Query 025293
Match_columns 255
No_of_seqs 388 out of 3027
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 07:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1E-37 3.4E-42 279.1 10.1 174 75-254 22-209 (366)
2 2pcj_A ABC transporter, lipopr 100.0 1.6E-37 5.4E-42 261.9 8.2 170 75-254 2-186 (224)
3 3rlf_A Maltose/maltodextrin im 100.0 1.8E-37 6E-42 279.1 8.9 170 75-254 1-179 (381)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 1.2E-37 4.2E-42 278.2 7.4 168 76-253 3-183 (359)
5 3tif_A Uncharacterized ABC tra 100.0 3.2E-37 1.1E-41 261.8 9.1 172 77-254 1-191 (235)
6 3gfo_A Cobalt import ATP-bindi 100.0 2.9E-37 1E-41 267.5 7.5 169 76-253 6-188 (275)
7 1vpl_A ABC transporter, ATP-bi 100.0 6.6E-37 2.3E-41 262.9 8.3 171 73-253 11-191 (256)
8 2olj_A Amino acid ABC transpor 100.0 5.8E-37 2E-41 264.2 7.9 170 75-254 22-205 (263)
9 2it1_A 362AA long hypothetical 100.0 1.3E-36 4.3E-41 272.5 8.8 170 75-254 1-179 (362)
10 1z47_A CYSA, putative ABC-tran 100.0 1.6E-36 5.5E-41 271.0 9.3 170 74-253 11-190 (355)
11 2yyz_A Sugar ABC transporter, 100.0 8.3E-37 2.8E-41 273.4 7.2 169 75-253 1-178 (359)
12 1g6h_A High-affinity branched- 100.0 9.9E-37 3.4E-41 262.1 7.2 170 75-254 5-199 (257)
13 1g29_1 MALK, maltose transport 100.0 1.4E-36 4.8E-41 273.4 8.2 169 75-253 1-184 (372)
14 1v43_A Sugar-binding transport 100.0 1.7E-36 5.7E-41 272.6 8.1 169 75-253 9-186 (372)
15 1b0u_A Histidine permease; ABC 100.0 2.2E-36 7.5E-41 260.6 7.9 168 76-253 5-198 (262)
16 1sgw_A Putative ABC transporte 100.0 3E-36 1E-40 252.2 8.5 165 76-253 9-178 (214)
17 1oxx_K GLCV, glucose, ABC tran 100.0 1.2E-36 4.2E-41 272.1 6.2 171 75-253 1-185 (353)
18 4g1u_C Hemin import ATP-bindin 100.0 3.9E-36 1.3E-40 259.5 9.1 168 75-254 9-193 (266)
19 2ihy_A ABC transporter, ATP-bi 100.0 4.5E-36 1.5E-40 260.7 6.9 170 76-253 20-206 (279)
20 1ji0_A ABC transporter; ATP bi 100.0 1.1E-35 3.9E-40 253.0 8.6 167 76-253 5-184 (240)
21 3d31_A Sulfate/molybdate ABC t 100.0 1.6E-35 5.6E-40 264.1 9.7 164 77-254 1-173 (348)
22 2nq2_C Hypothetical ABC transp 100.0 2.1E-35 7.3E-40 253.1 8.5 164 76-253 3-173 (253)
23 2yz2_A Putative ABC transporte 100.0 2.1E-35 7.4E-40 254.9 8.3 169 77-253 2-183 (266)
24 2onk_A Molybdate/tungstate ABC 100.0 2.5E-35 8.5E-40 250.8 4.9 162 77-253 1-171 (240)
25 2d2e_A SUFC protein; ABC-ATPas 100.0 5E-35 1.7E-39 250.5 6.1 170 75-254 1-189 (250)
26 2zu0_C Probable ATP-dependent 100.0 2.8E-34 9.6E-39 248.1 7.4 170 75-254 18-210 (267)
27 2pjz_A Hypothetical protein ST 100.0 8.6E-34 3E-38 244.3 9.1 162 77-254 1-174 (263)
28 2ff7_A Alpha-hemolysin translo 100.0 2.6E-33 8.9E-38 239.4 8.8 161 77-253 7-190 (247)
29 2cbz_A Multidrug resistance-as 100.0 1.8E-33 6.1E-38 239.0 7.5 160 75-252 1-171 (237)
30 2ixe_A Antigen peptide transpo 100.0 4.5E-34 1.5E-38 247.2 3.8 167 76-254 15-202 (271)
31 1mv5_A LMRA, multidrug resista 100.0 5.5E-33 1.9E-37 236.9 9.9 161 77-253 1-184 (243)
32 2qi9_C Vitamin B12 import ATP- 100.0 1.2E-32 4E-37 235.5 6.1 157 77-253 4-178 (249)
33 3nh6_A ATP-binding cassette SU 100.0 1.3E-32 4.5E-37 241.5 6.0 162 76-253 52-235 (306)
34 2pze_A Cystic fibrosis transme 100.0 7.5E-32 2.6E-36 227.9 10.3 155 76-251 5-173 (229)
35 2ghi_A Transport protein; mult 100.0 2.2E-32 7.6E-37 235.3 6.5 164 76-254 16-201 (260)
36 3gd7_A Fusion complex of cysti 100.0 4E-32 1.4E-36 245.5 7.5 163 75-254 17-201 (390)
37 3b5x_A Lipid A export ATP-bind 100.0 6.6E-30 2.2E-34 242.7 9.8 165 76-254 340-526 (582)
38 2bbs_A Cystic fibrosis transme 100.0 7.2E-30 2.4E-34 222.7 8.9 150 76-251 39-202 (290)
39 3b60_A Lipid A export ATP-bind 100.0 6.1E-30 2.1E-34 242.9 8.5 164 76-253 340-525 (582)
40 4a82_A Cystic fibrosis transme 100.0 1E-29 3.5E-34 241.2 6.6 162 77-253 339-522 (578)
41 2yl4_A ATP-binding cassette SU 100.0 1.4E-29 4.6E-34 241.2 7.4 164 78-253 342-528 (595)
42 3qf4_A ABC transporter, ATP-bi 100.0 2.1E-29 7.1E-34 239.5 6.8 162 77-253 341-524 (587)
43 3ozx_A RNAse L inhibitor; ATP 100.0 7.7E-29 2.6E-33 232.8 10.3 162 75-254 267-431 (538)
44 3bk7_A ABC transporter ATP-bin 100.0 1.7E-28 5.8E-33 233.4 12.0 160 75-253 355-516 (607)
45 1yqt_A RNAse L inhibitor; ATP- 100.0 1.7E-28 5.8E-33 230.8 11.3 160 75-253 285-446 (538)
46 3qf4_B Uncharacterized ABC tra 99.9 5.6E-29 1.9E-33 237.0 5.4 161 77-253 354-536 (598)
47 3bk7_A ABC transporter ATP-bin 99.9 4.6E-28 1.6E-32 230.4 9.2 163 76-254 82-274 (607)
48 1yqt_A RNAse L inhibitor; ATP- 99.9 7.8E-28 2.7E-32 226.3 8.9 161 78-254 21-204 (538)
49 3j16_B RLI1P; ribosome recycli 99.9 2.3E-26 7.8E-31 218.6 14.3 156 81-253 350-512 (608)
50 2iw3_A Elongation factor 3A; a 99.9 7.6E-28 2.6E-32 237.2 3.3 170 75-253 669-946 (986)
51 4f4c_A Multidrug resistance pr 99.9 8.8E-27 3E-31 238.5 7.2 165 77-254 1076-1263(1321)
52 3j16_B RLI1P; ribosome recycli 99.9 3.2E-26 1.1E-30 217.6 9.4 164 82-254 82-267 (608)
53 3g5u_A MCG1178, multidrug resi 99.9 7.8E-26 2.7E-30 230.9 12.8 164 77-253 1030-1216(1284)
54 3g5u_A MCG1178, multidrug resi 99.9 2.8E-26 9.6E-31 234.2 8.7 163 77-253 387-571 (1284)
55 2iw3_A Elongation factor 3A; a 99.9 7.2E-26 2.5E-30 223.2 8.6 156 77-253 435-593 (986)
56 4f4c_A Multidrug resistance pr 99.9 1.6E-25 5.4E-30 229.2 9.3 163 77-253 415-599 (1321)
57 3ux8_A Excinuclease ABC, A sub 99.9 4.3E-25 1.5E-29 212.8 9.5 155 96-254 33-250 (670)
58 3ozx_A RNAse L inhibitor; ATP 99.9 8.9E-25 3E-29 205.2 10.9 159 81-254 3-184 (538)
59 3aez_A Pantothenate kinase; tr 99.9 4.2E-25 1.4E-29 194.5 2.7 143 76-240 42-208 (312)
60 3ux8_A Excinuclease ABC, A sub 99.9 8.8E-23 3E-27 196.7 8.9 64 191-254 523-592 (670)
61 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.2E-25 4E-30 207.5 -13.0 159 75-253 116-286 (460)
62 3b85_A Phosphate starvation-in 99.9 4.6E-23 1.6E-27 171.5 2.6 127 85-253 8-145 (208)
63 2vf7_A UVRA2, excinuclease ABC 99.8 3E-21 1E-25 188.5 9.3 65 190-254 709-779 (842)
64 4gp7_A Metallophosphoesterase; 99.8 1.5E-21 5.3E-26 157.2 5.0 105 99-243 1-118 (171)
65 1tq4_A IIGP1, interferon-induc 99.8 7.3E-23 2.5E-27 186.1 -3.2 141 96-253 38-211 (413)
66 2r6f_A Excinuclease ABC subuni 99.8 1.9E-20 6.5E-25 183.7 11.7 64 191-254 825-894 (972)
67 2ygr_A Uvrabc system protein A 99.8 3.5E-20 1.2E-24 182.4 13.3 64 191-254 843-912 (993)
68 3pih_A Uvrabc system protein A 99.8 1.4E-20 4.6E-25 185.3 6.4 65 190-254 784-854 (916)
69 2v9p_A Replication protein E1; 99.8 1.2E-21 3.9E-26 171.6 -1.1 129 77-248 101-233 (305)
70 4aby_A DNA repair protein RECN 99.8 3E-20 1E-24 169.0 5.1 46 209-254 296-343 (415)
71 2jeo_A Uridine-cytidine kinase 99.8 1.8E-19 6.2E-24 153.0 7.6 132 96-241 14-148 (245)
72 1ye8_A Protein THEP1, hypothet 99.8 5.5E-21 1.9E-25 155.2 -4.4 51 203-253 71-128 (178)
73 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 1.1E-17 3.9E-22 150.1 9.0 51 204-254 275-331 (365)
74 1e69_A Chromosome segregation 99.7 8.9E-18 3.1E-22 148.2 7.9 51 204-254 215-269 (322)
75 1z6g_A Guanylate kinase; struc 99.7 2.9E-19 1E-23 149.3 -3.0 140 96-252 12-171 (218)
76 3sop_A Neuronal-specific septi 99.7 3.9E-18 1.3E-22 147.1 2.9 127 109-249 4-136 (270)
77 3b9q_A Chloroplast SRP recepto 99.7 5.1E-18 1.7E-22 148.6 2.0 124 98-244 91-238 (302)
78 2pt7_A CAG-ALFA; ATPase, prote 99.6 1.8E-17 6E-22 146.9 1.6 92 96-237 160-251 (330)
79 3asz_A Uridine kinase; cytidin 99.6 9.6E-18 3.3E-22 138.6 -0.1 130 104-253 3-145 (211)
80 2og2_A Putative signal recogni 99.6 2.7E-17 9.3E-22 147.0 2.1 125 98-245 148-296 (359)
81 1pui_A ENGB, probable GTP-bind 99.6 5.2E-17 1.8E-21 133.5 3.7 168 76-253 2-195 (210)
82 1sq5_A Pantothenate kinase; P- 99.6 5.4E-17 1.8E-21 142.4 1.1 143 76-240 36-198 (308)
83 2obl_A ESCN; ATPase, hydrolase 99.6 2.5E-16 8.7E-21 140.3 4.3 146 76-253 44-206 (347)
84 1tf7_A KAIC; homohexamer, hexa 99.6 5.4E-16 1.8E-20 145.4 4.8 139 77-253 257-402 (525)
85 2dpy_A FLII, flagellum-specifi 99.6 7.1E-17 2.4E-21 148.0 -1.2 146 76-254 130-294 (438)
86 1odf_A YGR205W, hypothetical 3 99.6 1E-15 3.5E-20 133.2 5.0 125 104-242 28-168 (290)
87 2o8b_B DNA mismatch repair pro 99.6 3.9E-16 1.3E-20 155.9 2.6 135 76-253 749-896 (1022)
88 2qnr_A Septin-2, protein NEDD5 99.6 1.6E-16 5.6E-21 139.0 -0.2 138 81-244 2-146 (301)
89 3thx_B DNA mismatch repair pro 99.6 2.1E-16 7.2E-21 155.8 0.2 117 96-252 662-779 (918)
90 2eyu_A Twitching motility prot 99.6 1.8E-15 6.3E-20 129.7 4.7 112 77-249 5-118 (261)
91 3qkt_A DNA double-strand break 99.5 1.5E-14 5.2E-19 128.4 10.3 50 204-253 244-299 (339)
92 1cr0_A DNA primase/helicase; R 99.5 5.1E-15 1.7E-19 128.6 6.6 41 96-139 24-64 (296)
93 2i3b_A HCR-ntpase, human cance 99.5 4.6E-17 1.6E-21 133.3 -6.0 48 206-253 81-134 (189)
94 1znw_A Guanylate kinase, GMP k 99.5 2.1E-17 7.1E-22 136.7 -9.0 34 96-131 11-44 (207)
95 3szr_A Interferon-induced GTP- 99.5 2.5E-16 8.7E-21 150.0 -3.1 152 76-253 9-179 (608)
96 3tqc_A Pantothenate kinase; bi 99.5 1.5E-15 5.3E-20 133.7 1.8 141 81-241 64-211 (321)
97 2qag_C Septin-7; cell cycle, c 99.5 1E-14 3.6E-19 132.8 6.4 137 76-244 10-158 (418)
98 1ewq_A DNA mismatch repair pro 99.5 9.3E-15 3.2E-19 142.0 6.1 112 96-252 568-685 (765)
99 3thx_A DNA mismatch repair pro 99.5 1.8E-14 6.1E-19 142.5 7.9 115 96-252 651-768 (934)
100 1htw_A HI0065; nucleotide-bind 99.5 5.5E-15 1.9E-19 117.4 3.4 55 78-140 8-62 (158)
101 2o5v_A DNA replication and rep 99.5 8E-15 2.7E-19 131.1 3.8 49 205-253 261-319 (359)
102 2ehv_A Hypothetical protein PH 99.5 1.4E-15 4.6E-20 128.2 -1.7 49 76-131 5-56 (251)
103 3c8u_A Fructokinase; YP_612366 99.5 3.9E-15 1.3E-19 123.1 0.9 119 104-246 19-143 (208)
104 1tf7_A KAIC; homohexamer, hexa 99.5 1.4E-15 4.7E-20 142.6 -2.6 57 76-139 11-70 (525)
105 4a74_A DNA repair and recombin 99.4 3.7E-14 1.3E-18 117.9 3.9 132 78-242 2-141 (231)
106 1nlf_A Regulatory protein REPA 99.4 3E-13 1E-17 116.6 8.4 130 103-251 26-163 (279)
107 2qm8_A GTPase/ATPase; G protei 99.4 2.9E-15 1E-19 133.0 -5.1 59 75-140 27-85 (337)
108 2w0m_A SSO2452; RECA, SSPF, un 99.4 5.2E-14 1.8E-18 116.9 1.3 134 96-253 11-152 (235)
109 1wb9_A DNA mismatch repair pro 99.4 4.1E-13 1.4E-17 131.1 6.6 116 96-252 597-713 (800)
110 1p9r_A General secretion pathw 99.4 5.5E-14 1.9E-18 128.1 -0.1 55 77-140 143-197 (418)
111 1rj9_A FTSY, signal recognitio 99.4 2.9E-13 9.9E-18 118.5 4.0 32 106-140 101-132 (304)
112 1lw7_A Transcriptional regulat 99.3 6.3E-14 2.1E-18 125.5 -0.8 133 98-252 159-312 (365)
113 3jvv_A Twitching mobility prot 99.3 1.1E-12 3.8E-17 117.1 6.9 37 96-132 105-148 (356)
114 1pzn_A RAD51, DNA repair and r 99.3 5.5E-13 1.9E-17 118.8 4.0 119 98-242 121-247 (349)
115 2f1r_A Molybdopterin-guanine d 99.3 8.3E-13 2.8E-17 106.1 2.3 104 108-229 3-124 (171)
116 2qag_B Septin-6, protein NEDD5 99.3 5.7E-13 1.9E-17 121.2 1.5 50 76-131 15-66 (427)
117 2ga8_A Hypothetical 39.9 kDa p 99.3 1.4E-12 4.9E-17 115.6 3.2 157 96-252 11-285 (359)
118 2bbw_A Adenylate kinase 4, AK4 99.2 2.1E-13 7.2E-18 115.4 -3.4 44 203-253 147-195 (246)
119 2gza_A Type IV secretion syste 99.2 7E-12 2.4E-16 112.2 4.8 58 79-139 137-204 (361)
120 3ec2_A DNA replication protein 99.2 1.6E-11 5.4E-16 98.7 5.9 32 101-132 32-63 (180)
121 1zp6_A Hypothetical protein AT 99.2 4.9E-12 1.7E-16 102.3 2.7 28 103-130 5-32 (191)
122 2cvh_A DNA repair and recombin 99.2 5E-11 1.7E-15 98.1 8.0 110 96-242 8-121 (220)
123 3euj_A Chromosome partition pr 99.2 2E-11 7E-16 112.7 5.5 45 96-144 19-64 (483)
124 1f2t_B RAD50 ABC-ATPase; DNA d 99.2 1.2E-11 4.1E-16 97.0 3.4 51 203-253 52-108 (148)
125 1ls1_A Signal recognition part 99.2 2.3E-11 7.8E-16 105.9 5.5 130 78-252 77-207 (295)
126 3e70_C DPA, signal recognition 99.2 1.6E-12 5.6E-17 114.8 -2.1 34 103-139 125-158 (328)
127 1s96_A Guanylate kinase, GMP k 99.1 4.3E-11 1.5E-15 99.8 6.0 32 101-132 10-41 (219)
128 2kjq_A DNAA-related protein; s 99.1 1.1E-10 3.6E-15 91.6 7.2 27 106-132 35-61 (149)
129 1in4_A RUVB, holliday junction 99.1 1.8E-12 6.2E-17 114.7 -3.5 61 76-140 17-85 (334)
130 1vma_A Cell division protein F 99.1 6.4E-11 2.2E-15 103.6 6.2 99 99-237 96-197 (306)
131 2ewv_A Twitching motility prot 99.1 1.2E-10 4.1E-15 104.5 7.4 34 97-132 128-161 (372)
132 1udx_A The GTP-binding protein 99.1 6.3E-13 2.2E-17 120.9 -8.3 126 98-244 148-284 (416)
133 2x8a_A Nuclear valosin-contain 99.0 7.9E-13 2.7E-17 114.0 -9.0 35 96-132 35-69 (274)
134 3nwj_A ATSK2; P loop, shikimat 99.0 5E-11 1.7E-15 101.4 1.3 52 76-131 16-72 (250)
135 2rcn_A Probable GTPase ENGC; Y 99.0 3.1E-11 1.1E-15 107.5 -0.6 110 98-223 207-328 (358)
136 3lnc_A Guanylate kinase, GMP k 99.0 1.4E-10 4.9E-15 96.8 2.8 35 97-131 17-52 (231)
137 2yv5_A YJEQ protein; hydrolase 99.0 3.4E-10 1.2E-14 98.8 5.1 115 102-221 160-300 (302)
138 1n0w_A DNA repair protein RAD5 99.0 1.7E-09 5.7E-14 90.3 8.6 28 103-130 20-47 (243)
139 3kta_B Chromosome segregation 99.0 3.7E-10 1.3E-14 90.7 4.3 51 204-254 60-114 (173)
140 2yhs_A FTSY, cell division pro 98.9 6.9E-10 2.4E-14 102.4 4.8 39 98-139 284-322 (503)
141 3tr0_A Guanylate kinase, GMP k 98.9 6.3E-10 2.2E-14 90.7 4.0 31 101-131 1-31 (205)
142 2r6f_A Excinuclease ABC subuni 98.9 5.4E-10 1.9E-14 110.1 4.0 62 193-254 486-552 (972)
143 3pih_A Uvrabc system protein A 98.9 1E-09 3.5E-14 108.3 5.9 63 192-254 445-512 (916)
144 3kta_A Chromosome segregation 98.8 3.3E-09 1.1E-13 85.0 5.4 39 98-140 18-56 (182)
145 3k1j_A LON protease, ATP-depen 98.8 2.2E-09 7.5E-14 102.1 4.9 164 78-253 35-227 (604)
146 1qhl_A Protein (cell division 98.8 3.4E-10 1.2E-14 94.9 -1.6 49 77-140 9-57 (227)
147 2ygr_A Uvrabc system protein A 98.8 4.1E-09 1.4E-13 104.2 5.4 62 193-254 503-569 (993)
148 3lda_A DNA repair protein RAD5 98.8 6.8E-09 2.3E-13 93.9 6.0 111 103-242 174-289 (400)
149 2vf7_A UVRA2, excinuclease ABC 98.7 7E-09 2.4E-13 101.6 5.9 62 193-254 361-427 (842)
150 1sxj_E Activator 1 40 kDa subu 98.7 2.1E-08 7.3E-13 88.4 8.2 30 223-253 131-160 (354)
151 2px0_A Flagellar biosynthesis 98.7 1.3E-08 4.3E-13 88.6 6.1 32 105-139 103-134 (296)
152 1oix_A RAS-related protein RAB 98.7 1.6E-08 5.6E-13 81.6 5.9 38 214-253 151-188 (191)
153 4ad8_A DNA repair protein RECN 98.7 8E-09 2.7E-13 96.5 4.5 50 205-254 393-445 (517)
154 3uie_A Adenylyl-sulfate kinase 98.7 5.3E-09 1.8E-13 85.4 2.8 47 81-131 3-49 (200)
155 1lvg_A Guanylate kinase, GMP k 98.7 1E-08 3.5E-13 83.8 3.3 27 105-131 2-28 (198)
156 2oap_1 GSPE-2, type II secreti 98.6 4.1E-09 1.4E-13 98.2 0.8 42 96-140 249-290 (511)
157 2j41_A Guanylate kinase; GMP, 98.6 1.3E-08 4.4E-13 82.8 3.6 35 102-139 1-35 (207)
158 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 2.6E-09 9E-14 96.3 -1.3 28 103-130 16-43 (392)
159 3vaa_A Shikimate kinase, SK; s 98.6 2.3E-08 7.7E-13 81.5 4.1 36 96-131 14-49 (199)
160 3a00_A Guanylate kinase, GMP k 98.6 1.8E-08 6.2E-13 81.3 3.1 26 107-132 1-26 (186)
161 2f9l_A RAB11B, member RAS onco 98.6 1.3E-07 4.5E-12 76.5 7.8 36 216-253 129-164 (199)
162 1ixz_A ATP-dependent metallopr 98.5 1.1E-08 3.7E-13 86.4 0.7 48 78-131 26-73 (254)
163 1t9h_A YLOQ, probable GTPase E 98.5 6E-09 2.1E-13 91.0 -1.1 36 102-140 168-203 (307)
164 1u0l_A Probable GTPase ENGC; p 98.5 1.9E-08 6.4E-13 87.6 1.9 36 102-140 164-199 (301)
165 1iy2_A ATP-dependent metallopr 98.5 1.3E-08 4.5E-13 87.2 0.8 48 78-131 50-97 (278)
166 1kgd_A CASK, peripheral plasma 98.5 6.7E-08 2.3E-12 77.5 3.9 26 106-131 4-29 (180)
167 4eun_A Thermoresistant glucoki 98.5 7.8E-08 2.7E-12 78.3 4.1 31 101-131 23-53 (200)
168 1w1w_A Structural maintenance 98.5 7.2E-08 2.5E-12 87.8 3.9 46 208-253 333-382 (430)
169 2dhr_A FTSH; AAA+ protein, hex 98.4 9.9E-08 3.4E-12 88.6 4.4 48 78-131 41-88 (499)
170 2qt1_A Nicotinamide riboside k 98.4 4.7E-07 1.6E-11 73.9 8.0 34 98-131 12-45 (207)
171 1svm_A Large T antigen; AAA+ f 98.4 7.2E-08 2.5E-12 86.5 3.1 36 96-131 158-193 (377)
172 2p67_A LAO/AO transport system 98.4 3.9E-08 1.3E-12 87.1 1.3 58 76-140 29-86 (341)
173 2ce7_A Cell division protein F 98.4 1.9E-07 6.4E-12 86.3 5.4 34 96-131 40-73 (476)
174 3auy_A DNA double-strand break 98.4 1.1E-07 3.9E-12 84.9 3.7 49 205-253 277-332 (371)
175 1w1w_A Structural maintenance 98.4 1.8E-07 6.1E-12 85.2 4.9 49 77-138 6-54 (430)
176 2bdt_A BH3686; alpha-beta prot 98.4 1.8E-07 6.2E-12 75.2 3.3 24 107-130 2-25 (189)
177 4e22_A Cytidylate kinase; P-lo 98.3 1E-07 3.5E-12 80.7 1.5 33 105-140 25-60 (252)
178 1rz3_A Hypothetical protein rb 98.3 2.4E-07 8.1E-12 75.6 3.6 30 103-132 18-47 (201)
