 412 l~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l 449 (510)
T PRK15439 412 VLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449 (510)
T ss_pred HHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753
No 300
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1e-27 Score=224.06 Aligned_cols=166 Identities=16% Similarity=0.077 Sum_probs=119.4
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-CCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (255)
|.+|.++|+++.|++ +.++ +|+||+|.+|+++||||+||||||||||+|+|.+. |++|++ ... ...+++
T Consensus 1 m~~i~~~~ls~~~g~--~~l~--~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~---~~~v~~ 70 (530)
T COG0488 1 MSMITLENLSLAYGD--RPLL--ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPK---GLRVGY 70 (530)
T ss_pred CceEEEeeeEEeeCC--ceee--cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecC---CceEEE
Confidence 568999999999987 4554 99999999999999999999999999999999998 999973 221 113444
Q ss_pred EEecCCCCCCCccCCcccChHH-------HH----Hhc------------------C-CCCCccHHHHHHHHHhhcccC-
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKE-------AH----ARR------------------G-APWTFNPLLLLNCLKNLRNQG- 202 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~-------~~----~~~------------------~-~~~~~~~~~~~~~l~~l~~~~- 202 (255)
+.++...... .++.+.+.. .. ... . +.......+...++..+++..
T Consensus 71 -l~Q~~~~~~~--~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~ 147 (530)
T COG0488 71 -LSQEPPLDPE--KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE 147 (530)
T ss_pred -eCCCCCcCCC--ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence 3333221110 122111100 00 000 0 000001134456677777766
Q ss_pred CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 203 ~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+.++..||||||.||++|++|..+|++|||||||+.||..+...+.++|..
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~ 198 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR 198 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh
Confidence 688999999999999999999999999999999999999999998888753
No 301
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.95 E-value=1.9e-27 Score=224.80 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=119.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++..++ +++|+||+|++|++++|+||||||||||+|+|+|+.+ |++|+ .+++...
T Consensus 320 ~i~~~~v~f~y~~~~~~--il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAP--ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred eEEEEEEEEECCCCCcc--cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence 58999999999763233 4599999999999999999999999999999999998 99999 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~k 214 (255)
....++ +.++.+.+. .+..+|... +. .......+.++++..++. .+ .....||||||
T Consensus 395 r~~i~~-v~Q~~~lf~---~ti~~Ni~~-----~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~ 464 (529)
T TIGR02857 395 RDQIAW-VPQHPFLFA---GTIAENIRL-----AR-PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQA 464 (529)
T ss_pred HhheEE-EcCCCcccC---cCHHHHHhc-----cC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHH
Confidence 123555 555544332 233333322 11 122334444555544432 22 23457999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus 465 qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~ 503 (529)
T TIGR02857 465 QRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA 503 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988865
No 302
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=8e-28 Score=200.72 Aligned_cols=151 Identities=14% Similarity=0.150 Sum_probs=120.7
Q ss_pred ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEec-CCCCCCCccCCcc
Q 025293 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPM-DGFHLYLSQLDAM 170 (255)
Q Consensus 93 ~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~-~~~~~~~~~l~~~ 170 (255)
.+.+|+||||++++||.+||+|+||||||||||+|+|.++ |++|+ .+.+++. ..+.+ .||. ++++..
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~-----~li~lg~Gf~---pelTGr 107 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVA-----PLIELGAGFD---PELTGR 107 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEe-----hhhhcccCCC---cccchH
Confidence 3557899999999999999999999999999999999999 99998 4444322 11111 2332 237888
Q ss_pred cChHHHHHhcCCCCCccHHHHHHHHHhhcc--cCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHH
Q 025293 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (255)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~ 248 (255)
+|..+.....|+........+.++.+.-.+ ..+.+++.||.||+.|++++.+...+|+|||+||..+.-|+..+++-.
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 999888888887655555556666665444 468899999999999999999999999999999999999999988887
Q ss_pred HHHHhh
Q 025293 249 SMFDEK 254 (255)
Q Consensus 249 ~ll~~~ 254 (255)
+.+.+.
T Consensus 188 ~rl~e~ 193 (249)
T COG1134 188 ERLNEL 193 (249)
T ss_pred HHHHHH
Confidence 777654
No 303
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=1.6e-27 Score=230.93 Aligned_cols=163 Identities=15% Similarity=0.118 Sum_probs=121.9
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-CCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (255)
.++|+++||++.|++. +. +|+|+||+|.+|+++||+||||||||||||+|+|+++ |++|++ ++. ...+|+
T Consensus 506 ~~~L~~~~ls~~y~~~-~~--il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~---~~~igy 576 (718)
T PLN03073 506 PPIISFSDASFGYPGG-PL--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSA---KVRMAV 576 (718)
T ss_pred CceEEEEeeEEEeCCC-Ce--eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECC---ceeEEE
Confidence 3689999999999642 22 4599999999999999999999999999999999998 999983 332 123454
Q ss_pred EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcEE
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~il 230 (255)
+.+.... .++...+....... ..+ ......+..+++.+++. .+.++..||||||||+++|++++.+|++|
T Consensus 577 -v~Q~~~~----~l~~~~~~~~~~~~-~~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lL 649 (718)
T PLN03073 577 -FSQHHVD----GLDLSSNPLLYMMR-CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIL 649 (718)
T ss_pred -Eeccccc----cCCcchhHHHHHHH-hcC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 4332211 12222222111111 111 12235567888988885 35678999999999999999999999999
Q ss_pred EEcCCCCCCChhHHHHHHHHHHh
Q 025293 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 llDep~~~LD~~~~~~l~~ll~~ 253 (255)
||||||++||+.++..+.+.+.+
T Consensus 650 LLDEPT~~LD~~s~~~l~~~L~~ 672 (718)
T PLN03073 650 LLDEPSNHLDLDAVEALIQGLVL 672 (718)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999888754
No 304
>PLN03211 ABC transporter G-25; Provisional
Probab=99.94 E-value=1.3e-27 Score=230.26 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=123.4
Q ss_pred EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC--CCc-cCCCCCC----CCCe
Q 025293 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KAS-SFDSQVK----PPDV 151 (255)
Q Consensus 79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~--~G~-~~~~~~~----~~~~ 151 (255)
.++|+++.|++ +. +|+|+|+++++||++||+|||||||||||++|+|.++ |+ +|+ .+++... ....
T Consensus 70 ~~~~l~~~~~~--~~--iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i 142 (659)
T PLN03211 70 KISDETRQIQE--RT--ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT 142 (659)
T ss_pred ccccccccCCC--Ce--eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence 45788999987 44 5599999999999999999999999999999999986 64 788 4555321 1234
Q ss_pred EEEEecCCCCCCCccCCcccChHHHHHhcCCCCC----ccHHHHHHHHHhhcccC-------CccCCCCCcccccchhhh
Q 025293 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----FNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~~-------~~~~~~lS~G~kqrv~la 220 (255)
|+ +.++..... .+++.+++.+..... .+.. .....+.++++.+++.. +..+..||||||||+++|
T Consensus 143 ~y-v~Q~~~l~~--~lTV~E~l~~~a~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia 218 (659)
T PLN03211 143 GF-VTQDDILYP--HLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIA 218 (659)
T ss_pred EE-ECcccccCC--cCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHH
Confidence 55 444433222 257777776543322 2211 11233567888888753 234678999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+.+|+|||+||||++||..++..+.+++.+.
T Consensus 219 ~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l 252 (659)
T PLN03211 219 HEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL 252 (659)
T ss_pred HHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753
No 305
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=2.1e-27 Score=227.24 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=120.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++|+++.|++. ++ +|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+ .+++...
T Consensus 340 ~i~~~~v~f~y~~~-~~--il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 340 RIDIDNVSFAYRDD-NL--VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred eEEEEEEEEEeCCC-Cc--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence 48999999999752 33 4599999999999999999999999999999999998 99998 5555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~k 214 (255)
...+++ +.++.+.+.. +..+|+.. ..+....++.++++.+++. .+. ....|||||+
T Consensus 414 ~~~i~~-v~Q~~~lF~~---Ti~~NI~~-------~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr 482 (592)
T PRK10790 414 RQGVAM-VQQDPVVLAD---TFLANVTL-------GRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482 (592)
T ss_pred HhheEE-EccCCccccc---hHHHHHHh-------CCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 123454 5555543321 33333322 2223344555565555432 222 3457999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+|+|+||||++||+.+.+.+.+.+.+
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~ 521 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA 521 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988865
No 306
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.94 E-value=2.3e-27 Score=230.80 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=118.8
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++..++ +|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+ .+++...
T Consensus 463 ~I~~~~vsf~Y~~~~~~--vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETP--ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred eEEEEEEEEEeCCCCcc--ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 58999999999753234 4599999999999999999999999999999999998 99998 4554221
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~k 214 (255)
+..+++ +.++.+.+. -+..+|+.. + .++...+++.++++..++. .+ .....||||||
T Consensus 538 r~~i~~-v~Q~~~lf~---~TI~eNi~~-----~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQr 607 (694)
T TIGR03375 538 RRNIGY-VPQDPRLFY---GTLRDNIAL-----G-APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607 (694)
T ss_pred HhccEE-ECCChhhhh---hhHHHHHhC-----C-CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHH
Confidence 123454 555544322 133333221 1 1123444555555544432 22 23457999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||++..+|+++|+||||++||+.+.+.+.+.+.+
T Consensus 608 QRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~ 646 (694)
T TIGR03375 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR 646 (694)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 307
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=1.2e-27 Score=195.30 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=91.1
Q ss_pred cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCC
Q 025293 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (255)
Q Consensus 81 ~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~ 160 (255)
.||+|.|++ +. ++++ +|+|++||+++|+||||||||||+|+|+|+++ |++|+ +.+++.
T Consensus 4 ~~l~~~~~~--~~--~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~--------------i~~~g~ 61 (177)
T cd03222 4 PDCVKRYGV--FF--LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDN--------------DEWDGI 61 (177)
T ss_pred CCeEEEECC--EE--EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcE--------------EEECCE
Confidence 589999987 33 4477 49999999999999999999999999999996 77763 333332
Q ss_pred CCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCC
Q 025293 161 HLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (255)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~L 239 (255)
.+ ++ ++... ||+||+||+++|++++.+|+++|+||||++|
T Consensus 62 ~i------------------~~~~q~~~---------------------LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 62 TP------------------VYKPQYID---------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred EE------------------EEEcccCC---------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 10 00 11000 9999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 025293 240 DGGVWKDVSSMFDE 253 (255)
Q Consensus 240 D~~~~~~l~~ll~~ 253 (255)
|+.++..+.+++.+
T Consensus 103 D~~~~~~l~~~l~~ 116 (177)
T cd03222 103 DIEQRLNAARAIRR 116 (177)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998865
No 308
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.9e-27 Score=214.35 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=118.6
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CC---
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PP--- 149 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~--- 149 (255)
.++++||+++|++.+.+ +|+|+||++++||.++|+|++|||||||+++|+|... |++|+ .+++... ++
T Consensus 336 ~l~~~~vsF~y~~~~~~--~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 336 ALELRNVSFTYPGQQTK--ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred eeeeccceeecCCCccc--hhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence 79999999999985434 5599999999999999999999999999999999997 88887 3333211 00
Q ss_pred --CeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc-------------CCccCCCCCccc
Q 025293 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV 213 (255)
Q Consensus 150 --~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~ 213 (255)
.... +.+... ++. .-.+.+.-. .++...+.+.++++.+++. .......|||||
T Consensus 411 ~e~i~v-l~Qr~h-lF~---------~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE 479 (573)
T COG4987 411 RETISV-LTQRVH-LFS---------GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE 479 (573)
T ss_pred HHHHhh-hccchH-HHH---------HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence 0000 111110 000 012222222 2344566777788877764 122345799999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+++||++..+++++||||||.|||+.+..++.+++.+.
T Consensus 480 ~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~ 520 (573)
T COG4987 480 RRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH 520 (573)
T ss_pred HHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764
No 309
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=2.1e-27 Score=226.46 Aligned_cols=163 Identities=14% Similarity=0.124 Sum_probs=120.7
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
..|+++||++.|++..++ +|+|+||+|++|++++|+||||||||||+++|+|+.+ |++|+ .+++...
T Consensus 337 ~~i~~~~v~f~y~~~~~~--il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~ 411 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQP--VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAA 411 (574)
T ss_pred CeEEEEEEEEECCCCCCc--ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHH
Confidence 359999999999753233 4599999999999999999999999999999999998 99998 5554321
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--------Cc----cCCCCCcccc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--------SV----YAPSFDHGVG 214 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--------~~----~~~~lS~G~k 214 (255)
+..++. +.++.+.+. -+..+|+.+ + .++...+.+..+++.+++.. +. ....||||||
T Consensus 412 ~r~~i~~-v~Q~~~lf~---~ti~~Ni~~-----~-~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqr 481 (574)
T PRK11160 412 LRQAISV-VSQRVHLFS---ATLRDNLLL-----A-APNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQ 481 (574)
T ss_pred HHhheeE-Ecccchhhc---ccHHHHhhc-----C-CCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHH
Confidence 122444 555443322 133232221 1 12234455666666665531 11 3457999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|++||+||||++||+.+.+.+.+.+.+
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 310
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.5e-27 Score=214.17 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=122.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||++.|+++ ++++ +++||+|++||.+||+|+|||||||++|+|.++. .++|+ .+++...
T Consensus 351 ~I~F~dV~f~y~~k-~~iL--~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK-RKVL--KGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred cEEEEeeEEEeCCC-Ccee--cceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChHHh
Confidence 59999999999973 2355 9999999999999999999999999999999999 78998 5665321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~k 214 (255)
+..+|. ++++...+.+ ++..|+ .+|.+ ....+++.++.++.++. .-.....||||||
T Consensus 424 R~~Ig~-VPQd~~LFnd---TIl~NI-----~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGek 493 (591)
T KOG0057|consen 424 RQSIGV-VPQDSVLFND---TILYNI-----KYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEK 493 (591)
T ss_pred hhheeE-eCCcccccch---hHHHHh-----hcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchH
Confidence 334565 6766654332 322222 23322 23345566666666553 1133557999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||++||+++.+|+|+++||||+.||..+...+.+.+..
T Consensus 494 QrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 494 QRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred HHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999988764
No 311
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=3.9e-27 Score=225.23 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=117.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
-|+++||++.|.+. ++ +|+|+||+|++|+++||+|+||||||||+++|+|++ |++|+ .+++...
T Consensus 349 ~i~~~~vsf~~~~~-~~--vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~l 421 (588)
T PRK11174 349 TIEAEDLEILSPDG-KT--LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESW 421 (588)
T ss_pred eEEEEeeEEeccCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHH
Confidence 48999999755432 34 459999999999999999999999999999999998 88998 5555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------cCCc----cCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~lS~G~k 214 (255)
+..+++ +.++.+.+. -+..+|+.+. .++...+++.++++..++ +.+. ....||||||
T Consensus 422 r~~i~~-v~Q~~~LF~---~TI~eNI~~g------~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 422 RKHLSW-VGQNPQLPH---GTLRDNVLLG------NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred HhheEE-ecCCCcCCC---cCHHHHhhcC------CCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 123555 666655433 2443433221 123344555555554332 2232 2357999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||++.+|+||||||||++||..+.+.+.+.+.+
T Consensus 492 QRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA 530 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764
No 312
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.94 E-value=3.6e-27 Score=224.70 Aligned_cols=161 Identities=17% Similarity=0.105 Sum_probs=119.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
-|+++||+++|++..++ +++|+||+|++|++++|+|+||||||||+++|+|+.+ |++|+ .+++...
T Consensus 330 ~i~~~~v~f~y~~~~~~--il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRP--ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred eEEEEEEEEEcCCCCCc--cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence 58999999999653233 4599999999999999999999999999999999998 99998 4554221
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC--CCccHHHHHHHHHhhccc---------CCcc----CCCCCcc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHG 212 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~---------~~~~----~~~lS~G 212 (255)
...+++ +.++.+.+. -+..+ +..+. .+....++.++++.+++. .+.. ...||||
T Consensus 405 ~~~i~~-v~Q~~~lf~---~Ti~~-------Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 405 RRQVAL-VSQDVVLFN---DTIAN-------NIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred HhhceE-EccCccccc---ccHHH-------HHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 122444 555544332 13222 22222 234455555666555432 2222 3469999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||||+++||+++.+|+++||||||++||+.+.+.+.+.+..
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988865
No 313
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=5e-27 Score=222.65 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=115.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++|+++.|++..++ +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 316 ~i~~~~v~~~y~~~~~~--~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKP--TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred eEEEEEEEEEcCCCCcc--ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence 59999999999653233 4599999999999999999999999999999999998 99998 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHH---------HHhhcccC----CccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQG----SVYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~l~~~~----~~~~~~lS~G~k 214 (255)
....++ +.++.+.+. -+..+|... ..++...+.+.++ ++.+..+. ......||||||
T Consensus 391 ~~~i~~-v~q~~~lf~---~ti~~Ni~~------~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~ 460 (544)
T TIGR01842 391 GKHIGY-LPQDVELFP---GTVAENIAR------FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR 460 (544)
T ss_pred hhheEE-ecCCccccc---ccHHHHHhc------cCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHH
Confidence 123444 444433221 133232221 1112223333333 33332221 234568999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||++..+|+++|+||||++||+.+.+.+.+.+.+
T Consensus 461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~ 499 (544)
T TIGR01842 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKA 499 (544)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988864
No 314
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.94 E-value=4.2e-27 Score=199.18 Aligned_cols=148 Identities=17% Similarity=0.198 Sum_probs=104.5
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCCeEEEEecCCCCCCCccCCcccChHHHH
Q 025293 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (255)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~ 177 (255)
|+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++... ....++ +............++.++..+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGY-VPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEE-ecccccccCCCCccHHHHHHhcc
Confidence 5788999999999999999999999999998 99999 5555321 123454 33332111111123333332211
Q ss_pred Hh-cCC---CCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293 178 AR-RGA---PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 178 ~~-~~~---~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll 251 (255)
.. .+. ........+..+++.+++.. +.++..||+||+||+++|++++.+|+++|+||||++||+.+++.+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l 156 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF 156 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00 011 11112234567788887753 5677899999999999999999999999999999999999999999998
Q ss_pred Hh
Q 025293 252 DE 253 (255)
Q Consensus 252 ~~ 253 (255)
.+
T Consensus 157 ~~ 158 (223)
T TIGR03771 157 IE 158 (223)
T ss_pred HH
Confidence 75
No 315
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=3.3e-27 Score=188.92 Aligned_cols=177 Identities=15% Similarity=0.125 Sum_probs=124.9
Q ss_pred CCeEEecCchheehhhh-----cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-
Q 025293 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~-----~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~- 147 (255)
|+.++++|++|.|.... +.+.+++.|||++++|+.+||+|.||||||||.|+|+|.++ |++|+ .+++...
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 56789999999985421 23457799999999999999999999999999999999999 99999 5555432
Q ss_pred ------CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccch
Q 025293 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv 217 (255)
+...-..+++|.....++.+.+..-+....+. -.+........+.+-+..+++. .+.++..||-||||||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 11111224443322222212221111111111 1111122234456667777775 4578889999999999
Q ss_pred hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++||||+.+|+|+|.||...+||...+.++.+++.+.
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeL 195 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLEL 195 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988654
No 316
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.94 E-value=4.4e-27 Score=207.60 Aligned_cols=176 Identities=18% Similarity=0.231 Sum_probs=136.5
Q ss_pred CCeEEecCchheehhh-------hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC
Q 025293 75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV 146 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~-------~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~ 146 (255)
.+++++++|...|.-. ...+.+++++||++++|+.+||+|.||||||||-+.|.+++ +..|+ .|.+..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~~ 349 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQD 349 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCcc
Confidence 4689999999988532 12355789999999999999999999999999999999999 66798 566543
Q ss_pred CC--------C--CeEEEEecCCCCCCCccCCcccChHHHHHhcCC--CCCccHHHHHHHHHhhccc---CCccCCCCCc
Q 025293 147 KP--------P--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (255)
Q Consensus 147 ~~--------~--~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~ 211 (255)
.. | ..-.++++|.|--..+.+++.+-+.+....... ........+.++++.+++. .++|+++|||
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 21 1 122346677665555555655544444443331 2333455678889999987 4689999999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||||++||||++.+|++++|||||+.||-..+.++.+++...
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~L 472 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999754
No 317
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.94 E-value=3.6e-27 Score=229.91 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=118.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++. ++ +|+|+||+|++|+.+||+|+||||||||+++|+|+.+ |++|+ .+++...
T Consensus 473 ~I~~~~vsf~y~~~-~~--iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 473 DIVINDVSYSYGYG-SN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred cEEEEEEEEEcCCC-Cc--ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence 58999999999742 34 4599999999999999999999999999999999998 99999 5555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------cCC----ccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~lS~G~k 214 (255)
+..+|+ +.++.+.+. -+..+|+.. +...+...+++.++++..++ +.+ .....||||||
T Consensus 547 r~~i~~-v~Q~~~lf~---gTI~eNi~l-----~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr 617 (708)
T TIGR01193 547 RQFINY-LPQEPYIFS---GSILENLLL-----GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617 (708)
T ss_pred HHheEE-EecCceehh---HHHHHHHhc-----cCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence 223565 565554332 133333322 11122333444444444332 222 23457999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||++.+|++||+||||++||+.+.+.+.+.+..
T Consensus 618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~ 656 (708)
T TIGR01193 618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656 (708)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888864
No 318
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=1.5e-26 Score=202.08 Aligned_cols=152 Identities=11% Similarity=0.100 Sum_probs=105.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
...|+++|+++. + +. +|+++||+|++|+++||+|+||||||||+++|+|+++ |++|+ .+++ .+++
T Consensus 37 ~~~l~i~nls~~--~--~~--vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i~y 102 (282)
T cd03291 37 DNNLFFSNLCLV--G--AP--VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RISF 102 (282)
T ss_pred CCeEEEEEEEEe--c--cc--ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EEEE
Confidence 457999999985 2 23 5599999999999999999999999999999999998 89997 3332 2444
Q ss_pred EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------c----CCccCCCCCcccccchhhh
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~lS~G~kqrv~la 220 (255)
+.+... ++. .++.++..+ +.. .........++.+++ . ....+..||+||+||+++|
T Consensus 103 -v~q~~~-l~~--~tv~enl~~-----~~~--~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lA 171 (282)
T cd03291 103 -SSQFSW-IMP--GTIKENIIF-----GVS--YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA 171 (282)
T ss_pred -EeCccc-ccc--cCHHHHhhc-----ccc--cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHH
Confidence 333322 111 132222211 100 011111122222211 1 1223568999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll 251 (255)
++|+.+|++||+||||++||+..+..+.+.+
T Consensus 172 raL~~~p~iLiLDEPt~gLD~~~~~~l~~~l 202 (282)
T cd03291 172 RAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202 (282)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 9999999999999999999999999888753
No 319
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.94 E-value=6.5e-27 Score=223.78 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=118.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||++.|++. ++ +|+|+||++++|++++|+|+||||||||+|+|+|+.+ |++|+ .+++...
T Consensus 334 ~I~~~~vsf~y~~~-~~--iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 334 AVEFDDVSFSYDNS-RQ--GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred eEEEEEEEEEeCCC-Cc--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence 58999999999752 33 4599999999999999999999999999999999998 99998 5555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~k 214 (255)
...+++ +.++.+.+. -+..+|+.+ + .++...+++..+++.+++. .+ .....|||||+
T Consensus 408 r~~i~~-v~Q~~~lf~---~Ti~~Ni~~-----~-~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 408 RRNIAV-VFQDAGLFN---RSIEDNIRV-----G-RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred HhheEE-EecCccccc---ccHHHHHhc-----C-CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 123555 555544332 133333321 1 1122334444454444321 22 22356999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+.+.+.+.+.+..
T Consensus 478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~ 516 (588)
T PRK13657 478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE 516 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764
No 320
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.94 E-value=6.3e-27 Score=228.08 Aligned_cols=158 Identities=17% Similarity=0.140 Sum_probs=115.8
Q ss_pred eEEecCchheehhhh-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~-~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
.|+++||++.|++.. ++ +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 478 ~I~~~nVsf~Y~~~~~~~--vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVP--VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHY 552 (711)
T ss_pred eEEEEEEEEECCCCCCCc--cccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence 599999999997521 23 5599999999999999999999999999999999998 99998 4555321
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCccc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~ 213 (255)
...++. +.++.+.+. -+..+|+.+ +. ++...+++.++++..++. .+. ....|||||
T Consensus 553 lr~~i~~-v~Q~~~lF~---gTIreNI~~-----g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 622 (711)
T TIGR00958 553 LHRQVAL-VGQEPVLFS---GSVRENIAY-----GL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ 622 (711)
T ss_pred HHhhceE-EecCccccc---cCHHHHHhc-----CC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence 123454 555554332 233333321 11 122344555555554432 222 235799999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ 249 (255)
|||+++||++..+|+|+|+||||++||+.+.+.+.+
T Consensus 623 kQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 623 KQRIAIARALVRKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred HHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH
Confidence 999999999999999999999999999999888877
No 321
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.94 E-value=4.8e-27 Score=226.85 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=118.5
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-CCCCCCCCCeEEE
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~~ 154 (255)
.+|+++||++.|++. +. +++|+||+|++||+++|+||||||||||+++|+|+.+ |++|++ ++. ....+.
T Consensus 450 ~~i~~~nv~~~~~~~-~~--il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~~- 519 (659)
T TIGR00954 450 NGIKFENIPLVTPNG-DV--LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLFY- 519 (659)
T ss_pred CeEEEEeeEEECCCC-Ce--eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEEE-
Confidence 469999999999642 23 5599999999999999999999999999999999997 888873 321 223454
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccC--Cc---------cCCCCCcccccchhhhhh
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG--SV---------YAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~--~~---------~~~~lS~G~kqrv~la~~ 222 (255)
+.++.+... .++.+++.+.....+. ........+.++++.+++.. +. ....||||||||+++||+
T Consensus 520 v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 520 VPQRPYMTL---GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred ECCCCCCCC---cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 444433221 1333333221110011 11123345567777766542 11 236899999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|+++||||||++||+...+.+.+.+.+
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 322
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.94 E-value=1.1e-26 Score=222.08 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=115.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++||++.|++. +. +++|+||+|++|++++|+||||||||||+++|+|+.+ |++|+ .+++...
T Consensus 334 ~i~~~~v~~~y~~~-~~--~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 334 AVEFRHITFEFANS-SQ--GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred eEEEEEEEEECCCC-Cc--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 58999999999752 23 4599999999999999999999999999999999998 99998 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------c----CCccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~lS~G~k 214 (255)
....+. +.++.+.+. .+..+++.+ +.+ +....++...++..++ + .......||||||
T Consensus 408 ~~~i~~-v~q~~~lf~---~ti~~Ni~~-----~~~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 408 RKSIAT-VFQDAGLFN---RSIRENIRL-----GRE-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred HhheEE-EccCCccCc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 123444 454443222 233333221 111 1222333333322211 1 1234567999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+|+.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus 478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~ 516 (585)
T TIGR01192 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA 516 (585)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 323
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.94 E-value=6e-27 Score=222.24 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=113.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++. ++ +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 322 ~i~~~~v~f~y~~~-~~--~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 322 TLELRNVTFAYQDN-GF--SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred eEEEEEEEEEeCCC-Ce--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence 68999999999742 23 4599999999999999999999999999999999998 99998 4444321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCc-------cCCCCCcccccchhhh
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV-------YAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~lS~G~kqrv~la 220 (255)
...+++ +.++.+.+.. +..++ ..........++++.+++.... ....|||||+||+++|
T Consensus 396 ~~~i~~-v~q~~~lf~~---ti~~n----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lA 461 (547)
T PRK10522 396 RKLFSA-VFTDFHLFDQ---LLGPE----------GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALL 461 (547)
T ss_pred hhheEE-EecChhHHHH---hhccc----------cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHH
Confidence 112333 3333322110 11111 1122233455667666654321 1357999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~ 252 (255)
|+++.+|++||+||||++||+.+.+.+.+.+.
T Consensus 462 Ral~~~~~ililDE~ts~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 462 LALAEERDILLLDEWAADQDPHFRREFYQVLL 493 (547)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998887764
No 324
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=9.4e-27 Score=200.70 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=109.4
Q ss_pred cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc------------CCCCCCC
Q 025293 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVKP 148 (255)
Q Consensus 81 ~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~------------~~~~~~~ 148 (255)
.+|+++|++. . .+++|+|+ +.+|++++|+|||||||||||++|+|+++ |++|++ +++....
T Consensus 4 ~~~~~~y~~~--~-~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 4 DEPVHRYGPN--S-FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred cCcceeecCc--c-hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchhh
Confidence 4789999752 1 25699995 99999999999999999999999999998 999984 2221110
Q ss_pred C----------CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccc
Q 025293 149 P----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP 216 (255)
Q Consensus 149 ~----------~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqr 216 (255)
. ..+. + ..+..+.. ....++... . +..........++++.+++.. +..+..||+||+||
T Consensus 77 ~~~~~~~~~~~~i~~-~-~~~~~~~~--~~~~~~i~~---~--l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 147 (255)
T cd03236 77 NYFTKLLEGDVKVIV-K-PQYVDLIP--KAVKGKVGE---L--LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQR 147 (255)
T ss_pred hhhHHhhhcccceee-e-cchhccCc--hHHHHHHHH---H--hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 0 0011 0 01111100 011111111 1 111112234567788887753 56778999999999
Q ss_pred hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|++++.+|+++|+||||++||+..+..+.+++.+.
T Consensus 148 v~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l 185 (255)
T cd03236 148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL 185 (255)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988753
No 325
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=1.1e-26 Score=221.24 Aligned_cols=162 Identities=13% Similarity=0.155 Sum_probs=116.2
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++|+++.|++..+. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 313 ~I~~~~v~~~y~~~~~~--~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHP--ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred cEEEEEEEEECCCCCCc--cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence 58999999999753233 4599999999999999999999999999999999998 99998 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~k 214 (255)
...++. +.++.+.+. -+..+|+.. +. ++.....+..+++..++. .+ .....|||||+
T Consensus 388 ~~~i~~-v~q~~~lf~---~ti~~Ni~~-----~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~ 457 (569)
T PRK10789 388 RSRLAV-VSQTPFLFS---DTVANNIAL-----GR-PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQK 457 (569)
T ss_pred HhheEE-EccCCeecc---ccHHHHHhc-----CC-CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 122444 444433221 133332211 11 223334444444443321 11 23457999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+.+.+.+.+.+..
T Consensus 458 qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~ 496 (569)
T PRK10789 458 QRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496 (569)
T ss_pred HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 326
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.94 E-value=1.4e-26 Score=220.92 Aligned_cols=162 Identities=20% Similarity=0.187 Sum_probs=117.5
Q ss_pred eEEecCchheehhhh-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~-~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
.|+++||++.|++.. +. +|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 337 ~i~~~~v~f~y~~~~~~~--iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQP--ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred eEEEEEEEEECCCCCCCc--cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence 589999999997421 23 4599999999999999999999999999999999998 99998 4554211
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCccc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~ 213 (255)
....++ +.++.+.+. -+..+|+.+ +. ++...+++.++++.+++. .+ .....|||||
T Consensus 412 ~~~~i~~-~~Q~~~lf~---~Ti~~Ni~~-----~~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq 481 (576)
T TIGR02204 412 LRARMAL-VPQDPVLFA---ASVMENIRY-----GR-PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ 481 (576)
T ss_pred HHHhceE-EccCCcccc---ccHHHHHhc-----CC-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHH
Confidence 123454 555444332 133333211 11 122344555555554432 12 2345799999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++||++..+|+++|+||||++||+.+.+.+.+.+..
T Consensus 482 ~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~ 521 (576)
T TIGR02204 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET 521 (576)
T ss_pred HHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887764
No 327
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=1.2e-26 Score=225.79 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=117.6
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||++.|++..+. +++|+||+|++|++++|+|+||||||||+|+|+|+.+ |++|+ .+++...
T Consensus 455 ~i~~~~vsf~y~~~~~~--il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 455 AITFENIRFRYAPDSPE--VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred eEEEEEEEEEcCCCCcc--ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence 58999999999653233 4599999999999999999999999999999999998 99998 5555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------cCC----ccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~lS~G~k 214 (255)
+..+++ +.++.+.+. -+..+|+.. + .++.....+.++++..++ +.+ .....||||||
T Consensus 530 r~~i~~-v~q~~~lf~---~ti~eNi~~-----~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~ 599 (694)
T TIGR01846 530 RRQMGV-VLQENVLFS---RSIRDNIAL-----C-NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR 599 (694)
T ss_pred HHhCeE-EccCCeehh---hhHHHHHhc-----C-CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHH
Confidence 123454 454443322 133232211 1 112333444444444332 222 23457999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus 600 qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~ 638 (694)
T TIGR01846 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE 638 (694)
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 328
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.93 E-value=2.6e-26 Score=202.73 Aligned_cols=175 Identities=15% Similarity=0.195 Sum_probs=129.9
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC------Cc-cCCCCCC
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK------AS-SFDSQVK 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~------G~-~~~~~~~ 147 (255)
+++|+++||+..|+.....+.++++|||+|++||.+||+|+||||||-..+.|.+++ |.. |+ .|++...
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LL----p~~~~~~~sg~i~f~G~dl 79 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL----PSPAAAHPSGSILFDGEDL 79 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhc----CCCcccCccceeEEcChhh
Confidence 578999999999975434455779999999999999999999999999999999999 653 33 3333211
Q ss_pred ------------CCCeEEEEecCCCCCCCccCCcccChHH-HHHhcCCCCCccHHHHHHHHHhhccc-----CCccCCCC
Q 025293 148 ------------PPDVATVLPMDGFHLYLSQLDAMEDPKE-AHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSF 209 (255)
Q Consensus 148 ------------~~~~g~~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~l 209 (255)
..+++. |++....--++-.+....+.+ +....++.......+..++++.+++. .+.|+++|
T Consensus 80 l~~se~~lr~iRG~~I~M-IFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeL 158 (534)
T COG4172 80 LAASERQLRGVRGNKIGM-IFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHEL 158 (534)
T ss_pred hcCCHHHHhhhcccceEE-EecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCccc
Confidence 123444 443332211111122222222 22334555445566778999999987 46789999
Q ss_pred CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||||+|||+||+||+.+|++||.||||..||...+.++.+++.+.
T Consensus 159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~L 203 (534)
T COG4172 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKEL 203 (534)
T ss_pred CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999764
No 329
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.6e-26 Score=210.51 Aligned_cols=161 Identities=12% Similarity=0.082 Sum_probs=118.1
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (255)
.++++||++.|++.+ + +++|+||++++|+.++|+|+||||||||+++|+|+++ |+.|+ .+++....
T Consensus 320 ei~~~~l~~~y~~g~-~--~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 320 EISLENLSFRYPDGK-P--ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred eeeecceEEecCCCC-c--ccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHH
Confidence 455679999998852 3 5599999999999999999999999999999999998 89998 45543221
Q ss_pred -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc--------CCccC----CCCCcccc
Q 025293 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--------GSVYA----PSFDHGVG 214 (255)
Q Consensus 149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~--------~~~~~----~~lS~G~k 214 (255)
.+... +.+..+-+.. +..+ +..+ ..+...+.+..+++..++. .+..+ ..|||||+
T Consensus 394 ~k~i~~-v~Q~p~lf~g---Tire-------Ni~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~ 462 (559)
T COG4988 394 RKQISW-VSQNPYLFAG---TIRE-------NILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQA 462 (559)
T ss_pred HhHeee-eCCCCccccc---cHHH-------HhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHH
Confidence 12333 4444443221 3323 3222 1223445566666665543 23333 35999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||++||++..+++++|+||||++||.++.+.+.+.+.+.
T Consensus 463 QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l 502 (559)
T COG4988 463 QRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502 (559)
T ss_pred HHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888653
No 330
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=5.2e-27 Score=189.37 Aligned_cols=169 Identities=16% Similarity=0.211 Sum_probs=126.3
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC--CC----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--KP---- 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~--~~---- 148 (255)
.+++++||+++|++.. +++++||+|.+||.-+|||||||||||+|.+|+|..+ |+.|+ ++++.. ..
T Consensus 4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~ 76 (249)
T COG4674 4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH 76 (249)
T ss_pred ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence 5799999999999954 7799999999999999999999999999999999998 99999 565522 11
Q ss_pred ----CCeEEEEecCCCCCCCccCCcccChHHHHHhc-CC-------CCCccHHHHHHHHHhhcccC--CccCCCCCcccc
Q 025293 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA-------PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVG 214 (255)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~k 214 (255)
.-+|.-++.+.. + ..+++.+|++...... ++ .......++.+++..+++.. +.....||+|||
T Consensus 77 ~IAr~GIGRKFQ~PtV--f-e~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK 153 (249)
T COG4674 77 RIARAGIGRKFQKPTV--F-ENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153 (249)
T ss_pred HHHHhccCccccCCee--h-hhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence 112221111111 1 2356777666543221 11 11122335667788777764 445668999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|++.|++.++.+|++|++|||++|+-.....+..+++...
T Consensus 154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~l 193 (249)
T COG4674 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL 193 (249)
T ss_pred hhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988753
No 331
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=9.3e-27 Score=180.83 Aligned_cols=168 Identities=14% Similarity=0.056 Sum_probs=127.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CC
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~ 149 (255)
++.++||+...++.. .|.|+||+|.+|||+.|+||+|||||||+..+.|.+...|..+|+ .++++.. ..
T Consensus 2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 578899998888754 569999999999999999999999999999999999866666788 4444321 34
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~ 227 (255)
.+|. +.++...++. +++.+++.+.... .+............++..++. ....+.++|||||.||++.|+|...|
T Consensus 78 q~Gi-LFQD~lLFph--lsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~P 153 (213)
T COG4136 78 QIGI-LFQDALLFPH--LSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQP 153 (213)
T ss_pred heee-eecccccccc--cccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCc
Confidence 4665 5666654433 6666665442211 011111223345677777776 35667899999999999999999999
Q ss_pred cEEEEcCCCCCCChhHHHHHHHHHH
Q 025293 228 KVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 228 ~illlDep~~~LD~~~~~~l~~ll~ 252 (255)
+.+++||||+.||..-+.++++++-
T Consensus 154 k~lLLDEPFS~LD~ALR~qfR~wVF 178 (213)
T COG4136 154 KALLLDEPFSRLDVALRDQFRQWVF 178 (213)
T ss_pred ceeeeCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 332
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.2e-26 Score=196.33 Aligned_cols=154 Identities=12% Similarity=0.128 Sum_probs=122.7
Q ss_pred CchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC------------CC
Q 025293 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------------KP 148 (255)
Q Consensus 82 ~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~------------~~ 148 (255)
|+.+.+|+.. -+++|..+...+++|.|+||||||||+|+|+|+.+ |++|. .+++.+ .+
T Consensus 5 ~~~~~lG~~~------l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~ 75 (352)
T COG4148 5 NFRQRLGNFA------LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK 75 (352)
T ss_pred ehhhhcCceE------EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence 5677777632 47899998878999999999999999999999999 99998 344421 13
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~ 226 (255)
..+|+ ++++...++. +++..|+.+..... ....+..+.+.+++. .++++..|||||||||+|+|||...
T Consensus 76 RriGY-VFQDARLFpH--~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~ 146 (352)
T COG4148 76 RRIGY-VFQDARLFPH--YTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred heeee-Eeeccccccc--eEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcC
Confidence 45787 6666654443 67777776655432 233455677777776 5788999999999999999999999
Q ss_pred CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|++|+||||++.||.+-+.+++..++.
T Consensus 147 P~LLLmDEPLaSLD~~RK~EilpylER 173 (352)
T COG4148 147 PELLLMDEPLASLDLPRKREILPYLER 173 (352)
T ss_pred CCeeeecCchhhcccchhhHHHHHHHH
Confidence 999999999999999999999988865
No 333
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.93 E-value=1.7e-26 Score=219.39 Aligned_cols=159 Identities=14% Similarity=-0.002 Sum_probs=112.8
Q ss_pred eEEecCchheehhhh-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~-~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (255)
.|+++||++.|++.. ....+|+|+||++++|++++|+||||||||||+++|+|+.+ |++|+ .+++....
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 589999999997521 01124599999999999999999999999999999999998 99998 44442211
Q ss_pred --CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCC--------ccCCCCCcccccchh
Q 025293 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS--------VYAPSFDHGVGDPVE 218 (255)
Q Consensus 149 --~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~lS~G~kqrv~ 218 (255)
...+. +.++.+.+.. +..++ ..+......+.++++.+++... .....||||||||++
T Consensus 414 ~~~~i~~-v~q~~~lf~~---ti~~n---------~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRla 480 (555)
T TIGR01194 414 YRDLFSA-IFADFHLFDD---LIGPD---------EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLA 480 (555)
T ss_pred HHhhCcE-EccChhhhhh---hhhcc---------cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHH
Confidence 11232 3333221110 11111 0112233455667777665421 123579999999999
Q ss_pred hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll 251 (255)
+||+++.+|+++|+||||++||+.+.+.+.+.+
T Consensus 481 laRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 481 LICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 999999999999999999999999999987643
No 334
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.5e-26 Score=185.31 Aligned_cols=124 Identities=21% Similarity=0.306 Sum_probs=96.0
Q ss_pred ecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCC
Q 025293 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 159 (255)
Q Consensus 80 v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~ 159 (255)
++++++.|.+ +. +++++||+|++|++++|+|+||||||||+++|+|+++ |++| . +.+++
T Consensus 2 ~~~~~~~~~~--~~--~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G-------------~-i~~~~ 60 (157)
T cd00267 2 IENLSFRYGG--RT--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSG-------------E-ILIDG 60 (157)
T ss_pred eEEEEEEeCC--ee--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcc-------------E-EEECC
Confidence 5788999976 33 5599999999999999999999999999999999985 5444 4 45555
Q ss_pred CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCC
Q 025293 160 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (255)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~L 239 (255)
..... .. ........++. ++||+||+||++++++++.+|+++|+||||++|
T Consensus 61 ~~~~~-----~~-~~~~~~~i~~~-----------------------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~l 111 (157)
T cd00267 61 KDIAK-----LP-LEELRRRIGYV-----------------------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGL 111 (157)
T ss_pred EEccc-----CC-HHHHHhceEEE-----------------------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 42211 00 00111112211 119999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 025293 240 DGGVWKDVSSMFDE 253 (255)
Q Consensus 240 D~~~~~~l~~ll~~ 253 (255)
|..++..+.+++.+
T Consensus 112 D~~~~~~l~~~l~~ 125 (157)
T cd00267 112 DPASRERLLELLRE 125 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998865
No 335
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=4e-26 Score=186.06 Aligned_cols=120 Identities=15% Similarity=0.058 Sum_probs=91.1
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 175 (255)
+|+|+||+|++|++++|+||||||||||||+|. +++|+ +.+.+.... ..
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~--------------v~~~~~~~~------~~---- 58 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGK--------------ARLISFLPK------FS---- 58 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCc--------------EEECCcccc------cc----
Confidence 569999999999999999999999999999884 33442 222222100 00
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccC--CcEEEEcCCCCCCChhHHHHHHHH
Q 025293 176 AHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSM 250 (255)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~--~~illlDep~~~LD~~~~~~l~~l 250 (255)
.....+..+ .++++.+++. .+.++..||+||+||+++|++++.+ |+++|+|||+++||+..++.+.++
T Consensus 59 -~~~~~~~~q------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~ 131 (176)
T cd03238 59 -RNKLIFIDQ------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEV 131 (176)
T ss_pred -cccEEEEhH------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 000111000 4567777764 4577889999999999999999999 999999999999999999999998
Q ss_pred HHh
Q 025293 251 FDE 253 (255)
Q Consensus 251 l~~ 253 (255)
+.+
T Consensus 132 l~~ 134 (176)
T cd03238 132 IKG 134 (176)
T ss_pred HHH
Confidence 875
No 336
>PLN03073 ABC transporter F family; Provisional
Probab=99.93 E-value=3.5e-26 Score=221.74 Aligned_cols=174 Identities=12% Similarity=0.036 Sum_probs=110.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc--CCCCCCCCC--
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDSQVKPPD-- 150 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~--~~~~~~~~~-- 150 (255)
+.+|+++|+++.|++ +. +|+|+||+|.+|+++||+|+||||||||||+|+|......|++|++ +.+......
T Consensus 175 ~~~I~i~nls~~y~~--~~--ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 175 IKDIHMENFSISVGG--RD--LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT 250 (718)
T ss_pred ceeEEEceEEEEeCC--CE--EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC
Confidence 458999999999986 34 5599999999999999999999999999999999641012666641 111100000
Q ss_pred e-------------------EEEEecCC-----------CCCCCccCCcc---cChHHHHHhcCCCCC-ccHHHHHHHHH
Q 025293 151 V-------------------ATVLPMDG-----------FHLYLSQLDAM---EDPKEAHARRGAPWT-FNPLLLLNCLK 196 (255)
Q Consensus 151 ~-------------------g~~i~~~~-----------~~~~~~~l~~~---~~~~~~~~~~~~~~~-~~~~~~~~~l~ 196 (255)
. +. +.+.. +.......+.. +........++.... .....+..++.
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~-~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQL-VAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH-HHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 0 00 00000 00000000000 000000000000000 11223455666
Q ss_pred hhccc---CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 197 NLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 197 ~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.+++. .+.++..|||||+||++||++|+.+|++|||||||++||+.++..+.++|.+
T Consensus 330 ~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~ 389 (718)
T PLN03073 330 GLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK 389 (718)
T ss_pred HCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 67764 3567889999999999999999999999999999999999999999998865
No 337
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.93 E-value=3.2e-26 Score=218.15 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=116.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
-|+++||++.|++. ++ +++|+||++++||++||+||||||||||+++|.++.+ |++|+ .+++...
T Consensus 328 ~I~f~~vsf~y~~~-~~--vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 328 SIEFENVSFSYPGK-KP--VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred eEEEEEEEEEcCCC-Cc--cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHHH
Confidence 48999999999842 34 4599999999999999999999999999999999998 99999 4544221
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHH---------hhcccCCcc----CCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVY----APSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~~~----~~~lS~G~k 214 (255)
+..++. +.++.+.+. -++.+|+.+. .+ +...+++.++++ ++-.+.+.. ...||||||
T Consensus 402 r~~I~~-V~Qd~~LF~---~TI~~NI~~g-----~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 402 RKRIGI-VSQDPLLFS---GTIRENIALG-----RP-DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred HHhccE-Ecccceeec---ccHHHHHhcC-----CC-CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 234553 665554332 1333333221 11 122333333333 331122333 347999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~ 252 (255)
||+++||++..+|++|||||||+.||..+...+.+.+.
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~ 509 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALK 509 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH
Confidence 99999999999999999999999999999999998885
No 338
>PRK13409 putative ATPase RIL; Provisional
Probab=99.93 E-value=4.5e-26 Score=217.08 Aligned_cols=155 Identities=15% Similarity=0.049 Sum_probs=110.0
Q ss_pred CchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc------------CCCCCCC-
Q 025293 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVKP- 148 (255)
Q Consensus 82 ~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~------------~~~~~~~- 148 (255)
++++.|+.+ . ++|++++ .+++|+++||+||||||||||+|+|+|+++ |++|++ +.+....
T Consensus 78 ~~~~~yg~~--~-~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 78 EPVHRYGVN--G-FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred CceEEecCC--c-eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHHH
Confidence 378999862 1 2569999 899999999999999999999999999998 999984 3222100
Q ss_pred ---------CCeEEEEecCCCCCCCc--cCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCccccc
Q 025293 149 ---------PDVATVLPMDGFHLYLS--QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ---------~~~g~~i~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kq 215 (255)
...+. ...+..+... ..++.+++ .. ......+.++++.+++. .++.+..|||||+|
T Consensus 151 ~~~~~~~~~~~~~~--~~q~~~~~p~~~~~tv~e~l-------~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 151 YFKKLYNGEIKVVH--KPQYVDLIPKVFKGKVRELL-------KK--VDERGKLDEVVERLGLENILDRDISELSGGELQ 219 (590)
T ss_pred HHHHHhccCcceee--cccchhhhhhhhcchHHHHH-------Hh--hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 00111 0111110000 00111111 00 01123456778888775 46788999999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|++||++|+.+|++|||||||++||+..+..+.++|.+.
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l 258 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL 258 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998764
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.93 E-value=8.7e-26 Score=232.37 Aligned_cols=176 Identities=12% Similarity=0.090 Sum_probs=126.9
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----CCC
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPD 150 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----~~~ 150 (255)
.+++++||++.|+.......+|+|||++|++|+++||+|||||||||||++|+|+.+...|++|+ .+++... +..
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 36899999999952111112569999999999999999999999999999999998411246788 4554322 223
Q ss_pred eEEEEecCCCCCCCccCCcccChHHHHHhcC---CCCCccHHHHHHHHHhhccc--CCccCC----CCCcccccchhhhh
Q 025293 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRG---APWTFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVEDDI 221 (255)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~--~~~~~~----~lS~G~kqrv~la~ 221 (255)
.|+ +.+++... ..+++.+++.+...... .........+.++++.+++. .+..+. .||||||||++||+
T Consensus 838 i~y-v~Q~~~~~--~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 838 IGY-VQQQDLHL--PTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred eee-ecccccCC--CCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 455 45443322 23677777776544321 11111123456788888775 344444 69999999999999
Q ss_pred hhccCCc-EEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 222 LVGLQHK-VVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 222 ~l~~~~~-illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|+.+|+ ||+|||||++||..+...+.++|++.
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l 948 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL 948 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 9999997 99999999999999999999998764
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.93 E-value=1.1e-25 Score=232.01 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=120.4
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cC-CCCCC-------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF-DSQVK------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~-~~~~~------- 147 (255)
.|+++||++.|++.. ...+|+|+||+|++|+++||+||||||||||+++|+|++. |++|+ .+ ++...
T Consensus 382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence 589999999997521 1225699999999999999999999999999999999998 99999 55 33211
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhc-C--------------------------------------------
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-------------------------------------------- 181 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~-------------------------------------------- 181 (255)
+..+|. +.++...+. .++.+++.+..... +
T Consensus 458 lr~~Ig~-V~Q~~~LF~---~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 458 WRSKIGV-VSQDPLLFS---NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred HHHhccE-ecccccchh---ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 122454 454433222 24555544321000 0
Q ss_pred ------CCCCccHHHHHHHHHhhccc-------------CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChh
Q 025293 182 ------APWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 182 ------~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~ 242 (255)
.........+.++++.+++. .......||||||||++|||||+.+|+||||||||++||+.