179 2vp4_A Deoxynucleoside kinase; 98.3 1.5E-07 5E-12 78.5 2.4 33 98-130 11-43 (230)
180 3tau_A Guanylate kinase, GMP k 98.3 2.5E-07 8.7E-12 75.9 3.8 28 105-132 6-33 (208)
181 1knq_A Gluconate kinase; ALFA/ 98.3 4.4E-07 1.5E-11 71.9 4.2 27 105-131 6-32 (175)
182 1zu4_A FTSY; GTPase, signal re 98.3 4.3E-07 1.5E-11 79.7 4.2 39 98-139 96-134 (320)
183 2dr3_A UPF0273 protein PH0284; 98.3 6.6E-07 2.2E-11 74.4 5.2 34 98-131 13-48 (247)
184 1kag_A SKI, shikimate kinase I 98.2 4.9E-07 1.7E-11 71.3 3.3 27 106-132 3-29 (173)
185 3cr8_A Sulfate adenylyltranfer 98.2 4.3E-07 1.5E-11 85.3 3.3 34 103-139 365-398 (552)
186 3ney_A 55 kDa erythrocyte memb 98.2 7.4E-07 2.5E-11 72.8 4.0 31 101-131 13-43 (197)
187 3ice_A Transcription terminati 98.2 5.6E-07 1.9E-11 80.6 3.3 53 77-132 133-199 (422)
188 2r6a_A DNAB helicase, replicat 98.2 5.4E-07 1.9E-11 82.7 3.1 37 96-132 192-228 (454)
189 2ius_A DNA translocase FTSK; n 98.2 4.1E-07 1.4E-11 84.5 1.4 31 99-129 159-189 (512)
190 3m6a_A ATP-dependent protease 98.1 9.5E-07 3.3E-11 82.9 3.6 50 78-132 84-133 (543)
191 1f2t_A RAD50 ABC-ATPase; DNA d 98.1 1.9E-06 6.6E-11 67.1 4.1 30 101-131 18-47 (149)
192 1nij_A Hypothetical protein YJ 98.1 1.1E-06 3.7E-11 77.0 2.9 25 107-131 4-28 (318)
193 2zr9_A Protein RECA, recombina 98.0 8.7E-06 3E-10 72.2 7.2 29 103-131 57-85 (349)
194 1cke_A CK, MSSA, protein (cyti 98.0 3.6E-06 1.2E-10 69.2 4.3 34 107-140 5-38 (227)
195 4eaq_A DTMP kinase, thymidylat 98.0 4.3E-06 1.5E-10 69.7 4.3 36 97-132 13-51 (229)
196 2ffh_A Protein (FFH); SRP54, s 98.0 2.8E-06 9.4E-11 77.3 3.3 45 80-132 79-123 (425)
197 2pez_A Bifunctional 3'-phospho 98.0 4.6E-06 1.6E-10 66.3 4.1 28 105-132 3-30 (179)
198 1j8m_F SRP54, signal recogniti 98.0 2.2E-06 7.6E-11 74.4 2.4 46 80-132 77-123 (297)
199 2xau_A PRE-mRNA-splicing facto 97.9 5.2E-06 1.8E-10 81.0 4.6 46 204-249 186-232 (773)
200 1sxj_C Activator 1 40 kDa subu 97.9 2.7E-06 9.2E-11 74.8 2.1 48 81-132 22-71 (340)
201 3kl4_A SRP54, signal recogniti 97.9 1.5E-05 5.1E-10 72.6 6.9 27 106-132 96-122 (433)
202 1fnn_A CDC6P, cell division co 97.9 1.9E-05 6.4E-10 69.9 6.9 27 106-132 41-69 (389)
203 1jjv_A Dephospho-COA kinase; P 97.9 6.2E-06 2.1E-10 67.0 3.0 21 109-129 4-24 (206)
204 1y63_A LMAJ004144AAA protein; 97.8 9.5E-06 3.2E-10 65.0 3.8 32 99-130 2-33 (184)
205 2if2_A Dephospho-COA kinase; a 97.8 8.3E-06 2.8E-10 66.1 3.3 21 109-129 3-23 (204)
206 2www_A Methylmalonic aciduria 97.8 9.7E-06 3.3E-10 71.9 3.9 33 105-140 72-104 (349)
207 3qks_A DNA double-strand break 97.8 1.3E-05 4.3E-10 65.6 4.1 32 100-132 17-48 (203)
208 4ad8_A DNA repair protein RECN 97.8 4.1E-06 1.4E-10 78.0 1.3 35 97-132 51-85 (517)
209 3t34_A Dynamin-related protein 97.8 9.2E-06 3.2E-10 72.1 3.4 46 80-129 11-56 (360)
210 4a1f_A DNAB helicase, replicat 97.8 1.6E-05 5.4E-10 70.2 4.8 114 81-240 27-141 (338)
211 2qor_A Guanylate kinase; phosp 97.8 1.2E-05 4.1E-10 65.4 3.5 29 103-131 8-36 (204)
212 1m7g_A Adenylylsulfate kinase; 97.8 1.6E-05 5.5E-10 65.0 4.0 31 102-132 20-50 (211)
213 2yvu_A Probable adenylyl-sulfa 97.8 1.9E-05 6.7E-10 63.0 4.4 31 102-132 8-38 (186)
214 2e87_A Hypothetical protein PH 97.7 5.1E-05 1.8E-09 67.2 7.2 46 206-252 229-275 (357)
215 2qag_A Septin-2, protein NEDD5 97.7 6.3E-06 2.1E-10 73.4 1.1 45 77-131 17-61 (361)
216 4fcw_A Chaperone protein CLPB; 97.7 2.1E-05 7.1E-10 67.7 4.3 25 108-132 48-72 (311)
217 1uj2_A Uridine-cytidine kinase 97.7 0.0001 3.6E-09 61.8 8.3 26 106-131 21-46 (252)
218 3t61_A Gluconokinase; PSI-biol 97.7 2.3E-05 7.7E-10 63.5 3.6 25 107-131 18-42 (202)
219 2gj8_A MNME, tRNA modification 97.7 1.7E-05 5.9E-10 62.5 2.9 26 106-131 3-28 (172)
220 1q3t_A Cytidylate kinase; nucl 97.7 3.2E-05 1.1E-09 64.3 4.2 28 104-131 13-40 (236)
221 3cm0_A Adenylate kinase; ATP-b 97.6 3.2E-05 1.1E-09 61.5 3.7 27 105-131 2-28 (186)
222 3b9p_A CG5977-PA, isoform A; A 97.6 0.00017 5.8E-09 61.7 8.6 26 106-131 53-78 (297)
223 1ega_A Protein (GTP-binding pr 97.6 2.2E-05 7.6E-10 68.0 2.6 27 105-131 6-32 (301)
224 1m2o_B GTP-binding protein SAR 97.6 3.4E-05 1.2E-09 61.7 3.4 34 96-130 13-46 (190)
225 1lv7_A FTSH; alpha/beta domain 97.5 4.8E-05 1.7E-09 63.8 3.8 33 98-132 38-70 (257)
226 2wji_A Ferrous iron transport 97.5 4.1E-05 1.4E-09 59.7 2.8 24 108-131 4-27 (165)
227 1np6_A Molybdopterin-guanine d 97.5 6.6E-05 2.2E-09 59.9 3.9 25 108-132 7-31 (174)
228 2p5t_B PEZT; postsegregational 97.5 4.3E-05 1.5E-09 64.3 2.9 33 98-131 24-56 (253)
229 3kb2_A SPBC2 prophage-derived 97.5 6.8E-05 2.3E-09 58.5 3.7 23 109-131 3-25 (173)
230 3bh0_A DNAB-like replicative h 97.5 5.1E-05 1.7E-09 66.2 3.0 35 97-131 58-92 (315)
231 1f6b_A SAR1; gtpases, N-termin 97.5 2.3E-05 7.8E-10 63.2 0.7 42 84-129 6-47 (198)
232 3hr8_A Protein RECA; alpha and 97.4 6.1E-05 2.1E-09 66.9 3.1 30 103-132 57-86 (356)
233 1vht_A Dephospho-COA kinase; s 97.4 0.0001 3.5E-09 60.2 4.0 24 106-129 3-26 (218)
234 2wjg_A FEOB, ferrous iron tran 97.4 7.6E-05 2.6E-09 59.0 3.0 23 108-130 8-30 (188)
235 3auy_A DNA double-strand break 97.3 8.6E-05 2.9E-09 66.1 3.1 31 98-129 17-47 (371)
236 3r20_A Cytidylate kinase; stru 97.3 0.00012 4.2E-09 61.1 3.9 26 106-131 8-33 (233)
237 1qhx_A CPT, protein (chloramph 97.3 0.00013 4.3E-09 57.5 3.8 25 107-131 3-27 (178)
238 2rhm_A Putative kinase; P-loop 97.3 0.00014 4.7E-09 57.9 4.0 27 105-131 3-29 (193)
239 2ze6_A Isopentenyl transferase 97.3 0.00012 4.3E-09 61.6 3.9 24 108-131 2-25 (253)
240 2jaq_A Deoxyguanosine kinase; 97.3 0.00014 4.6E-09 58.4 3.8 23 109-131 2-24 (205)
241 2zej_A Dardarin, leucine-rich 97.3 8E-05 2.7E-09 59.0 2.3 23 109-131 4-26 (184)
242 1kht_A Adenylate kinase; phosp 97.3 0.00015 5.2E-09 57.5 4.0 25 107-131 3-27 (192)
243 3iij_A Coilin-interacting nucl 97.3 0.00014 4.8E-09 57.5 3.7 28 104-131 8-35 (180)
244 1via_A Shikimate kinase; struc 97.3 0.00012 4.1E-09 57.7 3.3 23 109-131 6-28 (175)
245 1ypw_A Transitional endoplasmi 97.3 0.00011 3.8E-09 72.0 3.7 31 102-132 233-263 (806)
246 3lw7_A Adenylate kinase relate 97.3 0.00014 4.8E-09 56.5 3.3 19 109-127 3-21 (179)
247 2ohf_A Protein OLA1, GTP-bindi 97.3 0.00019 6.4E-09 64.6 4.4 28 103-130 18-45 (396)
248 1gtv_A TMK, thymidylate kinase 97.2 7.4E-05 2.5E-09 60.6 1.4 24 109-132 2-25 (214)
249 1uf9_A TT1252 protein; P-loop, 97.2 0.00019 6.6E-09 57.5 3.7 25 106-130 7-31 (203)
250 2v54_A DTMP kinase, thymidylat 97.2 0.00021 7.1E-09 57.4 3.9 27 105-131 2-28 (204)
251 1xjc_A MOBB protein homolog; s 97.2 0.00022 7.7E-09 56.6 3.9 25 108-132 5-29 (169)
252 2dy1_A Elongation factor G; tr 97.2 0.00017 5.7E-09 69.2 3.5 32 101-132 3-34 (665)
253 3cf0_A Transitional endoplasmi 97.2 0.00022 7.4E-09 61.6 3.8 30 102-131 44-73 (301)
254 2c95_A Adenylate kinase 1; tra 97.2 0.00024 8.2E-09 56.6 3.8 28 104-131 6-33 (196)
255 3ake_A Cytidylate kinase; CMP 97.2 0.00024 8.1E-09 57.2 3.8 23 109-131 4-26 (208)
256 2plr_A DTMP kinase, probable t 97.2 0.00028 9.4E-09 56.9 4.1 26 106-131 3-28 (213)
257 3trf_A Shikimate kinase, SK; a 97.2 0.00026 9E-09 56.0 3.9 25 107-131 5-29 (185)
258 1ex7_A Guanylate kinase; subst 97.2 0.00026 9E-09 57.0 3.7 22 110-131 4-25 (186)
259 2bwj_A Adenylate kinase 5; pho 97.1 0.00014 4.9E-09 58.1 2.1 31 101-131 6-36 (199)
260 2wwf_A Thymidilate kinase, put 97.1 0.00028 9.7E-09 57.0 3.9 27 105-131 8-34 (212)
261 1ly1_A Polynucleotide kinase; 97.1 0.00024 8.3E-09 55.7 3.4 22 108-129 3-24 (181)
262 1tev_A UMP-CMP kinase; ploop, 97.1 0.00031 1.1E-08 55.7 4.0 26 106-131 2-27 (196)
263 3lxx_A GTPase IMAP family memb 97.1 0.00021 7.3E-09 59.2 3.1 24 109-132 31-54 (239)
264 1nn5_A Similar to deoxythymidy 97.1 0.00033 1.1E-08 56.7 3.9 28 104-131 6-33 (215)
265 1gvn_B Zeta; postsegregational 97.1 0.00031 1.1E-08 60.3 3.8 28 104-131 30-57 (287)
266 3k53_A Ferrous iron transport 97.1 0.00024 8.1E-09 60.3 2.7 23 109-131 5-27 (271)
267 2vli_A Antibiotic resistance p 97.0 0.00024 8.2E-09 56.0 2.5 26 106-131 4-29 (183)
268 1mky_A Probable GTP-binding pr 97.0 0.00026 9E-09 64.4 3.0 24 108-131 181-204 (439)
269 2z0h_A DTMP kinase, thymidylat 97.0 0.00043 1.5E-08 55.1 3.8 23 109-131 2-24 (197)
270 1nks_A Adenylate kinase; therm 97.0 0.00041 1.4E-08 54.9 3.6 23 109-131 3-25 (194)
271 2qtf_A Protein HFLX, GTP-bindi 97.0 0.00026 8.9E-09 63.0 2.6 44 206-253 302-350 (364)
272 3d3q_A TRNA delta(2)-isopenten 97.0 0.00079 2.7E-08 59.2 5.6 24 108-131 8-31 (340)
273 1aky_A Adenylate kinase; ATP:A 97.0 0.00051 1.7E-08 56.1 4.1 26 106-131 3-28 (220)
274 2cdn_A Adenylate kinase; phosp 96.9 0.00067 2.3E-08 54.5 4.2 27 105-131 18-44 (201)
275 2ged_A SR-beta, signal recogni 96.9 0.00055 1.9E-08 54.2 3.6 25 107-131 48-72 (193)
276 3dm5_A SRP54, signal recogniti 96.9 0.0068 2.3E-07 55.2 11.2 27 106-132 99-125 (443)
277 1zd8_A GTP:AMP phosphotransfer 96.9 0.00049 1.7E-08 56.6 3.3 27 105-131 5-31 (227)
278 1ukz_A Uridylate kinase; trans 96.9 0.00065 2.2E-08 54.6 3.8 28 104-131 12-39 (203)
279 1qf9_A UMP/CMP kinase, protein 96.9 0.00073 2.5E-08 53.4 4.0 25 107-131 6-30 (194)
280 3llm_A ATP-dependent RNA helic 96.9 0.00037 1.3E-08 57.8 2.3 29 102-130 71-99 (235)
281 3fb4_A Adenylate kinase; psych 96.9 0.00066 2.3E-08 55.1 3.8 23 109-131 2-24 (216)
282 2pbr_A DTMP kinase, thymidylat 96.9 0.0007 2.4E-08 53.7 3.8 23 109-131 2-24 (195)
283 1e6c_A Shikimate kinase; phosp 96.9 0.0006 2.1E-08 53.2 3.3 24 108-131 3-26 (173)
284 1a7j_A Phosphoribulokinase; tr 96.9 0.00037 1.3E-08 60.0 2.2 26 106-131 4-29 (290)
285 1zuh_A Shikimate kinase; alpha 96.8 0.00079 2.7E-08 52.5 3.9 24 108-131 8-31 (168)
286 1zak_A Adenylate kinase; ATP:A 96.8 0.00061 2.1E-08 55.7 3.4 26 106-131 4-29 (222)
287 2pt5_A Shikimate kinase, SK; a 96.8 0.0008 2.7E-08 52.2 3.9 23 109-131 2-24 (168)
288 1z2a_A RAS-related protein RAB 96.8 0.00073 2.5E-08 51.8 3.6 23 109-131 7-29 (168)
289 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00074 2.5E-08 60.3 4.0 32 106-140 34-65 (392)
290 2dyk_A GTP-binding protein; GT 96.8 0.00078 2.7E-08 51.3 3.6 23 109-131 3-25 (161)
291 1v5w_A DMC1, meiotic recombina 96.8 0.00081 2.8E-08 59.2 4.1 29 103-131 118-146 (343)
292 2iyv_A Shikimate kinase, SK; t 96.8 0.00064 2.2E-08 53.8 3.1 24 108-131 3-26 (184)
293 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00075 2.6E-08 56.9 3.7 26 106-131 3-28 (260)
294 3b1v_A Ferrous iron uptake tra 96.8 0.00055 1.9E-08 58.4 2.8 24 108-131 4-27 (272)
295 3dl0_A Adenylate kinase; phosp 96.8 0.00072 2.5E-08 54.9 3.4 23 109-131 2-24 (216)
296 2ce2_X GTPase HRAS; signaling 96.8 0.00074 2.5E-08 51.4 3.3 23 109-131 5-27 (166)
297 1kao_A RAP2A; GTP-binding prot 96.8 0.00088 3E-08 51.1 3.6 23 109-131 5-27 (167)
298 1u8z_A RAS-related protein RAL 96.8 0.00088 3E-08 51.2 3.6 23 109-131 6-28 (168)
299 1z08_A RAS-related protein RAB 96.8 0.00091 3.1E-08 51.4 3.6 23 109-131 8-30 (170)
300 1z0j_A RAB-22, RAS-related pro 96.8 0.00092 3.2E-08 51.3 3.6 23 109-131 8-30 (170)
301 2grj_A Dephospho-COA kinase; T 96.8 0.00082 2.8E-08 54.3 3.4 25 107-131 12-36 (192)
302 1ky3_A GTP-binding protein YPT 96.7 0.00094 3.2E-08 51.9 3.6 23 109-131 10-32 (182)
303 2qby_A CDC6 homolog 1, cell di 96.7 0.00077 2.6E-08 59.1 3.4 28 105-132 43-70 (386)
304 3bos_A Putative DNA replicatio 96.7 0.0011 3.8E-08 54.0 4.1 27 106-132 51-77 (242)
305 3exa_A TRNA delta(2)-isopenten 96.7 0.0022 7.7E-08 55.8 6.1 25 107-131 3-27 (322)
306 2lkc_A Translation initiation 96.7 0.00096 3.3E-08 51.8 3.5 26 106-131 7-32 (178)
307 1ek0_A Protein (GTP-binding pr 96.7 0.00099 3.4E-08 51.1 3.6 23 109-131 5-27 (170)
308 1c1y_A RAS-related protein RAP 96.7 0.001 3.4E-08 51.0 3.6 23 109-131 5-27 (167)
309 3tlx_A Adenylate kinase 2; str 96.7 0.0012 4.1E-08 55.1 4.3 28 104-131 26-53 (243)
310 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.001 3.5E-08 51.6 3.6 23 109-131 9-31 (177)
311 2erx_A GTP-binding protein DI- 96.7 0.00085 2.9E-08 51.6 3.1 22 109-130 5-26 (172)
312 1g16_A RAS-related protein SEC 96.7 0.00094 3.2E-08 51.3 3.3 23 109-131 5-27 (170)
313 2nzj_A GTP-binding protein REM 96.7 0.0008 2.7E-08 52.0 2.8 23 109-131 6-28 (175)
314 2fn4_A P23, RAS-related protei 96.7 0.00097 3.3E-08 51.8 3.3 24 108-131 10-33 (181)
315 2oil_A CATX-8, RAS-related pro 96.7 0.0012 3.9E-08 52.3 3.6 23 109-131 27-49 (193)
316 1fzq_A ADP-ribosylation factor 96.7 0.00057 1.9E-08 53.9 1.7 24 107-130 16-39 (181)
317 1r2q_A RAS-related protein RAB 96.6 0.0012 4.1E-08 50.6 3.6 22 109-130 8-29 (170)
318 3q85_A GTP-binding protein REM 96.6 0.00089 3E-08 51.5 2.8 23 109-131 4-26 (169)
319 2xb4_A Adenylate kinase; ATP-b 96.6 0.0013 4.3E-08 54.1 3.8 23 109-131 2-24 (223)
320 2f6r_A COA synthase, bifunctio 96.6 0.0011 3.7E-08 56.7 3.5 24 106-129 74-97 (281)
321 4dsu_A GTPase KRAS, isoform 2B 96.6 0.0012 4.2E-08 51.6 3.6 23 109-131 6-28 (189)
322 3clv_A RAB5 protein, putative; 96.6 0.0012 4.2E-08 52.0 3.6 24 108-131 8-31 (208)
323 3bc1_A RAS-related protein RAB 96.6 0.0012 4.2E-08 51.7 3.6 23 109-131 13-35 (195)
324 3t1o_A Gliding protein MGLA; G 96.6 0.0012 4.3E-08 51.9 3.6 23 109-131 16-38 (198)
325 3crm_A TRNA delta(2)-isopenten 96.6 0.0022 7.4E-08 56.1 5.3 24 108-131 6-29 (323)
326 3ihw_A Centg3; RAS, centaurin, 96.6 0.0013 4.4E-08 52.1 3.6 23 108-130 21-43 (184)
327 3q72_A GTP-binding protein RAD 96.6 0.00064 2.2E-08 52.2 1.7 23 109-131 4-26 (166)
328 3pqc_A Probable GTP-binding pr 96.6 0.00087 3E-08 52.8 2.5 24 108-131 24-47 (195)
329 1r8s_A ADP-ribosylation factor 96.6 0.0013 4.6E-08 50.2 3.6 23 109-131 2-24 (164)
330 1svi_A GTP-binding protein YSX 96.6 0.00088 3E-08 53.0 2.5 24 107-130 23-46 (195)
331 3lxw_A GTPase IMAP family memb 96.6 0.001 3.5E-08 55.6 3.1 24 108-131 22-45 (247)
332 3v9p_A DTMP kinase, thymidylat 96.6 0.0012 4.1E-08 54.8 3.4 29 104-132 22-50 (227)
333 1upt_A ARL1, ADP-ribosylation 96.6 0.0016 5.5E-08 50.1 4.0 26 106-131 6-31 (171)
334 2a9k_A RAS-related protein RAL 96.6 0.0014 4.7E-08 51.2 3.6 24 108-131 19-42 (187)
335 1jal_A YCHF protein; nucleotid 96.6 0.0013 4.4E-08 58.4 3.7 24 107-130 2-25 (363)
336 3con_A GTPase NRAS; structural 96.6 0.0014 4.6E-08 51.7 3.6 24 108-131 22-45 (190)
337 3a8t_A Adenylate isopentenyltr 96.6 0.0023 7.8E-08 56.2 5.3 26 106-131 39-64 (339)
338 1z0f_A RAB14, member RAS oncog 96.6 0.0014 4.9E-08 50.7 3.6 23 109-131 17-39 (179)
339 2w58_A DNAI, primosome compone 96.6 0.0016 5.4E-08 52.2 3.9 25 108-132 55-79 (202)
340 4edh_A DTMP kinase, thymidylat 96.6 0.0017 5.7E-08 53.3 4.1 28 105-132 4-31 (213)
341 3be4_A Adenylate kinase; malar 96.6 0.0013 4.6E-08 53.6 3.5 26 106-131 4-29 (217)
342 2y8e_A RAB-protein 6, GH09086P 96.6 0.0013 4.5E-08 50.9 3.3 23 109-131 16-38 (179)
343 2g6b_A RAS-related protein RAB 96.6 0.0015 5E-08 50.8 3.6 23 109-131 12-34 (180)
344 3tw8_B RAS-related protein RAB 96.5 0.00086 3E-08 52.1 2.1 22 109-130 11-32 (181)
345 1sxj_D Activator 1 41 kDa subu 96.5 0.0011 3.8E-08 57.6 3.0 34 98-131 47-82 (353)
346 2dby_A GTP-binding protein; GD 96.5 0.0013 4.3E-08 58.6 3.3 23 109-131 3-25 (368)
347 2h92_A Cytidylate kinase; ross 96.5 0.0014 4.7E-08 53.3 3.3 25 107-131 3-27 (219)
348 1ypw_A Transitional endoplasmi 96.5 0.00071 2.4E-08 66.3 1.8 33 100-132 504-536 (806)
349 2hxs_A RAB-26, RAS-related pro 96.5 0.0014 4.7E-08 50.9 3.2 23 109-131 8-30 (178)
350 2cxx_A Probable GTP-binding pr 96.5 0.001 3.4E-08 52.3 2.4 23 109-131 3-25 (190)
351 2efe_B Small GTP-binding prote 96.5 0.0016 5.6E-08 50.6 3.6 23 109-131 14-36 (181)
352 1nrj_B SR-beta, signal recogni 96.5 0.0016 5.5E-08 52.6 3.6 24 108-131 13-36 (218)
353 1vg8_A RAS-related protein RAB 96.5 0.0017 5.7E-08 51.9 3.6 24 108-131 9-32 (207)
354 3foz_A TRNA delta(2)-isopenten 96.5 0.0036 1.2E-07 54.4 5.9 25 107-131 10-34 (316)
355 2bme_A RAB4A, RAS-related prot 96.5 0.0015 5.2E-08 51.1 3.3 24 108-131 11-34 (186)
356 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0015 5.2E-08 51.4 3.3 23 109-131 9-31 (184)
357 3lv8_A DTMP kinase, thymidylat 96.5 0.0018 6E-08 54.1 3.8 28 105-132 25-52 (236)
358 2cjw_A GTP-binding protein GEM 96.5 0.0017 5.7E-08 51.8 3.6 22 109-130 8-29 (192)
359 1njg_A DNA polymerase III subu 96.5 0.00077 2.6E-08 54.6 1.6 24 109-132 47-70 (250)
360 3kkq_A RAS-related protein M-R 96.5 0.0017 5.9E-08 50.7 3.6 24 108-131 19-42 (183)
361 2bov_A RAla, RAS-related prote 96.5 0.0017 5.8E-08 51.7 3.6 24 108-131 15-38 (206)
362 1wf3_A GTP-binding protein; GT 96.5 0.0013 4.5E-08 56.8 3.0 23 109-131 9-31 (301)