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 00012223445555544332 12346789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 025293 243 VWKDVSSMFDEK 254 (255)
Q Consensus 243 ~~~~l~~ll~~~ 254 (255)
+...+.+.|++.
T Consensus 614 se~~i~~~L~~~ 625 (1466)
T PTZ00265 614 SEYLVQKTINNL 625 (1466)
T ss_pred HHHHHHHHHHHH
Confidence 999999988753
No 341
>PLN03232 ABC transporter C family member; Provisional
Probab=99.92 E-value=1.6e-25 Score=232.05 Aligned_cols=162 Identities=15% Similarity=0.083 Sum_probs=120.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++..++ +|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+ .+++...
T Consensus 1234 ~I~f~nVsf~Y~~~~~~--vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPP--VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred cEEEEEEEEEECCCCCc--ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence 59999999999653233 4599999999999999999999999999999999998 99999 5555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~k 214 (255)
+...+. +.++.+.+. -+..+ +.........+++.++++..++. .+. ....||||||
T Consensus 1309 R~~i~i-VpQdp~LF~---gTIr~-------NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1377 (1495)
T PLN03232 1309 RRVLSI-IPQSPVLFS---GTVRF-------NIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQR 1377 (1495)
T ss_pred HhhcEE-ECCCCeeeC---ccHHH-------HcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHH
Confidence 223454 666554332 13333 33332234445566666654432 222 2357999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++||||+.+|+||||||||+.||..+.+.+.+.+++.
T Consensus 1378 QrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~ 1417 (1495)
T PLN03232 1378 QLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREE 1417 (1495)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888653
No 342
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=2e-25 Score=230.17 Aligned_cols=171 Identities=14% Similarity=0.103 Sum_probs=111.3
Q ss_pred eEEecCchheehhhh-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-C-C----------
Q 025293 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-F-D---------- 143 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~-~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~-~---------- 143 (255)
-|+++||+++|++.. ++ +|+|+||+|++|+++||+||||||||||+++|.|++. |+.|.. . .
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~--vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~ 1239 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVP--IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNE 1239 (1466)
T ss_pred eEEEEEEEEECCCCCCCc--cccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Cccccccccccccccccccc
Confidence 489999999996421 23 5699999999999999999999999999999999997 742210 0 0
Q ss_pred -----------------------------CCCCCCCeEEEEecCCCCCCCccCC--------cccCh----HHHHHhcCC
Q 025293 144 -----------------------------SQVKPPDVATVLPMDGFHLYLSQLD--------AMEDP----KEAHARRGA 182 (255)
Q Consensus 144 -----------------------------~~~~~~~~g~~i~~~~~~~~~~~l~--------~~~~~----~~~~~~~~~ 182 (255)
.....++.|. |.++|.++..-... +.+++ .-++++..+
T Consensus 1240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~ 1318 (1466)
T PTZ00265 1240 QDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGK-ILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKF 1318 (1466)
T ss_pred cccccccccccccccccccccccccccccccccCCCCCe-EEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhc
Confidence 0001123444 44454433210000 00000 001222222
Q ss_pred C-CCccHHHHHHHHHhhcc---------cCCc----cCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHH
Q 025293 183 P-WTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (255)
Q Consensus 183 ~-~~~~~~~~~~~l~~l~~---------~~~~----~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~ 248 (255)
. ++...+.+..+++..++ +.+. ....||||||||++|||||+.+|+||||||||+.||..+.+.+.
T Consensus 1319 g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~ 1398 (1466)
T PTZ00265 1319 GKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIE 1398 (1466)
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 1 12233444444443332 1232 33579999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 025293 249 SMFDE 253 (255)
Q Consensus 249 ~ll~~ 253 (255)
+.|+.
T Consensus 1399 ~~L~~ 1403 (1466)
T PTZ00265 1399 KTIVD 1403 (1466)
T ss_pred HHHHH
Confidence 88865
No 343
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=2.8e-25 Score=218.85 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=113.7
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
-|+++||++.|+.. +.+.+++|+||+|++|+.+|||||+||||||.+.+|-.+.. |++|. .+++...
T Consensus 987 ~I~~~~V~F~YPsR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence 48999999999874 34557799999999999999999999999999999999997 88776 3333221
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHh---------hcccCCcc----CCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVY----APSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~~~~----~~~lS~G~k 214 (255)
+...|- |.+....+. -+..+|+.+ |. ......++.+.++. +-.+-+.. ..+||||||
T Consensus 1063 R~~i~l-VsQEP~LF~---~TIrENI~Y-----G~-~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQK 1132 (1228)
T KOG0055|consen 1063 RKQIGL-VSQEPVLFN---GTIRENIAY-----GS-EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQK 1132 (1228)
T ss_pred HHhcce-eccCchhhc---ccHHHHHhc-----cC-CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHH
Confidence 111222 222111111 122222222 11 11223333333332 11122333 458999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+|||||++.+|+||||||-|+.||.++.+.+.+.||..
T Consensus 1133 QRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a 1172 (1228)
T KOG0055|consen 1133 QRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA 1172 (1228)
T ss_pred HHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998863
No 344
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=3.1e-25 Score=230.67 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=120.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|.+..++ +|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+ .+++...
T Consensus 1237 ~I~f~nVsf~Y~~~~~~--VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPP--VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred cEEEEEEEEEeCCCCCc--eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence 59999999999653223 5599999999999999999999999999999999998 99999 5555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------cCCc----cCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~lS~G~k 214 (255)
+...+. +.++.+.+. -++.+ +.........+++.++++..++ +.+. ....||||||
T Consensus 1312 R~~Isi-VpQdp~LF~---GTIre-------NLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130 1312 RKVLGI-IPQAPVLFS---GTVRF-------NLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred HhccEE-ECCCCcccc---ccHHH-------HhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence 223454 666655332 13333 3222223344555666655443 2222 2347999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||++|||||+.+|+||||||+|+.||..+.+.+.+.|++
T Consensus 1381 QrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130 1381 QLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988875
No 345
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=2e-25 Score=182.65 Aligned_cols=172 Identities=18% Similarity=0.132 Sum_probs=123.8
Q ss_pred eEEecCchheehhh---hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CCCC--
Q 025293 77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VKPP-- 149 (255)
Q Consensus 77 ~l~v~~lsk~y~~~---~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~~~-- 149 (255)
|+++.|+.+.|... .++ +|+++|++|.+|+++.|+|.||||||||++.|+|.+. |++|+ .+++. +.+.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~--~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~ 75 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKR--ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSV 75 (263)
T ss_pred CcccccceeeecCCChhHHH--HHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCH
Confidence 46778888888542 233 5599999999999999999999999999999999998 99998 44442 2211
Q ss_pred -----CeEEEEecCCCCCCCccCCcccChHHHHHh---cCCCCC---ccHHHHHHHHHhhccc----CCccCCCCCcccc
Q 025293 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWT---FNPLLLLNCLKNLRNQ----GSVYAPSFDHGVG 214 (255)
Q Consensus 150 -----~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~lS~G~k 214 (255)
.... ++++...-..+.+++.+|......+ +|+... .....+..-+..++++ ...++.-||||||
T Consensus 76 ~~RA~~lar-VfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQR 154 (263)
T COG1101 76 AKRANLLAR-VFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQR 154 (263)
T ss_pred HHHhhHHHH-HhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHH
Confidence 1122 3344333333457777777655443 333221 1122334445555554 4567788999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|-+++++|....|+||+|||-|+.|||...+.++++-.+.
T Consensus 155 QalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~ki 194 (263)
T COG1101 155 QALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKI 194 (263)
T ss_pred HHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999888876554
No 346
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=7.4e-25 Score=199.32 Aligned_cols=164 Identities=19% Similarity=0.166 Sum_probs=124.3
Q ss_pred CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEE
Q 025293 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~ 153 (255)
+.+++.+.|+++.|.++. . ++++++|-|..++.+++|||||||||||||++.|.+. |..|.+ ..+.
T Consensus 386 p~pvi~~~nv~F~y~~~~-~--iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~v--------s~~~ 451 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNP-M--IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMV--------SRHS 451 (614)
T ss_pred CCCeEEEeccccCCCCcc-h--hhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccc--------cccc
Confidence 357899999999998742 3 4599999999999999999999999999999999998 988852 1111
Q ss_pred EEecCCCCCCCcc-CCcc-cChHHHHHhcCCCCCccHHHHHHHHHhhcccC---CccCCCCCcccccchhhhhhhccCCc
Q 025293 154 VLPMDGFHLYLSQ-LDAM-EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 154 ~i~~~~~~~~~~~-l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
...+..|.+...+ ++.. ....+....+ +.......+..++.++++.. ..++.+||.|||.||.+|+.++..|.
T Consensus 452 H~~~~~y~Qh~~e~ldl~~s~le~~~~~~--~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 452 HNKLPRYNQHLAEQLDLDKSSLEFMMPKF--PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred cccchhhhhhhHhhcCcchhHHHHHHHhc--cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCc
Confidence 1222333332211 1111 1122222222 22345667889999999984 46778999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|||||||++||.++...+.+.|.+
T Consensus 530 lLlLDEPtnhLDi~tid~laeaiNe 554 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDALAEAINE 554 (614)
T ss_pred EEEecCCCcCCCchhHHHHHHHHhc
Confidence 9999999999999999999998865
No 347
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.92 E-value=3.6e-25 Score=197.29 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=100.7
Q ss_pred EECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC
Q 025293 112 LAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (255)
Q Consensus 112 LiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 184 (255)
|+||||||||||+|+|+|+++ |++|+ .+++... ...+|+ +.++...+ ..+++.+++.+.....+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~-v~q~~~l~--~~~tv~enl~~~~~~~~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINM-VFQSYALF--PHMTVEENVAFGLKMRKVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEE-EecCcccc--CCCcHHHHHHHHHhhcCCCH
Confidence 689999999999999999998 99999 4544321 123555 44433222 22567676665443333221
Q ss_pred CccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 185 TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 185 ~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
......+.++++.+++. .++++..|||||+||+++|++|+.+|++|||||||++||+..+..+.++|.+
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~ 145 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT 145 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 11223456788888775 4677889999999999999999999999999999999999999999998865
No 348
>PTZ00243 ABC transporter; Provisional
Probab=99.92 E-value=8.4e-25 Score=227.00 Aligned_cols=161 Identities=11% Similarity=0.080 Sum_probs=121.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|.+..+. +|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+ .+++...
T Consensus 1308 ~I~f~nVsf~Y~~~~~~--vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPL--VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred eEEEEEEEEEeCCCCCc--eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence 59999999999763223 5599999999999999999999999999999999998 99999 4555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~k 214 (255)
+..++. +.++.+.+. -++.+|+ .........++..+++..++. .+. ....||||||
T Consensus 1383 R~~I~i-VpQdp~LF~---gTIreNI-------dp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1383 RRQFSM-IPQDPVLFD---GTVRQNV-------DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred HhcceE-ECCCCcccc---ccHHHHh-------CcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 233454 666655432 1333333 222234456666777765543 222 2357999999
Q ss_pred cchhhhhhhccC-CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~-~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||++|||||+.+ |+||||||||+.||+.+.+.+.+.|.+
T Consensus 1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243 1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999985 899999999999999999999988865
No 349
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-24 Score=179.90 Aligned_cols=171 Identities=19% Similarity=0.139 Sum_probs=117.5
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+|+++||+...++. +. +|++||++|++||+++|+||||||||||.++|+|.-... +++|+ .+++...
T Consensus 1 m~~L~I~dLhv~v~~~-ke--ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~-Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 1 MMMLEIKDLHVEVEGK-KE--ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE-VTEGEILFDGEDILELSPD 76 (251)
T ss_pred CceeEEeeeEEEecCc-hh--hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce-EecceEEECCcccccCCHh
Confidence 4689999999999873 24 459999999999999999999999999999999975221 56777 4554321
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHh----cCCCC--CccHHHHHHHHHhhcccC---CccCC-CCCcccccc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPW--TFNPLLLLNCLKNLRNQG---SVYAP-SFDHGVGDP 216 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~--~~~~~~~~~~l~~l~~~~---~~~~~-~lS~G~kqr 216 (255)
+...|..+.+++. .. .+......+.+.- .+... ......+.+.++.+++.. +++++ -||||||+|
T Consensus 77 ERAr~GifLafQ~P-~e---i~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR 152 (251)
T COG0396 77 ERARAGIFLAFQYP-VE---IPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKR 152 (251)
T ss_pred HHHhcCCEEeecCC-cc---CCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHH
Confidence 1223433332221 11 2222222332211 11111 011234456677777653 44444 589999999
Q ss_pred hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
..++.+++.+|++.|||||-+|||..+-+.+.+.+..
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~ 189 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINA 189 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888777654
No 350
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=7e-25 Score=217.45 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=138.7
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (255)
...+.++|++|.|+...+ +++++++.|++||+.|++|+|||||||+++||+|..+ |++|+ .+.+....
T Consensus 562 ~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 562 SSALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDF 635 (885)
T ss_pred cceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccch
Confidence 467899999999988432 6699999999999999999999999999999999998 99999 44443221
Q ss_pred ----CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
...|+. .+.+. ....++..+......+.+|++.......+..+++.+++. .+++++.||||+|+|+.+|.+
T Consensus 636 ~~~~~~iGyC-PQ~d~--l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 636 QQVRKQLGYC-PQFDA--LWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIA 712 (885)
T ss_pred hhhhhhcccC-Cchhh--hhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHH
Confidence 124542 22221 123478888888888889986544445567788888876 567789999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++.+|++++||||++|+||..++.+++++.+.
T Consensus 713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~ 744 (885)
T KOG0059|consen 713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARL 744 (885)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999764
No 351
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.91 E-value=1e-24 Score=226.50 Aligned_cols=161 Identities=15% Similarity=0.058 Sum_probs=121.1
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++..++ +|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+ .+++...
T Consensus 1284 ~I~f~nVsf~Y~~~~~~--vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDL--VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred cEEEEEEEEEeCCCCcc--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence 59999999999753223 5699999999999999999999999999999999998 99998 5555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCcc----CCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~----~~~lS~G~k 214 (255)
+...+. +.++.+.+.. +..+|+ ........+++.++++..++. .+.. ...||||||
T Consensus 1359 R~~i~i-VpQdp~LF~g---TIr~NL-------dp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1359 RFKITI-IPQDPVLFSG---SLRMNL-------DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred HhcCeE-ECCCCcccCc---cHHHHc-------CcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 223454 6666554331 333332 211234445566666655432 2322 356999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||||+.+|+||||||||+.||..+...+.+.|++
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988865
No 352
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.91 E-value=1.1e-24 Score=209.15 Aligned_cols=152 Identities=14% Similarity=0.073 Sum_probs=114.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCc-cCCCCCC-----CCCeEEEEecCCCCCCCcc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQ 166 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~---~G~-~~~~~~~-----~~~~g~~i~~~~~~~~~~~ 166 (255)
+|+|+|+++++||+++|+|||||||||||++|+|..+ |. +|+ .+++... +...|+ +.+++... ..
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~y-v~Q~~~~~--~~ 113 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAY-VQQDDLFI--PT 113 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhcee-eccccccC--cc
Confidence 5599999999999999999999999999999999885 53 677 4554321 123455 45444332 23
Q ss_pred CCcccChHHHHHhcCCCC----CccHHHHHHHHHhhcccC--CccCC------CCCcccccchhhhhhhccCCcEEEEcC
Q 025293 167 LDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQG--SVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 167 l~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~--~~~~~------~lS~G~kqrv~la~~l~~~~~illlDe 234 (255)
+++.+++.+..... .+. ......+.++++.+++.. +..+. .+|||||||+++|++|+.+|+++++||
T Consensus 114 lTV~e~l~f~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 114 LTVREHLMFQAHLR-MPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred CcHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 67878777654432 222 122234677888888753 44443 599999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHhh
Q 025293 235 NYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 235 p~~~LD~~~~~~l~~ll~~~ 254 (255)
||++||..+...+.+.+++.
T Consensus 193 PtsgLD~~~~~~l~~~L~~l 212 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGL 212 (617)
T ss_pred CCcchhHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 353
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.91 E-value=3.4e-25 Score=173.08 Aligned_cols=118 Identities=21% Similarity=0.244 Sum_probs=82.4
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHH
Q 025293 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (255)
Q Consensus 97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~ 176 (255)
|+|+||+|++|++++|+|+||||||||+++|+|..+ |++|. +.+++..+.. ......
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~--------------i~~~~~~~~~------~~~~~~ 57 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGS--------------ILINGKDISD------IDIEEL 57 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEE--------------EEETTEEGTT------SHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---ccccc--------------cccccccccc------cccccc
Confidence 489999999999999999999999999999999996 66664 3333322211 000111
Q ss_pred HHhcCC-CCC------------ccHHHHHHHHHhhcccC--CccC----CCCCcccccchhhhhhhccCCcEEEEcCCCC
Q 025293 177 HARRGA-PWT------------FNPLLLLNCLKNLRNQG--SVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (255)
Q Consensus 177 ~~~~~~-~~~------------~~~~~~~~~l~~l~~~~--~~~~----~~lS~G~kqrv~la~~l~~~~~illlDep~~ 237 (255)
....++ ++. ........+++.+++.. ...+ ..||+||+||+++|++++.+|+++|+||||+
T Consensus 58 ~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 58 RRRIGYVPQDPQLFPGLTVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHTEEEEESSHCHHTTSBHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 111111 111 12234556677666543 3333 8999999999999999999999999999996
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.91 E-value=2.7e-24 Score=221.26 Aligned_cols=173 Identities=13% Similarity=0.075 Sum_probs=123.6
Q ss_pred eEEecCchheehhhh---------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC
Q 025293 77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV 146 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~---------~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~ 146 (255)
.+..+||++..+... ....+|+|+|+.+++|++++|+|||||||||||++|+|..... +.+|+ .+++..
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECCcc
Confidence 578899987764210 1122569999999999999999999999999999999986400 25677 444432
Q ss_pred C-----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCc----cHHHHHHHHHhhcccC--CccC-----CCCC
Q 025293 147 K-----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF----NPLLLLNCLKNLRNQG--SVYA-----PSFD 210 (255)
Q Consensus 147 ~-----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~--~~~~-----~~lS 210 (255)
. ....|+ +.+++... ..+++.+++.+..... .+... ....+.++++.+++.. +..+ ..||
T Consensus 946 ~~~~~~~~~igy-v~Q~d~~~--~~lTV~E~L~~~a~lr-~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 946 KKQETFARISGY-CEQNDIHS--PQVTVRESLIYSAFLR-LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred CChHHhhhheEE-EccccccC--CCCcHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 1 123455 45544322 2367877776654322 22211 1223567888887752 3333 5799
Q ss_pred cccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 211 ~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||||||++||++|+.+|++|++||||++||..+...+++++.+.
T Consensus 1022 gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140 1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998763
No 355
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.90 E-value=5.8e-24 Score=220.40 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=121.2
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|+...+. +|+|+||+|++||++||+|++|||||||+++|.|+. +.+|+ .+++...
T Consensus 1217 ~I~f~nVs~~Y~~~~~~--vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRA--VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred eEEEEEEEEEeCCCCcc--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCCHHHH
Confidence 58999999999753234 559999999999999999999999999999999998 67888 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCcc----CCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~----~~~lS~G~k 214 (255)
+...+. +.++.+.+.. ++.+|+ ..........+.++++.+++. .+.. ...||+|||
T Consensus 1291 R~~is~-IpQdp~LF~G---TIR~NL-------dp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1291 RKAFGV-IPQKVFIFSG---TFRKNL-------DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred HhceEE-EeCCCccCcc---CHHHHh-------CcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 223454 6666654331 333333 222233456667777766552 2222 236999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++||||+.+|+||||||||++||......+.+.|.+.
T Consensus 1360 QrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~ 1399 (1490)
T TIGR01271 1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS 1399 (1490)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888653
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.90 E-value=7.7e-24 Score=219.94 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=112.2
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEE
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL 155 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i 155 (255)
.++++|+++.|++..++ +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++ .+++ +
T Consensus 636 ~i~~~~~~~~~~~~~~~--~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~y-v 704 (1522)
T TIGR00957 636 SITVHNATFTWARDLPP--TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVAY-V 704 (1522)
T ss_pred cEEEEEeEEEcCCCCCc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEEE-E
Confidence 69999999999753233 4599999999999999999999999999999999998 99997 3332 3454 4
Q ss_pred ecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHh------hcc---c----CCccCCCCCcccccchhhhhh
Q 025293 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN------LRN---Q----GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------l~~---~----~~~~~~~lS~G~kqrv~la~~ 222 (255)
.++...+. .++.+++.+ + ...+.....++++. +.. + ...+...||||||||+++|||
T Consensus 705 ~Q~~~l~~---~Ti~eNI~~-----g--~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARA 774 (1522)
T TIGR00957 705 PQQAWIQN---DSLRENILF-----G--KALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 774 (1522)
T ss_pred cCCccccC---CcHHHHhhc-----C--CccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 44433211 243333322 1 11122222222222 221 1 124467899999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~ 252 (255)
+..+|+++|+||||++||+...+.+.+.+.
T Consensus 775 l~~~~~illLDEp~saLD~~~~~~i~~~l~ 804 (1522)
T TIGR00957 775 VYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804 (1522)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHh
Confidence 999999999999999999999999988764
No 357
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=1.8e-23 Score=177.36 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=91.6
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHH-HHHHHHhcccC-----CCCCccCCCCCCCC--------CeEEEEecCCCC
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA-AEVVRRINKIW-----PQKASSFDSQVKPP--------DVATVLPMDGFH 161 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLL-k~L~Gll~~~~-----p~~G~~~~~~~~~~--------~~g~~i~~~~~~ 161 (255)
+++++||+|++||++||+|+||||||||+ ..|...-+..+ |..+...+ ....+ .....+..+...
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLG-QMDKPDVDSIEGLSPAIAIDQKTTS 88 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhc-ccCccccccccCCCceEEecCCCCC
Confidence 67999999999999999999999999996 43332100000 11110000 00001 111111111111
Q ss_pred CCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCC--cEEEEcCC
Q 025293 162 LYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGN 235 (255)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~--~illlDep 235 (255)
.....++.. ....... ..+..........+.++.+++. .+.++..||+||+||+++|++|+.+| +++|+|||
T Consensus 89 -~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP 166 (226)
T cd03270 89 -RNPRSTVGT-VTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 166 (226)
T ss_pred -CCCCccHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 000001100 0000001 0111111122235677888774 46788999999999999999999998 59999999
Q ss_pred CCCCChhHHHHHHHHHHh
Q 025293 236 YLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 236 ~~~LD~~~~~~l~~ll~~ 253 (255)
|++||+..+..+.++|.+
T Consensus 167 t~gLD~~~~~~l~~~l~~ 184 (226)
T cd03270 167 SIGLHPRDNDRLIETLKR 184 (226)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 999999999999999865
No 358
>PLN03232 ABC transporter C family member; Provisional
Probab=99.90 E-value=1.6e-23 Score=217.32 Aligned_cols=154 Identities=17% Similarity=0.143 Sum_probs=112.3
Q ss_pred eEEecCchheehhh-hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE
Q 025293 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 77 ~l~v~~lsk~y~~~-~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
.++++|+++.|++. .++ +|+|+||+|++|+.++|+||+|||||||+++|+|+++ |++|.... ....+++ +
T Consensus 614 ~I~~~~vsF~y~~~~~~~--vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~---~~~~Iay-v 684 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKP--TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV---IRGSVAY-V 684 (1495)
T ss_pred cEEEEeeEEEcCCCCCCc--eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE---ecCcEEE-E
Confidence 58999999999752 123 4599999999999999999999999999999999998 88885211 1234454 5
Q ss_pred ecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccccchhhhhh
Q 025293 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~kqrv~la~~ 222 (255)
.++.+-+. -++.+|+.+ ...++.+.+.++++..++. .+. ....||||||||+++|||
T Consensus 685 ~Q~p~Lf~---gTIreNI~f-------g~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 754 (1495)
T PLN03232 685 PQVSWIFN---ATVRENILF-------GSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARA 754 (1495)
T ss_pred cCcccccc---ccHHHHhhc-------CCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHH
Confidence 55544332 244443332 2223445555555544432 122 234799999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ 249 (255)
+..+|+|+||||||++||+.+.+++.+
T Consensus 755 ly~~~~IlLLDEptSaLD~~t~~~I~~ 781 (1495)
T PLN03232 755 VYSNSDIYIFDDPLSALDAHVAHQVFD 781 (1495)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHH
Confidence 999999999999999999998877754
No 359
>PLN03130 ABC transporter C family member; Provisional
Probab=99.89 E-value=2.6e-23 Score=216.37 Aligned_cols=153 Identities=19% Similarity=0.184 Sum_probs=112.3
Q ss_pred eEEecCchheehhh-hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CccCCCCCCCCCeEEE
Q 025293 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATV 154 (255)
Q Consensus 77 ~l~v~~lsk~y~~~-~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~-G~~~~~~~~~~~~g~~ 154 (255)
.|+++|+++.|++. .++ +|+|+||+|++|++++|+||+|||||||+++|+|+++ |++ |++.- ...+++
T Consensus 614 ~I~~~nvsf~y~~~~~~~--vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l----~~~Iay- 683 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERP--TLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVI----RGTVAY- 683 (1622)
T ss_pred ceEEEeeEEEccCCCCCc--eeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEE----cCeEEE-
Confidence 58999999999742 123 4599999999999999999999999999999999998 888 76321 233454
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccccchhhhh
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~kqrv~la~ 221 (255)
+.++.+-+. -++.+|+. +...++.+.+.++++..++. .+. ....||||||||+++||
T Consensus 684 v~Q~p~Lfn---gTIreNI~-------fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLAR 753 (1622)
T PLN03130 684 VPQVSWIFN---ATVRDNIL-------FGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR 753 (1622)
T ss_pred EcCccccCC---CCHHHHHh-------CCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHH
Confidence 555544332 24444333 22223445555665554432 122 23469999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ 249 (255)
|+..+|+|+||||||++||+...+++.+
T Consensus 754 Aly~~~~IlLLDEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 754 AVYSNSDVYIFDDPLSALDAHVGRQVFD 781 (1622)
T ss_pred HHhCCCCEEEECCCccccCHHHHHHHHH
Confidence 9999999999999999999988777653
No 360
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.89 E-value=1.4e-23 Score=216.16 Aligned_cols=156 Identities=13% Similarity=0.056 Sum_probs=112.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc-cCCCCCc-cCCCCCC-------CCCeEEEEecCCCCCCCcc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKAS-SFDSQVK-------PPDVATVLPMDGFHLYLSQ 166 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~-~~p~~G~-~~~~~~~-------~~~~g~~i~~~~~~~~~~~ 166 (255)
+|+|+|+.+++||+++|+||||||||||||+|+|+... .-|++|+ .+++... +..+++ +.+++... ..
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~y-v~Q~d~~~--~~ 152 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVY-NAETDVHF--PH 152 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEE-eccccccC--CC
Confidence 56999999999999999999999999999999998621 0168898 4554321 122454 44443322 23
Q ss_pred CCcccChHHHHHhcCC---CCCcc----HHH-HHHHHHhhcccC--C-----ccCCCCCcccccchhhhhhhccCCcEEE
Q 025293 167 LDAMEDPKEAHARRGA---PWTFN----PLL-LLNCLKNLRNQG--S-----VYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 167 l~~~~~~~~~~~~~~~---~~~~~----~~~-~~~~l~~l~~~~--~-----~~~~~lS~G~kqrv~la~~l~~~~~ill 231 (255)
+++.+++.+....... ..... ... ...+++.+++.. + ..+..|||||||||+||++|+.+|++++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 6888877765443210 00111 112 234677787753 2 2356799999999999999999999999
Q ss_pred EcCCCCCCChhHHHHHHHHHHhh
Q 025293 232 VDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 232 lDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||||++||..+...+.++|++.
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~l 255 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTS 255 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
No 361
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4.2e-24 Score=192.49 Aligned_cols=162 Identities=18% Similarity=0.201 Sum_probs=111.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
-|+++||++.|+.. +++ |+||||++.+|+.++|+||+|+||||++|+|..+.. .++|. .++++..
T Consensus 537 ~i~fsnvtF~Y~p~-k~v--l~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPG-KPV--LSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred eEEEEEeEEecCCC-Cce--eecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence 58999999999874 454 499999999999999999999999999999999997 77887 4554322
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHH------Hh-hcccC--C----ccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL------KN-LRNQG--S----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~-l~~~~--~----~~~~~lS~G~k 214 (255)
+..+|. +.+|-..+.+ +...++++.+ + ....+++.... ++ +.++. . .+.-.||||||
T Consensus 611 Rs~IGV-VPQDtvLFNd---TI~yNIryak-----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEK 680 (790)
T KOG0056|consen 611 RSSIGV-VPQDTVLFND---TILYNIRYAK-----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEK 680 (790)
T ss_pred HHhcCc-ccCcceeecc---eeeeheeecC-----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcch
Confidence 223443 4444332221 2222222211 1 11112221111 11 22221 1 23347999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||++||++...|.+++|||.|+.||....+++...+.+.
T Consensus 681 QRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rl 720 (790)
T KOG0056|consen 681 QRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARL 720 (790)
T ss_pred hhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999998888777654
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=99.89 E-value=2.3e-23 Score=214.46 Aligned_cols=153 Identities=15% Similarity=0.156 Sum_probs=114.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCc-cCCCCCC-----CCCeEEEEecCCCCCCCcc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQ 166 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~---~G~-~~~~~~~-----~~~~g~~i~~~~~~~~~~~ 166 (255)
+|+|+|+.|++|++++|+||||||||||||+|+|.+. |+ +|+ .+++... +...++ +.+++... ..
T Consensus 180 IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~y-v~Q~d~~~--~~ 253 (1470)
T PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAY-ISQNDVHV--GV 253 (1470)
T ss_pred eccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEE-ecccccCC--Cc
Confidence 5699999999999999999999999999999999997 77 888 4554321 223455 45444332 23
Q ss_pred CCcccChHHHHHhcCCCC----------C---------ccH---------------HHHHHHHHhhcccC-------Ccc
Q 025293 167 LDAMEDPKEAHARRGAPW----------T---------FNP---------------LLLLNCLKNLRNQG-------SVY 205 (255)
Q Consensus 167 l~~~~~~~~~~~~~~~~~----------~---------~~~---------------~~~~~~l~~l~~~~-------~~~ 205 (255)
+++.+++.+.....+... . ... .....+++.+++.. +..
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 788888777554332110 0 000 01245677777752 445
Q ss_pred CCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 206 ~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+..+||||||||.+|++++.+|+++++||||+|||..+..++.+.+.+.
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~l 382 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQI 382 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999998763
No 363
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=2.3e-23 Score=199.10 Aligned_cols=172 Identities=13% Similarity=0.112 Sum_probs=128.9
Q ss_pred eEEecCchheehhh---hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----
Q 025293 77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~---~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (255)
-+..++++....+. .+. +|+|||..+++||+.||+||+||||||||++|+|...+....+|+ .+++...
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~--iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~ 102 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKT--ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSF 102 (613)
T ss_pred eeEEEEEEEEecCCCCccce--eeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhh
Confidence 35566666555442 234 559999999999999999999999999999999998421235676 4555221
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC----CccHHHHHHHHHhhccc--CCccC-----CCCCcccccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYA-----PSFDHGVGDP 216 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~--~~~~~-----~~lS~G~kqr 216 (255)
+...|+ +.+++..... +|+.|.+.+....+ .+. ......+.++++.+++. .+..+ ..+|||||+|
T Consensus 103 ~~~s~y-V~QdD~l~~~--LTV~EtL~f~A~lr-lp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkR 178 (613)
T KOG0061|consen 103 RKISGY-VQQDDVLLPT--LTVRETLRFSALLR-LPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKR 178 (613)
T ss_pred hheeEE-Eccccccccc--ccHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhH
Confidence 234565 7777664443 78888877766543 333 33345677888888886 34444 3599999999
Q ss_pred hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|++|.-|+.+|.||++||||+|||..+..++.+++++.
T Consensus 179 vsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~l 216 (613)
T KOG0061|consen 179 VSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRL 216 (613)
T ss_pred HHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999998764
No 364
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.89 E-value=3.6e-23 Score=187.31 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=113.1
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
-.+.+++++..=.+.++++ ++++||++.+||.+|||||||||||||.|+|.|..+ |.+|. .+++-..
T Consensus 333 g~L~Ve~l~~~PPg~~~pi--l~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~ 407 (580)
T COG4618 333 GALSVERLTAAPPGQKKPI--LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQ 407 (580)
T ss_pred ceeeEeeeeecCCCCCCcc--eecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHH
Confidence 3799999988666544454 499999999999999999999999999999999998 99998 4444221
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHH---------HHHHHhhcccCCccC----CCCCccc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLRNQGSVYA----PSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~l~~~~~~~~----~~lS~G~ 213 (255)
...+|+ ..++=..+. -|+.+|+.. + ..+.+.+.+ .+++-++-.+-+..+ ..|||||
T Consensus 408 lG~hiGY-LPQdVeLF~---GTIaeNIaR----f--~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQ 477 (580)
T COG4618 408 LGRHIGY-LPQDVELFD---GTIAENIAR----F--GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ 477 (580)
T ss_pred hccccCc-CcccceecC---CcHHHHHHh----c--cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchH
Confidence 122333 222211111 133332221 1 112222222 333333333334443 4799999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++||++-.+|.+++||||-+.||......+.+.|..
T Consensus 478 RQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~ 517 (580)
T COG4618 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA 517 (580)
T ss_pred HHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888764
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.88 E-value=1.2e-22 Score=210.72 Aligned_cols=136 Identities=11% Similarity=0.157 Sum_probs=98.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEecCCCCCCCccCCcccChH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~ 174 (255)
+|+|+||+|++|++++|+|||||||||||++|+|+++ |++|+ .+++ .+++ +.+....+. .++.+++.
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iay-v~Q~~~l~~---~Ti~eNI~ 508 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISF-SPQTSWIMP---GTIKDNII 508 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEE-EeCCCccCC---ccHHHHHH
Confidence 5699999999999999999999999999999999998 99997 3332 2454 444433221 24444443
Q ss_pred HHHHhcCCCCCccHHHHH---------HHHHhhcccC----CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293 175 EAHARRGAPWTFNPLLLL---------NCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~---------~~l~~l~~~~----~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~ 241 (255)
+.. . ++..... ..++.+..+. ......||||||||+++|||+..+|+++|||||+++||+
T Consensus 509 ~g~-----~--~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 509 FGL-----S--YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred hcc-----c--cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 221 1 1111111 2222222221 234578999999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 025293 242 GVWKDVSSM 250 (255)
Q Consensus 242 ~~~~~l~~l 250 (255)
...+.+.+.
T Consensus 582 ~~~~~i~~~ 590 (1490)
T TIGR01271 582 VTEKEIFES 590 (1490)
T ss_pred HHHHHHHHH
Confidence 999999874
No 366
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=6.4e-22 Score=176.63 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=122.9
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (255)
.+++-+.+|+|.|.+. ++++ .+++|-|.=-..|||+||||.||||||++|.|-+. |..|+..... +
T Consensus 584 PPvLGlH~VtFgy~gq-kpLF--kkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnh--r------ 649 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQ-KPLF--KKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNH--R------ 649 (807)
T ss_pred CCeeecccccccCCCC-Cchh--hcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccc--e------
Confidence 4799999999999653 4544 99999999999999999999999999999999998 9999732211 1
Q ss_pred EecCCCCCCC-ccCCcccChHHH-HHhcCCCCCccHHHHHHHHHhhcccC---CccCCCCCcccccchhhhhhhccCCcE
Q 025293 155 LPMDGFHLYL-SQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 155 i~~~~~~~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~kqrv~la~~l~~~~~i 229 (255)
+.++-|++.. ..++..+.+..+ .+.+.++ ....+..+..+++.. ...+..|||||+.||++|-.-+..|+|
T Consensus 650 L~iG~FdQh~~E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDv 725 (807)
T KOG0066|consen 650 LRIGWFDQHANEALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDV 725 (807)
T ss_pred eeeechhhhhHHhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCE
Confidence 2222233221 224555544433 3333332 345677788888763 466889999999999999988999999
Q ss_pred EEEcCCCCCCChhHHHHHHHHHHh
Q 025293 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 230 lllDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||||||..||..+...+.+.|.+
T Consensus 726 lILDEPTNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 726 LILDEPTNNLDIESIDALAEAINE 749 (807)
T ss_pred EEecCCCCCcchhhHHHHHHHHHh
Confidence 999999999999999999888865
No 367
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.86 E-value=1.2e-21 Score=162.79 Aligned_cols=131 Identities=12% Similarity=0.078 Sum_probs=90.3
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc----------cCCCCCC-----CCCeEEEEecCCCCC
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS----------SFDSQVK-----PPDVATVLPMDGFHL 162 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~----------~~~~~~~-----~~~~g~~i~~~~~~~ 162 (255)
+++++++.+| +++|+||||||||||+++|+|++. |..|. ++.+... ...++. +.++...+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-vfq~~~~~ 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL-TFDNSDGR 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEE-EEEcCCCc
Confidence 6788999999 999999999999999999999985 44332 1111110 011222 11111100
Q ss_pred CCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhc----cCCcEEEEcCCCCC
Q 025293 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLF 238 (255)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~----~~~~illlDep~~~ 238 (255)
++.. ....+.++++. .-..+..+..||+||+||+++|++++ .+|+++|+|||+++
T Consensus 89 -----------------~~~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~ 147 (197)
T cd03278 89 -----------------YSII---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA 147 (197)
T ss_pred -----------------eeEE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence 0000 12234455555 22345678899999999999999986 46799999999999
Q ss_pred CChhHHHHHHHHHHhh
Q 025293 239 LDGGVWKDVSSMFDEK 254 (255)
Q Consensus 239 LD~~~~~~l~~ll~~~ 254 (255)
||+.....+.+++.+.
T Consensus 148 LD~~~~~~l~~~l~~~ 163 (197)
T cd03278 148 LDDANVERFARLLKEF 163 (197)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998764
No 368
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=6.1e-22 Score=169.42 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=46.4
Q ss_pred CccCCCCCcccccchhhhhhhc----cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 203 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 203 ~~~~~~lS~G~kqrv~la~~l~----~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.++..||+||+||+++|++++ .+|+++|+|||+++||+..+..+.+.+.+.
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~ 208 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL 208 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 3567889999999999999996 358999999999999999999999988763
No 369
>PTZ00243 ABC transporter; Provisional
Probab=99.85 E-value=1.6e-21 Score=202.63 Aligned_cols=136 Identities=16% Similarity=0.106 Sum_probs=97.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 175 (255)
+|+|+||+|++|++++|+|||||||||||++|+|+++ |++|++.- ...+++ +.+....+ . .++.+++.+
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~----~~~i~y-v~Q~~~l~-~--~Tv~enI~~ 743 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWA----ERSIAY-VPQQAWIM-N--ATVRGNILF 743 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEE----CCeEEE-EeCCCccC-C--CcHHHHHHc
Confidence 5599999999999999999999999999999999998 99997321 223555 44443321 1 244444332
Q ss_pred HHHhcCCCCCccHHHH---------HHHHHhh--ccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChh
Q 025293 176 AHARRGAPWTFNPLLL---------LNCLKNL--RNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 176 ~~~~~~~~~~~~~~~~---------~~~l~~l--~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~ 242 (255)
. ...+.... ...++.+ ++. ...+...||||||||+++||++..+|+++|||||+++||+.
T Consensus 744 ~-------~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~ 816 (1560)
T PTZ00243 744 F-------DEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816 (1560)
T ss_pred C-------ChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 1 11111111 2223333 221 23557789999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 025293 243 VWKDVSS 249 (255)
Q Consensus 243 ~~~~l~~ 249 (255)
..+.+.+
T Consensus 817 ~~~~i~~ 823 (1560)
T PTZ00243 817 VGERVVE 823 (1560)
T ss_pred HHHHHHH
Confidence 8877765
No 370
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.85 E-value=4.3e-21 Score=179.50 Aligned_cols=157 Identities=18% Similarity=0.136 Sum_probs=117.0
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCccCCCCCCCC-CeE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPP-DVA 152 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~-~G~~~~~~~~~~-~~g 152 (255)
...|.++||+..-++.. . .+++.+|+|++|+.+-|.|+||||||||+|.|+|+- |. +|++ ..| +..
T Consensus 390 ~~~i~~~nl~l~~p~~~-~--ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW----P~g~G~I-----~~P~~~~ 457 (604)
T COG4178 390 DHGITLENLSLRTPDGQ-T--LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW----PWGSGRI-----SMPADSA 457 (604)
T ss_pred cceeEEeeeeEECCCCC-e--eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC----ccCCCce-----ecCCCCc
Confidence 36899999999987743 3 459999999999999999999999999999999997 43 3431 011 110
Q ss_pred -EEEecCCCCCCCccCCcccChHHHHHhcCCCC---CccHHHHHHHHHhhccc--------CCccCCCCCcccccchhhh
Q 025293 153 -TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRNQ--------GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 153 -~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~--------~~~~~~~lS~G~kqrv~la 220 (255)
-++++-.| ++ ... .++..-+|. .+....+.++|..++++ ....-..||+|||||+++|
T Consensus 458 ~lflpQ~PY------~p---~Gt-Lre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafA 527 (604)
T COG4178 458 LLFLPQRPY------LP---QGT-LREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFA 527 (604)
T ss_pred eEEecCCCC------CC---Ccc-HHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHH
Confidence 01121111 11 111 223333332 25667788888888876 2345568999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|.+.++|++++|||-|++|||.....+.+++++
T Consensus 528 RilL~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred HHHHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 999999999999999999999999999999986
No 371
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3e-21 Score=174.99 Aligned_cols=157 Identities=12% Similarity=0.013 Sum_probs=105.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
-|.+.+++..||+ +. +|++-++++..|..+||+|+||+|||||||+|+.-.-..+|..-+ -.|..+.
T Consensus 80 Di~~~~fdLa~G~--k~--LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE---------~~g~~t~ 146 (582)
T KOG0062|consen 80 DIHIDNFDLAYGG--KI--LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQE---------VRGDDTE 146 (582)
T ss_pred ceeeeeeeeeecc--hh--hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhh---------eeccchH
Confidence 4778889999998 44 459999999999999999999999999999998711000121100 0111110
Q ss_pred --cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHH-HHHhhcccC---CccCCCCCcccccchhhhhhhccCCcEE
Q 025293 157 --MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN-CLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 157 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~---~~~~~~lS~G~kqrv~la~~l~~~~~il 230 (255)
+++.. .......+..+...+........+.. +|.-++|.. ..++..||||-|.|+++||||..+|++|
T Consensus 147 ~~~~~l~------~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlL 220 (582)
T KOG0062|consen 147 ALQSVLE------SDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLL 220 (582)
T ss_pred HHhhhhh------ccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEE
Confidence 00000 00011112221111111112233333 777888873 5678899999999999999999999999
Q ss_pred EEcCCCCCCChhHHHHHHHHHH
Q 025293 231 IVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 231 llDep~~~LD~~~~~~l~~ll~ 252 (255)
||||||+.||..+..-+.+.|.
T Consensus 221 LLDEPTNhLDv~av~WLe~yL~ 242 (582)
T KOG0062|consen 221 LLDEPTNHLDVVAVAWLENYLQ 242 (582)
T ss_pred eecCCcccchhHHHHHHHHHHh
Confidence 9999999999998888777664
No 372
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.84 E-value=9.9e-22 Score=179.02 Aligned_cols=166 Identities=13% Similarity=0.030 Sum_probs=103.8
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc---cCCCCCCCCCeE
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDSQVKPPDVA 152 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~---~~~~~~~~~~~g 152 (255)
.-+.++|+++.|.+ .. +++|+.|++.+|+.+||+|+|||||||+|++|.|-.. |..-. ++......+...
T Consensus 74 ~dvk~~sls~s~~g--~~--l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG--VE--LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---PIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred ccceeeeeeeccCC--ce--eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---CCCcccchhhhcccCCCchH
Confidence 35889999999988 33 5599999999999999999999999999999999875 53221 111110011100
Q ss_pred EEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccH-------------------HHHHHHHHhhccc---CCccCCCC
Q 025293 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNP-------------------LLLLNCLKNLRNQ---GSVYAPSF 209 (255)
Q Consensus 153 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~-------------------~~~~~~l~~l~~~---~~~~~~~l 209 (255)
..+.. ..... .......+...+.+... ++... .....++-.+++. ..+++..|
T Consensus 147 ~av~~-v~~~~---~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~ 222 (614)
T KOG0927|consen 147 QAVQA-VVMET---DHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDL 222 (614)
T ss_pred HHHHH-Hhhhh---HHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhcc
Confidence 00000 00000 00000001111111100 11111 1122233333333 45778899
Q ss_pred CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~ 252 (255)
|||++.|+++|++|...|++|+|||||++||.....-+-+.+.
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~ 265 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLA 265 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888877764
No 373
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.2e-21 Score=170.59 Aligned_cols=160 Identities=15% Similarity=0.114 Sum_probs=107.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P------ 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~------ 148 (255)
.+.++|+++.|+.. +++ |+++||+++.|+.++|+|++|+||||++++|..++. +++|. ..+++.. .
T Consensus 262 ~v~F~~V~F~y~~~-r~i--L~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 262 AVAFINVSFAYDPR-RPI--LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred eEEEEEEEeecccc-chh--hcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence 47789999999873 344 599999999999999999999999999999999997 77775 2333211 0
Q ss_pred -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc---------CCcc----CCCCCccc
Q 025293 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGV 213 (255)
Q Consensus 149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---------~~~~----~~~lS~G~ 213 (255)
..+|. +.++-..+. .....+..+ ..+...++.....+...+. .+.. .-.+||||
T Consensus 336 R~aIg~-VPQDtvLFN----------Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSgge 404 (497)
T COG5265 336 RRAIGI-VPQDTVLFN----------DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGE 404 (497)
T ss_pred HHHhCc-Ccccceehh----------hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCch
Confidence 11222 222211100 001111111 1112222333333322221 1222 23689999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||||++||++..+|+||++||.|+.||....+++...+++
T Consensus 405 kqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~ 444 (497)
T COG5265 405 KQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE 444 (497)
T ss_pred HHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999888887765
No 374
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=4.8e-21 Score=169.13 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=112.2
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (255)
.-||++|+.+.|.... +-+..||++|++||++-|+|.||||||||+++|.|+.+ |++|+ .++++...++.-.
T Consensus 321 ~~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~le- 393 (546)
T COG4615 321 KTLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQLE- 393 (546)
T ss_pred cceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCCHH-
Confidence 3699999999998742 34589999999999999999999999999999999997 88886 3443322111000
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCC-------ccCCCCCcccccchhhhhhhccCC
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-------VYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~lS~G~kqrv~la~~l~~~~ 227 (255)
++..++. .+..+...+....+.........+...++++.+..+ ...-.||.|||+|+++..|+..+-
T Consensus 394 ---dYR~LfS---avFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR 467 (546)
T COG4615 394 ---DYRKLFS---AVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEER 467 (546)
T ss_pred ---HHHHHHH---HHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhC
Confidence 0000000 011111112222222111234456677777776532 233478999999999999999999
Q ss_pred cEEEEcCCCCCCChhHHHHHHHHH
Q 025293 228 KVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 228 ~illlDep~~~LD~~~~~~l~~ll 251 (255)
+|+++||+-+-.||..++.+.+.+
T Consensus 468 ~Ilv~DEWAADQDPaFRR~FY~~l 491 (546)
T COG4615 468 DILVLDEWAADQDPAFRREFYQVL 491 (546)
T ss_pred CeEEeehhhccCChHHHHHHHHHH
Confidence 999999999999999998877654
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=2.6e-20 Score=160.28 Aligned_cols=163 Identities=9% Similarity=0.079 Sum_probs=100.6
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC-c-cCCCC--CC------
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQ--VK------ 147 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G-~-~~~~~--~~------ 147 (255)
|.++|. +.|.+. .+ +.+ +. ..+++|+||||||||||+++|++++. +..| + ...+. ..
T Consensus 6 ~~~~~f-~~~~~~--~~--~~~----~~-~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~ 72 (251)
T cd03273 6 IILDGF-KSYATR--TV--ISG----FD-PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQA 72 (251)
T ss_pred EEEeCc-cccCcC--Ee--ecc----CC-CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCC
Confidence 567777 667551 11 112 22 56999999999999999999999996 5543 3 22111 00
Q ss_pred ---CCCeEEEEecCC-CC------CCCccCCcccChHHHHHhcC-C-CCCccHHHHHHHHHhhcccC-------------
Q 025293 148 ---PPDVATVLPMDG-FH------LYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG------------- 202 (255)
Q Consensus 148 ---~~~~g~~i~~~~-~~------~~~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~~------------- 202 (255)
...++. +..+. .. ...+.+++.+++........ + ........+..+++.+++..
T Consensus 73 ~~~~~~v~~-~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~ 151 (251)
T cd03273 73 GITKASVTI-VFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRIT 151 (251)
T ss_pred CCcEEEEEE-EEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHH
Confidence 012222 22221 00 00111233332221111100 1 11123356677788777652
Q ss_pred ---------CccCCCCCcccccchhhhhhhc----cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 203 ---------SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 203 ---------~~~~~~lS~G~kqrv~la~~l~----~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.++..||+||+||+++|++++ .+|+++|+|||+++||+..+..+.+++.+.
T Consensus 152 ~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~ 216 (251)
T cd03273 152 KVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH 216 (251)
T ss_pred HHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 2567899999999999999987 578999999999999999999999998763
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=2.3e-21 Score=162.83 Aligned_cols=157 Identities=13% Similarity=0.110 Sum_probs=91.6
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
-|+++|+. .|++. . +++++++ +++||+||||||||||+++|.-... .+..... ....+.++.
T Consensus 5 ~l~l~nfk-~~~~~--~--~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G---~~~~~~~-----~~~i~~~~~ 66 (212)
T cd03274 5 KLVLENFK-SYAGE--Q--VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFG---FRASKMR-----QKKLSDLIH 66 (212)
T ss_pred EEEEECcc-cCCCC--e--eeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhc---cCHHHhh-----hhhHHHHhc
Confidence 36788886 78763 3 4588887 8999999999999999999985431 0000000 001111111
Q ss_pred cCCCCCCCccCCcccChHH--------HHHhcCCCCCccHH--HHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293 157 MDGFHLYLSQLDAMEDPKE--------AHARRGAPWTFNPL--LLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~--~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
...+.. .++..+.... ..+..++....... ....+.+.+++. .+.++..||+||+||+++|++++
T Consensus 67 ~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~ 143 (212)
T cd03274 67 NSAGHP---NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFA 143 (212)
T ss_pred CCCCCC---CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHH
Confidence 100000 0111110000 00112221110000 001222333333 34567889999999999999996
Q ss_pred c----CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 225 L----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~----~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
. +|+++++|||+++||+..+..+.+++.+.