363 1e4v_A Adenylate kinase; trans 96.5 0.0017 5.7E-08 52.8 3.5 23 109-131 2-24 (214)
364 3tkl_A RAS-related protein RAB 96.5 0.0017 6E-08 51.2 3.6 23 109-131 18-40 (196)
365 2gf9_A RAS-related protein RAB 96.5 0.0017 6E-08 51.2 3.6 23 109-131 24-46 (189)
366 3iby_A Ferrous iron transport 96.5 0.0012 4.3E-08 55.6 2.8 23 109-131 3-25 (256)
367 1sky_E F1-ATPase, F1-ATP synth 96.5 0.0017 5.9E-08 59.5 3.9 31 102-132 146-176 (473)
368 2fg5_A RAB-22B, RAS-related pr 96.5 0.0017 5.7E-08 51.6 3.3 23 109-131 25-47 (192)
369 3h4m_A Proteasome-activating n 96.5 0.0019 6.5E-08 54.6 3.9 28 104-131 48-75 (285)
370 1jbk_A CLPB protein; beta barr 96.5 0.0024 8.3E-08 49.7 4.2 28 105-132 41-68 (195)
371 3umf_A Adenylate kinase; rossm 96.5 0.002 6.9E-08 53.1 3.9 31 101-131 23-53 (217)
372 2z43_A DNA repair and recombin 96.5 0.0015 5.2E-08 56.9 3.3 29 103-131 103-131 (324)
373 1ak2_A Adenylate kinase isoenz 96.4 0.0023 8E-08 52.7 4.3 26 106-131 15-40 (233)
374 1mh1_A RAC1; GTP-binding, GTPa 96.4 0.0019 6.6E-08 50.3 3.6 23 109-131 7-29 (186)
375 4tmk_A Protein (thymidylate ki 96.4 0.0021 7.2E-08 52.8 3.8 27 106-132 2-28 (213)
376 2gf0_A GTP-binding protein DI- 96.4 0.0018 6.1E-08 51.3 3.3 24 108-131 9-32 (199)
377 2wsm_A Hydrogenase expression/ 96.4 0.0018 6.1E-08 52.5 3.3 25 107-131 30-54 (221)
378 3dz8_A RAS-related protein RAB 96.4 0.0018 6.2E-08 51.2 3.3 23 109-131 25-47 (191)
379 2a5j_A RAS-related protein RAB 96.4 0.0021 7.1E-08 50.8 3.6 23 109-131 23-45 (191)
380 3oes_A GTPase rhebl1; small GT 96.4 0.0018 6.3E-08 51.7 3.3 26 106-131 23-48 (201)
381 2fv8_A H6, RHO-related GTP-bin 96.4 0.0018 6.1E-08 52.1 3.2 34 98-131 16-49 (207)
382 1z06_A RAS-related protein RAB 96.4 0.0021 7.3E-08 50.6 3.6 24 108-131 21-44 (189)
383 3iev_A GTP-binding protein ERA 96.4 0.0016 5.4E-08 56.4 3.0 24 108-131 11-34 (308)
384 3t5g_A GTP-binding protein RHE 96.4 0.0019 6.5E-08 50.3 3.3 22 109-130 8-29 (181)
385 2ew1_A RAS-related protein RAB 96.4 0.0019 6.4E-08 52.1 3.3 23 109-131 28-50 (201)
386 1ltq_A Polynucleotide kinase; 96.4 0.0019 6.6E-08 55.2 3.4 23 108-130 3-25 (301)
387 3ld9_A DTMP kinase, thymidylat 96.4 0.0027 9.3E-08 52.5 4.2 28 105-132 19-46 (223)
388 2xtp_A GTPase IMAP family memb 96.4 0.0016 5.4E-08 54.5 2.8 24 108-131 23-46 (260)
389 3reg_A RHO-like small GTPase; 96.4 0.0022 7.6E-08 50.7 3.6 24 108-131 24-47 (194)
390 3a1s_A Iron(II) transport prot 96.4 0.0018 6.1E-08 54.6 3.1 23 109-131 7-29 (258)
391 2ocp_A DGK, deoxyguanosine kin 96.4 0.0022 7.4E-08 53.2 3.6 26 106-131 1-26 (241)
392 1zd9_A ADP-ribosylation factor 96.4 0.0023 7.8E-08 50.6 3.6 25 107-131 22-46 (188)
393 1l8q_A Chromosomal replication 96.4 0.0019 6.4E-08 55.9 3.3 27 106-132 36-62 (324)
394 3bwd_D RAC-like GTP-binding pr 96.3 0.0026 9.1E-08 49.4 3.8 24 107-130 8-31 (182)
395 2atv_A RERG, RAS-like estrogen 96.3 0.0024 8.1E-08 50.7 3.6 25 107-131 28-52 (196)
396 1x3s_A RAS-related protein RAB 96.3 0.0024 8.2E-08 50.3 3.6 24 108-131 16-39 (195)
397 2p5s_A RAS and EF-hand domain 96.3 0.0024 8.2E-08 50.9 3.6 26 106-131 27-52 (199)
398 1moz_A ARL1, ADP-ribosylation 96.3 0.0015 5.1E-08 51.0 2.3 25 105-129 16-40 (183)
399 3cbq_A GTP-binding protein REM 96.3 0.0011 3.7E-08 53.1 1.5 23 108-130 24-46 (195)
400 3tmk_A Thymidylate kinase; pho 96.3 0.0027 9.4E-08 52.2 3.9 28 105-132 3-30 (216)
401 2iwr_A Centaurin gamma 1; ANK 96.3 0.0018 6.2E-08 50.3 2.7 24 108-131 8-31 (178)
402 2r62_A Cell division protease 96.3 0.001 3.6E-08 55.8 1.3 33 98-132 37-69 (268)
403 1ksh_A ARF-like protein 2; sma 96.3 0.0017 5.9E-08 50.9 2.5 25 106-130 17-41 (186)
404 2bcg_Y Protein YP2, GTP-bindin 96.3 0.0023 7.8E-08 51.2 3.3 23 109-131 10-32 (206)
405 3zvl_A Bifunctional polynucleo 96.3 0.0023 8E-08 57.7 3.7 30 102-131 253-282 (416)
406 3cph_A RAS-related protein SEC 96.3 0.0026 8.7E-08 51.0 3.6 26 106-131 19-44 (213)
407 1zbd_A Rabphilin-3A; G protein 96.3 0.0021 7.3E-08 51.2 3.0 23 109-131 10-32 (203)
408 1gwn_A RHO-related GTP-binding 96.3 0.0023 7.9E-08 51.6 3.3 24 108-131 29-52 (205)
409 3c5c_A RAS-like protein 12; GD 96.3 0.0027 9.3E-08 50.2 3.6 24 108-131 22-45 (187)
410 3i8s_A Ferrous iron transport 96.3 0.0019 6.4E-08 54.9 2.8 23 109-131 5-27 (274)
411 1zj6_A ADP-ribosylation factor 96.2 0.0021 7.2E-08 50.6 2.8 25 106-130 15-39 (187)
412 2fh5_B SR-beta, signal recogni 96.2 0.0029 9.8E-08 50.9 3.6 24 108-131 8-31 (214)
413 3eph_A TRNA isopentenyltransfe 96.2 0.0057 2E-07 55.0 5.8 24 108-131 3-26 (409)
414 2o52_A RAS-related protein RAB 96.2 0.0021 7.1E-08 51.5 2.5 22 109-130 27-48 (200)
415 3t5d_A Septin-7; GTP-binding p 96.2 0.0016 5.5E-08 55.2 1.9 22 109-130 10-31 (274)
416 2v3c_C SRP54, signal recogniti 96.2 0.0022 7.5E-08 58.3 2.9 31 102-132 92-124 (432)
417 2z4s_A Chromosomal replication 96.2 0.0027 9.2E-08 57.8 3.5 26 107-132 130-155 (440)
418 2h17_A ADP-ribosylation factor 96.2 0.002 6.7E-08 50.5 2.3 24 107-130 21-44 (181)
419 2p65_A Hypothetical protein PF 96.2 0.0031 1.1E-07 49.1 3.4 27 106-132 42-68 (187)
420 2gco_A H9, RHO-related GTP-bin 96.2 0.0029 1E-07 50.5 3.3 23 109-131 27-49 (201)
421 4dhe_A Probable GTP-binding pr 96.2 0.001 3.6E-08 53.9 0.5 25 107-131 29-53 (223)
422 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0043 1.5E-07 51.5 4.3 27 105-131 37-63 (262)
423 2qmh_A HPR kinase/phosphorylas 96.1 0.0032 1.1E-07 51.2 3.4 32 98-130 26-57 (205)
424 2qu8_A Putative nucleolar GTP- 96.1 0.0022 7.6E-08 52.4 2.5 25 107-131 29-53 (228)
425 1jwy_B Dynamin A GTPase domain 96.1 0.0024 8.1E-08 54.9 2.7 24 108-131 25-48 (315)
426 2il1_A RAB12; G-protein, GDP, 96.1 0.002 6.7E-08 51.2 2.0 23 109-131 28-50 (192)
427 2f7s_A C25KG, RAS-related prot 96.1 0.0027 9.2E-08 51.2 2.9 22 109-130 27-48 (217)
428 2h57_A ADP-ribosylation factor 96.1 0.0015 5.2E-08 51.6 1.3 25 107-131 21-45 (190)
429 2atx_A Small GTP binding prote 96.1 0.0033 1.1E-07 49.7 3.3 23 109-131 20-42 (194)
430 2hf9_A Probable hydrogenase ni 96.1 0.0031 1.1E-07 51.2 3.3 25 107-131 38-62 (226)
431 4bas_A ADP-ribosylation factor 96.1 0.0021 7.1E-08 50.9 2.1 25 107-131 17-41 (199)
432 4hlc_A DTMP kinase, thymidylat 96.1 0.0043 1.5E-07 50.5 4.0 26 107-132 2-27 (205)
433 1ko7_A HPR kinase/phosphatase; 96.1 0.0035 1.2E-07 54.5 3.5 33 96-129 134-166 (314)
434 1p5z_B DCK, deoxycytidine kina 96.1 0.0018 6.1E-08 54.5 1.7 27 105-131 22-48 (263)
435 2fu5_C RAS-related protein RAB 96.1 0.002 6.9E-08 50.3 1.9 23 109-131 10-32 (183)
436 2i1q_A DNA repair and recombin 96.1 0.003 1E-07 54.8 3.1 28 103-130 94-121 (322)
437 2q3h_A RAS homolog gene family 96.1 0.0029 9.8E-08 50.3 2.8 25 106-130 19-43 (201)
438 3llu_A RAS-related GTP-binding 96.1 0.0027 9.2E-08 50.5 2.6 24 108-131 21-44 (196)
439 2j1l_A RHO-related GTP-binding 96.0 0.0027 9.3E-08 51.4 2.6 23 108-130 35-57 (214)
440 2hup_A RAS-related protein RAB 96.0 0.0038 1.3E-07 49.9 3.3 23 109-131 31-53 (201)
441 2g3y_A GTP-binding protein GEM 96.0 0.0033 1.1E-07 51.3 2.8 23 108-130 38-60 (211)
442 3def_A T7I23.11 protein; chlor 96.0 0.0033 1.1E-07 52.9 2.8 24 108-131 37-60 (262)
443 4gzl_A RAS-related C3 botulinu 96.0 0.0042 1.4E-07 49.8 3.3 24 107-130 30-53 (204)
444 3cnl_A YLQF, putative uncharac 96.0 0.0033 1.1E-07 53.2 2.8 24 108-131 100-123 (262)
445 2r8r_A Sensor protein; KDPD, P 96.0 0.02 6.7E-07 47.4 7.4 26 106-131 4-30 (228)
446 3cpj_B GTP-binding protein YPT 95.9 0.0048 1.6E-07 50.2 3.6 23 109-131 15-37 (223)
447 3q3j_B RHO-related GTP-binding 95.9 0.0047 1.6E-07 50.0 3.6 24 107-130 27-50 (214)
448 3sr0_A Adenylate kinase; phosp 95.9 0.0046 1.6E-07 50.4 3.4 23 109-131 2-24 (206)
449 2aka_B Dynamin-1; fusion prote 95.9 0.0032 1.1E-07 53.5 2.5 24 108-131 27-50 (299)
450 1h65_A Chloroplast outer envel 95.9 0.0035 1.2E-07 52.9 2.8 23 109-131 41-63 (270)
451 2zts_A Putative uncharacterize 95.9 0.0051 1.7E-07 50.5 3.4 26 103-128 26-51 (251)
452 1u94_A RECA protein, recombina 95.8 0.0056 1.9E-07 54.2 3.8 28 104-131 60-87 (356)
453 2yc2_C IFT27, small RAB-relate 95.8 0.002 6.8E-08 51.3 0.8 23 108-130 21-43 (208)
454 2j0v_A RAC-like GTP-binding pr 95.8 0.0053 1.8E-07 49.3 3.3 24 108-131 10-33 (212)
455 3p32_A Probable GTPase RV1496/ 95.8 0.0069 2.4E-07 53.4 4.3 27 105-131 77-103 (355)
456 4djt_A GTP-binding nuclear pro 95.7 0.0018 6.2E-08 52.3 0.2 22 109-130 13-34 (218)
457 2orw_A Thymidine kinase; TMTK, 95.7 0.0063 2.2E-07 48.5 3.4 26 106-131 2-28 (184)
458 2b6h_A ADP-ribosylation factor 95.7 0.0064 2.2E-07 48.2 3.3 24 106-129 28-51 (192)
459 4dcu_A GTP-binding protein ENG 95.7 0.0033 1.1E-07 57.3 1.7 24 108-131 24-47 (456)
460 2v1u_A Cell division control p 95.6 0.006 2E-07 53.4 3.2 28 105-132 42-69 (387)
461 2chg_A Replication factor C sm 95.6 0.0076 2.6E-07 48.0 3.6 23 109-131 40-62 (226)
462 3pvs_A Replication-associated 95.6 0.0033 1.1E-07 57.4 1.5 31 102-132 43-75 (447)
463 3syl_A Protein CBBX; photosynt 95.6 0.0088 3E-07 51.0 4.0 27 106-132 66-92 (309)
464 3t15_A Ribulose bisphosphate c 95.5 0.0095 3.3E-07 51.0 4.0 27 105-131 34-60 (293)
465 3l0o_A Transcription terminati 95.5 0.0094 3.2E-07 53.4 4.0 33 99-131 167-199 (427)
466 3n70_A Transport activator; si 95.5 0.0082 2.8E-07 45.7 3.2 27 105-131 22-48 (145)
467 2x77_A ADP-ribosylation factor 95.5 0.0048 1.6E-07 48.5 1.9 24 106-129 21-44 (189)
468 1qvr_A CLPB protein; coiled co 95.5 0.021 7E-07 56.2 6.8 25 108-132 589-613 (854)
469 3gmt_A Adenylate kinase; ssgci 95.5 0.0098 3.4E-07 49.4 3.8 24 108-131 9-32 (230)
470 2q6t_A DNAB replication FORK h 95.5 0.0071 2.4E-07 55.0 3.2 34 98-131 191-224 (444)
471 3tqf_A HPR(Ser) kinase; transf 95.5 0.0084 2.9E-07 47.7 3.2 24 106-129 15-38 (181)
472 3gj0_A GTP-binding nuclear pro 95.4 0.006 2E-07 49.4 2.3 24 108-131 16-40 (221)
473 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.011 3.9E-07 51.2 4.1 27 105-131 43-69 (322)
474 1puj_A YLQF, conserved hypothe 95.3 0.0092 3.1E-07 51.0 3.1 26 106-131 119-144 (282)
475 3r7w_A Gtpase1, GTP-binding pr 95.3 0.0089 3E-07 51.5 2.9 24 107-130 3-26 (307)
476 1ofh_A ATP-dependent HSL prote 95.2 0.012 4.1E-07 49.9 3.7 26 107-132 50-75 (310)
477 1m8p_A Sulfate adenylyltransfe 95.2 0.013 4.5E-07 55.1 4.2 27 105-131 394-420 (573)
478 1wxq_A GTP-binding protein; st 95.2 0.008 2.7E-07 54.0 2.6 23 109-131 2-24 (397)
479 3geh_A MNME, tRNA modification 95.2 0.0072 2.5E-07 55.4 2.2 27 105-131 222-248 (462)
480 3hws_A ATP-dependent CLP prote 95.2 0.012 4E-07 51.8 3.6 26 106-131 50-75 (363)
481 1g8f_A Sulfate adenylyltransfe 95.2 0.012 4E-07 54.6 3.6 29 104-132 392-420 (511)
482 3th5_A RAS-related C3 botulinu 94.2 0.0034 1.2E-07 50.1 0.0 24 107-130 30-53 (204)
483 1x6v_B Bifunctional 3'-phospho 95.1 0.014 4.8E-07 55.4 4.1 26 106-131 51-76 (630)
484 2qby_B CDC6 homolog 3, cell di 95.1 0.014 5E-07 51.1 4.0 26 106-131 44-69 (384)
485 2j37_W Signal recognition part 95.1 0.016 5.4E-07 53.7 4.3 28 105-132 99-126 (504)
486 1tue_A Replication protein E1; 95.1 0.014 4.6E-07 47.8 3.4 29 104-132 55-83 (212)
487 3d8b_A Fidgetin-like protein 1 95.1 0.016 5.4E-07 51.0 4.1 27 105-131 115-141 (357)
488 3uk6_A RUVB-like 2; hexameric 95.1 0.014 4.8E-07 51.0 3.7 28 105-132 68-95 (368)
489 1d2n_A N-ethylmaleimide-sensit 95.0 0.016 5.3E-07 48.7 3.8 27 105-131 62-88 (272)
490 2vhj_A Ntpase P4, P4; non- hyd 95.0 0.011 3.9E-07 51.5 2.9 28 103-130 119-146 (331)
491 2qgz_A Helicase loader, putati 95.0 0.017 5.9E-07 49.8 4.0 25 107-131 152-176 (308)
492 2hjg_A GTP-binding protein ENG 95.0 0.0077 2.6E-07 54.6 1.7 23 109-131 5-27 (436)
493 3eie_A Vacuolar protein sortin 95.0 0.019 6.4E-07 49.7 4.1 26 106-131 50-75 (322)
494 3hjn_A DTMP kinase, thymidylat 95.0 0.019 6.3E-07 46.3 3.8 24 109-132 2-25 (197)
495 3ec1_A YQEH GTPase; atnos1, at 94.9 0.014 4.8E-07 51.8 3.3 25 106-130 161-185 (369)
496 3pfi_A Holliday junction ATP-d 94.8 0.017 5.8E-07 50.0 3.5 23 109-131 57-79 (338)
497 1xp8_A RECA protein, recombina 94.8 0.015 5.1E-07 51.6 3.1 29 103-131 70-98 (366)
498 1bif_A 6-phosphofructo-2-kinas 94.8 0.021 7.1E-07 52.2 4.1 26 106-131 38-63 (469)
499 4b4t_K 26S protease regulatory 94.7 0.023 7.9E-07 51.4 4.2 29 104-132 203-231 (428)
500 2qpt_A EH domain-containing pr 94.7 0.012 4.3E-07 55.0 2.5 26 106-131 64-89 (550)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1e-37 Score=279.09 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=138.8
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
++||+++||+|.|++....+.+|+||||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 4689999999999753222336799999999999999999999999999999999998 99999 4554321
Q ss_pred -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la 220 (255)
+..+|+ +.++.. +. ..+++.+++.+.....+.+.......+.++++.+++. .+.++..|||||||||+||
T Consensus 99 ~~~~~r~~Ig~-v~Q~~~-l~-~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 99 ELTKARRQIGM-IFQHFN-LL-SSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHHHHHTTEEE-ECSSCC-CC-TTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred HHHHHhCcEEE-EeCCCc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 134676 554432 22 2368888887776665554333345677888888876 5688999999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+.+|++||+||||++||+..+..+.++|.+.
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l 209 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDI 209 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753
No 2
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.6e-37 Score=261.91 Aligned_cols=170 Identities=16% Similarity=0.092 Sum_probs=132.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P---- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~---- 148 (255)
+++|+++||++.|++ +. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+ .+++... .
T Consensus 2 ~~~l~~~~l~~~y~~--~~--~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 2 AEILRAENIKKVIRG--YE--ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp CEEEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHH
T ss_pred CcEEEEEeEEEEECC--Ee--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHH
Confidence 357999999999987 34 5599999999999999999999999999999999998 99999 4544321 1
Q ss_pred -------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 149 -------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l 219 (255)
..+|+ +.++...+ ..+++.+++.+.....+.........+.++++.+++. .+.++..||||||||+++
T Consensus 75 ~~~~~~~~~i~~-v~q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 75 ELSLLRNRKLGF-VFQFHYLI--PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp HHHHHHHHHEEE-ECSSCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred HHHHHHhCcEEE-EecCcccC--CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 12455 44433221 2357777776654444432222234567888888875 457788999999999999
Q ss_pred hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l 186 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998653
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.8e-37 Score=279.07 Aligned_cols=170 Identities=14% Similarity=0.111 Sum_probs=138.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+|+++||+|.|++. . +|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 1 M~~l~~~~l~~~yg~~--~--~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEV--V--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp -CCEEEEEEEEEETTE--E--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred CCEEEEEeEEEEECCE--E--EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHH
Confidence 4579999999999873 3 5699999999999999999999999999999999998 99999 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
...+|. +.++.. ++ +.+++.+++.+.....+.+.......+.++++.+++. .++++.+|||||||||+||+||+.
T Consensus 74 ~r~ig~-VfQ~~~-l~-p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 74 ERGVGM-VFQSYA-LY-PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp GSCEEE-ECTTCC-CC-TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred HCCEEE-EecCCc-CC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 224665 555443 22 2378888888877666654433445677888888876 568889999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++|||||||++||+..+.+++++|.+.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l 179 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRL 179 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988653
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.2e-37 Score=278.22 Aligned_cols=168 Identities=11% Similarity=0.160 Sum_probs=132.7