T Consensus 144 ~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~ 177 (212)
T cd03274 144 LHHYKPTPLYVMDEIDAALDFRNVSIVANYIKER 177 (212)
T ss_pred hcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 3 57999999999999999999999998763
No 377
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.81 E-value=4.9e-20 Score=154.91 Aligned_cols=152 Identities=13% Similarity=0.108 Sum_probs=92.5
Q ss_pred eEEecCchheehhhhcccccccccccccC-CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCC-------CCCC
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-------SQVK 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~-~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~-------~~~~ 147 (255)
.|+++|+. .|.+. .+++|... +|++++|+||||||||||+++|++.+.+ +..+. ... ....
T Consensus 5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~ 74 (213)
T cd03279 5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGED 74 (213)
T ss_pred EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCc
Confidence 47899998 66541 45667654 5899999999999999999999965421 22222 110 0000
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHH--HHHhhcc--cCCccCCCCCcccccchhhhhhh
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN--CLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l~~--~~~~~~~~lS~G~kqrv~la~~l 223 (255)
...++..+ ...... ..+.. ..++ ....+.. .+....+ ..+.++..||+||+||+++|+++
T Consensus 75 ~~~v~~~f-~~~~~~----~~~~r-------~~gl----~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al 138 (213)
T cd03279 75 TAEVSFTF-QLGGKK----YRVER-------SRGL----DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLAL 138 (213)
T ss_pred cEEEEEEE-EECCeE----EEEEE-------ecCC----CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHH
Confidence 11122211 111100 01111 0111 1111111 1111111 23567789999999999999999
Q ss_pred cc----------CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 224 GL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~----------~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+. +|+++|+||||++||+..+..+.+++.+.
T Consensus 139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~ 179 (213)
T cd03279 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI 179 (213)
T ss_pred HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 74 57899999999999999999999888653
No 378
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=9.1e-20 Score=183.52 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=118.8
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-C-------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-K------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-~------- 147 (255)
-|+++|++.+|..+... +|+||||+|++||.|||+|..|||||||++.|..+.. |.+|+ .+++-. .
T Consensus 1138 ~I~f~~~~~RYrp~lp~--VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPL--VLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred eEEEEEeEEEeCCCCcc--hhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence 69999999999875334 5599999999999999999999999999999999998 88887 444421 1
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~k 214 (255)
+...+ +|+++...+.. |+.. +..-..++.+..+.++++...+. .+. -...||-|||
T Consensus 1213 Rsrls-IIPQdPvLFsG---TvR~-------NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1213 RSRLS-IIPQDPVLFSG---TVRF-------NLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred HhcCe-eeCCCCceecC---cccc-------ccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 12223 25554433221 2222 22222344455666666665543 222 2357999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|.+++||||+.+.+||+|||.|+..|++.-..+.+.|.+.
T Consensus 1282 QLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~ 1321 (1381)
T KOG0054|consen 1282 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE 1321 (1381)
T ss_pred HHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888777777653
No 379
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.80 E-value=1.3e-19 Score=162.55 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=103.2
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (255)
..+++-.+++|.|++.. |+--.=+|..||++|++||||-|||||.++|+|.++ |++|.. . .
T Consensus 340 ~~lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~~--~---~------ 400 (591)
T COG1245 340 DTLVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGSE--E---D------ 400 (591)
T ss_pred ceeeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCCC--c---c------
Confidence 34677788888888632 122234577899999999999999999999999999 999941 0 0
Q ss_pred EecCCCCCCC---ccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcE
Q 025293 155 LPMDGFHLYL---SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 155 i~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~i 229 (255)
+.+.+..++- .+.++.+. +...... .........++.+-|.+. .+..+..|||||-|||++|.+|..++++
T Consensus 401 ~~vSyKPQyI~~~~~gtV~~~---l~~~~~~-~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADl 476 (591)
T COG1245 401 LKVSYKPQYISPDYDGTVEDL---LRSAIRS-AFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADL 476 (591)
T ss_pred ceEeecceeecCCCCCcHHHH---HHHhhhh-hcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCE
Confidence 1111111110 01122221 1111110 000111122344444443 4577899999999999999999999999
Q ss_pred EEEcCCCCCCChhHHHHHHHHHHh
Q 025293 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 230 lllDep~~~LD~~~~~~l~~ll~~ 253 (255)
.++|||.+-||.+.+..+...|..
T Consensus 477 YllDEPSA~LDvEqR~~vakvIRR 500 (591)
T COG1245 477 YLLDEPSAYLDVEQRIIVAKVIRR 500 (591)
T ss_pred EEecCchhhccHHHHHHHHHHHHH
Confidence 999999999999988877777654
No 380
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.80 E-value=2.8e-19 Score=154.18 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=54.9
Q ss_pred HHHHHHhhccc---CCccCCCCCcccccchhhhhhhccC---CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~---~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
..++++.+++. ...++..||+||+||+++|++|+.+ |+++|+||||++||+..+..+.++|.+.
T Consensus 149 ~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l 218 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL 218 (261)
T ss_pred HHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 34566667765 3577889999999999999999986 7999999999999999999999998753
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.78 E-value=5.7e-19 Score=147.48 Aligned_cols=133 Identities=11% Similarity=-0.002 Sum_probs=81.2
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHH----HHhcccCCCCCcc------CCCCCCCCCeEEEEecCCCCCCCccCCccc
Q 025293 102 SNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKASS------FDSQVKPPDVATVLPMDGFHLYLSQLDAME 171 (255)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLLk~L~----Gll~~~~p~~G~~------~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~ 171 (255)
+++.+| +++|+||||||||||+++|. |... |++|.. +........++..+....... +.+..
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~----~~v~r 89 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKLAFENANGKK----YTITR 89 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEEEEEeCCCCE----EEEEE
Confidence 445567 99999999999999999996 5543 555531 111111112232222110110 11111
Q ss_pred ChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccc------hhhhhhhccCCcEEEEcCCCCCCChhHHH
Q 025293 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (255)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqr------v~la~~l~~~~~illlDep~~~LD~~~~~ 245 (255)
........ .+.. .......+ +..+..||+||+|| ++++++++.+|+++|+|||+++||+..+.
T Consensus 90 ~~~~~~~~-~~~~---~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~ 158 (204)
T cd03240 90 SLAILENV-IFCH---QGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIE 158 (204)
T ss_pred EhhHhhce-eeec---hHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHH
Confidence 11111111 0000 11111111 55678999999996 68899999999999999999999999999
Q ss_pred -HHHHHHHh
Q 025293 246 -DVSSMFDE 253 (255)
Q Consensus 246 -~l~~ll~~ 253 (255)
.+.+++.+
T Consensus 159 ~~l~~~l~~ 167 (204)
T cd03240 159 ESLAEIIEE 167 (204)
T ss_pred HHHHHHHHH
Confidence 99998865
No 382
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.77 E-value=8.7e-19 Score=161.02 Aligned_cols=171 Identities=12% Similarity=-0.006 Sum_probs=114.4
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
.++|++++|+..-.++ ..+ +++|+||+|++|+-+.|.||||||||+|+|+|+|+-+ -.+|+ ....+- .+ ..
T Consensus 431 Dn~i~~e~v~l~tPt~-g~~-lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~l~k~~~~-~~--~~ 502 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN-GDL-LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGKLTKPTDG-GP--KD 502 (659)
T ss_pred cceEEeeeeeecCCCC-Cce-eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCeEEecccC-CC--Cc
Confidence 3689999999988774 222 4599999999999999999999999999999999873 26665 211110 00 11
Q ss_pred EEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc--------C-----CccCCCCCcccccchhh
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--------G-----SVYAPSFDHGVGDPVED 219 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~--------~-----~~~~~~lS~G~kqrv~l 219 (255)
++.++..+.... -+..+.+.+.... .........+.+...++++.+. . ..+..+||+||+||+++
T Consensus 503 lfflPQrPYmt~-GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ 581 (659)
T KOG0060|consen 503 LFFLPQRPYMTL-GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAF 581 (659)
T ss_pred eEEecCCCCccc-cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHH
Confidence 122222111100 0111111111000 0011223445667777777764 1 23456899999999999
Q ss_pred hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||.+..+|++-||||-|+.+|+.....+...+++.
T Consensus 582 ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 582 ARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred HHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 99999999999999999999999999998888763
No 383
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.77 E-value=5.7e-19 Score=140.73 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=99.1
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
.++.++||...- -|-.+|.++..||++-+||||||||||||-.++|++ |.+|+ |
T Consensus 2 ~l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGs--------------i 55 (248)
T COG4138 2 ILMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGS--------------I 55 (248)
T ss_pred ceeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCce--------------E
Confidence 367788886532 226788999999999999999999999999999998 77775 3
Q ss_pred ecCCCCCCCccCCcc----------cChHHHH---HhcCC--CCCccHHHHHHHHHhhcccC--CccCCCCCcccccchh
Q 025293 156 PMDGFHLYLSQLDAM----------EDPKEAH---ARRGA--PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVE 218 (255)
Q Consensus 156 ~~~~~~~~~~~l~~~----------~~~~~~~---~~~~~--~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~ 218 (255)
.++|........... ..+.+.. .+..+ |.......+..+.+.+.+.. .+.++.|||||=|||.
T Consensus 56 ~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVR 135 (248)
T COG4138 56 QFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVR 135 (248)
T ss_pred EECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeE
Confidence 333332211000000 0000000 01111 11111223344555555553 4567899999999999
Q ss_pred hhhhhc-------cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 219 DDILVG-------LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 219 la~~l~-------~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|.... ...++||+|||.++||...+..+..++.+.
T Consensus 136 LAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~ 178 (248)
T COG4138 136 LAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178 (248)
T ss_pred EeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHH
Confidence 887653 245899999999999998888887777654
No 384
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.77 E-value=2.4e-18 Score=143.07 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=86.1
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC---CCC--CCCeEE-EEecCCCCCCCccCCcc
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS---QVK--PPDVAT-VLPMDGFHLYLSQLDAM 170 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~---~~~--~~~~g~-~i~~~~~~~~~~~l~~~ 170 (255)
+++++++.+| +.+|+||||||||||+..|...+. ..... ..+. ... ....+. .+.+..... .
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~-----~-- 81 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGL-----D-- 81 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCCCeEEEEEEEEcCCc-----c--
Confidence 5667777777 889999999999999999986653 22110 0010 000 000111 011111100 0
Q ss_pred cChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhh----ccCCcEEEEcCCCCCCChhHHHH
Q 025293 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKD 246 (255)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l----~~~~~illlDep~~~LD~~~~~~ 246 (255)
.+ .........+.++++. .-..+.++..||+||+||+++|+++ +.+|+++|+|||+++||+..+..
T Consensus 82 ~~---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~ 151 (198)
T cd03276 82 AN---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKI 151 (198)
T ss_pred CC---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHH
Confidence 00 0001112234455554 3335677889999999999999999 58999999999999999999999
Q ss_pred HHHHHHhh
Q 025293 247 VSSMFDEK 254 (255)
Q Consensus 247 l~~ll~~~ 254 (255)
+.++|.+.
T Consensus 152 ~~~~l~~~ 159 (198)
T cd03276 152 STDLLVKE 159 (198)
T ss_pred HHHHHHHH
Confidence 99988653
No 385
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=1.2e-18 Score=175.45 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=114.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
...++++|.+++.+... +...|+||||+|++|+.+||+|+-|||||+||..|.|.++ ..+|+ .+.+. .++
T Consensus 516 ~~~i~i~~~sfsW~~~~-~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-----iaY 586 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSES-PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-----VAY 586 (1381)
T ss_pred CceEEEeeeeEecCCCC-CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-----EEE
Confidence 45799999999987621 2225699999999999999999999999999999999997 77776 22221 333
Q ss_pred EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCC-------------ccCCCCCcccccchhhh
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-------------VYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-------------~~~~~lS~G~kqrv~la 220 (255)
+.+...-+. -++.+ ++-+...++.++..++++...+..+ .+.-.||||||||+++|
T Consensus 587 -v~Q~pWI~n---gTvre-------NILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA 655 (1381)
T KOG0054|consen 587 -VPQQPWIQN---GTVRE-------NILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA 655 (1381)
T ss_pred -eccccHhhC---CcHHH-------hhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence 333332221 13333 3333455666777777776655421 23447999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ 249 (255)
||+-.+++|+|||-|++.+|...-.++.+
T Consensus 656 RAVY~~adIYLLDDplSAVDahvg~~if~ 684 (1381)
T KOG0054|consen 656 RAVYQDADIYLLDDPLSAVDAHVGKHIFE 684 (1381)
T ss_pred HHHhccCCEEEEcCcchhhhHhhhHHHHH
Confidence 99999999999999999999988777665
No 386
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.76 E-value=2.6e-18 Score=140.26 Aligned_cols=172 Identities=15% Similarity=0.064 Sum_probs=113.1
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc--cCCCCCCC----C
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQVKP----P 149 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~--~~~~~~~~----~ 149 (255)
-.|++.++.+.|... .+++ -|+|++++.|....++|.||||||||||+|+|-.- -..|. +.+.+... .
T Consensus 12 ~aievsgl~f~y~~~-dP~~--~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS-DPIF--FDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred ceEEEeccEEecccC-CceE--EEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCcccccccc
Confidence 479999999999764 3554 89999999999999999999999999999999652 11222 11111111 1
Q ss_pred CeEEEEecCCCCCCC----ccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhcc
Q 025293 150 DVATVLPMDGFHLYL----SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
..|.....++.-... .+.+...+.....-.+++..+ +..+-..+++.+.+...-+.+..|-|||+||.|++.|..
T Consensus 86 ~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~-dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~ 164 (291)
T KOG2355|consen 86 SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGD-DPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLK 164 (291)
T ss_pred ccCceeEecccccccccccccccccccccHHHHHhhccCC-ChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccc
Confidence 122211111110000 000111111111222333111 113334556666666777788999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.-++|+|||.|.-||...+..+.+++++-
T Consensus 165 PfkVLLLDEVTVDLDVlARadLLeFlkeE 193 (291)
T KOG2355|consen 165 PFKVLLLDEVTVDLDVLARADLLEFLKEE 193 (291)
T ss_pred ceeEEEeeeeEeehHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999764
No 387
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.75 E-value=1.4e-18 Score=149.19 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=44.5
Q ss_pred CCCCCcccccchhhhhhhccC----CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 206 APSFDHGVGDPVEDDILVGLQ----HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 206 ~~~lS~G~kqrv~la~~l~~~----~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+..||+||+||+++|++++.+ |+++|+|||+++||+..+..+.++|.+.
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~ 205 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQ 205 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHh
Confidence 478999999999999999764 8999999999999999999999988754
No 388
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=4.8e-18 Score=139.24 Aligned_cols=176 Identities=16% Similarity=0.236 Sum_probs=117.2
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc--cCCCC-CC----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQ-VK---- 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~--~~~~~-~~---- 147 (255)
|+.+.+.||+..+.....++.+++++|+++.+||+-|++|.+|||||-..|.|+|..+..|--... .|+.- ..
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 567889999998876656677889999999999999999999999999999999988533322221 12210 00
Q ss_pred ---CCCeEEEEecCCCCCCCccCCcccChHHH-HHhc-CCC-C----------CccHHHHHHHHHhhcccC-----CccC
Q 025293 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARR-GAP-W----------TFNPLLLLNCLKNLRNQG-----SVYA 206 (255)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~-~~~~-~~~-~----------~~~~~~~~~~l~~l~~~~-----~~~~ 206 (255)
+.-+|..+.+-.. ...+..+..+.. +..+ .++ . .+...+..+++..+++.. ..|+
T Consensus 81 r~RRk~ig~~isMIFQ----eP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP 156 (330)
T COG4170 81 RERRKLVGHNVSMIFQ----EPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP 156 (330)
T ss_pred HHhhhhhccchhhhhc----CchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc
Confidence 0112222211100 001111111111 1111 111 0 112234566777777753 3567
Q ss_pred CCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 207 ~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|.-||.|+|+||.|++.+|++||.||||+.+|+..+.++..++..+
T Consensus 157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~m 204 (330)
T COG4170 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRL 204 (330)
T ss_pred chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999999999888653
No 389
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=3.2e-18 Score=169.58 Aligned_cols=172 Identities=12% Similarity=0.008 Sum_probs=122.2
Q ss_pred eEEecCchhee--hhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-----CC
Q 025293 77 VVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-----KP 148 (255)
Q Consensus 77 ~l~v~~lsk~y--~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-----~~ 148 (255)
+.-..|+.+.- .+.+++ +|+||+=-+++|..+||+|+|||||||||++|+|-.... -.+|. .+++.. ..
T Consensus 787 V~~w~dl~~~~~~qG~~~q--LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQ--LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFA 863 (1391)
T ss_pred eEEEEeCCccccccccceE--hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhc
Confidence 34445554443 122234 459999999999999999999999999999999974210 12233 233321 23
Q ss_pred CCeEEEEecCCCCCCCccCCcccChHHHHHhcCC---CCCccHHHHHHHHHhhccc--CCccCC----CCCcccccchhh
Q 025293 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVED 219 (255)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~----~lS~G~kqrv~l 219 (255)
...|+ +.+++.+.. ++|+.|.+.+....+-. +.......+.++++.+++. .+.-+. -||.+||+|+.|
T Consensus 864 R~~GY-vqQ~DiH~~--~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTI 940 (1391)
T KOG0065|consen 864 RVSGY-VEQQDIHSP--ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTI 940 (1391)
T ss_pred cccce-eecccccCc--ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeE
Confidence 45676 677766654 47898888776655432 1122223457888888877 333344 499999999999
Q ss_pred hhhhccCC-cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 220 DILVGLQH-KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 220 a~~l~~~~-~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|--|+.+| -||+|||||+|||..+...++++++++
T Consensus 941 gVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkl 976 (1391)
T KOG0065|consen 941 GVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKL 976 (1391)
T ss_pred EEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHH
Confidence 99999999 999999999999999998999888764
No 390
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.69 E-value=1.2e-16 Score=158.21 Aligned_cols=64 Identities=13% Similarity=0.014 Sum_probs=55.9
Q ss_pred HHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCC---cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~---~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
..+.++.+++. ....+..||+||+||+.+|++|+.+| +++||||||++||+..+..+.++|++.
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l 879 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRL 879 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 34567777775 35678899999999999999999999 999999999999999999999998753
No 391
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.69 E-value=8.7e-17 Score=148.04 Aligned_cols=166 Identities=21% Similarity=0.229 Sum_probs=115.1
Q ss_pred CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCC--
Q 025293 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPD-- 150 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~-- 150 (255)
+.++++++|++..- .++|+||++.+|||+||.|-=|||+|-|++.|.|..+ +.+|+ .+++......
T Consensus 260 ~~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp 328 (500)
T COG1129 260 GEPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSP 328 (500)
T ss_pred CCcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCH
Confidence 35678899987432 2389999999999999999999999999999999886 78888 5555432111
Q ss_pred -------eEEEEecC----CCCCCCccCCcccChHHH--HHhc--CC-CCCccHHHHHHHHHhhccc---CCccCCCCCc
Q 025293 151 -------VATVLPMD----GFHLYLSQLDAMEDPKEA--HARR--GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (255)
Q Consensus 151 -------~g~~i~~~----~~~~~~~~l~~~~~~~~~--~~~~--~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~ 211 (255)
.++ +.-| |..+ .+++.+|.... .... .+ .............+.+.+. .+..+..|||
T Consensus 329 ~~Ai~~Gi~~-v~EDRk~~Gl~l---~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSG 404 (500)
T COG1129 329 RDAIKAGIAY-VPEDRKSEGLVL---DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSG 404 (500)
T ss_pred HHHHHcCCEe-CCcccccCcCcC---CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCc
Confidence 222 2211 1111 12333443332 1111 01 1111122334555556554 3467889999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|.+|||.+|++|..+|++||+||||-|.|.-.+.++.++|.+.
T Consensus 405 GNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~l 447 (500)
T COG1129 405 GNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL 447 (500)
T ss_pred hhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999764
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=6.1e-17 Score=147.21 Aligned_cols=161 Identities=14% Similarity=0.059 Sum_probs=116.6
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
.+.+++.+|++.|..... ..+.++++.++--..++++|+||+||||++|++.|.+. |..|. ... +.
T Consensus 360 ~p~l~i~~V~f~y~p~~y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~--------~r 426 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRH--------PR 426 (582)
T ss_pred CCeeEEEeeeccCCCcch--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeec--------cc
Confidence 468999999999976432 24599999999999999999999999999999999887 78774 111 11
Q ss_pred EEecCCCCCCCc-cCCccc-ChHHHHHhcCCCCCccHHHHHHHHHhhcccCC---ccCCCCCcccccchhhhhhhccCCc
Q 025293 154 VLPMDGFHLYLS-QLDAME-DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS---VYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 154 ~i~~~~~~~~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
..+.++.++.- .++... .+.+.... .+....+.+..-+..|++..+ ..+..||||||-||++|.....+|.
T Consensus 427 -~ri~~f~Qhhvd~l~~~v~~vd~~~~~---~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Ph 502 (582)
T KOG0062|consen 427 -LRIKYFAQHHVDFLDKNVNAVDFMEKS---FPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPH 502 (582)
T ss_pred -ceecchhHhhhhHHHHHhHHHHHHHHh---CCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCc
Confidence 23333333220 011100 11111111 122245677888888988743 3467899999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHH
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~ 252 (255)
+|+|||||+.||..+-..+...|.
T Consensus 503 lLVLDEPTNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 503 LLVLDEPTNHLDRDSLGALAKALK 526 (582)
T ss_pred EEEecCCCccccHHHHHHHHHHHH
Confidence 999999999999998888877664
No 393
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=1.4e-16 Score=157.52 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=54.9
Q ss_pred HHHHHHhhccc---CCccCCCCCcccccchhhhhhhcc---CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~---~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
..++++.+++. ....+..||+||+||+.+|++|+. +|+++||||||++||+..+..+.++|.+.
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l 877 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRL 877 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 34566677765 356788999999999999999986 58999999999999999999999998764
No 394
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.66 E-value=4.8e-16 Score=160.53 Aligned_cols=62 Identities=11% Similarity=-0.049 Sum_probs=54.4
Q ss_pred HHHHhhccc---CCccCCCCCcccccchhhhhhhc---cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 193 ~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~---~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++++.+++. .+..+..||+||+||+++|++|+ .+|+++||||||++||+..+..+.++|++.
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L 858 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSL 858 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 566777775 35678899999999999999997 699999999999999999999999999764
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.62 E-value=5.6e-16 Score=129.00 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=73.6
Q ss_pred cccccccCCCc-EEEEECCCCCcHHHHHHHHH-HHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293 98 SALASNVNVKH-IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 98 ~~isl~i~~Ge-ivgLiGpNGsGKSTLLk~L~-Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 175 (255)
.++||++.+|+ +++|+||||||||||||+|+ +.+. +..|-. .+. ...+.+.++.
T Consensus 18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~~~G~~------vp~-~~~~~~~~~~-------------- 73 (200)
T cd03280 18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---AQSGLP------IPA-AEGSSLPVFE-------------- 73 (200)
T ss_pred EcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---HHcCCC------ccc-cccccCcCcc--------------
Confidence 57899999995 79999999999999999998 3321 222210 000 0000010000
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhcc--cCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH-HHH
Q 025293 176 AHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS-MFD 252 (255)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~-ll~ 252 (255)
+.+. .++. ........||+||+|++.++.++ .+|+++|+|||+.++|+..+..+.. ++.
T Consensus 74 --------~~~~---------~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~ 135 (200)
T cd03280 74 --------NIFA---------DIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILE 135 (200)
T ss_pred --------EEEE---------ecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 0000 0000 12234578999999999988775 6999999999999999998887753 443
No 396
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.61 E-value=5.4e-16 Score=141.43 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=102.4
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEe
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP 156 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~ 156 (255)
|.++|+-..-... .+ ++..++|.|++|-.+.|+||||||||+|+|+|.|+-+ -..|. ... ++..-.+++
T Consensus 482 I~lenIpvItP~~--~v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~L~~P----~~~~mFYIP 551 (728)
T KOG0064|consen 482 IILENIPVITPAG--DV-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGLLSIP----RPNNIFYIP 551 (728)
T ss_pred eEEecCceeccCc--ce-eecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCeeecC----CCcceEecc
Confidence 6778887777653 23 4599999999999999999999999999999999873 23343 211 112111122
Q ss_pred cCCCCCCCccCC---cccChHHHHHhcCCCCCccHHHHHHHHHhhccc-----------CCccCCCCCcccccchhhhhh
Q 025293 157 MDGFHLYLSQLD---AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 157 ~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----------~~~~~~~lS~G~kqrv~la~~ 222 (255)
+-.|.- ...+. ...+...-....|+. ...+..+++.+.+. ..-+-..||||+|||+++||.