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
.+|+++||+|.|++ +. +|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 3 ~~l~i~~ls~~y~~--~~--~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 3 AALHIGHLSKSFQN--TP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CCEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBC
T ss_pred cEEEEEeEEEEECC--EE--EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 37999999999987 33 5699999999999999999999999999999999998 99999 4544211
Q ss_pred ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
...+|. +.+++. ++ +.+++.+++.+.....+.+.......+.++++.+++. .++++.+|||||||||+||+|
T Consensus 76 ~~~~r~ig~-vfQ~~~-l~-p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 76 PVRERRLGY-LVQEGV-LF-PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp CGGGSCCEE-ECTTCC-CC-TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred chhhCCEEE-EeCCCc-CC-CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 134666 555443 22 2367777766544333333333345677888888876 567889999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|++|||||||++||+..+.++++.+.+
T Consensus 153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l~~ 183 (359)
T 3fvq_A 153 LAPDPELILLDEPFSALDEQLRRQIREDMIA 183 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999876643
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.2e-37 Score=261.81 Aligned_cols=172 Identities=15% Similarity=0.160 Sum_probs=130.3
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P------ 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~------ 148 (255)
||+++||++.|++......+|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++... .
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 58999999999753212225699999999999999999999999999999999998 99999 4554321 1
Q ss_pred -----CCeEEEEecCCCCCCCccCCcccChHHHHHhc---CCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccch
Q 025293 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 149 -----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv 217 (255)
..+|+ +.++...+ ..+++.+++.+..... ..........+.++++.+++. .+.++..||||||||+
T Consensus 78 ~~~~~~~i~~-v~Q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 78 TKIRRDKIGF-VFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHHHHHEEE-ECTTCCCC--TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred HHHhhccEEE-EecCCccC--CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH
Confidence 12565 44443222 2257777766544322 111112234566788888875 2677899999999999
Q ss_pred hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+||+.+|++||+||||++||+..+..+.+++.+.
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 191 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998653
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.9e-37 Score=267.54 Aligned_cols=169 Identities=17% Similarity=0.153 Sum_probs=134.0
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
++|+++||++.|++. .. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 6 ~~l~i~~ls~~y~~~-~~--~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 6 YILKVEELNYNYSDG-TH--ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEEECTTS-CE--EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred cEEEEEEEEEEECCC-Ce--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence 479999999999752 22 5699999999999999999999999999999999998 99999 4554322
Q ss_pred ---CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293 148 ---PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ---~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~ 221 (255)
...+|+ +.++. ..++ .+++.+++.+.....+.+.......+.++++.+++. .+.++..|||||||||+||+
T Consensus 80 ~~~~~~ig~-v~Q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAr 156 (275)
T 3gfo_A 80 MKLRESIGI-VFQDPDNQLF--SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG 156 (275)
T ss_dssp HHHHHSEEE-ECSSGGGTCC--SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred HHHhCcEEE-EEcCcccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHH
Confidence 123666 44432 1222 257777777766555543333344567888888876 46778899999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|+.+|++|||||||++||+.++..+.++|.+
T Consensus 157 aL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~ 188 (275)
T 3gfo_A 157 VLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188 (275)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875
No 7
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.6e-37 Score=262.88 Aligned_cols=171 Identities=13% Similarity=0.103 Sum_probs=132.2
Q ss_pred cCCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----
Q 025293 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---- 147 (255)
Q Consensus 73 ~~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---- 147 (255)
..|.+|+++||++.|++ +. +|+++||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 11 ~~~~~l~i~~l~~~y~~--~~--vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 11 HHMGAVVVKDLRKRIGK--KE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp ---CCEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCH
T ss_pred ccCCeEEEEEEEEEECC--EE--EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccH
Confidence 35789999999999986 34 5599999999999999999999999999999999998 99999 4544321
Q ss_pred ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
...+|+ +.++...+ ..+++.+++.+.....+.........+.++++.+++. .++++..||||||||+++|++
T Consensus 84 ~~~~~~i~~-v~q~~~l~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra 160 (256)
T 1vpl_A 84 HEVRKLISY-LPEEAGAY--RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA 160 (256)
T ss_dssp HHHHTTEEE-ECTTCCCC--TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHH
T ss_pred HHHhhcEEE-EcCCCCCC--CCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 123565 44433222 2357777776654433432211223567788888875 457788999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|++|||||||++||+.++..+.++|.+
T Consensus 161 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191 (256)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5.8e-37 Score=264.17 Aligned_cols=170 Identities=15% Similarity=0.194 Sum_probs=131.4
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (255)
+.+|+++||++.|++ +. +|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 22 ~~~l~i~~l~~~y~~--~~--vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 22 LQMIDVHQLKKSFGS--LE--VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTN 94 (263)
T ss_dssp CCSEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCC
T ss_pred hheEEEEeEEEEECC--EE--EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCcccc
Confidence 357999999999986 34 5599999999999999999999999999999999998 99999 45543211
Q ss_pred -----CCeEEEEecCCCCCCCccCCcccChHHHH-HhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 149 -----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la 220 (255)
..+|+ +.++.. ++ ..+++.+++.+.. ...+.........+.++++.+++. .+.++..||||||||+++|
T Consensus 95 ~~~~~~~i~~-v~Q~~~-l~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 95 LNKVREEVGM-VFQRFN-LF-PHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp HHHHHHHEEE-ECSSCC-CC-TTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred HHHHhCcEEE-EeCCCc-CC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence 12555 444432 21 2357777776643 223332212234567788888875 4677889999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l 205 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 205 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998653
No 9
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-36 Score=272.48 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=136.2
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+|+++||+|.|++ +. +|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 1 m~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 1 MVEIKLENIVKKFGN--FT--ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CCCEEEEEEEEESSS--SE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEeEEEEECC--EE--EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHh
Confidence 346999999999976 33 5599999999999999999999999999999999998 99999 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
...+|+ +.++...+ +.+++.+++.+.....+.+.......+.++++.+++. .++++..|||||||||++|++|+.
T Consensus 74 ~r~ig~-v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 74 DRNVGL-VFQNWALY--PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp GTTEEE-ECTTCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred HCcEEE-EecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 134666 55544322 2368888887766554443322334567888888876 467888999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++|||||||++||+..+..++++|.+.
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRL 179 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998653
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.6e-36 Score=270.99 Aligned_cols=170 Identities=14% Similarity=0.226 Sum_probs=136.5
Q ss_pred CCCeEEecCchhee-hhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----
Q 025293 74 EIPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---- 147 (255)
Q Consensus 74 ~~~~l~v~~lsk~y-~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---- 147 (255)
+..+|+++||+|.| ++ +. +|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 11 ~~~~l~~~~l~~~y~g~--~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~ 83 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGG--AR--SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLP 83 (355)
T ss_dssp CCEEEEEEEEEECCTTS--TT--CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCC
T ss_pred CCceEEEEEEEEEEcCC--CE--EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCC
Confidence 45689999999999 76 33 5699999999999999999999999999999999998 99999 4554321
Q ss_pred --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
...+|+ +.++...+ +.+++.+++.+.....+.+.......+.++++.+++. .++++.+|||||||||+||++|
T Consensus 84 ~~~r~ig~-v~Q~~~l~--~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL 160 (355)
T 1z47_A 84 PQKRNVGL-VFQNYALF--QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARAL 160 (355)
T ss_dssp GGGSSEEE-ECGGGCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred hhhCcEEE-EecCcccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 234666 55544322 2368888887766554443222334567888888875 5678899999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|++|||||||++||+..+..++++|.+
T Consensus 161 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 190 (355)
T 1z47_A 161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190 (355)
T ss_dssp TTCCSEEEEESTTCCSSHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998865
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=8.3e-37 Score=273.38 Aligned_cols=169 Identities=15% Similarity=0.144 Sum_probs=132.0
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+|+++||+|.|++ +. +|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 1 M~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 1 MPSIRVVNLKKYFGK--VK--AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp -CCEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEEEEEEECC--EE--EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChh
Confidence 347999999999986 33 5599999999999999999999999999999999998 99999 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
...+|+ +.++...+ +.+++.+++.+.....+.+.......+.++++.+++. .++++.+|||||||||++|++|+.
T Consensus 74 ~r~ig~-v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 74 YREVGM-VFQNYALY--PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp GTTEEE-ECSSCCCC--TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hCcEEE-EecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 234666 55543322 2367777766543222222112234567888888875 567889999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|||||||++||+..+..++++|.+
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKH 178 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998865
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.9e-37 Score=262.06 Aligned_cols=170 Identities=14% Similarity=0.106 Sum_probs=128.5
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P---- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~---- 148 (255)
+++|+++||++.|++ +. +|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++... .
T Consensus 5 ~~~l~i~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 5 MEILRTENIVKYFGE--FK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp CEEEEEEEEEEEETT--EE--EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred CcEEEEeeeEEEECC--Ee--eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 458999999999987 33 5599999999999999999999999999999999998 99999 4554321 1
Q ss_pred ----CCeEEEEecCCCCCCCccCCcccChHHHHHh--cC-----------CCCCccHHHHHHHHHhhccc--CCccCCCC
Q 025293 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLRNQ--GSVYAPSF 209 (255)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~--~~-----------~~~~~~~~~~~~~l~~l~~~--~~~~~~~l 209 (255)
..+|+ +.++.. ++ ..+++.+++.+.... .+ .........+.++++.+++. .+.++..|
T Consensus 78 ~~~~~~i~~-v~q~~~-l~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 154 (257)
T 1g6h_A 78 ELYHYGIVR-TFQTPQ-PL-KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL 154 (257)
T ss_dssp HHHHHTEEE-CCCCCG-GG-GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred HHHhCCEEE-EccCCc-cC-CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhC
Confidence 12454 443322 11 224666655442211 11 11111233567788888875 46778899
Q ss_pred CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||||||+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus 155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 199 (257)
T 1g6h_A 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998753
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.4e-36 Score=273.37 Aligned_cols=169 Identities=13% Similarity=0.095 Sum_probs=135.5
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------- 146 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~------- 146 (255)
|.+|+++||+|.|++ +. +|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++..
T Consensus 1 M~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 1 MAGVRLVDVWKVFGE--VT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp CEEEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred CCEEEEEeEEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECcccccc
Confidence 447999999999986 33 5599999999999999999999999999999999998 99999 454421
Q ss_pred --C---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293 147 --K---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 147 --~---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l 219 (255)
. ...+|+ +.++...+ +.+++.+++.+.....+.+.......+.++++.+++. .++++.+|||||||||++
T Consensus 74 ~~~~~~~r~ig~-v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 74 IFVPPKDRDIAM-VFQSYALY--PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp EECCGGGSSEEE-ECSCCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred ccCCHhHCCEEE-EeCCCccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHH
Confidence 1 124665 55543322 2368888888766555443322334567888888876 567889999999999999
Q ss_pred hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|++|+.+|++|||||||++||+..+..++++|.+
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 184 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998865
No 14
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.7e-36 Score=272.61 Aligned_cols=169 Identities=12% Similarity=0.113 Sum_probs=129.9
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+|+++||+|.|++ +. +|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 9 M~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 9 MVEVKLENLTKRFGN--FT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CCCEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred eeeEEEEEEEEEECC--EE--EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence 557999999999986 33 5599999999999999999999999999999999998 99999 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
...+|+ +.+++..+ +.+++.+++.+.....+.+.......+.++++.+++. .++++.+|||||||||++|++|+.
T Consensus 82 ~r~ig~-v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 82 DRNISM-VFQSYAVW--PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp GGTEEE-EEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred hCcEEE-EecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 124666 55544322 2367777665532222222222234567888888875 567889999999999999999999
Q ss_pred CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|||||||++||+..+..++++|.+
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 186 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKK 186 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999865
No 15
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-36 Score=260.58 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=130.5
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++|+++||++.|++ +. +|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 5 ~~l~i~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG--HE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CCEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTT
T ss_pred ceEEEeeEEEEECC--EE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccccccc
Confidence 37999999999986 34 5599999999999999999999999999999999998 99999 45443211
Q ss_pred ---------------CCeEEEEecCCCCCCCccCCcccChHHHH-HhcCCCCCccHHHHHHHHHhhccc---CCccCCCC
Q 025293 149 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSF 209 (255)
Q Consensus 149 ---------------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~l 209 (255)
..+|+ +.++.. ++ ..+++.+++.+.. ...+.........+.++++.+++. .+.++..|
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~-v~Q~~~-l~-~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 154 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTM-VFQHFN-LW-SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 154 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEE-ECSSCC-CC-TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred ccccccChhhHHHHhcceEE-EecCcc-cC-CCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccC
Confidence 12455 444432 21 2357777776643 222322112234567788888875 46778899
Q ss_pred CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||||||||++|++|+.+|++|||||||++||+.++..+.++|.+
T Consensus 155 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 198 (262)
T 1b0u_A 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ 198 (262)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999865
No 16
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3e-36 Score=252.20 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=130.8
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC---CCCCe
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV---KPPDV 151 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~---~~~~~ 151 (255)
.+|+++||++.|++ . +|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++.. ....+
T Consensus 9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGE
T ss_pred ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCcE
Confidence 58999999999975 3 6699999999999999999999999999999999998 99999 444421 12235
Q ss_pred EEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC-CccCCCCCcccccchhhhhhhccCCcEE
Q 025293 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lS~G~kqrv~la~~l~~~~~il 230 (255)
++ +.++...+ ..+++.+++.+.....+. .. ....+.++++.+++.. +.++..||||||||+++|++|+.+|++|
T Consensus 81 ~~-v~q~~~~~--~~~tv~enl~~~~~~~~~-~~-~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~ll 155 (214)
T 1sgw_A 81 FF-LPEEIIVP--RKISVEDYLKAVASLYGV-KV-NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIY 155 (214)
T ss_dssp EE-ECSSCCCC--TTSBHHHHHHHHHHHTTC-CC-CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred EE-EeCCCcCC--CCCCHHHHHHHHHHhcCC-ch-HHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 55 44433221 225777777665443332 22 2456778888888754 6677899999999999999999999999
Q ss_pred EEcCCCCCCChhHHHHHHHHHHh
Q 025293 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 llDep~~~LD~~~~~~l~~ll~~ 253 (255)
||||||++||+.++..+.+++.+
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~ 178 (214)
T 1sgw_A 156 VLDDPVVAIDEDSKHKVLKSILE 178 (214)
T ss_dssp EEESTTTTSCTTTHHHHHHHHHH
T ss_pred EEECCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999865
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.2e-36 Score=272.12 Aligned_cols=171 Identities=13% Similarity=0.150 Sum_probs=133.0
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-------
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------- 146 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~------- 146 (255)
|.+|+++||+|.|++ +...+|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++..
T Consensus 1 M~~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 75 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL 75 (353)
T ss_dssp CCCEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred CcEEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECcccccc
Confidence 457999999999986 44013499999999999999999999999999999999998 99999 454421
Q ss_pred -C---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293 147 -K---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 147 -~---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la 220 (255)
. ...+|+ +.++...+ +.+++.+++.+.....+.+.......+.++++.+++. .++++.+|||||||||++|
T Consensus 76 ~~~~~~r~ig~-v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 76 IVPPEDRKIGM-VFQTWALY--PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp SSCGGGSCEEE-EETTSCCC--TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred cCChhhCCEEE-EeCCCccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 1 124565 55544322 2367777776544333332222234567888888876 4678899999999999999
Q ss_pred hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++|+.+|++|||||||++||+..+..++++|.+
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 185 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999865
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.9e-36 Score=259.51 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=129.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (255)
+++|+++||++.|++ +. +|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 9 ~~~l~~~~l~~~~~~--~~--vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ--QA--LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CCEEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred cceEEEEeEEEEeCC--ee--EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence 468999999999987 34 5599999999999999999999999999999999998 99999 45543221
Q ss_pred ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
...|+ +.+.....+ .+++.+++.+..... ........+.++++.+++. .+.++..||||||||++||++|
T Consensus 82 ~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 82 ALARTRAV-MRQYSELAF--PFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp HHHHHEEE-ECSCCCCCS--CCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHhheEEE-EecCCccCC--CCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 12454 444332211 245555554432211 2223345677888888875 4577889999999999999999
Q ss_pred cc------CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 224 GL------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~------~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+. +|++||+||||++||+..+..+.++|.+.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l 193 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQL 193 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999998753
No 19
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.5e-36 Score=260.73 Aligned_cols=170 Identities=12% Similarity=0.011 Sum_probs=126.9
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++|+++||++.|++ +. +|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 20 ~~l~~~~l~~~y~~--~~--vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG--KT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred ceEEEEeEEEEECC--EE--EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence 47999999999987 34 5599999999999999999999999999999999998 99999 45543221
Q ss_pred ----CCeEEEEecCCCCCCCccCCcccChHHHHHh----cCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchh
Q 025293 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~ 218 (255)
..+|+ +.++........+++.+++.+.... .+.........+.++++.+++. .++++..||||||||++
T Consensus 93 ~~~~~~i~~-v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~ 171 (279)
T 2ihy_A 93 ETVRQHIGF-VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM 171 (279)
T ss_dssp HHHHTTEEE-ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred HHHcCcEEE-EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence 23565 4443221111123555554432100 1111111233466788888875 46778899999999999
Q ss_pred hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|+.+|++|||||||++||+.++..+.++|.+
T Consensus 172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~ 206 (279)
T 2ihy_A 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDS 206 (279)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999865
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-35 Score=253.04 Aligned_cols=167 Identities=17% Similarity=0.122 Sum_probs=126.7
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----- 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----- 148 (255)
++|+++||++.|++ +. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+ .+++... .
T Consensus 5 ~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYYGA--IH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeEEEEECC--ee--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence 47999999999987 34 5599999999999999999999999999999999998 99999 4554321 1
Q ss_pred ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhc-cc--CCccCCCCCcccccchhhhhh
Q 025293 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-NQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~--~~~~~~~lS~G~kqrv~la~~ 222 (255)
..+|+ +.++...+ ..+++.+++.+.. ............+..+++.++ +. .+.++..||||||||+++|++
T Consensus 78 ~~~~~i~~-v~q~~~l~--~~ltv~enl~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 78 INRMGIAL-VPEGRRIF--PELTVYENLMMGA-YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp HHHTTEEE-ECSSCCCC--TTSBHHHHHHGGG-TTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred HHhCCEEE-EecCCccC--CCCcHHHHHHHhh-hcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHH
Confidence 12565 44433221 2246666554432 111112222334566777774 54 467789999999999999999
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|++|||||||++||+.++..+.++|.+
T Consensus 154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 184 (240)
T 1ji0_A 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.6e-35 Score=264.09 Aligned_cols=164 Identities=13% Similarity=0.144 Sum_probs=133.2
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CC
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~ 149 (255)
||+++||+|.|++ + +++|+||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++... ..
T Consensus 1 ml~~~~l~~~y~~--~---~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWKN--F---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp CEEEEEEEEECSS--C---EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEECC--E---EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence 4899999999976 4 4599999999999999999999999999999999998 99999 4554321 12
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~ 227 (255)
.+|+ +.++...+ +.+++.+++.+.....+.+.. ..+.++++.+++. .++++.+|||||||||++|++|+.+|
T Consensus 73 ~ig~-v~Q~~~l~--~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 73 DIAF-VYQNYSLF--PHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp TCEE-ECTTCCCC--TTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred cEEE-EecCcccC--CCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3566 55544322 236888888776554443322 5677888988876 46788899999999999999999999
Q ss_pred cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 228 KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 228 ~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++|||||||++||+..+..++++|.+.
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l 173 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVL 173 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998653
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.1e-35 Score=253.14 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=126.8
Q ss_pred CeEEecCchheeh-hhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~v~~lsk~y~-~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (255)
++|+++||++.|+ + +. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|++.. ...+|+
T Consensus 3 ~~l~i~~l~~~y~~~--~~--vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~----~~~i~~- 70 (253)
T 2nq2_C 3 KALSVENLGFYYQAE--NF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV----YQSIGF- 70 (253)
T ss_dssp EEEEEEEEEEEETTT--TE--EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE----CSCEEE-
T ss_pred ceEEEeeEEEEeCCC--Ce--EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE----eccEEE-
Confidence 3799999999998 5 33 5599999999999999999999999999999999998 99997431 234565
Q ss_pred EecCCCCCCCccCCcccChHHHHHhc-CC---CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~-~~---~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ 228 (255)
+.++...+. .+++.+++.+..... +. ........+.++++.+++. .+.++..||||||||+++|++|+.+|+
T Consensus 71 v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 71 VPQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp ECSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EcCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 444332221 246666655432211 11 1112234567788888875 467788999999999999999999999
Q ss_pred EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|||||||++||+.++..+.++|.+
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~ 173 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLID 173 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-35 Score=254.93 Aligned_cols=169 Identities=15% Similarity=0.138 Sum_probs=128.9
Q ss_pred eEEecCchheeh-hhh--cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----
Q 025293 77 VVEARCMDEVYD-ALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~-~~~--~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (255)
||+++||++.|+ +.. +. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~--vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~ 76 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKK--ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGYEI 76 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEE--EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHHHH
T ss_pred EEEEEEEEEEecCCCccccc--eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchHHh
Confidence 689999999997 210 12 5699999999999999999999999999999999998 99999 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc----CCccCCCCCcccccchhhhhhh
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lS~G~kqrv~la~~l 223 (255)
...+|+ +.++...... .+++.+++.+..... .........+.++++.+++. .+.++..||||||||+++|++|
T Consensus 77 ~~~i~~-v~q~~~~~~~-~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL 153 (266)
T 2yz2_A 77 RRNIGI-AFQYPEDQFF-AERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVI 153 (266)
T ss_dssp GGGEEE-ECSSGGGGCC-CSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhhEEE-EeccchhhcC-CCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHH
Confidence 123565 4443211111 246666655432221 22223345677888988886 4677889999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|++|||||||++||+.++..+.++|.+
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 183 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEK 183 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-35 Score=250.85 Aligned_cols=162 Identities=12% Similarity=0.070 Sum_probs=121.6
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CC
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~ 149 (255)
||+++||++.|++ +|+|+||+|++ |++||+||||||||||+|+|+|+++ |++|+ .+++... ..
T Consensus 1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence 4789999999975 35999999999 9999999999999999999999998 99999 4444211 12
Q ss_pred CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~ 227 (255)
.+|+ +.++.. + ...+++.+++.+.....+. ......+.++++.+++. .+.++..||||||||+++|++|+.+|
T Consensus 71 ~i~~-v~q~~~-l-~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 145 (240)
T 2onk_A 71 GIGF-VPQDYA-L-FPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP 145 (240)
T ss_dssp CCBC-CCSSCC-C-CTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEE-EcCCCc-c-CCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3444 333221 1 1124555544332111110 11134567788888875 45778899999999999999999999
Q ss_pred cEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++||+||||++||+.++..+.+++.+
T Consensus 146 ~lllLDEPts~LD~~~~~~~~~~l~~ 171 (240)
T 2onk_A 146 RLLLLDEPLSAVDLKTKGVLMEELRF 171 (240)
T ss_dssp SSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=5e-35 Score=250.49 Aligned_cols=170 Identities=18% Similarity=0.080 Sum_probs=120.6
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH--hcccCCCCCc-cCCCCCC-C--
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQVK-P-- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl--l~~~~p~~G~-~~~~~~~-~-- 148 (255)
|++|+++||++.|++ +. +|+|+||+|++||+++|+||||||||||+|+|+|+ ++ |++|+ .+++... .
T Consensus 1 M~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 1 MSQLEIRDLWASIDG--ET--ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELS 73 (250)
T ss_dssp -CEEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSC
T ss_pred CceEEEEeEEEEECC--EE--EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCC
Confidence 347999999999986 34 55999999999999999999999999999999998 66 89998 4544321 1
Q ss_pred ------CCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCC--CccHHHHHHHHHhhccc---CCccCCC-CCccccc
Q 025293 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW--TFNPLLLLNCLKNLRNQ---GSVYAPS-FDHGVGD 215 (255)
Q Consensus 149 ------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~l~~l~~~---~~~~~~~-lS~G~kq 215 (255)
..+++ +.++...+ ..+++.++..+.... .+... ......+.++++.+++. .+.++.. |||||||
T Consensus 74 ~~~~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 74 PDERARKGLFL-AFQYPVEV--PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKK 150 (250)
T ss_dssp HHHHHHTTBCC-CCCCCC-C--CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHH
T ss_pred HHHHHhCcEEE-eccCCccc--cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence 01222 22222111 124555555443321 12111 11123456788888873 4567788 9999999
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 189 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM 189 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.8e-34 Score=248.06 Aligned_cols=170 Identities=16% Similarity=0.095 Sum_probs=123.3
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCCc-cCCCCCC-C--
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVK-P-- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p~~G~-~~~~~~~-~-- 148 (255)
+++|+++||++.|++ +. +|+|+||+|++||+++|+||||||||||+|+|+|++ + |++|+ .+++... .
T Consensus 18 ~~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED--KA--ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS 90 (267)
T ss_dssp --CEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred CceEEEEeEEEEECC--EE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence 457999999999976 34 559999999999999999999999999999999983 5 88998 4544311 0
Q ss_pred ------CCeEEEEecCCCCCCCccCCcccChHHHHH-h---cCCCC---CccHHHHHHHHHhhccc---CCccCC-CCCc
Q 025293 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPW---TFNPLLLLNCLKNLRNQ---GSVYAP-SFDH 211 (255)
Q Consensus 149 ------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~---~~~~~---~~~~~~~~~~l~~l~~~---~~~~~~-~lS~ 211 (255)
..+++ +.++...+ ..+++.++...... . .+... ......+.++++.+++. .+.++. .|||
T Consensus 91 ~~~~~~~~i~~-v~Q~~~l~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg 167 (267)
T 2zu0_C 91 PEDRAGEGIFM-AFQYPVEI--PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG 167 (267)
T ss_dssp HHHHHHHTEEE-ECSSCCCC--TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH
T ss_pred HHHHhhCCEEE-EccCcccc--ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence 11344 44332221 12455555443221 1 12111 11123466788888874 245665 5999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||||+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 210 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL 210 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998763
No 27
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.6e-34 Score=244.32 Aligned_cols=162 Identities=16% Similarity=0.135 Sum_probs=126.2
Q ss_pred eEEecCchheehhh--hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----C
Q 025293 77 VVEARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----P 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~--~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----~ 148 (255)
||+++||++.|++. .+. +|+|+||+|+ |++++|+||||||||||+|+|+|++ |++|+ .+++... .
T Consensus 1 ml~~~~l~~~y~~~~~~~~--il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~~~ 73 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERF--SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIRNY 73 (263)
T ss_dssp CEEEEEEEEEEEEETTEEE--EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCSCC
T ss_pred CEEEEEEEEEeCCCCccce--eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchHHh
Confidence 58999999999751 022 5699999999 9999999999999999999999997 89998 4444211 2
Q ss_pred CCeE-EEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhc
Q 025293 149 PDVA-TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 149 ~~~g-~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~ 224 (255)
..+| + +.++... .+++.+++.+..... ......+.++++.+++. .+.++..||||||||+++|++|+
T Consensus 74 ~~i~~~-v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 74 IRYSTN-LPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp TTEEEC-CGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred hheEEE-eCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 2345 4 4433221 356767766544322 22345677888888876 46778899999999999999999
Q ss_pred cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|++|||||||++||+..+..+.++|.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~ 174 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEY 174 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHS
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999998753
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.98 E-value=2.6e-33 Score=239.39 Aligned_cols=161 Identities=15% Similarity=0.125 Sum_probs=117.7
Q ss_pred eEEecCchhee-hhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----- 148 (255)
Q Consensus 77 ~l~v~~lsk~y-~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----- 148 (255)
-++++||++.| ++. +. +|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .+++... .
T Consensus 7 ~~~~~~l~~~y~~~~-~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~~ 80 (247)
T 2ff7_A 7 DITFRNIRFRYKPDS-PV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNW 80 (247)
T ss_dssp EEEEEEEEEESSTTS-CE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHH
T ss_pred ceeEEEEEEEeCCCC-cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence 47999999999 321 33 5599999999999999999999999999999999998 99999 4554321 1
Q ss_pred --CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCccc
Q 025293 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV 213 (255)
Q Consensus 149 --~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~ 213 (255)
..+|+ +.++... +. .++.+++.+. .. ......+..+++.+++. ...++..|||||
T Consensus 81 ~~~~i~~-v~Q~~~l-~~--~tv~enl~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 150 (247)
T 2ff7_A 81 LRRQVGV-VLQDNVL-LN--RSIIDNISLA-----NP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 150 (247)
T ss_dssp HHHHEEE-ECSSCCC-TT--SBHHHHHTTT-----CT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHH
T ss_pred HHhcEEE-EeCCCcc-cc--ccHHHHHhcc-----CC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHH
Confidence 12454 4443322 11 2444433221 11 12233444555554432 234567999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++|++|+.+|++|||||||++||+.++..+.++|.+
T Consensus 151 ~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 151 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 29
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.98 E-value=1.8e-33 Score=239.01 Aligned_cols=160 Identities=13% Similarity=0.113 Sum_probs=114.9
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
|.+|+++||++.|++..+. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++ .+|+
T Consensus 1 M~~l~~~~l~~~y~~~~~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g-----~i~~ 70 (237)
T 2cbz_A 1 MNSITVRNATFTWARSDPP--TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG-----SVAY 70 (237)
T ss_dssp -CCEEEEEEEEESCTTSCC--SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECS-----CEEE
T ss_pred CCeEEEEEEEEEeCCCCCc--eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC-----EEEE
Confidence 4579999999999731133 5599999999999999999999999999999999998 89998 4443 3555
Q ss_pred EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHH---HHhhccc-------CCccCCCCCcccccchhhhhhh
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLRNQ-------GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~l~~~-------~~~~~~~lS~G~kqrv~la~~l 223 (255)
+.++.. ++ ..++.+++.+.. ... .......... .+.++.. ...++..||||||||+++|++|
T Consensus 71 -v~Q~~~-~~--~~tv~enl~~~~---~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL 142 (237)
T 2cbz_A 71 -VPQQAW-IQ--NDSLRENILFGC---QLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 142 (237)
T ss_dssp -ECSSCC-CC--SEEHHHHHHTTS---CCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH
T ss_pred -EcCCCc-CC--CcCHHHHhhCcc---ccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 444432 11 134444433211 111 1111122221 2222221 2456789999999999999999
Q ss_pred ccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~~~l~~ll~ 252 (255)
+.+|++|||||||++||+.++..+.+++.
T Consensus 143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 143 YSNADIYLFDDPLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHTT
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 99999999999999999999999999873
No 30
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.98 E-value=4.5e-34 Score=247.23 Aligned_cols=167 Identities=17% Similarity=0.141 Sum_probs=120.0
Q ss_pred CeEEecCchheehhh-hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293 76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P---- 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~-~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~---- 148 (255)
.+|+++||++.|++. .+. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++... .
T Consensus 15 ~~l~~~~l~~~y~~~~~~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 89 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQ--VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDHH 89 (271)
T ss_dssp CCEEEEEEEECCTTCTTSC--CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHH
T ss_pred ceEEEEEEEEEeCCCCCce--eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCHH
Confidence 479999999999751 123 5699999999999999999999999999999999998 99999 4554321 1
Q ss_pred ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHH------HHHHHHHhh--ccc--CCccCCCCCcccc
Q 025293 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPL------LLLNCLKNL--RNQ--GSVYAPSFDHGVG 214 (255)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~------~~~~~l~~l--~~~--~~~~~~~lS~G~k 214 (255)
..+|+ +.++.. ++. .++.+++.+.. ..... .... .+.++++.+ ++. .+.++..|||||+
T Consensus 90 ~~~~~i~~-v~Q~~~-l~~--~tv~enl~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~ 162 (271)
T 2ixe_A 90 YLHTQVAA-VGQEPL-LFG--RSFRENIAYGL---TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQR 162 (271)
T ss_dssp HHHHHEEE-ECSSCC-CCS--SBHHHHHHTTC---SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHH
T ss_pred HHhccEEE-EecCCc-ccc--ccHHHHHhhhc---ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHH
Confidence 12454 444332 221 24444443211 00111 0000 123445554 332 4567889999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus 163 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 202 (271)
T 2ixe_A 163 QAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES 202 (271)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.98 E-value=5.5e-33 Score=236.85 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=118.8
Q ss_pred eEEecCchhee-hhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC--------
Q 025293 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------- 146 (255)
Q Consensus 77 ~l~v~~lsk~y-~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-------- 146 (255)
||+++||++.| ++ +. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++..