T Consensus 552 QRPYms-~gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm 626 (728)
T KOG0064|consen 552 QRPYMS-GGTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARM 626 (728)
T ss_pred CCCccC-cCcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHH
Confidence 211110 00000 001111112223332 33445555555443 122345789999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~ 252 (255)
+-+.|+..+|||-|+..-+.....+.+..+
T Consensus 627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak 656 (728)
T KOG0064|consen 627 FYHRPKYALLDECTSAVSIDVEGKIFQAAK 656 (728)
T ss_pred HhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence 999999999999999988877777777654
No 397
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.61 E-value=1.6e-15 Score=135.19 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=98.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc-----CCCCCc-cCCCCCCCCCeEEEEecCCCCCCCccCCc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-----WPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDA 169 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~-----~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~ 169 (255)
+++|+||+|++|++++|+|+|||||||||++|+|..... .|++|. .+..+ +.. ..+.+..-+ .++
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~n----t~~--a~iPge~Ep--~f~- 468 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN----TVS--ALIPGEYEP--EFG- 468 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecccc----chh--hccCccccc--ccC-
Confidence 569999999999999999999999999999999987421 134443 11100 001 111221100 011
Q ss_pred ccChHHHHHhcCCCCCccHHHHHHHHHhhccc----CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHH
Q 025293 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (255)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~ 245 (255)
........... .-+......++...++. -......||-|||.|+.||.+++..|.+++.||-.+.||+.+..
T Consensus 469 --~~tilehl~s~--tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~ 544 (593)
T COG2401 469 --EVTILEHLRSK--TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAV 544 (593)
T ss_pred --chhHHHHHhhc--cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHH
Confidence 11122222221 12333456777777765 23556789999999999999999999999999999999999888
Q ss_pred HHHHHHHhh
Q 025293 246 DVSSMFDEK 254 (255)
Q Consensus 246 ~l~~ll~~~ 254 (255)
.+..-|.+.
T Consensus 545 rVArkisel 553 (593)
T COG2401 545 RVARKISEL 553 (593)
T ss_pred HHHHHHHHH
Confidence 877666543
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.60 E-value=7e-16 Score=138.75 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=98.7
Q ss_pred Cchheehhhhccccccccccc-ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE-----
Q 025293 82 CMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL----- 155 (255)
Q Consensus 82 ~lsk~y~~~~~~il~l~~isl-~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i----- 155 (255)
++..+|+.+..++. .+ ...+|.++||+|+||-||||-+|+|+|.+. |.=|..-+ +|.+-.++
T Consensus 79 e~vHRYg~NgFkL~-----~LP~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~----pp~wdeVi~~FrG 146 (591)
T COG1245 79 EVVHRYGVNGFKLY-----RLPTPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYED----PPSWDEVIKRFRG 146 (591)
T ss_pred cceeeccCCceEEe-----cCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCC----CCCHHHHHHHhhh
Confidence 35677876432221 22 246799999999999999999999999997 87774221 12211111
Q ss_pred --ecCCCC-CCCccCCcccCh---HHHHHh-cC----C-CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293 156 --PMDGFH-LYLSQLDAMEDP---KEAHAR-RG----A-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 156 --~~~~~~-~~~~~l~~~~~~---~~~~~~-~~----~-~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~ 221 (255)
.+++|. +...++.+...+ ..+.+. .| + ..........++.+.+++. .++.+..|||||-||++||.
T Consensus 147 tELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa 226 (591)
T COG1245 147 TELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA 226 (591)
T ss_pred hHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence 011110 000001111111 111110 00 0 0000001234555555554 57789999999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++..+++++++|||++-||...+..+..++.+.
T Consensus 227 ~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel 259 (591)
T COG1245 227 ALLRDADVYFFDEPSSYLDIRQRLNAARVIREL 259 (591)
T ss_pred HHhccCCEEEEcCCcccccHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888764
No 399
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.57 E-value=3.7e-15 Score=121.87 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=43.8
Q ss_pred CCCCCcccccchhhhhhhc----cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 206 APSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 206 ~~~lS~G~kqrv~la~~l~----~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+.||+||+||+++|++++ .+|+++|+|||+++||+..+..+.+++.+.
T Consensus 92 ~~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~ 144 (178)
T cd03239 92 EQILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEM 144 (178)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 3449999999999999985 689999999999999999999999988753
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.57 E-value=1.5e-14 Score=121.56 Aligned_cols=51 Identities=16% Similarity=-0.029 Sum_probs=43.7
Q ss_pred CccCCCCCcccccchhhhhhh----ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 203 SVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 203 ~~~~~~lS~G~kqrv~la~~l----~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
...+..||+||+|++.++.++ +.+|+++|+|||+++||+..+..+.+++.+
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~ 175 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVE 175 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 456679999999998766543 579999999999999999999999998864
No 401
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.54 E-value=1.4e-14 Score=116.66 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=71.9
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHh
Q 025293 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (255)
Q Consensus 100 isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~ 179 (255)
.++.+.++.++.|+|||||||||+++.+...+- ...|.. ..+..+. .+.... . ....+
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~~~--------~~~~~~~-~g~~~~-----~-~~~~~---- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQSAT--------RRRSGVK-AGCIVA-----A-VSAEL---- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcchhh--------hccCccc-CCCcce-----e-eEEEE----
Confidence 344455667999999999999999999877763 222210 0000000 010000 0 00000
Q ss_pred cCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhcc----CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~----~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
-.....+|+||++|+.+++++.. +|+++|+|||+.++|+..+..+.+.+.+
T Consensus 72 -----------------------i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~ 126 (162)
T cd03227 72 -----------------------IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILE 126 (162)
T ss_pred -----------------------ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 00012399999999999999976 7899999999999999999998887764
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.54 E-value=6e-15 Score=122.74 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=29.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++|+++.. |++++|+||||||||||+|+|+|..
T Consensus 16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 348877665 7999999999999999999999976
No 403
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.4e-14 Score=129.93 Aligned_cols=154 Identities=18% Similarity=0.100 Sum_probs=95.9
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
-|.++|.+.+..+ +. .+.|.|+.|-.|..+||+||||-||||||+.|+.--- .+| +.+-..++
T Consensus 264 DIKiEnF~ISA~G--k~--LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ral-aIP------------pnIDvLlC 326 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KL--LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARAL-AIP------------PNIDVLLC 326 (807)
T ss_pred cceeeeeeeeccc--ce--eeeccceEEEecceecccCCCCCchHHHHHHHHhhhc-cCC------------CCCceEee
Confidence 3788888888766 33 4499999999999999999999999999999987431 012 11111111
Q ss_pred cCCCCCCC------------------------------ccCCcccChH-HHHHhcCCCCCccHHHHHHHHHhhccc---C
Q 025293 157 MDGFHLYL------------------------------SQLDAMEDPK-EAHARRGAPWTFNPLLLLNCLKNLRNQ---G 202 (255)
Q Consensus 157 ~~~~~~~~------------------------------~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~---~ 202 (255)
-....... ...++.+.+. .....+.+.......+.+.++.-++|. .
T Consensus 327 EQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ 406 (807)
T KOG0066|consen 327 EQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQ 406 (807)
T ss_pred eeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHh
Confidence 10000000 0000000000 000111111112223445566666665 3
Q ss_pred CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHH
Q 025293 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 247 (255)
Q Consensus 203 ~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l 247 (255)
+++...||||-|.||.+||||...|.+|.|||||..||--..-.+
T Consensus 407 ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL 451 (807)
T KOG0066|consen 407 ERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL 451 (807)
T ss_pred cCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeeh
Confidence 567778999999999999999999999999999999997544333
No 404
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.52 E-value=2.1e-14 Score=119.63 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=64.6
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHh
Q 025293 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (255)
Q Consensus 100 isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~ 179 (255)
.++++..|++++|+|||||||||||++|++..- .+..|.+.. +....+..+... ++ .
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~--~~~~g~~~~--------~~~~~i~~~dqi---~~----------~ 78 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVL--LAQIGCFVP--------AESASIPLVDRI---FT----------R 78 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHH--HHHcCCCcc--------ccccccCCcCEE---EE----------E
Confidence 356666899999999999999999999996541 022221000 000000000000 00 0
Q ss_pred cCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ 249 (255)
++.. .........|+.+++| +..+..++.+|+++|+|||+.++|+.....+..
T Consensus 79 ~~~~----------------d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 79 IGAE----------------DSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred ecCc----------------ccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 0000 0011223456666665 655667778999999999999999988776643
No 405
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.49 E-value=1.2e-13 Score=125.66 Aligned_cols=173 Identities=16% Similarity=0.129 Sum_probs=116.2
Q ss_pred CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----C
Q 025293 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----P 148 (255)
Q Consensus 74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----~ 148 (255)
+.+++++++|+..-... +..+++|||+|..|||+||.|-.|-|-+.|+..|+|+.+ |.+|+ .+++... .
T Consensus 254 g~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLS 327 (501)
T ss_pred CCeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCC
Confidence 35799999999776542 336799999999999999999999999999999999997 77787 4444321 0
Q ss_pred C------CeEEEEecCCCC-CCCccCCcccChHHHHHhc------CC-CCCccHHHHHHHHHhhccc---CCccCCCCCc
Q 025293 149 P------DVATVLPMDGFH-LYLSQLDAMEDPKEAHARR------GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (255)
Q Consensus 149 ~------~~g~~i~~~~~~-~~~~~l~~~~~~~~~~~~~------~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~ 211 (255)
+ ..++ +.-+-.. ---.+++..+|........ ++ ..........++++.+... ...+...|||
T Consensus 328 ~~~~r~~G~~~-VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSG 406 (501)
T COG3845 328 PRERRRLGLAY-VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSG 406 (501)
T ss_pred HHHHHhcCCcc-CChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCC
Confidence 0 1121 1111000 0001123333332221111 10 0001112235566666654 3456779999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|.+||+-+||-|..+|++||+..||-|||....+.+.+.|.+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e 448 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE 448 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888887654
No 406
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.46 E-value=3.2e-14 Score=118.74 Aligned_cols=110 Identities=12% Similarity=0.045 Sum_probs=72.5
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 175 (255)
+.+|++|++..|++++|+||||+||||++++|+++.- -...|..+ .... ..++..+
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~v--pa~~---~~l~~~d---- 73 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFV--PAEY---ATLPIFN---- 73 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCc--chhh---cCccChh----
Confidence 4599999999999999999999999999999998762 11112111 0000 0011110
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHH
Q 025293 176 AHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 247 (255)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l 247 (255)
.++..++.. .....+.||.|+++. ..+..++.+++++|+|||+.++|+.....+
T Consensus 74 -----------------~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l 129 (204)
T cd03282 74 -----------------RLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAI 129 (204)
T ss_pred -----------------heeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHH
Confidence 111122222 234556889999965 455667789999999999999999754443
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.46 E-value=3.3e-14 Score=120.20 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=74.6
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 175 (255)
+.+|+++++.++++++|.||||+|||||+++++-..- ...-|.+.+. ..
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~----------------------la~~g~~vpa-----~~---- 67 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL----------------------MAQIGCFVPC-----DS---- 67 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH----------------------HHHhCCCcCc-----cc----
Confidence 4499999999999999999999999999999874321 1111211110 00
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhh--ccCCcEEEEcCC---CCCCChhHHHHH
Q 025293 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVWKDV 247 (255)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l--~~~~~illlDep---~~~LD~~~~~~l 247 (255)
...+ ....++..+++... ....+|.|+++++.+++++ +.+|+++|+||| |+++|+......
T Consensus 68 --~~~~--------~~~~il~~~~l~d~-~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~ 133 (222)
T cd03285 68 --ADIP--------IVDCILARVGASDS-QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA 133 (222)
T ss_pred --EEEe--------ccceeEeeeccccc-hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH
Confidence 0000 01122233333322 2567899999999999998 889999999999 888998776543
No 408
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=1.4e-13 Score=120.20 Aligned_cols=47 Identities=17% Similarity=0.018 Sum_probs=42.2
Q ss_pred CCCcccccchhhhhhhcc----CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 208 ~lS~G~kqrv~la~~l~~----~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.||+||+||+++|++++. .|+++|+|||+++||+..+..+.+++.+.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~ 220 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKEL 220 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 489999999999986543 99999999999999999999999988753
No 409
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.44 E-value=2.4e-13 Score=114.80 Aligned_cols=130 Identities=26% Similarity=0.375 Sum_probs=90.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 188 (255)
++||.|+||||||||++.|.+++. +..+ ...+. ++.+++|+.....+ .... .....+++..++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~---~~~~--------~~~v~-vi~~D~f~~~~~~~---~~~~-~~~~~g~p~~~d~ 64 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS---RWPD--------HPNVE-LITTDGFLYPNKEL---IERG-LMDRKGFPESYDM 64 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh---hcCC--------CCcEE-EEecCcccCcHHHH---HHhh-hhhcCCCcccCCH
Confidence 589999999999999999999984 2111 12233 47888886432111 1000 1123456677777
Q ss_pred HHHHHHHHhhcc-cCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh-hHHHHHHHHHHhh
Q 025293 189 LLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEK 254 (255)
Q Consensus 189 ~~~~~~l~~l~~-~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~-~~~~~l~~ll~~~ 254 (255)
..+..+++.+.. .....++.||.....+..-.......++|+|+|+.++..|+ ..|..+.++++.+
T Consensus 65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ 132 (220)
T cd02025 65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFS 132 (220)
T ss_pred HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeE
Confidence 778888888887 35678899999988888765544567899999999998874 4466677766543
No 410
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.43 E-value=7.9e-13 Score=131.87 Aligned_cols=160 Identities=15% Similarity=0.118 Sum_probs=113.5
Q ss_pred cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC---CCCCeEEEEecCCCCCCCccCCc
Q 025293 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV---KPPDVATVLPMDGFHLYLSQLDA 169 (255)
Q Consensus 94 il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~---~~~~~g~~i~~~~~~~~~~~l~~ 169 (255)
+.+++|++.-+++|+.+.++||.||||||||+.++|.+....-..|+ ..++.. ..+ .+.++.....+.+.+.+|+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~-~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP-KKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc-CceEEeccccccccceeEE
Confidence 44679999999999999999999999999999999987532222344 233321 111 2222333334444455899
Q ss_pred ccChHHHHHhcCC---CCCccHHH-----HHHHHHhhccc-------CCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293 170 MEDPKEAHARRGA---PWTFNPLL-----LLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 170 ~~~~~~~~~~~~~---~~~~~~~~-----~~~~l~~l~~~-------~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe 234 (255)
.+.+.+..+..+. .+.....+ ...+++.+++. .+..+.-.|||||+||.++-+++.+++++..||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 9988887776554 11111111 23566677765 234456789999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHhh
Q 025293 235 NYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 235 p~~~LD~~~~~~l~~ll~~~ 254 (255)
++.|||-.+.-++...++..
T Consensus 287 ~t~GLDSsTal~iik~lr~~ 306 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQL 306 (1391)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 99999999988888877653
No 411
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.40 E-value=4.9e-13 Score=119.76 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=88.1
Q ss_pred cccccccCCC-----cEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCC---ccCCc
Q 025293 98 SALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL---SQLDA 169 (255)
Q Consensus 98 ~~isl~i~~G-----eivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~---~~l~~ 169 (255)
.++.+.|+.| |++..+|.||.|||||+++++|.++ |+.|.-+. .+.+.+..+.. .+-++
T Consensus 353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~p----------~lnVSykpqkispK~~~tv 419 (592)
T KOG0063|consen 353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEIP----------VLNVSYKPQKISPKREGTV 419 (592)
T ss_pred eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCccc----------ccceeccccccCccccchH
Confidence 6777777776 6789999999999999999999987 88774100 01111111110 00111
Q ss_pred ccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHH
Q 025293 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 247 (255)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l 247 (255)
... .....+.. ..+...+.++++-+... .+..+..||||+.||+++|..|-..+++.+.|||.+.||-+.+...
T Consensus 420 R~l--l~~kIr~a--y~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~A 495 (592)
T KOG0063|consen 420 RQL--LHTKIRDA--YMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIA 495 (592)
T ss_pred HHH--HHHHhHhh--hcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHH
Confidence 110 01111111 01112233455444433 3456789999999999999999999999999999999998877655
Q ss_pred HHHHH
Q 025293 248 SSMFD 252 (255)
Q Consensus 248 ~~ll~ 252 (255)
...+.
T Consensus 496 skvik 500 (592)
T KOG0063|consen 496 SKVIK 500 (592)
T ss_pred HHHHH
Confidence 55443
No 412
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.36 E-value=1.2e-12 Score=114.44 Aligned_cols=134 Identities=25% Similarity=0.383 Sum_probs=92.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 184 (255)
+.-.++||.|+||||||||+++|.+++. .+|++| . ..++.+++|+.....+. ... .....+++.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~-~~~~~g----------~-V~vi~~D~f~~~~~~l~---~~g-~~~~~g~P~ 123 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS-RWPEHR----------K-VELITTDGFLHPNQVLK---ERN-LMKKKGFPE 123 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh-hcCCCC----------c-eEEEecccccccHHHHH---HcC-CccccCCCh
Confidence 4558999999999999999999999984 123333 1 23467888865321111 000 113456677
Q ss_pred CccHHHHHHHHHhhcccCC-ccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh------hHHHHHHHHHHhh
Q 025293 185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEK 254 (255)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~-~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~------~~~~~l~~ll~~~ 254 (255)
.++...+.+.+..+.-+.. ...|.||.....++.-....+..++|+|+|+.+...++ +.+..+.+++|.+
T Consensus 124 s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~ 200 (290)
T TIGR00554 124 SYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFS 200 (290)
T ss_pred hccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEE
Confidence 7777778888888876653 77889998888877654455578999999999887543 3466677777654
No 413
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.35 E-value=1.9e-12 Score=107.49 Aligned_cols=145 Identities=48% Similarity=0.842 Sum_probs=120.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 184 (255)
+.-+.+|++|+.|+||||++..+..-- |..-..++.... .+..++.++||++....++..+++......+|.+.
T Consensus 117 n~~~l~glag~pGtgkst~~a~v~~aW----p~~~~~f~~e~i--~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapw 190 (323)
T KOG2702|consen 117 NNEELTGLAGRPGTGKSTRIAAVDNAW----PVNVNKFAQESI--NIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPW 190 (323)
T ss_pred cchheeeeecCCCCcchhHHHHHHhhc----chhhhhhhhhhc--ceeEEecccchhhhHHHHHhhcChHHHHhhcCCCc
Confidence 456899999999999999998887643 554333333222 25566899999999888999999999999999999
Q ss_pred CccHHHHHHHHHhhc--ccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhhC
Q 025293 185 TFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255 (255)
Q Consensus 185 ~~~~~~~~~~l~~l~--~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~~ 255 (255)
.++...+.++++.+. -..+.+++.|.++-+..+.--..+....+|+|++++++.||.++|..+.++++++|
T Consensus 191 TFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~ 263 (323)
T KOG2702|consen 191 TFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKY 263 (323)
T ss_pred ccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhhe
Confidence 999888888888777 45678999999999999987777777899999999999999999999999998875
No 414
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=7.1e-12 Score=105.36 Aligned_cols=41 Identities=10% Similarity=-0.063 Sum_probs=31.8
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHH-HHHHH
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV-SSMFD 252 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l-~~ll~ 252 (255)
-+-+|+++++.++.++.++|+|||+.++|+.....+ ..+++
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~ 135 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIE 135 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 455788888888999999999999999998653333 34443
No 415
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.28 E-value=1.3e-11 Score=102.35 Aligned_cols=111 Identities=27% Similarity=0.420 Sum_probs=70.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 188 (255)
++||+|+||||||||+++|.+++. ..... ++..++++... ...+........++.+..++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~---------------~~~~~-v~~~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 61 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG---------------NPKVV-IISQDSYYKDL---SHEELEERKNNNYDHPDAFDF 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---------------CCCeE-EEEeccccccc---ccccHHHhccCCCCCCCcccH
Confidence 589999999999999999999873 22233 46777765332 111111111112233444555
Q ss_pred HHHHHHHHhhcccCCccCC--CCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293 189 LLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~--~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~ 241 (255)
..+.+.+..+........+ .++.|++++..+ .+..++++|+|+|+++.++
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 5666777777665443333 456666655443 4567899999999999986
No 416
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=4.6e-12 Score=110.26 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=42.9
Q ss_pred CCCCCcccccchhhhhhhc---------cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 206 APSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 206 ~~~lS~G~kqrv~la~~l~---------~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
...+|+||++++.+|++|+ .+|+++|+|||+++||+..+..+.+.+.+
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~ 237 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEG 237 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhc
Confidence 3457999999999999875 69999999999999999999999998853
No 417
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.24 E-value=3.6e-11 Score=125.03 Aligned_cols=64 Identities=11% Similarity=-0.049 Sum_probs=54.4
Q ss_pred HHHHHHhhccc---CCccCCCCCcccccchhhhhhhccC---CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~---~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
..+.+..++++ .-.+...|||||.||+-+|..|... +.++||||||.||++.-.+.+.++|++.
T Consensus 1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L 1748 (1809)
T PRK00635 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTL 1748 (1809)
T ss_pred HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 35566667765 4567789999999999999999754 6899999999999999999999998765
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.24 E-value=1.1e-11 Score=102.00 Aligned_cols=48 Identities=6% Similarity=-0.088 Sum_probs=33.9
Q ss_pred ccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHH-HHHH
Q 025293 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD 252 (255)
Q Consensus 204 ~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~-~ll~ 252 (255)
...+.||+|+++...+.. .+.+|+++|+|||+.++|+.....+. .+++
T Consensus 57 ~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~ 105 (185)
T smart00534 57 QGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLE 105 (185)
T ss_pred ccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 345678888876443332 34599999999999999998766653 4443
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.22 E-value=8.8e-12 Score=122.24 Aligned_cols=113 Identities=11% Similarity=0.066 Sum_probs=73.2
Q ss_pred cccccCCC-cEEEEECCCCCcHHHHHHHHHHH-hcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHH
Q 025293 100 LASNVNVK-HIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (255)
Q Consensus 100 isl~i~~G-eivgLiGpNGsGKSTLLk~L~Gl-l~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~ 177 (255)
+++.+..+ ++++|+||||+|||||||+|+|. +. +..|- .+....... +.. +.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~-------------~Vpa~~~~~----~~~------~d 367 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGI-------------PIPANEHSE----IPY------FE 367 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH---HHhCC-------------CccCCcccc----ccc------hh
Confidence 67888877 89999999999999999999998 32 33331 111110000 000 00
Q ss_pred HhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHH-HHHH
Q 025293 178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD 252 (255)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~-~ll~ 252 (255)
..+. .... -.++. .....||+++++++.++..+ ..+.++|+|||+.|+|+.....+. .++.
T Consensus 368 ~i~~---~i~~--~~si~--------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe 429 (771)
T TIGR01069 368 EIFA---DIGD--EQSIE--------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILE 429 (771)
T ss_pred heee---ecCh--HhHHh--------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 0100 0000 01222 23567999999998887766 689999999999999999988884 4554
No 420
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.22 E-value=3e-11 Score=102.59 Aligned_cols=130 Identities=45% Similarity=0.751 Sum_probs=83.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE-EecCCCCCCCccCCcccChHHHHHhcCCC
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV-LPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~-i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 183 (255)
.+..++||+|+||||||||++.|+++++ ++.| ... + +.+++++....... . . ......+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g--------~~~---v~i~~D~~~~~~~~~~--~-~-g~~~~~~~~ 92 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGE--------LPA---IQVPMDGFHLDNAVLD--A-H-GLRPRKGAP 92 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh---hccC--------Cce---EEEecccccCCHHHHH--h-c-ccccccCCC
Confidence 4578999999999999999999999996 5554 111 2 56666653321000 0 0 001112344
Q ss_pred CCccHHHHHHHHHhhcccC-CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293 184 WTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~-~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~ 252 (255)
..++...+..++..+..+. ....+.|+......+.-...+....+++|.|+.++.++...+..+.+.++
T Consensus 93 ~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D 162 (229)
T PRK09270 93 ETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFD 162 (229)
T ss_pred CCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCC
Confidence 5566666777777776654 56667787777666543333333678999999999888766666665554
No 421
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.19 E-value=3.5e-11 Score=100.61 Aligned_cols=117 Identities=24% Similarity=0.377 Sum_probs=69.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 184 (255)
++|+++||+|+||||||||++.|++++. ....+ ++.++++..........+ .....++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~---------------~~~~~-~i~~D~~~~~~~~~~~~~---~~~~~~~~~~ 64 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG---------------KLEIV-IISQDNYYKDQSHLEMAE---RKKTNFDHPD 64 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc---------------ccCCe-EecccccccChhhCCHHH---hcCCCCCCcc
Confidence 6799999999999999999999999984 22233 367777643321111000 0000111122
Q ss_pred CccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~ 241 (255)
.++...+.+.++.+.-+.....+.|+.....+.. ........+++|+|+.++.+++
T Consensus 65 ~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~ 120 (207)
T TIGR00235 65 AFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDE 120 (207)
T ss_pred HhHHHHHHHHHHHHHCCCCEecccceeecCCCCC-ceEEeCCCCEEEEEehhhhchH
Confidence 3334445566666665555666666654444422 1122346789999998887664
No 422
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.19 E-value=1.5e-10 Score=110.89 Aligned_cols=52 Identities=13% Similarity=0.032 Sum_probs=46.2
Q ss_pred CccCCCCCcccccchhhhhhhccCC---cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 203 SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 203 ~~~~~~lS~G~kqrv~la~~l~~~~---~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
-.+...|||||-||+-+|.-|.... .++||||||.||-..-.++++++|+..