T Consensus 1 ml~~~~l~~~y~~~--~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 1 MLSARHVDFAYDDS--EQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp CEEEEEEEECSSSS--SC--SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred CEEEEEEEEEeCCC--Cc--eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence 48999999999 44 33 5599999999999999999999999999999999998 99999 444421
Q ss_pred CCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC-------------CccCCCCCccc
Q 025293 147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------------SVYAPSFDHGV 213 (255)
Q Consensus 147 ~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-------------~~~~~~lS~G~ 213 (255)
....+|+ +.++... +. .++.+++.+ +.........+..+++.+++.. ..++..|||||
T Consensus 74 ~~~~i~~-v~q~~~l-~~--~tv~enl~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 144 (243)
T 1mv5_A 74 WRSQIGF-VSQDSAI-MA--GTIRENLTY-----GLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ 144 (243)
T ss_dssp CTTTCCE-ECCSSCC-CC--EEHHHHTTS-----CTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred HHhhEEE-EcCCCcc-cc--ccHHHHHhh-----hccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence 1123555 4443321 11 133333221 1111223344566777666542 13456899999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++|++|+.+|++||+||||++||+.++..+.++|.+
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 184 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998865
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.97 E-value=1.2e-32 Score=235.50 Aligned_cols=157 Identities=19% Similarity=0.115 Sum_probs=120.4
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (255)
||+++||++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ |+ |+ .+++....
T Consensus 4 ~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 4 VMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp EEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHHH
T ss_pred EEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHHH
Confidence 7999999986 2 6699999999999999999999999999999999998 89 98 45443211
Q ss_pred -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~ 225 (255)
..+|+ +.++...+ ..+++.+++.+. .... .....+.++++.+++. .+.++..||||||||+++|++|+.
T Consensus 72 ~~~i~~-v~q~~~~~--~~~tv~e~l~~~----~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 143 (249)
T 2qi9_C 72 ALHRAY-LSQQQTPP--FATPVWHYLTLH----QHDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143 (249)
T ss_dssp HHHEEE-ECSCCCCC--TTCBHHHHHHTT----CSST-TCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred hceEEE-ECCCCccC--CCCcHHHHHHHh----hccC-CcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 12454 44433211 124554444321 1111 1245567888888875 467788999999999999999999
Q ss_pred CCc-------EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 226 QHK-------VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~-------illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|+ +|||||||++||+.++..+.++|.+
T Consensus 144 ~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~ 178 (249)
T 2qi9_C 144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178 (249)
T ss_dssp HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999 9999999999999999999999865
No 33
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.97 E-value=1.3e-32 Score=241.47 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=118.8
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (255)
..|+++||++.|++. +. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 52 ~~i~~~~vs~~y~~~-~~--vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~ 125 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RE--TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQAS 125 (306)
T ss_dssp CCEEEEEEEEESSTT-CE--EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHH
T ss_pred CeEEEEEEEEEcCCC-Cc--eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHH
Confidence 359999999999642 33 5699999999999999999999999999999999998 99999 45543221
Q ss_pred --CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCccc
Q 025293 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV 213 (255)
Q Consensus 149 --~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~ 213 (255)
..+|+ +.++...+ . .++.+++.+ +.. ......+..+++.+++. .......|||||
T Consensus 126 ~r~~i~~-v~Q~~~lf-~--~Tv~eNi~~-----~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGq 195 (306)
T 3nh6_A 126 LRSHIGV-VPQDTVLF-N--DTIADNIRY-----GRV-TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE 195 (306)
T ss_dssp HHHTEEE-ECSSCCCC-S--EEHHHHHHT-----TST-TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHH
T ss_pred HhcceEE-EecCCccC-c--ccHHHHHHh-----hcc-cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHH
Confidence 13565 55544322 1 244444332 211 12223333444433321 134456899999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||++|||||+.+|+||||||||++||+.+...+.+.|.+
T Consensus 196 rQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 196 KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235 (306)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998865
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.97 E-value=7.5e-32 Score=227.89 Aligned_cols=155 Identities=12% Similarity=0.131 Sum_probs=111.5
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (255)
.+|+++||++.|++..++ +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++ .+++
T Consensus 5 ~~l~~~~l~~~y~~~~~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~i~~- 73 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTP--VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF- 73 (229)
T ss_dssp EEEEEEEEEECSSTTSCC--SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----CEEE-
T ss_pred ceEEEEEEEEEeCCCCce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----EEEE-
Confidence 479999999999632133 5599999999999999999999999999999999998 99998 4443 3454
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCcccccchhhhh
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~kqrv~la~ 221 (255)
+.+.... +. .++.+++.+ +.. ........+++.+++. ...++..||||||||+++|+
T Consensus 74 v~q~~~~-~~--~tv~enl~~-----~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr 143 (229)
T 2pze_A 74 CSQFSWI-MP--GTIKENIIF-----GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 143 (229)
T ss_dssp ECSSCCC-CS--BCHHHHHHT-----TSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred EecCCcc-cC--CCHHHHhhc-----cCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 4443322 11 244443322 111 1111122222222211 12235799999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll 251 (255)
+|+.+|++||+||||++||+.++..+.+++
T Consensus 144 al~~~p~lllLDEPts~LD~~~~~~i~~~l 173 (229)
T 2pze_A 144 AVYKDADLYLLDSPFGYLDVLTEKEIFESC 173 (229)
T ss_dssp HHHSCCSEEEEESTTTTSCHHHHHHHHHHC
T ss_pred HHhcCCCEEEEECcccCCCHHHHHHHHHHH
Confidence 999999999999999999999999999863
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.97 E-value=2.2e-32 Score=235.30 Aligned_cols=164 Identities=13% Similarity=0.063 Sum_probs=117.6
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
.+|+++||++.|++.. ...+|+|+||+|++|++++|+||||||||||+|+|+|+++ | +|+ .+++...
T Consensus 16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence 4699999999997621 1125699999999999999999999999999999999995 5 788 4544211
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCccc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~ 213 (255)
...+|+ +.++... +. .++.+++.+ +.. ......+..+++.+++. ...++..|||||
T Consensus 91 ~~~~i~~-v~Q~~~l-~~--~tv~enl~~-----~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGq 160 (260)
T 2ghi_A 91 IRSIIGI-VPQDTIL-FN--ETIKYNILY-----GKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGE 160 (260)
T ss_dssp HHTTEEE-ECSSCCC-CS--EEHHHHHHT-----TCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHH
T ss_pred HhccEEE-EcCCCcc-cc--cCHHHHHhc-----cCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHH
Confidence 123555 4443322 11 244444322 111 11223344455444321 124567999999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||+++|++|+.+|++|||||||++||+..+..+.++|.+.
T Consensus 161 kqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 161 RQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998753
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.97 E-value=4e-32 Score=245.52 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=121.6
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (255)
...|+++||+|.|++..+. +|+|+||+|++||+++|+||||||||||||+|+|++ +++|+ .+++....
T Consensus 17 ~~~i~~~~l~~~y~~~~~~--~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNA--ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSITLE 90 (390)
T ss_dssp SCCEEEEEEEEESSSSSCC--SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSSCHH
T ss_pred CCeEEEEEEEEEecCCCeE--EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcCChH
Confidence 3579999999999432133 569999999999999999999999999999999998 67788 45543211
Q ss_pred ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCC-----------CCcc
Q 025293 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS-----------FDHG 212 (255)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~-----------lS~G 212 (255)
..+|. +.+++..+. .++.++ ..+........+.++++.+++. .++++.. ||||
T Consensus 91 ~~rr~ig~-v~Q~~~lf~---~tv~en-------l~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 91 QWRKAFGV-IPQKVFIFS---GTFRKN-------LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp HHHHTEEE-ESCCCCCCS---EEHHHH-------HCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred HHhCCEEE-EcCCcccCc---cCHHHH-------hhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 23555 454443221 233332 2222223345667788877765 3445555 9999
Q ss_pred cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||||+|||||+.+|++|||||||++||+..+.+++++|.+.
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~ 201 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.96 E-value=6.6e-30 Score=242.74 Aligned_cols=165 Identities=17% Similarity=0.130 Sum_probs=122.3
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (255)
.+|+++||+++|++..++ +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 340 ~~i~~~~v~~~y~~~~~~--~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKP--ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTN 414 (582)
T ss_pred CeEEEEEEEEEcCCCCcc--ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHH
Confidence 469999999999752123 5699999999999999999999999999999999998 99999 5555321
Q ss_pred -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCccc
Q 025293 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~ 213 (255)
+..+|+ +.++...+. .++.+++.+. .........+.++++.+++. .......|||||
T Consensus 415 ~~~~i~~-v~Q~~~l~~---~tv~eni~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 415 LRRHFAL-VSQNVHLFN---DTIANNIAYA-----AEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred HhcCeEE-EcCCCcccc---ccHHHHHhcc-----CCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 123555 555443221 2444444321 10122344555666655442 123457899999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||+++||+++.+|++||+||||++||+.+.+.+.+.+.+.
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988753
No 38
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.96 E-value=7.2e-30 Score=222.72 Aligned_cols=150 Identities=11% Similarity=0.137 Sum_probs=97.7
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (255)
.+|+++||++.+ +. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++ .+++
T Consensus 39 ~~l~~~~l~~~~----~~--vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~~- 103 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TP--VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF- 103 (290)
T ss_dssp -----------C----CC--SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEEE-
T ss_pred ceEEEEEEEEcC----ce--EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEEE-
Confidence 469999999864 22 5699999999999999999999999999999999998 89998 4443 3555
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCcccccchhhhh
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~kqrv~la~ 221 (255)
+.++... +. .++.+++. +... .......+++.+++. ...++..||||||||+++|+
T Consensus 104 v~Q~~~l-~~--~tv~enl~------~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAr 172 (290)
T 2bbs_A 104 CSQNSWI-MP--GTIKENII------GVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 172 (290)
T ss_dssp ECSSCCC-CS--SBHHHHHH------TTCC--CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHH
T ss_pred EeCCCcc-Cc--ccHHHHhh------Cccc--chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHH
Confidence 4443322 11 24444332 1111 111122222222221 12235799999999999999
Q ss_pred hhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll 251 (255)
+|+.+|++|||||||++||+..+..+.+++
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~i~~~l 202 (290)
T 2bbs_A 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESC 202 (290)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHC
T ss_pred HHHCCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 999999999999999999999999999863
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.96 E-value=6.1e-30 Score=242.95 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=122.3
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (255)
.+|+++||++.|++..++ +|+|+||+|++||++||+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 340 ~~i~~~~v~~~y~~~~~~--~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVP--ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLAS 414 (582)
T ss_dssp CCEEEEEEEECSSSSSCC--SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHH
T ss_pred CcEEEEEEEEEcCCCCCc--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHHH
Confidence 369999999999742123 5699999999999999999999999999999999998 99999 55553211
Q ss_pred --CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCccc
Q 025293 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV 213 (255)
Q Consensus 149 --~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~ 213 (255)
..+|+ +.++...+. .++.+++.+. .........+.++++.+++. .......|||||
T Consensus 415 ~~~~i~~-v~Q~~~l~~---~tv~eni~~~-----~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 415 LRNQVAL-VSQNVHLFN---DTVANNIAYA-----RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp HHHTEEE-ECSSCCCCS---SBHHHHHHTT-----TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred HHhhCeE-EccCCcCCC---CCHHHHHhcc-----CCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 13565 555443221 2444444321 10122344555666655442 123457899999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++||+++.+|++||+||||++||+.+.+.+.+.+.+
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998875
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.96 E-value=1e-29 Score=241.24 Aligned_cols=162 Identities=14% Similarity=0.101 Sum_probs=119.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++..++ +|+|+||+|++||++||+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 339 ~i~~~~v~~~y~~~~~~--~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CEEEEEEEECSCSSSCC--SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCCCc--ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence 59999999999753233 5599999999999999999999999999999999998 99998 4555321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~k 214 (255)
+..+|+ +.++...+. .++.+++.+ +.+ ......+.+.++..++. .......||||||
T Consensus 414 r~~i~~-v~Q~~~l~~---~tv~eni~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~ 483 (578)
T 4a82_A 414 RNQIGL-VQQDNILFS---DTVKENILL-----GRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 483 (578)
T ss_dssp HHTEEE-ECSSCCCCS---SBHHHHHGG-----GCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred hhheEE-EeCCCccCc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHH
Confidence 123565 555443221 244443322 211 22233444444443321 1234468999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+.+...+.+.+.+
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 522 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV 522 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.96 E-value=1.4e-29 Score=241.16 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=121.0
Q ss_pred EEecCchheehhh-hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293 78 VEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 78 l~v~~lsk~y~~~-~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (255)
|+++||++.|++. .++ +|+|+||+|++||++||+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 342 i~~~~v~~~y~~~~~~~--vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~ 416 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVP--IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNPVWL 416 (595)
T ss_dssp EEEEEEEEECSSCTTSE--EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC---CSEEEEEETTEETTTBCHHHH
T ss_pred EEEEEEEEEeCCCCCCc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCEEhhhCCHHHH
Confidence 9999999999752 123 5599999999999999999999999999999999998 99999 45553211
Q ss_pred -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCcccc
Q 025293 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG 214 (255)
Q Consensus 149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~k 214 (255)
..+|. +.++...+. .++.+++.+... .........+.++++.+++. .+ .....||||||
T Consensus 417 ~~~i~~-v~Q~~~l~~---~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~ 489 (595)
T 2yl4_A 417 RSKIGT-VSQEPILFS---CSIAENIAYGAD---DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQK 489 (595)
T ss_dssp HHSEEE-ECSSCCCCS---SBHHHHHHTTSS---STTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHH
T ss_pred HhceEE-EccCCcccC---CCHHHHHhhcCC---CccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHH
Confidence 13555 555443221 244444432110 00113345566666665532 12 23478999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|++||+||||++||+.+++.+.+.+.+
T Consensus 490 qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 528 (595)
T 2yl4_A 490 QRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 528 (595)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=2.1e-29 Score=239.45 Aligned_cols=162 Identities=18% Similarity=0.125 Sum_probs=117.5
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++..++ +|+|+||+|++||++||+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 341 ~i~~~~v~~~y~~~~~~--~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDP--VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp CEEEEEEEECSSSSSCC--SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHHH
T ss_pred cEEEEEEEEEcCCCCCc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHHH
Confidence 69999999999653234 5599999999999999999999999999999999998 99998 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------c----CCccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~lS~G~k 214 (255)
+..+++ +.++...+. .++.+++.+ +. .........+.++..++ + ...+...||||||
T Consensus 416 r~~i~~-v~Q~~~lf~---~tv~eni~~-----~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqr 485 (587)
T 3qf4_A 416 RGHISA-VPQETVLFS---GTIKENLKW-----GR-EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485 (587)
T ss_dssp HHHEEE-ECSSCCCCS---EEHHHHHTT-----TC-SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHH
T ss_pred HhheEE-ECCCCcCcC---ccHHHHHhc-----cC-CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHH
Confidence 123554 555443221 133332211 11 12223333333332221 1 2355678999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||++.+|++|||||||++||+.+.+.+.+.+.+
T Consensus 486 Qrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~ 524 (587)
T 3qf4_A 486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR 524 (587)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 43
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=7.7e-29 Score=232.84 Aligned_cols=162 Identities=14% Similarity=0.103 Sum_probs=120.4
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-CCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (255)
..+++++|+++.|++. .+.++||+|++||++||+||||||||||+|+|+|+++ |++|++ +.+ ..+++
T Consensus 267 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~----~~i~~ 334 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEK----QILSY 334 (538)
T ss_dssp CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSC----CCEEE
T ss_pred cceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC----eeeEe
Confidence 4589999999999862 3477899999999999999999999999999999998 999983 332 23444
Q ss_pred EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEE
Q 025293 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ill 231 (255)
+.+.-+.. ...++.++.... ..... ........++++.+++. .+.++..|||||||||+||++|+.+|++||
T Consensus 335 -~~q~~~~~--~~~tv~~~l~~~--~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLl 408 (538)
T 3ozx_A 335 -KPQRIFPN--YDGTVQQYLENA--SKDAL-STSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV 408 (538)
T ss_dssp -ECSSCCCC--CSSBHHHHHHHH--CSSTT-CTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred -echhcccc--cCCCHHHHHHHh--hhhcc-chhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 33322211 113444433221 11111 11223345666767665 467889999999999999999999999999
Q ss_pred EcCCCCCCChhHHHHHHHHHHhh
Q 025293 232 VDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 232 lDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||||++||+..+..+.++|.+.
T Consensus 409 LDEPT~gLD~~~~~~i~~~l~~l 431 (538)
T 3ozx_A 409 LDQPSSYLDVEERYIVAKAIKRV 431 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHH
T ss_pred EeCCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998753
No 44
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=1.7e-28 Score=233.37 Aligned_cols=160 Identities=16% Similarity=0.076 Sum_probs=122.2
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (255)
..+++++|+++.|++ . .|++++|+|++||++||+||||||||||+|+|+|+++ |++|++.. ...+|+
T Consensus 355 ~~~l~~~~l~~~~~~--~---~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~----~~~i~~- 421 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS--F---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEW----DLTVAY- 421 (607)
T ss_dssp CEEEEECCEEEECSS--C---EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCC----CCCEEE-
T ss_pred ceEEEEeceEEEecc--e---EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEE----eeEEEE-
Confidence 358999999999976 1 4589999999999999999999999999999999998 99998422 234565
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEE
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illl 232 (255)
+.++.... ..+++.+........ .. .....+.++++.+++. .++++..|||||+|||+||++|+.+|++|||
T Consensus 422 v~Q~~~~~--~~~tv~e~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlL 495 (607)
T 3bk7_A 422 KPQYIKAE--YEGTVYELLSKIDSS-KL---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLL 495 (607)
T ss_dssp ECSSCCCC--CSSBHHHHHHHHHHH-HH---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred EecCccCC--CCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 44433221 124554333222000 00 1123456778888775 4577889999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHh
Q 025293 233 DGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 233 Dep~~~LD~~~~~~l~~ll~~ 253 (255)
||||++||+.++..+.++|.+
T Consensus 496 DEPt~~LD~~~~~~l~~~l~~ 516 (607)
T 3bk7_A 496 DEPSAYLDVEQRLAVSRAIRH 516 (607)
T ss_dssp ECTTTTCCHHHHHHHHHHHHH
T ss_pred eCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999875
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=1.7e-28 Score=230.75 Aligned_cols=160 Identities=16% Similarity=0.068 Sum_probs=121.7
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (255)
..+++++|+++.|++ . .|+++||+|++||++||+||||||||||+|+|+|+++ |++|++.. ...+|+
T Consensus 285 ~~~l~~~~l~~~~~~--~---~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~----~~~i~~- 351 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS--F---RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEW----DLTVAY- 351 (538)
T ss_dssp CEEEEECCEEEEETT--E---EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCC----CCCEEE-
T ss_pred CeEEEEeeEEEEECC--E---EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE----CceEEE-
Confidence 458999999999976 1 4589999999999999999999999999999999998 99998432 234565
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEE
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illl 232 (255)
+.++.... ..+++.+........ ... ....+.++++.+++. .++++..|||||||||+||++|+.+|++|||
T Consensus 352 v~Q~~~~~--~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlL 425 (538)
T 1yqt_A 352 KPQYIKAD--YEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLL 425 (538)
T ss_dssp ECSSCCCC--CSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred EecCCcCC--CCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 44443221 123443332221000 011 123456677777764 4577889999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHh
Q 025293 233 DGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 233 Dep~~~LD~~~~~~l~~ll~~ 253 (255)
||||++||+.++..+.++|.+
T Consensus 426 DEPt~~LD~~~~~~i~~~l~~ 446 (538)
T 1yqt_A 426 DEPSAYLDVEQRLAVSRAIRH 446 (538)
T ss_dssp ECTTTTCCHHHHHHHHHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999875
No 46
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=5.6e-29 Score=236.96 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=116.2
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||++.|++. ++ +|+|+||+|++||++||+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 354 ~i~~~~v~~~y~~~-~~--~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 354 EIEFKNVWFSYDKK-KP--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CEEEEEEECCSSSS-SC--SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEECCCC-Cc--cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHHH
Confidence 58999999999752 23 5599999999999999999999999999999999998 99998 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------C----CccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~----~~~~~~lS~G~k 214 (255)
+...|. +.++...+. .++.+++.+ +.+ ......+.++++..++. . ......||||||
T Consensus 428 r~~i~~-v~Q~~~lf~---~tv~eni~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 428 RSSIGI-VLQDTILFS---TTVKENLKY-----GNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp HHHEEE-ECTTCCCCS---SBHHHHHHS-----SST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred HhceEE-EeCCCcccc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 113555 555443221 244443322 111 11122333333333221 1 122368999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|++||+||||++||+.+...+.+.+.+
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 536 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=4.6e-28 Score=230.41 Aligned_cols=163 Identities=14% Similarity=0.068 Sum_probs=114.0
Q ss_pred CeEEe--------cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc------
Q 025293 76 PVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------ 141 (255)
Q Consensus 76 ~~l~v--------~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~------ 141 (255)
.+|++ +||+++|++ +. ++++++| +|++||++||+||||||||||||+|+|+++ |++|+.