T Consensus 817 GQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rL 871 (935)
T COG0178 817 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRL 871 (935)
T ss_pred CCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 3556789999999999999997766 899999999999999999999988765
No 423
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.17 E-value=6e-11 Score=99.97 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=31.6
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.+|+++++.+ ++++|+||||+|||||||++++..
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 44999999987 999999999999999999998765
No 424
>PLN02796 D-glycerate 3-kinase
Probab=99.17 E-value=5.5e-11 Score=105.64 Aligned_cols=134 Identities=24% Similarity=0.329 Sum_probs=83.5
Q ss_pred ccccccccc---CCCcE-----EEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccC
Q 025293 96 PTSALASNV---NVKHI-----VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167 (255)
Q Consensus 96 ~l~~isl~i---~~Gei-----vgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l 167 (255)
+++++++.+ ++|+. +||+|++|||||||++.|.+++. +. | ...|. +.+++++....+.
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~-g---------~~~g~-IsiDdfYLt~~e~ 146 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---AT-G---------RRAAS-LSIDDFYLTAADQ 146 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---cc-C---------CceeE-EEECCcccchhhH
Confidence 447888887 55665 99999999999999999999994 21 1 12454 7889987643211
Q ss_pred Ccc--cCh-HHHHHhcCCCCCccHHHHHHHHHhhc----ccCCccCCCCCc----ccccchhhh--hhhccCCcEEEEcC
Q 025293 168 DAM--EDP-KEAHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDH----GVGDPVEDD--ILVGLQHKVVIVDG 234 (255)
Q Consensus 168 ~~~--~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~~~~~lS~----G~kqrv~la--~~l~~~~~illlDe 234 (255)
... +++ ......+|.+..++.....+.++.+. -+....+|.|+. |+..|..-. ..+...++|+|+++
T Consensus 147 ~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EG 226 (347)
T PLN02796 147 AKLAEANPGNALLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEG 226 (347)
T ss_pred HHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcC
Confidence 100 010 11122345555566655666666665 234456777754 444565422 12334679999999
Q ss_pred CCCCCChhH
Q 025293 235 NYLFLDGGV 243 (255)
Q Consensus 235 p~~~LD~~~ 243 (255)
.+.|.-+..
T Consensus 227 w~vG~~p~~ 235 (347)
T PLN02796 227 WMLGFKPLG 235 (347)
T ss_pred cccCCCCCC
Confidence 999986544
No 425
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.17 E-value=5.4e-11 Score=100.14 Aligned_cols=62 Identities=18% Similarity=0.082 Sum_probs=44.7
Q ss_pred HHHHHHHHhhcccCCccCCCCCcccccchhhhhhh----ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l----~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
..+...+..+.+.. ..+||||+..+++|..| ..+.+++||||+.+.||+..+..+.++|.+.
T Consensus 121 ~~~~~~l~~~~i~~----~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~ 186 (220)
T PF02463_consen 121 KDLEELLPEVGISP----EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKEL 186 (220)
T ss_dssp HHHHHHHHCTTTTT----TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHH
T ss_pred cccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34445555444433 38999999999988665 4578999999999999999999999998753
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.14 E-value=8.2e-11 Score=99.38 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=36.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHH-HhcccCCCCCc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKAS 140 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~G-ll~~~~p~~G~ 140 (255)
+.+|+++.+.+|++++|+||||+||||+++++++ .+. +..|.
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l---a~~G~ 62 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM---AQIGS 62 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH---HhCCC
Confidence 4499999999999999999999999999999999 443 66663
No 427
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.12 E-value=1e-10 Score=99.98 Aligned_cols=134 Identities=34% Similarity=0.579 Sum_probs=107.1
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 183 (255)
-+..-+|||.|+-|+||||+.+.+.-++. .||. .+ ....+.+|||..++..+. ..-.+.+.|.|
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~-~~~~----------~~-~v~lvpmDGFhy~n~~L~----~~glm~rKGfP 142 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLS-RWPE----------SP-KVDLVTMDGFHYPNAVLD----ERGLMARKGFP 142 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHh-hCCC----------CC-ceEEEeccccccCHhHhh----hccccccCCCC
Confidence 34467899999999999999999999985 1221 23 345689999987754333 22345678899
Q ss_pred CCccHHHHHHHHHhhccc-CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 184 WTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~-~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
..++...+.+.+..+.-+ .+..+|.||+-....+.-+..+..+|+|||++++...+|...|-.+.+++|.
T Consensus 143 eSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDf 213 (283)
T COG1072 143 ESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDF 213 (283)
T ss_pred ccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceE
Confidence 999999998988888855 3478999999999999999999999999999999999999887777777664
No 428
>PRK05439 pantothenate kinase; Provisional
Probab=99.10 E-value=1.3e-10 Score=102.52 Aligned_cols=133 Identities=28% Similarity=0.370 Sum_probs=92.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 185 (255)
..-+|||.|+.|||||||.+.|..++. ...+ .+.+. ++.+|+|+.....+.. .......|.|..
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~---~~~~--------~~~v~-vi~~DdFy~~~~~l~~----~~l~~~kg~Pes 148 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLS---RWPE--------HPKVE-LVTTDGFLYPNAVLEE----RGLMKRKGFPES 148 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hhCC--------CCceE-EEeccccccCHHHHhh----hhccccCCCccc
Confidence 346899999999999999999999874 1100 12344 5899999765432210 112224567778
Q ss_pred ccHHHHHHHHHhhcccCC-ccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChh--HHHHHHHHHHhh
Q 025293 186 FNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEK 254 (255)
Q Consensus 186 ~~~~~~~~~l~~l~~~~~-~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~--~~~~l~~ll~~~ 254 (255)
++...+.+.+..+.-+.. ...+.||.-...++.-....+..++|+|+|+.+...++. .+..+.++++.+
T Consensus 149 ~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~ 220 (311)
T PRK05439 149 YDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFS 220 (311)
T ss_pred ccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEE
Confidence 888888888888887664 778888888777764343445689999999988775544 466677776643
No 429
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.08 E-value=6.9e-10 Score=92.79 Aligned_cols=117 Identities=24% Similarity=0.389 Sum_probs=69.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 184 (255)
.++.+++|.|+||||||||.+.|++.+. ...+.. +.+++++.....++.. ......++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------~~~~~~-i~~D~~~~~~~~~~~~---~~~~~~~~~~~ 64 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------DESIAV-IPQDSYYKDQSHLSFE---ERVKTNYDHPD 64 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------CCceEE-EeCCccccCcccCCHH---HhcccCccCcc
Confidence 4788999999999999999999999883 233333 6777775432211110 01111222344
Q ss_pred CccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~ 241 (255)
.++...+.+.+..+.-......+.|+.....+.... ......+++|+|++++..++
T Consensus 65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~~-~~~~~~~~vivEg~~l~~~~ 120 (209)
T PRK05480 65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKET-IRVEPKDVIILEGILLLEDE 120 (209)
T ss_pred cccHHHHHHHHHHHHcCCccccCcccccccccCCCe-EEeCCCCEEEEEeehhcCch
Confidence 455566667777666544444555543333332211 12346789999999998764
No 430
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.06 E-value=1.2e-10 Score=97.61 Aligned_cols=47 Identities=6% Similarity=-0.083 Sum_probs=41.4
Q ss_pred CCCcc--cccchhhhhhhccCCcEEEEcCCC-----CCCChhHHHHHHHHHHhh
Q 025293 208 SFDHG--VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 208 ~lS~G--~kqrv~la~~l~~~~~illlDep~-----~~LD~~~~~~l~~ll~~~ 254 (255)
..+++ +++++.+|++++.+|+++++|||+ ++||+..++.+.++|.+.
T Consensus 150 a~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 150 AKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred CCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 33444 777899999999999999999999 999999999999999764
No 431
>PTZ00301 uridine kinase; Provisional
Probab=99.05 E-value=5.7e-10 Score=93.50 Aligned_cols=126 Identities=22% Similarity=0.343 Sum_probs=82.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCcc
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 187 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 187 (255)
-+|||.|++|||||||.+.|...+. -.. .+....++.+|+|+.....++.. ......++.+..++
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~---~~~---------~~~~~~vi~~D~yy~~~~~~~~~---~~~~~~~d~p~a~D 68 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM---AHC---------GPVSIGVICEDFYYRDQSNIPES---ERAYTNYDHPKSLE 68 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH---hhc---------CCCeEEEeCCCCCccCcccCCHH---HhcCCCCCChhhhC
Confidence 5899999999999999998876552 001 12223347788887554322211 11112344566777
Q ss_pred HHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 188 ~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
...+.+.+..+.-+.....+.|+.....|..-.. -+..++|+|+|+.++..++ .+.++++.
T Consensus 69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~~~-~i~p~~ViIvEGi~~l~~~----~l~~l~D~ 129 (210)
T PTZ00301 69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAV-TMTPKSVLIVEGILLFTNA----ELRNEMDC 129 (210)
T ss_pred HHHHHHHHHHHHcCCcccCCCcccccCCcCCceE-EeCCCcEEEEechhhhCCH----HHHHhCCE
Confidence 7778788888877767778888877666654322 2346799999999996675 55566554
No 432
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.98 E-value=2.2e-09 Score=89.53 Aligned_cols=124 Identities=27% Similarity=0.398 Sum_probs=88.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 185 (255)
+.-+|||.|++||||||+.+.|.-.+. ..... +++.|+|+-.....+..+ .....+..+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~---------------~~~~~-~I~~D~YYk~~~~~~~~~---~~~~n~d~p~A 67 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG---------------VEKVV-VISLDDYYKDQSHLPFEE---RNKINYDHPEA 67 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC---------------cCcce-EeeccccccchhhcCHhh---cCCcCccChhh
Confidence 456899999999999999999999984 23333 488888876543322211 11123334667
Q ss_pred ccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 186 ~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++...+.+-+..+.-+.....|.||.-+..|..-. .-....+|+|+|+-+...|+ .+.++++.
T Consensus 68 ~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~~~-i~~~p~~VVIvEGi~~l~d~----~lr~~~d~ 130 (218)
T COG0572 68 FDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPET-IKVEPNDVVIVEGILLLYDE----RLRDLMDL 130 (218)
T ss_pred hcHHHHHHHHHHHHcCCcccccccchhcccccCCc-cccCCCcEEEEecccccccH----HHHhhcCE
Confidence 77788888888888888888899998777777411 12336799999999999996 66666553
No 433
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.97 E-value=3.7e-10 Score=84.18 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=31.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~ 128 (255)
+|++++|++++|++++|+||||||||||++++.
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 679999999999999999999999999999975
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.96 E-value=4e-09 Score=89.68 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=26.3
Q ss_pred cCCCcEEEEECCCCCcHHHH-HHHHHHHhc
Q 025293 104 VNVKHIVGLAGPPGAGKSTL-AAEVVRRIN 132 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTL-Lk~L~Gll~ 132 (255)
+++|+++.|+|+|||||||| ++.+.+.++
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999 689998864
No 435
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.96 E-value=4.7e-10 Score=110.42 Aligned_cols=44 Identities=11% Similarity=-0.083 Sum_probs=38.6
Q ss_pred cCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 205 ~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ 249 (255)
..+.||++|++++.+++++ ..|.++|+|||+.|+|+.....+..
T Consensus 387 ~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~ 430 (782)
T PRK00409 387 SLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAI 430 (782)
T ss_pred chhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHH
Confidence 4678999999999998887 6899999999999999988777743
No 436
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.92 E-value=6.1e-10 Score=102.39 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=35.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G 139 (255)
+|++||+++++||+++|+|||||||||||+ +|+.. |++|
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sG 59 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEG 59 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCC
Confidence 569999999999999999999999999999 67765 6666
No 437
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.91 E-value=5.8e-09 Score=94.66 Aligned_cols=124 Identities=22% Similarity=0.312 Sum_probs=72.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcc--cCh-HHHHHhcCCC
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAM--EDP-KEAHARRGAP 183 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~--~~~-~~~~~~~~~~ 183 (255)
--+|||.|++|||||||++.|.++++ +. | ...+. +.+|+|+....+.... .++ ......+|.+
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~---~~-g---------~~vgv-ISiDDfYLt~eer~kL~~~nP~n~LL~~RG~P 277 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFR---VT-G---------RKSAT-LSIDDFYLTAEGQAELRERNPGNALLELRGNA 277 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc---cc-C---------CceEE-EEECCccCChHHHHHHHhhCccchhhcccCCC
Confidence 47899999999999999999999984 21 1 23454 7899997532111000 000 0011122334
Q ss_pred CCccHHHHHHHHHhh----cccCCccCCCCCc----ccccchhhhh--hhccCCcEEEEcCCCCCCChhHH
Q 025293 184 WTFNPLLLLNCLKNL----RNQGSVYAPSFDH----GVGDPVEDDI--LVGLQHKVVIVDGNYLFLDGGVW 244 (255)
Q Consensus 184 ~~~~~~~~~~~l~~l----~~~~~~~~~~lS~----G~kqrv~la~--~l~~~~~illlDep~~~LD~~~~ 244 (255)
..++.....+.++.+ .-+....+|.|+. |+..|+.... .+...++|+|+++.+.|.-+...
T Consensus 278 GTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~ 348 (460)
T PLN03046 278 GSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPN 348 (460)
T ss_pred ccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCCh
Confidence 455554444555554 2334455666654 4455764321 23346799999999999865443
No 438
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.91 E-value=4e-09 Score=91.61 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=25.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G 139 (255)
.-++|+||||||||||+++|+|++. |++|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G 140 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS---TGIS 140 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC---CCCc
Confidence 5789999999999999999999996 5555
No 439
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.90 E-value=2.4e-09 Score=100.78 Aligned_cols=115 Identities=26% Similarity=0.434 Sum_probs=72.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCc
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 186 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 186 (255)
--+|||.||||||||||++.|++++ |. .+ ++.+++|+... ......+..+..+
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglL----p~-------------vg-vIsmDdy~~~~---------~~i~~nfD~P~a~ 117 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFM----PS-------------IA-VISMDNYNDSS---------RIIDGNFDDPRLT 117 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhC----CC-------------cE-EEEEcceecch---------hhhCccCCChhhc
Confidence 3589999999999999999999987 32 33 47888874211 0000011112223
Q ss_pred cHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 187 ~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+...+.+.+..+.-+....++.|+.-...|..-........+|+|+|+.++..+ .+.++++.
T Consensus 118 D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDl 179 (656)
T PLN02318 118 DYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDL 179 (656)
T ss_pred chhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCE
Confidence 334455566666666666778887766666532222345789999999999652 56666554
No 440
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.89 E-value=3.9e-10 Score=93.32 Aligned_cols=118 Identities=31% Similarity=0.475 Sum_probs=73.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCC--CeEEEEecCCCCCCCccCCcccChHHHHH--hcCCCC
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--DVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGAPW 184 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~--~~g~~i~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~ 184 (255)
+|||.|++|||||||.+.|...+. ..|. .+ ..+ .+.+++++... ...+....... .+..+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~----~~~~-------~~~~~~~-~~~~d~~~~~~---~~~~~~~~~~~~~~~~~p~ 65 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN----KRGI-------PAMEMDI-ILSLDDFYDDY---HLRDRKGRGENRYNFDHPD 65 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT----TCTT-------TCCCSEE-EEEGGGGBHHH---HHHHHHHHCTTTSSTTSGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----ccCc-------CccceeE-EEeeccccccc---chhhHhhccccccCCCCcc
Confidence 689999999999999999999993 3331 10 123 35566664221 00000000000 112244
Q ss_pred CccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChh
Q 025293 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~ 242 (255)
.++...+.+.+..+.-+.....+.|+.....+.. ...+..+++|+|+|+.++.+|+.
T Consensus 66 a~d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~ 122 (194)
T PF00485_consen 66 AFDFDLLKEDLKALKNGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEE 122 (194)
T ss_dssp GBSHHHHHHHHHHHHTTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHC
T ss_pred ccCHHHHHHHHHHHhCCCccccccccccccccee-eeeecCCCCEEEEcccceeeeee
Confidence 5666777778888877776677778776666555 22334588999999999999975
No 441
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.89 E-value=8.3e-10 Score=99.29 Aligned_cols=142 Identities=17% Similarity=0.141 Sum_probs=85.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE-------ecCCCCCC-CccCCcccChHHH
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL-------PMDGFHLY-LSQLDAMEDPKEA 176 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i-------~~~~~~~~-~~~l~~~~~~~~~ 176 (255)
.+|++.|++|-||.||||-+++++|-++ |.-|.+.. .++|..++ .+++|.-. ...+...-.+.+.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~----pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyv 170 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDN----PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYV 170 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCC----CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHH
Confidence 4699999999999999999999999998 88775322 12111100 01111100 0001111111111
Q ss_pred HHh----cC----C-CCCccHHHHHHHHHhhcc--cCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHH
Q 025293 177 HAR----RG----A-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (255)
Q Consensus 177 ~~~----~~----~-~~~~~~~~~~~~l~~l~~--~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~ 245 (255)
... .+ . ....+......+++.+.+ ..++.+.++|||+-||.++|.+.+..+++.++|||-+-||...+.
T Consensus 171 d~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRL 250 (592)
T KOG0063|consen 171 DQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRL 250 (592)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhh
Confidence 000 00 0 000000111223333332 256778899999999999999999999999999999999998887
Q ss_pred HHHHHHHh
Q 025293 246 DVSSMFDE 253 (255)
Q Consensus 246 ~l~~ll~~ 253 (255)
.....|..
T Consensus 251 kaA~~IRs 258 (592)
T KOG0063|consen 251 KAAITIRS 258 (592)
T ss_pred hHHHHHHH
Confidence 77666654
No 442
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.87 E-value=5.7e-09 Score=97.07 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=72.6
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 175 (255)
++++.++.+.+|.+++|+||||+||||++..|++.+. ...| ...++. +..|.+. ....+.+..
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G--------~~kV~L-I~~Dt~R-----igA~EQLr~ 307 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHG--------ASKVAL-LTTDSYR-----IGGHEQLRI 307 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcC--------CCeEEE-EeCCccc-----hhHHHHHHH
Confidence 3466777788999999999999999999999999874 4444 234453 5555542 355666777
Q ss_pred HHHhcCCCCCc--cHHHHHHHHHhhcccCCccCCCCCcccccch---hhhhhhccCC-----cEEEEcCCCCCCC
Q 025293 176 AHARRGAPWTF--NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQH-----KVVIVDGNYLFLD 240 (255)
Q Consensus 176 ~~~~~~~~~~~--~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv---~la~~l~~~~-----~illlDep~~~LD 240 (255)
+...++++... ........+..+.-.....+.. .|..++. .....++.++ .+|++|..+.+.+
T Consensus 308 ~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDT--aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~ 380 (484)
T PRK06995 308 YGKILGVPVHAVKDAADLRLALSELRNKHIVLIDT--IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT 380 (484)
T ss_pred HHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCC--CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH
Confidence 67776663221 1112222222222222233344 3433333 2222333232 6788888776644
No 443
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.82 E-value=1.7e-08 Score=87.95 Aligned_cols=106 Identities=27% Similarity=0.422 Sum_probs=59.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC----CC
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PW 184 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~ 184 (255)
++||+|+||||||||++.|++++. + ..+.++..++++.. .. ..+...++ +.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~---~-------------~~~~vi~~Dd~~~~----~~-----~~r~~~g~~~~~p~ 55 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG---S-------------DLVTVICLDDYHSL----DR-----KGRKETGITALDPR 55 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC---C-------------CceEEEECcccccC----CH-----HHHHHhhccccccc
Confidence 589999999999999999999984 2 22445666655321 11 01112222 11
Q ss_pred CccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~ 241 (255)
......+.+.++.+.-......+.|+.-...... . ..+...+++|+|++++..++
T Consensus 56 ~~~~d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~-~-~~i~~~~ivIvEG~~~l~~~ 110 (273)
T cd02026 56 ANNFDLMYEQLKALKEGQAIEKPIYNHVTGLIDP-P-ELIKPTKIVVIEGLHPLYDE 110 (273)
T ss_pred chhHHHHHHHHHHHHCCCCcccccccccCCCcCC-c-EEcCCCCEEEEeeehhhCch
Confidence 1222333445555554444444555543332111 0 11235689999999977664
No 444
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.82 E-value=3e-09 Score=89.67 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=33.0
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-+|++|.+++|++++|.||||+||||+++++++..
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 39999999999999999999999999999999875
No 445
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.81 E-value=6.6e-09 Score=95.36 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=84.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
.++.+.+++.|.... + +++. .|.+.+|++++|+|+||+|||||+++|++... ++.+. +.
T Consensus 130 ~~~r~~i~~~l~TGi-r--aID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~----------------~~~gv-I~ 188 (432)
T PRK06793 130 AFEREEITDVFETGI-K--SIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK----------------ADINV-IS 188 (432)
T ss_pred chheechhhccCCCC-E--EEec-cceecCCcEEEEECCCCCChHHHHHHHhccCC----------------CCeEE-EE
Confidence 467777888886532 2 4576 59999999999999999999999999999874 34444 43
Q ss_pred cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhc-------cCCcE
Q 025293 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKV 229 (255)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~-------~~~~i 229 (255)
..|... ..+. ++.....+.. -+++-- .-......|.+++.|++.+.+.+ ..+-+
T Consensus 189 ~iGerg----~ev~---e~~~~~l~~~----------gl~~tv--vv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VL 249 (432)
T PRK06793 189 LVGERG----REVK---DFIRKELGEE----------GMRKSV--VVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVL 249 (432)
T ss_pred eCCCCc----ccHH---HHHHHHhhhc----------ccceeE--EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 333311 0111 1111111100 000000 01234567899999998766655 67899
Q ss_pred EEEcCCCCCCChhHHHHHHHH
Q 025293 230 VIVDGNYLFLDGGVWKDVSSM 250 (255)
Q Consensus 230 lllDep~~~LD~~~~~~l~~l 250 (255)
+++|++|...|+. .++...
T Consensus 250 lilDslTr~a~A~--reisl~ 268 (432)
T PRK06793 250 LMMDSVTRFADAR--RSVDIA 268 (432)
T ss_pred EEecchHHHHHHH--HHHHHH
Confidence 9999999999984 444433
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.78 E-value=6.1e-09 Score=89.46 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=30.0
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
|.=+.+.+|++++|+||+|+|||||++.|++.+.
T Consensus 8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred eeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3345788999999999999999999999999874
No 447
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.76 E-value=2.8e-08 Score=81.72 Aligned_cols=121 Identities=24% Similarity=0.321 Sum_probs=72.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 188 (255)
+++|.|++|||||||.+.|+..+. . ..++.+++|+.....+..... ...+++.+..++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~---------------~---~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~ 59 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP---------------N---CCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM 59 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---------------C---CeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence 589999999999999999998762 1 224788888765432221100 1113344556677
Q ss_pred HHHHHHHHhhcccCCccCCCCCcccccchh-------------hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~-------------la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
..+.+.+..+.-+.....+.++.+...... -+.......+++|+|++++..|+ .+.++++.+
T Consensus 60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~ 134 (187)
T cd02024 60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIR 134 (187)
T ss_pred HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCce
Confidence 777777777765543333333443321110 11223446789999999988876 355555543
No 448
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.75 E-value=9.7e-09 Score=102.36 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=53.3
Q ss_pred HHHHhhccc---CCccCCCCCcccccchhhhhhhccCC--cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 193 ~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~--~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+..+++. .++.+..|||||+||+.+|++|+.+| +++||||||++||+.....+.++|.+.
T Consensus 469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L 535 (924)
T TIGR00630 469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRL 535 (924)
T ss_pred HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 345555554 46788999999999999999999876 899999999999999999999999764
No 449
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.74 E-value=9.2e-09 Score=102.72 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=54.3
Q ss_pred HHHHhhccc---CCccCCCCCcccccchhhhhhhccCC--cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 193 ~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~--~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.++.+++. .++.+..|||||+||+.||++|+.+| +++||||||++||+.....+.++|.+.
T Consensus 471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L 537 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHL 537 (943)
T ss_pred HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHH
Confidence 356666665 46788999999999999999999887 999999999999999999999998753
No 450
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.69 E-value=9.5e-08 Score=77.61 Aligned_cols=48 Identities=10% Similarity=-0.013 Sum_probs=36.7
Q ss_pred CCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 206 ~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
....|+||-----+...+ ...-+.|||||-++|.|.-+..+..++...
T Consensus 127 Lh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~l 174 (233)
T COG3910 127 LHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDL 174 (233)
T ss_pred hhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHH
Confidence 445699987544444444 378899999999999999998888888654
No 451
>PLN02348 phosphoribulokinase
Probab=98.67 E-value=4.4e-08 Score=88.50 Aligned_cols=121 Identities=22% Similarity=0.296 Sum_probs=73.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC----CCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS----QVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~----~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 180 (255)
+--+|||.|++|||||||.+.|...+. ..+. ..++ +........++.+|+|+..... .+...
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg----~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~---------~r~~~ 114 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFG----GAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRT---------GRKEK 114 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh----hccCCCccccccccccccCceEEEEcccccCCChh---------hHhhc
Confidence 345899999999999999999999983 2111 0000 0111233456889998753210 01111
Q ss_pred C----CCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293 181 G----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 181 ~----~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~ 241 (255)
+ .+...+...+.+.++.+.-+.....+.|+.-...... .. .+..++|+|+|+.+...|+
T Consensus 115 g~t~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~-~e-~I~p~~VVIVEGlh~L~~e 177 (395)
T PLN02348 115 GVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP-PE-LIEPPKILVIEGLHPMYDE 177 (395)
T ss_pred CCccCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC-cE-EcCCCcEEEEechhhccCc
Confidence 1 1233444556677777776666667777665444332 11 3446899999999988876
No 452
>PRK13695 putative NTPase; Provisional
Probab=98.67 E-value=4.3e-09 Score=85.50 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=36.9
Q ss_pred cCCCCCcccccchhhhhhhccCCcEEEEcC--CCCCCChhHHHHHHHHH
Q 025293 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDG--NYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 205 ~~~~lS~G~kqrv~la~~l~~~~~illlDe--p~~~LD~~~~~~l~~ll 251 (255)
+...+|++++-+..+++.....|+++++|| |+..+|+...+.+.+++
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~ 123 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL 123 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH
Confidence 344688999998888888888999999999 66677776666666665
No 453
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.66 E-value=5.4e-08 Score=79.59 Aligned_cols=112 Identities=24% Similarity=0.347 Sum_probs=66.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 188 (255)
+++|.|++|||||||.+.|...+. ..| ... .++.+++|+.+. .. . .........+..++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~----~~~---------~~~-~~i~~Ddf~~~~--~~--~--~~~~g~~d~~~~~d~ 60 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR----VNG---------IGP-VVISLDDYYVPR--KT--P--RDEDGNYDFESILDL 60 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH----HcC---------CCE-EEEehhhcccCc--cc--c--cccCCCCCCCccccH
Confidence 589999999999999999999883 222 122 347888886542 00 0 000001111211345
Q ss_pred HHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCC
Q 025293 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (255)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD 240 (255)
..+.+.+..+.-+.....+.|+.-...+..-........+|+|+|+.++..+
T Consensus 61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~ 112 (179)
T cd02028 61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE 112 (179)
T ss_pred HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH
Confidence 5566666666655555666676555554432122344678999999999643
No 454
>PRK07429 phosphoribulokinase; Provisional
Probab=98.64 E-value=1.5e-07 Score=83.89 Aligned_cols=108 Identities=26% Similarity=0.420 Sum_probs=61.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC----
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA---- 182 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---- 182 (255)
--++||.|+||||||||++.|++++. +..+.++..++++.. + .. .+...+.
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~----------------~~~~~vi~~Dd~~~~----~----~~-~r~~~g~~~l~ 62 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLG----------------EELVTVICTDDYHSY----D----RK-QRKELGITALD 62 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhc----------------cCceEEEEecccccC----C----HH-HHHhcCCcccC
Confidence 35899999999999999999999984 222334677776421 1 01 1122232
Q ss_pred CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293 183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~ 241 (255)
+...+...+...++.+.-+.....+.++........- ......+++|+|+++...++
T Consensus 63 p~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~~--~~i~p~~iVIvEG~~~l~~~ 119 (327)
T PRK07429 63 PRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPP--EYIEPNKIVVVEGLHPLYDE 119 (327)
T ss_pred ccchHHHHHHHHHHHHHCCCceecceeecCCCCcCCc--EecCCCcEEEEechhhcCcH
Confidence 1222233444555555544444444444332222211 11235689999999877775
No 455
>COG4240 Predicted kinase [General function prediction only]
Probab=98.59 E-value=8.5e-08 Score=80.00 Aligned_cols=126 Identities=33% Similarity=0.480 Sum_probs=86.4
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCcc-CCcccChHHHHHhcCC
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ-LDAMEDPKEAHARRGA 182 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~-l~~~~~~~~~~~~~~~ 182 (255)
-.+.-|+||.||-||||||+.-.|..++. ..| ....++ .++|+++....+ +...++..-....+|.
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~----~kg--------~ert~~-lSLDDlYlthadrl~La~q~npllq~RGl 113 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLA----AKG--------LERTAT-LSLDDLYLTHADRLRLARQVNPLLQTRGL 113 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHH----Hhc--------ccceEE-eehhhhhcchHHHHHHHHhcCchhcccCC
Confidence 44567999999999999999999998884 222 123454 788998765321 0111111223345677
Q ss_pred CCCccHHHHHHHHHhhcccC-CccCCCCCc----ccccchhhhhhhccCCcEEEEcCCCCCCChh
Q 025293 183 PWTFNPLLLLNCLKNLRNQG-SVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~~~-~~~~~~lS~----G~kqrv~la~~l~~~~~illlDep~~~LD~~ 242 (255)
+..++......|++.+.-+. ...++.|+. |...|..-...+-.+.+|+|+++.|.|..|.
T Consensus 114 pGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrPi 178 (300)
T COG4240 114 PGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRPI 178 (300)
T ss_pred CCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeecccC
Confidence 77788777788888776553 346677765 8888876666666679999999999996654
No 456
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.56 E-value=4.4e-08 Score=80.56 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=35.3
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
.-+.+.++.|+.++|+||||||||||++.|+|+++ |+.|.
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~ 55 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERI 55 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCE
Confidence 45667899999999999999999999999999996 66665
No 457
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.52 E-value=1.3e-07 Score=63.30 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=29.0
Q ss_pred cccccccCC-CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 98 SALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 98 ~~isl~i~~-GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
++..+++.+ |.++.|.|+||||||||+..|.=++.
T Consensus 13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 445666765 57999999999999999999988774
No 458
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.50 E-value=1.7e-08 Score=84.84 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=37.9
Q ss_pred CCCCcccccchhhhhhhccCC---cEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 207 PSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 207 ~~lS~G~kqrv~la~~l~~~~---~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
..+|.|+++.+.++..+...+ .++++|||-++|.|..+..+.++|.+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~ 284 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKE 284 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHh
Confidence 356999999988777765555 89999999999999999999999864
No 459
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.47 E-value=1.2e-07 Score=87.26 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=50.0
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
.+.++.+++++.|... +.+++.++ .|.+|++++|+|+||||||||+++|+++.. |+.|.
T Consensus 137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gv 195 (450)
T PRK06002 137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVV 195 (450)
T ss_pred CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeee
Confidence 3578999999999753 22558885 899999999999999999999999999986 77765
No 460
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.45 E-value=2.9e-07 Score=83.47 Aligned_cols=101 Identities=22% Similarity=0.261 Sum_probs=65.2
Q ss_pred CCCCccCcchHHHHhhCcC--CCCccccccc-----hhhhhhhhHHhhhc--ccCCCeEEecCchheehhhhccccccc-
Q 025293 29 LPSGHHGFLSFSWIRRNAN--AQPVFGKTRS-----LVQNKTSLKVLCSQ--RREIPVVEARCMDEVYDALAQRLLPTS- 98 (255)
Q Consensus 29 ~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~l~v~~lsk~y~~~~~~il~l~- 98 (255)
+++|....++..-|||..= .....+..|. +...+.+++..... .....-++++||++.|.+ .+ ++|+
T Consensus 73 ~~~~~d~yvs~~~i~~~~lr~gd~v~g~~R~~~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~--er-~~Le~ 149 (415)
T TIGR00767 73 LPGPDDIYVSPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPN--ER-LRLET 149 (415)
T ss_pred CCCCCCeeeCHHHHHhcCCCCCCEEEEEEeccccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCC--cc-ceeec
Confidence 4677777788888888421 1112222221 11122122111111 111235899999999976 22 2556
Q ss_pred ----------ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 99 ----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 99 ----------~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
|+++.|.+|++++|+||.|||||||++.|+..+.
T Consensus 150 ~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 150 STEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 9999999999999999999999999999999873
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.45 E-value=1e-06 Score=66.94 Aligned_cols=27 Identities=37% Similarity=0.759 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+..+.|+||+|+||||+++.|+..+.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Confidence 367899999999999999999999884
No 462
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.44 E-value=7.2e-07 Score=79.13 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=30.6
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 100 isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+++.+..|+.++|+|++|||||||++.|+++++
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 567889999999999999999999999999984
No 463
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.41 E-value=8.5e-07 Score=81.44 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=53.3
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 183 (255)
+.+|++++|+||||+||||+++.|++... -.. .+..+.++..+.+.. ...+......+..+++
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~---~~~---------~~~~v~~i~~d~~ri-----galEQL~~~a~ilGvp 250 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAV---IRH---------GADKVALLTTDSYRI-----GGHEQLRIYGKLLGVS 250 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH---Hhc---------CCCeEEEEecCCcch-----hHHHHHHHHHHHcCCc
Confidence 57899999999999999999999999641 111 112233466666542 3334455556666664
Q ss_pred CC--ccHHHHHHHHHhhcccCCccCCCCCcccccch
Q 025293 184 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV 217 (255)
Q Consensus 184 ~~--~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv 217 (255)
.. .........+..+.-.....+.. .|+.+|.
T Consensus 251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd 284 (420)
T PRK14721 251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRD 284 (420)
T ss_pred eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcch
Confidence 22 22223333444333222222332 4777764
No 464
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.40 E-value=1.2e-06 Score=74.44 Aligned_cols=119 Identities=14% Similarity=0.061 Sum_probs=63.1
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHH-HHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcC
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~-Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 181 (255)
-+++|.++.|.|++|+|||||...++ +.+. ....+.++.... +..+ .......++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~---------------~g~~~~y~~~e~--------~~~~-~~~~~~~~g 76 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK---------------QGKKVYVITTEN--------TSKS-YLKQMESVK 76 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh---------------CCCEEEEEEcCC--------CHHH-HHHHHHHCC
Confidence 47899999999999999999998874 3332 222233233321 1111 111112222
Q ss_pred CCCCccHHHHHHHHHhhccc-C-CccCCCCCcccccchhhhhhhcc--CCcEEEEcCCCCCCChhHHHHHHHH
Q 025293 182 APWTFNPLLLLNCLKNLRNQ-G-SVYAPSFDHGVGDPVEDDILVGL--QHKVVIVDGNYLFLDGGVWKDVSSM 250 (255)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~-~-~~~~~~lS~G~kqrv~la~~l~~--~~~illlDep~~~LD~~~~~~l~~l 250 (255)
+. ...... ...+.+. . .......+.++++.+.....++. +|+++++|||++.+|......+.++
T Consensus 77 ~~----~~~~~~-~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~ 144 (234)
T PRK06067 77 ID----ISDFFL-WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNF 144 (234)
T ss_pred CC----hhHHHh-CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHH
Confidence 21 111100 0011110 0 01122345677778877777665 8999999999976554444444444
No 465
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.35 E-value=1.6e-06 Score=70.70 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=37.4
Q ss_pred CccCCCCCccccc------chhhhhhhccCCcEEEEcCCCCCCC---hhHHHHHHHHHHh
Q 025293 203 SVYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLD---GGVWKDVSSMFDE 253 (255)
Q Consensus 203 ~~~~~~lS~G~kq------rv~la~~l~~~~~illlDep~~~LD---~~~~~~l~~ll~~ 253 (255)
+..+..+|+|+++ ......+...+|+++++|||++.+| ...+..+.+++..
T Consensus 66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~ 125 (187)
T cd01124 66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFA 125 (187)
T ss_pred ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHH
Confidence 3455677999887 4444444566899999999999999 6666666666643
No 466
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.34 E-value=2.7e-07 Score=84.87 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=34.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+++++ |.|.+|++++|+|+||+|||||+++|+|+..
T Consensus 145 aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 145 AINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred eccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 66999 9999999999999999999999999999885
No 467
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.32 E-value=3.2e-06 Score=72.94 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=67.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHH---HhcCC--C
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH---ARRGA--P 183 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~---~~~~~--~ 183 (255)
++||.|.+||||||+.+.|...+. ..| .. ..++..|.|+-+.. ....+...... .++.. |
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~----~~g---------~~-v~vI~~D~yyr~~r-~~~~~~~~~a~~~~~nfdHf~P 65 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA----REG---------IH-PAVVEGDSFHRYER-MEMKMAIAEALDAGRNFSHFGP 65 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH----hcC---------Cc-eEEEeccccccCCc-hhHHHHHHHHhhcCCCCCCCCc
Confidence 589999999999999999998873 111 12 23477787765321 11111101111 12333 5
Q ss_pred CCccHHHHHHHHHhhcccCCccCCCCCc------------ccccchhhhhhhccCCcEEEEcCCCCCC
Q 025293 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDH------------GVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (255)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~lS~------------G~kqrv~la~~l~~~~~illlDep~~~L 239 (255)
...+...+.+.+..++.+.....+.|.+ |.+..-. .+....+|||+++-+.++
T Consensus 66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~---~~~~p~dvIivEGLhg~~ 130 (277)
T cd02029 66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE---DLPEDTDLLFYEGLHGGV 130 (277)
T ss_pred ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcc---cccCCCcEEEECCCCccc
Confidence 5566677778888887776555565633 3332111 123578999999987544
No 468
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.31 E-value=1.9e-06 Score=67.93 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
++.|.|+||+|||||++.+++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 469
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.31 E-value=3.9e-06 Score=76.00 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=32.5
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++++.++.+.+|.+++|+||||+||||++..|++..
T Consensus 126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457778889999999999999999999999999875
No 470
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.31 E-value=5e-06 Score=80.33 Aligned_cols=116 Identities=20% Similarity=0.201 Sum_probs=64.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 185 (255)
....++|+||||+|||||+++|.+... +..|..+ ..... ++.+++..+.. +.. .......+...+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~---~~~~~~~-----~~~~~-fv~i~~~~l~~---d~~---~i~~~llg~~~~ 238 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAK---KLKHTPF-----AEDAP-FVEVDGTTLRW---DPR---EVTNPLLGSVHD 238 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhh---hccCCcc-----cCCCC-eEEEechhccC---CHH---HHhHHhcCCccH
Confidence 456799999999999999999999885 4444200 01112 24454432210 000 000111121111
Q ss_pred ccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 186 FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 186 ~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.........+..+++. ....+..+|+| +|++|| +..||+..+..+.+++++
T Consensus 239 ~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 239 PIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 0011122334444432 22334455666 899999 799999999999999864
No 471
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.30 E-value=5.5e-07 Score=73.46 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=25.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+|++++|+|+||||||||+++|++++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 599999999999999999999999984
No 472
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.29 E-value=4.9e-07 Score=84.81 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=47.7
Q ss_pred ecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 80 v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
+.|+++.|+... +++++++.+..|+.++|+||||+|||||++.|.|+++ |.+|+
T Consensus 187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~ 240 (506)
T PRK09862 187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNE 240 (506)
T ss_pred ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCc
Confidence 458888888733 5599999999999999999999999999999999997 88775
No 473
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.29 E-value=4.3e-06 Score=69.45 Aligned_cols=24 Identities=46% Similarity=0.708 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
++.|+||+||||||+++.|++.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999998884
No 474
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.27 E-value=7.3e-06 Score=70.78 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=31.1
Q ss_pred cccccccccCCCc-EEEEECCCCCcHHHHHHHHHHHh
Q 025293 96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~isl~i~~Ge-ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++..+++.++++. ++.|.||||+|||||++.+...+
T Consensus 31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 4477888787765 89999999999999999999887
No 475
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.26 E-value=6.1e-07 Score=73.68 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=24.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
|++++|+||||||||||+++|++...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999873
No 476
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.25 E-value=9.6e-07 Score=81.25 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=48.5
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
+.++.++++..|... +.+++++ |.+.+|++++|+|+||+|||||+++|+++.. ++.|.
T Consensus 128 ~~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~v 185 (433)
T PRK07594 128 PAMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNV 185 (433)
T ss_pred CceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEE
Confidence 467888899888542 2266999 9999999999999999999999999999886 66553
No 477
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=2.4e-06 Score=83.32 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=33.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
++++.++.+.+|++++|+||||+||||++..|++.+.
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 4477888888899999999999999999999999874
No 478
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.24 E-value=1.1e-06 Score=78.18 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=36.7
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
+++++ +.+.+|++++|+|+||+|||||+++|+|... |+.|.
T Consensus 59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~v 99 (326)
T cd01136 59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNV 99 (326)
T ss_pred EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence 66999 9999999999999999999999999999986 55443
No 479
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.17 E-value=1.2e-06 Score=83.70 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=44.0
Q ss_pred cCCCCCcccccchhhhhhhc----------cCCcEEEEcCCC-CCCChhHHHHHHHHHHh
Q 025293 205 YAPSFDHGVGDPVEDDILVG----------LQHKVVIVDGNY-LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 205 ~~~~lS~G~kqrv~la~~l~----------~~~~illlDep~-~~LD~~~~~~l~~ll~~ 253 (255)
.+..||+||+||+++|++++ .+|+++|+|||| .+||+..+..+.++|.+
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~ 524 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDS 524 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHh
Confidence 44689999999999999887 589999999999 68999999999998875
No 480
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.17 E-value=1.2e-06 Score=80.95 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=36.1
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G 139 (255)
+++++ |.+.+|++++|+|+||+|||||+++|+|+.. |+.|
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~g 187 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLN 187 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeE
Confidence 56999 9999999999999999999999999999985 5544
No 481
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.15 E-value=1.8e-06 Score=71.63 Aligned_cols=27 Identities=41% Similarity=0.614 Sum_probs=25.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++|++++|+||+|||||||+++|++.+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999987
No 482
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.14 E-value=2.3e-06 Score=78.88 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=37.1
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
+++++ |.+.+|++++|+|+||+|||||+++|++... |+.|.
T Consensus 135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~v 175 (422)
T TIGR02546 135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNV 175 (422)
T ss_pred eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence 56999 9999999999999999999999999999986 66554
No 483
>PRK15453 phosphoribulokinase; Provisional
Probab=98.13 E-value=1.3e-05 Score=69.77 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=63.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCC-CccCCcccChHHH-HH--hcC
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDAMEDPKEA-HA--RRG 181 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~-~~~l~~~~~~~~~-~~--~~~ 181 (255)
+.-++||.|.+||||||+.+.|+..+. ..| ....++..|+|+-+ ..++.. ..+.. +. ++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~----~~~----------~~~~vi~~D~yh~ydr~~~~~--~~~~~~r~g~nfd 67 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR----REN----------INAAVVEGDSFHRYTRPEMKA--AIAKARAAGRHFS 67 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh----hcC----------CCeEEEecccccccChhhHhh--hhHHHHhcCCCCC
Confidence 456899999999999999999998773 111 11234677777642 111111 00111 11 222
Q ss_pred C--CCCccHHHHHHHHHhhcccCCccCCCCC--ccc---ccchhh----hhhhccCCcEEEEcCCCCCC
Q 025293 182 A--PWTFNPLLLLNCLKNLRNQGSVYAPSFD--HGV---GDPVED----DILVGLQHKVVIVDGNYLFL 239 (255)
Q Consensus 182 ~--~~~~~~~~~~~~l~~l~~~~~~~~~~lS--~G~---kqrv~l----a~~l~~~~~illlDep~~~L 239 (255)
. +...+...+.+.++.++.......+.|. ..+ ..+..- -..+....+|||+++.+.+.
T Consensus 68 hf~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~ 136 (290)
T PRK15453 68 HFGPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGV 136 (290)
T ss_pred CCCCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEecccccc
Confidence 3 4555666677777777654332223332 111 111100 01123468999999987764
No 484
>PRK07667 uridine kinase; Provisional
Probab=98.12 E-value=5.3e-06 Score=68.58 Aligned_cols=106 Identities=16% Similarity=0.311 Sum_probs=59.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC---
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--- 183 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--- 183 (255)
.-+|||-|+.|||||||.+.|...+. ..| . .. .++..+++..... .+...+..
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~----~~~--------~-~~-~~i~~Dd~~~~~~----------~~~~~~~~~~~ 72 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMK----QEG--------I-PF-HIFHIDDYIVERN----------KRYHTGFEEWY 72 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH----hCC--------C-cE-EEEEcCcccchhh----------hHHhcCCCchh
Confidence 35899999999999999999999883 222 1 22 2467777643211 00011111
Q ss_pred ----CCccHHHHH-HHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCC
Q 025293 184 ----WTFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (255)
Q Consensus 184 ----~~~~~~~~~-~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~ 237 (255)
..++...+. .++..+........+.++.-.+.+..-... ...++++|+|+|++
T Consensus 73 ~~~~~~~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~~~~-~~~~~vvIvEG~~l 130 (193)
T PRK07667 73 EYYYLQWDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKKVQ-IPIVGVIVIEGVFL 130 (193)
T ss_pred hhhhhhhhHHHHHHHHHHhhcCCCeEEEeeecccccccccccee-cCCCCEEEEEehhh
Confidence 012222222 345555544444556666555444321111 23569999999995
No 485
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.12 E-value=1.7e-06 Score=88.28 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=48.6
Q ss_pred cCCccCCCCCcccccchhhhhhhcc--------CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 201 QGSVYAPSFDHGVGDPVEDDILVGL--------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 201 ~~~~~~~~lS~G~kqrv~la~~l~~--------~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
....++..|||||+++++++++|+. +|++||+||||.+||+.....++++|...
T Consensus 942 ~~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l 1003 (1047)
T PRK10246 942 DAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDAL 1003 (1047)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 3457789999999999999999985 89999999999999999999999988653
No 486
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.12 E-value=2.2e-06 Score=82.05 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=43.2
Q ss_pred CCCCcccccchhhhhhhccC----CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 207 PSFDHGVGDPVEDDILVGLQ----HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 207 ~~lS~G~kqrv~la~~l~~~----~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
..+||||++|+++|++++.. |+++|+|||+++||+.....+.++|.+.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l 490 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQL 490 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999998874 6999999999999999999999988753
No 487
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.12 E-value=2e-06 Score=87.94 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=47.8
Q ss_pred CCccCCCCCcccccchhhhhhhcc----------CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 202 GSVYAPSFDHGVGDPVEDDILVGL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 202 ~~~~~~~lS~G~kqrv~la~~l~~----------~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
...++..|||||++|+++|++|+. +|++||+||||.+||+.....++++|...
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l 1006 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAI 1006 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 456788999999999999999975 79999999999999999999999998753
No 488
>PRK08149 ATP synthase SpaL; Validated
Probab=98.11 E-value=1.7e-06 Score=79.58 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=33.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+++++ +.+.+|++++|+|+||+|||||+++|+++..
T Consensus 141 aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~ 176 (428)
T PRK08149 141 AIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE 176 (428)
T ss_pred EEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC
Confidence 66999 9999999999999999999999999999875
No 489
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.11 E-value=3e-06 Score=78.49 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=33.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+++++ |.+.+|++++|+|+||+|||||+++|++...
T Consensus 153 ~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~ 188 (440)
T TIGR01026 153 SIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE 188 (440)
T ss_pred eeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56888 9999999999999999999999999999885
No 490
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.11 E-value=2e-05 Score=67.29 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
|.+..|+||.|+|||||+-.++--.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH
Confidence 6788999999999999998886544
No 491
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.10 E-value=3.5e-06 Score=77.84 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=36.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
+++++ +.+.+|++++|+|+||+|||||+++|++... ++.|.
T Consensus 153 ~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~v 193 (441)
T PRK09099 153 IVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNV 193 (441)
T ss_pred eccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEE
Confidence 66999 9999999999999999999999999999885 55554
No 492
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.07 E-value=2.7e-05 Score=69.40 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=26.7
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
-.+|++++|+||||+||||++..|++.+.
T Consensus 111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 111 EKKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 35799999999999999999999999985
No 493
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.06 E-value=3.4e-06 Score=68.57 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=24.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999873
No 494
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=2.6e-06 Score=78.72 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=33.7
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+++++ |.+.+|++++|+|+||+|||||+++|+|+..
T Consensus 158 aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 158 SINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred eecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 66888 9999999999999999999999999999874
No 495
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.06 E-value=4.1e-06 Score=76.98 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=41.7
Q ss_pred EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
+-..++..+... +.++ |.+|.+.+|++++|+|+||+|||||+++|+++.. |+.|.
T Consensus 116 ~R~~i~~~l~tG---i~ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gv 170 (418)
T TIGR03498 116 SRARVGEPLDTG---VRVI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVV 170 (418)
T ss_pred hccCcccccCCc---cEEE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence 334455555432 2233 4699999999999999999999999999999986 66553
No 496
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=2.6e-06 Score=78.37 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=32.5
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+++.+ +.+.+|++++|+|+||+|||||+++|++...
T Consensus 152 aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 152 AINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred eecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 45666 9999999999999999999999999998763
No 497
>PRK10869 recombination and repair protein; Provisional
Probab=98.06 E-value=3.1e-06 Score=80.76 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=42.9
Q ss_pred CCCcccccchhhhhhhcc----CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 208 ~lS~G~kqrv~la~~l~~----~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+||||++|+++|++++. +|+++|+|||+++||......+.++|.+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l 480 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL 480 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 479999999999999986 58999999999999999999999988754
No 498
>PRK05922 type III secretion system ATPase; Validated
Probab=98.05 E-value=3e-06 Score=77.99 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=35.5
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
+++.+ +.+.+|++++|+|+||+|||||+++|++... ++.|.
T Consensus 147 ~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gv 187 (434)
T PRK05922 147 AIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINV 187 (434)
T ss_pred eecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceE
Confidence 44665 9999999999999999999999999999875 66554
No 499
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.05 E-value=2.9e-06 Score=68.95 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=23.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
|++++|+||||||||||++.|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 7899999999999999999999976
No 500
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.04 E-value=3.3e-06 Score=69.18 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=28.1
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+++++++.+| +.+|+||||+||||++.+|.-.+.
T Consensus 11 ~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 11 KDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 5666777776 999999999999999999998885
Done!