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~--~~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~ 154 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGV--NA-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDN 154 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECST--TC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHH
T ss_pred ceEEEecCCccccCCeEEEECC--CC-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccch
Confidence 46788 899999976 22 2569999 999999999999999999999999999998 999972
Q ss_pred ----CCCCCC----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCcc
Q 025293 142 ----FDSQVK----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVY 205 (255)
Q Consensus 142 ----~~~~~~----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~ 205 (255)
+.+... ....+. + ..+..+... .. ........... . ....+.++++.+++. .+++
T Consensus 155 ~~~~~~G~~~~~~~~~~~~~~~~i~~-~-~q~~~~~~~-~~-~~tv~e~l~~~---~--~~~~~~~~L~~lgL~~~~~~~ 225 (607)
T 3bk7_A 155 VIRAFRGNELQNYFERLKNGEIRPVV-K-PQYVDLLPK-AV-KGKVRELLKKV---D--EVGKFEEVVKELELENVLDRE 225 (607)
T ss_dssp HHHHTTTSTHHHHHHHHHHTSCCCEE-E-CSCGGGGGG-TC-CSBHHHHHHHT---C--CSSCHHHHHHHTTCTTGGGSB
T ss_pred hhheeCCEehhhhhhhhhhhhcceEE-e-echhhhchh-hc-cccHHHHhhhh---H--HHHHHHHHHHHcCCCchhCCC
Confidence 122110 011221 1 111110000 00 00111111111 0 112345677888775 4577
Q ss_pred CCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 206 ~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+..|||||+|||+||++|+.+|++|||||||++||+..+..+.++|.+.
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l 274 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999998753
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=7.8e-28 Score=226.26 Aligned_cols=161 Identities=16% Similarity=0.089 Sum_probs=110.4
Q ss_pred EEe-cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc----------CCCCC
Q 025293 78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----------FDSQV 146 (255)
Q Consensus 78 l~v-~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~----------~~~~~ 146 (255)
.++ +||+|.|++ +. ++++++| +|++||++||+||||||||||+|+|+|+++ |++|+. +.+..
T Consensus 21 ~~~~~~ls~~yg~--~~-~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~ 93 (538)
T 1yqt_A 21 EQLEEDCVHRYGV--NA-FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE 93 (538)
T ss_dssp ---CCCEEEECST--TC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred hhHhcCcEEEECC--cc-ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence 455 699999976 22 2569999 999999999999999999999999999998 999972 12211
Q ss_pred C----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccc
Q 025293 147 K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG 214 (255)
Q Consensus 147 ~----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~k 214 (255)
. ....+. +. ....+... ... ........... ....+.++++.+++. .+.++..||||||
T Consensus 94 ~~~~~~~~~~~~~~~~~-~~-q~~~~~~~-~~~-~~v~e~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGek 164 (538)
T 1yqt_A 94 LQNYFEKLKNGEIRPVV-KP-QYVDLIPK-AVK-GKVIELLKKAD-----ETGKLEEVVKALELENVLEREIQHLSGGEL 164 (538)
T ss_dssp HHHHHHHHHTTSCCCEE-EC-SCGGGSGG-GCC-SBHHHHHHHHC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHH
T ss_pred HHHHHHHHHHHhhhhhh-hh-hhhhhcch-hhh-ccHHHHHhhhh-----HHHHHHHHHHHcCCChhhhCChhhCCHHHH
Confidence 0 011222 11 11110000 000 01111111111 012355678888875 4577889999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||+||++|+.+|++|||||||++||+..+..+.++|.+.
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l 204 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL 204 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998653
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-26 Score=218.57 Aligned_cols=156 Identities=18% Similarity=0.210 Sum_probs=113.0
Q ss_pred cCchheehhhhcccccccccccccCCC-----cEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE
Q 025293 81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 81 ~~lsk~y~~~~~~il~l~~isl~i~~G-----eivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
.++++.|++.. . +++++||++.+| |++||+||||||||||+|+|+|+++ |++|+.+. ...+++ +
T Consensus 350 ~~~~~~y~~~~-~--~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~----~~~i~~-~ 418 (608)
T 3j16_B 350 ASRAFSYPSLK-K--TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIP----KLNVSM-K 418 (608)
T ss_dssp SSSCCEECCEE-E--ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCC----SCCEEE-E
T ss_pred cceeEEecCcc-c--ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCcc----CCcEEE-e
Confidence 67888887531 2 459999999998 7899999999999999999999998 99996221 223444 3
Q ss_pred ecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEc
Q 025293 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (255)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlD 233 (255)
.++..... ..++.++. .....+. ........++++.+++. .+.++..|||||+|||+||++|+.+|++||||
T Consensus 419 ~q~~~~~~--~~tv~e~~--~~~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 419 PQKIAPKF--PGTVRQLF--FKKIRGQ--FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp CSSCCCCC--CSBHHHHH--HHHCSST--TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred cccccccC--CccHHHHH--HHHhhcc--cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 33211111 12332211 1111111 11233455677777765 46788999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHh
Q 025293 234 GNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 234 ep~~~LD~~~~~~l~~ll~~ 253 (255)
|||++||+.++..+.++|.+
T Consensus 493 EPT~gLD~~~~~~i~~ll~~ 512 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRR 512 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998875
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.94 E-value=7.6e-28 Score=237.22 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=119.4
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
.++|+++||++.|++..++ +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+ .++++. .+|+
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~--iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~~---~I~y 740 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKP--QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHENC---RIAY 740 (986)
T ss_dssp SEEEEEEEEEECCTTCSSC--SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTTC---CEEE
T ss_pred CceEEEEeeEEEeCCCCce--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCcc---ceEe
Confidence 3589999999999752223 4599999999999999999999999999999999998 99998 343221 1222
Q ss_pred EEecCCC-----------------------CC---------------------------------------------C--
Q 025293 154 VLPMDGF-----------------------HL---------------------------------------------Y-- 163 (255)
Q Consensus 154 ~i~~~~~-----------------------~~---------------------------------------------~-- 163 (255)
+.+..+ .. +
T Consensus 741 -v~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 741 -IKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp -ECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred -eccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 111100 00 0
Q ss_pred --------------CccCCcccChH--------HHH-----------HhcCCCCCccHHHHHHHHHhhcccC----CccC
Q 025293 164 --------------LSQLDAMEDPK--------EAH-----------ARRGAPWTFNPLLLLNCLKNLRNQG----SVYA 206 (255)
Q Consensus 164 --------------~~~l~~~~~~~--------~~~-----------~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~ 206 (255)
...++..++.. ... ...+.........+.++++.+++.. +.++
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~ 899 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI 899 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCc
Confidence 00001101000 000 0112222223455678888888852 4678
Q ss_pred CCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 207 ~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
..||||||||++||++|+.+|++|||||||++||+.+...+.++|.+
T Consensus 900 ~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~ 946 (986)
T 2iw3_A 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946 (986)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998864
No 51
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.93 E-value=8.8e-27 Score=238.46 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=124.1
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
-|+++||+++|++.. ...+|+|+||+|++||++||+|+||||||||+++|.|++. |++|+ .+++...
T Consensus 1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence 599999999997532 1225599999999999999999999999999999999998 99999 5555322
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc---------CCcc----CCCCCccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGV 213 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---------~~~~----~~~lS~G~ 213 (255)
+...+. |.++.+.+.. ++.+|+. +|. +.+...+++.++++..++. .+.. ...|||||
T Consensus 1152 R~~i~~-V~Qdp~LF~g---TIreNI~-----~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQ 1222 (1321)
T 4f4c_A 1152 RSQIAI-VSQEPTLFDC---SIAENII-----YGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQ 1222 (1321)
T ss_dssp HTTEEE-ECSSCCCCSE---EHHHHHS-----SSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHH
T ss_pred HhheEE-ECCCCEeeCc---cHHHHHh-----ccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHH
Confidence 234565 6766654331 3323221 232 3344556666666655542 2322 35799999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|||++|||||+.+|+||||||||+.||+.+.+.+.+.|++.
T Consensus 1223 rQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~ 1263 (1321)
T 4f4c_A 1223 KQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA 1263 (1321)
T ss_dssp HHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888653
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.2e-26 Score=217.57 Aligned_cols=164 Identities=13% Similarity=0.075 Sum_probs=107.2
Q ss_pred CchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCC------------CC--
Q 025293 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ------------VK-- 147 (255)
Q Consensus 82 ~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~------------~~-- 147 (255)
|++++|+... +.+++++ .+++||++||+||||||||||||+|+|+++ |++|++.... ..
T Consensus 82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN 154 (608)
T ss_dssp TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence 5677776532 1345555 689999999999999999999999999998 9999742110 00
Q ss_pred ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l 219 (255)
.......+......... ........................+.++++.+++. .+.++..|||||+|||+|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIP--RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHH--HHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhh--hhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 00000000000000000 00000000001111111112334567788888876 467789999999999999
Q ss_pred hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
|++|+.+|++|||||||++||+..+..+.+++.+.
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l 267 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGG
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998764
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.93 E-value=7.8e-26 Score=230.94 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=118.7
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||++.|++... ..+|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+ .+++...
T Consensus 1030 ~i~~~~v~~~y~~~~~-~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPS-IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CEEEEEEEBCCSCGGG-CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred cEEEEEEEEECCCCCC-CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence 5999999999975311 125699999999999999999999999999999999998 99999 5555432
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc---------CC----ccCCCCCccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGV 213 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~ 213 (255)
+...+. +.++...+. .++.+|+.+ +.+ .......+.+.++..++. .+ .....|||||
T Consensus 1106 r~~i~~-v~Q~~~l~~---~ti~eNi~~-----~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq 1176 (1284)
T 3g5u_A 1106 RAQLGI-VSQEPILFD---CSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176 (1284)
T ss_dssp TTSCEE-EESSCCCCS---SBHHHHHTC-----CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHH
T ss_pred HhceEE-ECCCCcccc---ccHHHHHhc-----cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHH
Confidence 234565 666553221 233332211 111 112333444444433221 11 2345899999
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++||+|+.+|+||||||||++||+.+.+.+.+.+++
T Consensus 1177 ~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A 1177 KQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp HHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998865
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.93 E-value=2.8e-26 Score=234.22 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=117.7
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++.. ...+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence 589999999997531 1225699999999999999999999999999999999998 99998 4554321
Q ss_pred CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHH---------hhccc----CCccCCCCCcccc
Q 025293 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQ----GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~----~~~~~~~lS~G~k 214 (255)
+..+|. +.++...+. .++.+|+.+.. + ......+.+.++ .+..+ .......||||||
T Consensus 463 r~~i~~-v~Q~~~l~~---~ti~eNi~~g~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~ 532 (1284)
T 3g5u_A 463 REIIGV-VSQEPVLFA---TTIAENIRYGR-----E-DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK 532 (1284)
T ss_dssp HHHEEE-ECSSCCCCS---SCHHHHHHHHC-----S-SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHH
T ss_pred HhheEE-EcCCCccCC---ccHHHHHhcCC-----C-CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHH
Confidence 112555 555544322 25555544321 1 122233333332 22222 1234568999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||++|||||+.+|+||||||||++||+.+...+.+.++.
T Consensus 533 QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 571 (1284)
T 3g5u_A 533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571 (1284)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888754
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.92 E-value=7.2e-26 Score=223.20 Aligned_cols=156 Identities=13% Similarity=0.029 Sum_probs=111.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
.|...|+++.|++ +. +|+|+||+|++|+++||+||||||||||||+|+|-. . .|.... .....++ +.
T Consensus 435 ~L~~~~ls~~yg~--~~--iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~----i-~g~~~~---~~~~~~~-v~ 501 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KI--LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----V-DGFPTQ---EECRTVY-VE 501 (986)
T ss_dssp EEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC----S-TTCCCT---TTSCEEE-TT
T ss_pred eeEEeeEEEEECC--EE--eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----c-CCCccc---cceeEEE-Ec
Confidence 5666699999987 44 559999999999999999999999999999999621 1 121000 0111222 21
Q ss_pred cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcEEEEc
Q 025293 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (255)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~illlD 233 (255)
++ .......+++.+++.. .... . ...+.++++.+++. .++++..||||||||++||++|+.+|++||||
T Consensus 502 q~-~~~~~~~ltv~e~l~~-----~~~~-~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD 573 (986)
T 2iw3_A 502 HD-IDGTHSDTSVLDFVFE-----SGVG-T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD 573 (986)
T ss_dssp CC-CCCCCTTSBHHHHHHT-----TCSS-C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred cc-ccccccCCcHHHHHHH-----hhcC-H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 11 1011112343333221 1111 1 45677889999884 36778899999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHh
Q 025293 234 GNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 234 ep~~~LD~~~~~~l~~ll~~ 253 (255)
|||++||+.++..+.++|.+
T Consensus 574 EPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 574 EPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp STTTTCCHHHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHh
Confidence 99999999999999998864
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.92 E-value=1.6e-25 Score=229.21 Aligned_cols=163 Identities=16% Similarity=0.128 Sum_probs=119.6
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (255)
-|+++||+++|++.. ...+|+|+||+|++|+.++|+||+|||||||+++|.|++. |++|+ .+++...+
T Consensus 415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence 589999999997532 1225599999999999999999999999999999999998 99998 45553211
Q ss_pred -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------cCC----ccCCCCCcccc
Q 025293 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVG 214 (255)
Q Consensus 149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~lS~G~k 214 (255)
..+++ +.++.+.+. -++.+|+.+ |. ++...+++.++++..++ +.+ .....||||||
T Consensus 491 r~~i~~-v~Q~~~Lf~---~TI~eNI~~-----g~-~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk 560 (1321)
T 4f4c_A 491 RKNVAV-VSQEPALFN---CTIEENISL-----GK-EGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK 560 (1321)
T ss_dssp HHHEEE-ECSSCCCCS---EEHHHHHHT-----TC-TTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred hhcccc-cCCcceeeC---CchhHHHhh-----hc-ccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence 13555 666555432 243343322 22 22344555555554332 222 23457999999
Q ss_pred cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
||++||||+..+|+||||||||++||+.+...+.+.|+.
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~ 599 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK 599 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888887764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=4.3e-25 Score=212.79 Aligned_cols=155 Identities=15% Similarity=0.082 Sum_probs=89.5
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHH---------------------HHHHHHhcccCCCCCccC--------CCCC
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKASSF--------DSQV 146 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLL---------------------k~L~Gll~~~~p~~G~~~--------~~~~ 146 (255)
+|+||||+|++||++||+||||||||||+ +++.|+.. |+.|.+. .+..
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCCEEEESSCC
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCccceeccccceEecCch
Confidence 66999999999999999999999999998 88888876 7755411 1110
Q ss_pred C----CCCeEEEEecCCCC----------------C-CCccCCcccChHHHHHhc--CCCCCc------cHHHHHHHHHh
Q 025293 147 K----PPDVATVLPMDGFH----------------L-YLSQLDAMEDPKEAHARR--GAPWTF------NPLLLLNCLKN 197 (255)
Q Consensus 147 ~----~~~~g~~i~~~~~~----------------~-~~~~l~~~~~~~~~~~~~--~~~~~~------~~~~~~~~l~~ 197 (255)
. ...+|. +...... . ....+++.++..+..... ...... .......+++.
T Consensus 110 ~~~~~~~~ig~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGT-VTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHH-HTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhccchhceee-eechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 0 001111 0000000 0 001123334333211100 000000 00112234677
Q ss_pred hccc---CCccCCCCCcccccchhhhhhhccCCc--EEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 198 LRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 198 l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~--illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+++. .++++..|||||||||+||++|+.+|+ +|||||||++||+..+..+.++|.+.
T Consensus 189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l 250 (670)
T 3ux8_A 189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM 250 (670)
T ss_dssp TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 7765 467889999999999999999999988 99999999999999999999998753
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.91 E-value=8.9e-25 Score=205.25 Aligned_cols=159 Identities=14% Similarity=0.055 Sum_probs=104.3
Q ss_pred cCchheehhhhccccccccccccc-CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc------------CCCCCC
Q 025293 81 RCMDEVYDALAQRLLPTSALASNV-NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVK 147 (255)
Q Consensus 81 ~~lsk~y~~~~~~il~l~~isl~i-~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~------------~~~~~~ 147 (255)
++.+.+||.+. ++-..+.+ ++||++||+||||||||||+|+|+|+++ |++|++ +.+...
T Consensus 3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeH
Confidence 35678898743 23344554 4899999999999999999999999998 999974 111110
Q ss_pred --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccch
Q 025293 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv 217 (255)
....+.........+. ..+.. ........... . .....++++.+++. .++++..|||||+|||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~v~~~l~~~~--~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv 147 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYA-SKFLK-GTVNEILTKID--E---RGKKDEVKELLNMTNLWNKDANILSGGGLQRL 147 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGG-GTTCC-SBHHHHHHHHC--C---SSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHH
T ss_pred HHHHHHHhhcccchhhccchhhhh-hhhcc-CcHHHHhhcch--h---HHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 0111111111111110 00000 01111111110 0 11244667777765 4677889999999999
Q ss_pred hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||++|+.+|++|||||||++||+..+..+.++|.+.
T Consensus 148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l 184 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL 184 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998764
No 59
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=4.2e-25 Score=194.54 Aligned_cols=143 Identities=21% Similarity=0.285 Sum_probs=106.6
Q ss_pred CeEEecCchheehhhhcccccccccccc-----------------------cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~-----------------------i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+|++++|++.|+. +++++++. +++|+++||+||||||||||+++|+|+++
T Consensus 42 ~~i~~~~v~~~y~p------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 42 EQIDLLEVEEVYLP------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEeeehhhhhhh------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 46899999999964 33555543 89999999999999999999999999997
Q ss_pred ccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC-CccCCCCCc
Q 025293 133 KIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDH 211 (255)
Q Consensus 133 ~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lS~ 211 (255)
|+.| ...++. +.++++.... ++.++.... ..++.+...+...+.++++.++.+. +.+++.||+
T Consensus 116 ---~~~G--------~~~v~~-v~qd~~~~~~---t~~e~~~~~-~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~ 179 (312)
T 3aez_A 116 ---RWDH--------HPRVDL-VTTDGFLYPN---AELQRRNLM-HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSH 179 (312)
T ss_dssp ---TSTT--------CCCEEE-EEGGGGBCCH---HHHHHTTCT-TCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEET
T ss_pred ---ccCC--------CCeEEE-EecCccCCcc---cHHHHHHHH-HhcCCChHHHHHHHHHHHHHhCCCcccCCcccCCh
Confidence 7766 345665 7777764331 222221110 0123344455566777888877333 367889999
Q ss_pred ccccchhhhhhhccCCcEEEEcCCCCCCC
Q 025293 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (255)
Q Consensus 212 G~kqrv~la~~l~~~~~illlDep~~~LD 240 (255)
||+||+++|++++.+|+|||+|||++.+|
T Consensus 180 G~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 180 LHYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp TTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred hhhhhhhhHHHhccCCCEEEECCccccCC
Confidence 99999999999999999999999999987
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.87 E-value=8.8e-23 Score=196.67 Aligned_cols=64 Identities=13% Similarity=0.006 Sum_probs=53.7
Q ss_pred HHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCC---cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~---~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
..+.+..+++. .+.++..|||||||||+||++|+.+| ++||+||||++||+..+..+.++|.+.
T Consensus 523 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l 592 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL 592 (670)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 34555666654 35678899999999999999998876 599999999999999999999998753
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.2e-25 Score=207.51 Aligned_cols=159 Identities=14% Similarity=0.028 Sum_probs=105.5
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC-c-c-CCCCCCCCCe
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-S-FDSQVKPPDV 151 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G-~-~-~~~~~~~~~~ 151 (255)
.++++++||++.|+ ++||++++|++++|+||||||||||+|+|+|++. |++| + + ++++. ....
T Consensus 116 ~~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~~-~~~i 181 (460)
T 2npi_A 116 HTMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLDP-QQPI 181 (460)
T ss_dssp CTHHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECCT-TSCS
T ss_pred cchhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCCc-cCCe
Confidence 45788889988885 5789999999999999999999999999999998 8899 6 3 33322 1122
Q ss_pred EEEEecCCCC-CCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhh--hccCC
Q 025293 152 ATVLPMDGFH-LYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQH 227 (255)
Q Consensus 152 g~~i~~~~~~-~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~--l~~~~ 227 (255)
+. +...... .....+++.++. +.... .+. ........+++.+++.....+..|||||+||+++|++ |+.+|
T Consensus 182 ~~-vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p 256 (460)
T 2npi_A 182 FT-VPGCISATPISDILDAQLPT-WGQSLTSGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDP 256 (460)
T ss_dssp SS-CSSCCEEEECCSCCCTTCTT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ee-eccchhhcccccccchhhhh-cccccccCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCc
Confidence 22 2111100 000112333332 11100 010 0011122344455554333367899999999999999 99999
Q ss_pred cE----EEEcC-CCCCCChhHHHHHHHHHHh
Q 025293 228 KV----VIVDG-NYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~i----lllDe-p~~~LD~~~~~~l~~ll~~ 253 (255)
++ ||+|| ||++||+. ...+.+++++
T Consensus 257 ~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~ 286 (460)
T 2npi_A 257 QVRRSGCIVDTPSISQLDEN-LAELHHIIEK 286 (460)
T ss_dssp HHHHSCEEEECCCGGGSCSS-CHHHHHHHHH
T ss_pred ccCcceEEEeCCcccccChh-HHHHHHHHHH
Confidence 99 99999 99999998 7777777654
No 62
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.86 E-value=4.6e-23 Score=171.47 Aligned_cols=127 Identities=17% Similarity=0.092 Sum_probs=80.9
Q ss_pred heehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCC------CCCCeEEEEecC
Q 025293 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV------KPPDVATVLPMD 158 (255)
Q Consensus 85 k~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~------~~~~~g~~i~~~ 158 (255)
|+|++.. +|+|+ ++|++++|+||||||||||+++|+|+ + |++|++..... ....+|+ +.++
T Consensus 8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~-v~q~ 74 (208)
T 3b85_A 8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGF-LPGT 74 (208)
T ss_dssp CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCS-SCC-
T ss_pred CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEE-ecCC
Confidence 5676633 55885 79999999999999999999999999 8 99997421000 0011111 1110
Q ss_pred CCCCCCccCCcccCh-HH----HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEc
Q 025293 159 GFHLYLSQLDAMEDP-KE----AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (255)
Q Consensus 159 ~~~~~~~~l~~~~~~-~~----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlD 233 (255)
. .+++ .+ ....... .....+.++++. + .||+||+++|++|+.+|++||||
T Consensus 75 ~----------~enl~~~~~~~~~~~~~~---~~~~~~~~~l~~-g-----------lGq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 75 L----------NEKIDPYLRPLHDALRDM---VEPEVIPKLMEA-G-----------IVEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp ---------------CTTTHHHHHHHTTT---SCTTHHHHHHHT-T-----------SEEEEEGGGGTTCCBCSEEEEEC
T ss_pred H----------HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHh-C-----------CchHHHHHHHHHHhcCCCEEEEe
Confidence 0 1111 01 0011110 111223344443 2 19999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHh
Q 025293 234 GNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 234 ep~~~LD~~~~~~l~~ll~~ 253 (255)
|||++ ++..+.++|.+
T Consensus 130 EPts~----~~~~l~~~l~~ 145 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTR 145 (208)
T ss_dssp SGGGC----CHHHHHHHHTT
T ss_pred CCccc----cHHHHHHHHHH
Confidence 99999 78888888764
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.84 E-value=3e-21 Score=188.54 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=56.6
Q ss_pred HHHHHHHhhcccC---CccCCCCCcccccchhhhhhhccC---CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 190 LLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 190 ~~~~~l~~l~~~~---~~~~~~lS~G~kqrv~la~~l~~~---~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
...++++.+++.. ..++..|||||+|||+||++|+.+ |+||||||||++||+..+..+.++|++.
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 779 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL 779 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 3456777887753 567889999999999999999996 7999999999999999999999998753
No 64
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.83 E-value=1.5e-21 Score=157.17 Aligned_cols=105 Identities=12% Similarity=0.027 Sum_probs=67.8
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHH------------HHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCcc
Q 025293 99 ALASNVNVKHIVGLAGPPGAGKSTLAAE------------VVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166 (255)
Q Consensus 99 ~isl~i~~GeivgLiGpNGsGKSTLLk~------------L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~ 166 (255)
|+||++++||+++|+||||||||||+|+ +.|++. ++.| . ..+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~---~~~~-------------~-~~~~-------- 55 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMS---DDEN-------------D-QTVT-------- 55 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHC---SSTT-------------C-GGGH--------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhc---Cccc-------------c-hhhH--------
Confidence 6899999999999999999999999994 444442 1111 0 0000
Q ss_pred CCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhH
Q 025293 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 243 (255)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~ 243 (255)
. ...... .......+ ..+.. ........|+|++||+++|++++.+|++|++||||++||+.+
T Consensus 56 ----~--~~~~~~--------~~~~~~~~-~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~ 118 (171)
T 4gp7_A 56 ----G--AAFDVL--------HYIVSKRL-QLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERN 118 (171)
T ss_dssp ----H--HHHHHH--------HHHHHHHH-HTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHH
T ss_pred ----H--HHHHHH--------HHHHHHHH-hCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHH
Confidence 0 000000 00011111 11211 112234569999999999999999999999999999999983
No 65
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.83 E-value=7.3e-23 Score=186.10 Aligned_cols=141 Identities=8% Similarity=-0.060 Sum_probs=101.6
Q ss_pred cccccccccCCCc--------------------EEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293 96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (255)
Q Consensus 96 ~l~~isl~i~~Ge--------------------ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (255)
+++++||+|++|+ ++||+||||||||||+|+|+|+.+ |++|+ .+++.... ..+.
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t-~~~~- 112 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVT-MERH- 112 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC-----CCCE-
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeecc-eeEE-
Confidence 5699999999999 999999999999999999999998 99998 44443211 1244
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcc--cccchhhhhhhcc-------
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHG--VGDPVEDDILVGL------- 225 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G--~kqrv~la~~l~~------- 225 (255)
+...... ..+++.+++.+.. . . ..+.++++.+++........+|+| |+||+.+|++|..
T Consensus 113 v~q~~~~---~~ltv~D~~g~~~-----~-~---~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 113 PYKHPNI---PNVVFWDLPGIGS-----T-N---FPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp EEECSSC---TTEEEEECCCGGG-----S-S---CCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ecccccc---CCeeehHhhcccc-----h-H---HHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 3332211 1234444432210 1 1 124566777766542222239999 9999999999999
Q ss_pred ---CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 226 ---QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ---~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|+++++||||++||+..+.++.+++.+
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~ 211 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRL 211 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999888765
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.83 E-value=1.9e-20 Score=183.73 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=55.4
Q ss_pred HHHHHHhhcccC---CccCCCCCcccccchhhhhhhccCC---cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 191 LLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 191 ~~~~l~~l~~~~---~~~~~~lS~G~kqrv~la~~l~~~~---~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
..++++.+++.. ..++..|||||+|||++|++|+.+| ++|||||||++||+..+..++++|.+.
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 894 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL 894 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 356777787753 5678899999999999999999764 999999999999999999999998753
No 67
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.82 E-value=3.5e-20 Score=182.39 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=55.1
Q ss_pred HHHHHHhhcccC---CccCCCCCcccccchhhhhhhccCC---cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 191 LLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 191 ~~~~l~~l~~~~---~~~~~~lS~G~kqrv~la~~l~~~~---~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
..++++.+++.. ..++..|||||+|||++|++|+.+| ++|||||||++||+..+..+.++|.+.
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 912 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGL 912 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 346777777753 5678899999999999999999764 999999999999999999999998753
No 68
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=1.4e-20 Score=185.34 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=56.2
Q ss_pred HHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCC---cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 190 ~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~---~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
...++++.+++. ...++..|||||+|||+||++|+.+| +||||||||++||+..++.+.++|++.
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L 854 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL 854 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 456778888875 35678899999999999999998765 799999999999999999999998753
No 69
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.81 E-value=1.2e-21 Score=171.59 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=88.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
+|+++||++.|+ .. +|+++||+|++|++++|+||||||||||+++|+|++. | .++.
T Consensus 101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~------G-------------~I~~ 156 (305)
T 2v9p_A 101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG------G-------------SVLS 156 (305)
T ss_dssp HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHT------C-------------EEEC
T ss_pred eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcC------c-------------eEEE
Confidence 588999999997 22 5699999999999999999999999999999999972 3 2221
Q ss_pred cCCC--CCCCccCCccc-ChHHHHHhcCCCCCccHHHHHHHHHh-hcccCCccCCCCCcccccchhhhhhhccCCcEEEE
Q 025293 157 MDGF--HLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (255)
Q Consensus 157 ~~~~--~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illl 232 (255)
.... .++. .+..+ ++ .+..... ....+.++. +....+ ...|||||||| ||+++.+|+|||
T Consensus 157 ~v~q~~~lf~--~ti~~~ni-------~~~~~~~-~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl- 220 (305)
T 2v9p_A 157 FANHKSHFWL--ASLADTRA-------ALVDDAT-HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV- 220 (305)
T ss_dssp GGGTTSGGGG--GGGTTCSC-------EEEEEEC-HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE-
T ss_pred EecCcccccc--ccHHHHhh-------ccCcccc-HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE-
Confidence 1110 0010 01111 11 1111111 133444554 222222 67899999999 899999999999
Q ss_pred cCCCCCCChhHHHHHH
Q 025293 233 DGNYLFLDGGVWKDVS 248 (255)
Q Consensus 233 Dep~~~LD~~~~~~l~ 248 (255)
|++||+.....+.
T Consensus 221 ---Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 221 ---TSNIDVQAEDRYL 233 (305)
T ss_dssp ---EESSCSTTCGGGG
T ss_pred ---ECCCCHHHHHHHH
Confidence 9999998776654
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.79 E-value=3e-20 Score=168.95 Aligned_cols=46 Identities=15% Similarity=0.001 Sum_probs=43.8
Q ss_pred CCcccccchhhhhhhccCC--cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 209 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 209 lS~G~kqrv~la~~l~~~~--~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+||||+||+++|++|+.+| ++|||||||++||+..+..+.++|.+.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l 343 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL 343 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999999 999999999999999999999998763
No 71
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.78 E-value=1.8e-19 Score=153.00 Aligned_cols=132 Identities=23% Similarity=0.336 Sum_probs=81.6
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEecCCCCCCCccCCcccChH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~ 174 (255)
+|+|+||++++|+++||+||||||||||+++|+|++. . .++ . ....++. +..+.++. .++..++..
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~-~-~~~~i~~-v~~d~~~~---~l~~~~~~~ 80 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE-Q-RQRKVVI-LSQDRFYK---VLTAEQKAK 80 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC-G-GGCSEEE-EEGGGGBC---CCCHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc-c-cCCceEE-EeCCcCcc---ccCHhHhhh
Confidence 5699999999999999999999999999999999872 1 111 0 0123444 55554321 134333322
Q ss_pred HHHHhcCC--CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293 175 EAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 175 ~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~ 241 (255)
.....+.+ +...+...+.+.++.+.-....+++.||+||+||+.+ ++++.+|+++|+|||+...|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 81 ALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp HHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred hhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence 22111222 1223344556666666555677889999999999987 577789999999999988775
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.76 E-value=5.5e-21 Score=155.17 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=46.2
Q ss_pred CccCCCCCcccccchhhhhh-----hccCCcEEEEcC--CCCCCChhHHHHHHHHHHh
Q 025293 203 SVYAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 203 ~~~~~~lS~G~kqrv~la~~-----l~~~~~illlDe--p~~~LD~~~~~~l~~ll~~ 253 (255)
..++..||+||+||+++|++ ++.+|+++|+|| |+++||+..++.+.+++++
T Consensus 71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 45567899999999999996 999999999999 9999999999999998754
No 73
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.71 E-value=1.1e-17 Score=150.11 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=47.1
Q ss_pred ccCCCCCcccccchhhhhhhc------cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 204 VYAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 204 ~~~~~lS~G~kqrv~la~~l~------~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.++..|||||+||+++|++|+ .+|++|||||||++||+..+..+.++|.+.
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l 331 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL 331 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGG
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 467789999999999999998 799999999999999999999999998764
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.71 E-value=8.9e-18 Score=148.23 Aligned_cols=51 Identities=14% Similarity=0.033 Sum_probs=45.8
Q ss_pred ccCCCCCcccccchhhhhhhc----cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 204 VYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 204 ~~~~~lS~G~kqrv~la~~l~----~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
..+..||+||+||+++|++|+ .+|++||+||||++||+..+..+.+++.+.
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 269 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN 269 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 346689999999999999996 578999999999999999999999998653
No 75
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.70 E-value=2.9e-19 Score=149.34 Aligned_cols=140 Identities=9% Similarity=0.026 Sum_probs=77.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--CCCeEEEEecCCCCCCCccCCcccC
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--PPDVATVLPMDGFHLYLSQLDAMED 172 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--~~~~g~~i~~~~~~~~~~~l~~~~~ 172 (255)
.|+||||+|++|++++|+||||||||||+++|+|++ | |+ .++.... .+..+. .++..+ ...+
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~g~~~~~~~~~~~~---~~~i~~------~~~~ 76 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYFSVSCTTRKKREKE---KEGVDY------YFID 76 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEECCCEECSCCCSSC---CBTTTB------EECC
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEEeecccCCCCCccc---ccCCeE------EECC
Confidence 459999999999999999999999999999999987 6 65 2221100 000000 000000 0011
Q ss_pred hHHHHHhc---C------CCC---CccHHHHHHHHHhhcccCCccCCCCCcccccchhh-----hhhhccCCcEEEEcCC
Q 025293 173 PKEAHARR---G------APW---TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED-----DILVGLQHKVVIVDGN 235 (255)
Q Consensus 173 ~~~~~~~~---~------~~~---~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~l-----a~~l~~~~~illlDep 235 (255)
...+.... . +.. ......+.++++..... .....+||||+||+++ +++++..|++++||||
T Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~ 154 (218)
T 1z6g_A 77 KTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR 154 (218)
T ss_dssp HHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH
T ss_pred HHHHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH
Confidence 11111100 0 000 01122344555543321 1114679999999999 8899999999999999
Q ss_pred CCCCChhHHHHHHHHHH
Q 025293 236 YLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 236 ~~~LD~~~~~~l~~ll~ 252 (255)
++.+|......+.+.+.
T Consensus 155 ~~~~d~~~~~~i~~~l~ 171 (218)
T 1z6g_A 155 LLTRNTENQEQIQKRME 171 (218)
T ss_dssp HHHTCCCCHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHH
Confidence 99999887777766654
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.69 E-value=3.9e-18 Score=147.11 Aligned_cols=127 Identities=12% Similarity=0.033 Sum_probs=70.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 182 (255)
.++|+||||||||||+|+|+|+.. |++|+ .+++... ....+. +.+... . ...+++.+++.+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~-v~q~~~-~-~~~ltv~d~~~~g~~~~-- 75 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGH-VIEEGG-V-KMKLTVIDTPGFGDQIN-- 75 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEE-SCC------CCEEEEECCCC--CCSB--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEE-EeecCC-C-cCCceEEechhhhhhcc--
Confidence 589999999999999999999998 99998 3433211 122333 222211 1 11245555554432111
Q ss_pred CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293 183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ 249 (255)
.......+..+++. -..+.....||+||+||+++|++++. ++++|||+.+||+...+.+..
T Consensus 76 -~~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~ 136 (270)
T 3sop_A 76 -NENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKH 136 (270)
T ss_dssp -CTTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHH
Confidence 11111222222220 11223456899999999999999864 999999999999977544443
No 77
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.68 E-value=5.1e-18 Score=148.63 Aligned_cols=124 Identities=10% Similarity=0.011 Sum_probs=75.7
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHH
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~ 177 (255)
..+||++++|++++|+||||||||||+++|+|+++ |++|+ +.+.+.+.+.. ...+......
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~--------------V~l~g~d~~r~--~a~~ql~~~~ 151 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTK--------------VLMAAGDTFRA--AASDQLEIWA 151 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC--------------EEEECCCCSCH--HHHHHHHHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCe--------------EEEEeecccch--hHHHHHHHHH
Confidence 67899999999999999999999999999999997 77774 22222221100 0000001111
Q ss_pred --HhcCC-CCCcc-HHHHHHHHHhh----------------ccc--CCccCCCCCcccccchhhhhhhccCCc--EEEEc
Q 025293 178 --ARRGA-PWTFN-PLLLLNCLKNL----------------RNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVD 233 (255)
Q Consensus 178 --~~~~~-~~~~~-~~~~~~~l~~l----------------~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~--illlD 233 (255)
...++ ++... ......+.+++ ++. .+.++..|| +||+++|++++.+|+ +|++|
T Consensus 152 ~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 152 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp HHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred HhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 11111 22111 11111222221 111 112334567 899999999999999 99999
Q ss_pred CCCCCCChhHH
Q 025293 234 GNYLFLDGGVW 244 (255)
Q Consensus 234 ep~~~LD~~~~ 244 (255)
||++||+..+
T Consensus 229 -ptsglD~~~~ 238 (302)
T 3b9q_A 229 -GNTGLNMLPQ 238 (302)
T ss_dssp -GGGGGGGHHH
T ss_pred -CCCCcCHHHH
Confidence 9999998754
No 78
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.65 E-value=1.8e-17 Score=146.94 Aligned_cols=92 Identities=11% Similarity=0.112 Sum_probs=68.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 175 (255)
++++++|.+++|++++|+||||||||||+++|+|+++ |++| . +.+++..... +....
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g-------------~-i~i~~~~e~~--~~~~~---- 216 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEER-------------I-ISIEDTEEIV--FKHHK---- 216 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSC-------------E-EEEESSCCCC--CSSCS----
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCc-------------E-EEECCeeccc--cccch----
Confidence 4599999999999999999999999999999999996 6555 3 4444432100 00000
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCC
Q 025293 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (255)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~ 237 (255)
...++ .. .+||+||++++++|..+|+++|+|||++
T Consensus 217 --~~i~~------------------~~-------ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 217 --NYTQL------------------FF-------GGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp --SEEEE------------------EC-------BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred --hEEEE------------------Ee-------CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 00000 00 1899999999999999999999999998
No 79
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.65 E-value=9.6e-18 Score=138.60 Aligned_cols=130 Identities=23% Similarity=0.260 Sum_probs=86.1
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 183 (255)
.++|+++||+||||||||||+++|+|++. +..+. +..+.+......++..++ ....++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~----------------~~i~~-v~~d~~~~~~~~~~~~~~---~~~~~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG----------------ERVAL-LPMDHYYKDLGHLPLEER---LRVNYDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG----------------GGEEE-EEGGGCBCCCTTSCHHHH---HHSCTTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC----------------CCeEE-EecCccccCcccccHHHh---cCCCCCCh
Confidence 56899999999999999999999999983 23444 666665432222222111 11111222
Q ss_pred CCccHHHHHHHHHhhcccC--CccCCCCCcccc----cchhhhhhhccCCcEEEEcCCCCC-------CChhHHHHHHHH
Q 025293 184 WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVG----DPVEDDILVGLQHKVVIVDGNYLF-------LDGGVWKDVSSM 250 (255)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~k----qrv~la~~l~~~~~illlDep~~~-------LD~~~~~~l~~l 250 (255)
...+...+.+.++.++... ..+...+|+|++ ||++++++++.++.++++|||+.+ ||++...++...
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 2334455666677666543 234556788864 688888888889999999999988 898888877776
Q ss_pred HHh
Q 025293 251 FDE 253 (255)
Q Consensus 251 l~~ 253 (255)
+.+
T Consensus 143 l~r 145 (211)
T 3asz_A 143 LKR 145 (211)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 80
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.64 E-value=2.7e-17 Score=146.97 Aligned_cols=125 Identities=10% Similarity=0.010 Sum_probs=76.1
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHH
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~ 177 (255)
..+||++++|++++|+||||||||||+++|+|+++ |++|+ +.+.+.+.+.. ...+......
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~--------------V~l~g~D~~r~--~a~eql~~~~ 208 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTK--------------VLMAAGDTFRA--AASDQLEIWA 208 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC--------------EEEECCCCSCH--HHHHHHHHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCE--------------EEEeccccccc--chhHHHHHHH
Confidence 46899999999999999999999999999999997 77664 22222221100 0000001110
Q ss_pred --HhcCC-CCCcc-HHHHHHHHHhh----------------ccc--CCccCCCCCcccccchhhhhhhccCCc--EEEEc
Q 025293 178 --ARRGA-PWTFN-PLLLLNCLKNL----------------RNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVD 233 (255)
Q Consensus 178 --~~~~~-~~~~~-~~~~~~~l~~l----------------~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~--illlD 233 (255)
...++ ++... ......+.+++ ++. .+.++..|| +||+++|++++.+|+ +|++|
T Consensus 209 ~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 209 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred HhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 11111 22211 11111222221 111 112334567 899999999999999 99999
Q ss_pred CCCCCCChhHHH
Q 025293 234 GNYLFLDGGVWK 245 (255)
Q Consensus 234 ep~~~LD~~~~~ 245 (255)
||++||+..+.
T Consensus 286 -pttglD~~~~~ 296 (359)
T 2og2_A 286 -GNTGLNMLPQA 296 (359)
T ss_dssp -GGGGGGGHHHH
T ss_pred -CCCCCCHHHHH
Confidence 99999987653
No 81
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.64 E-value=5.2e-17 Score=133.47 Aligned_cols=168 Identities=11% Similarity=0.015 Sum_probs=88.5
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh-----cccCCCCCccCC-CCCCCC
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFD-SQVKPP 149 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll-----~~~~p~~G~~~~-~~~~~~ 149 (255)
.+|+++|+++.|+. . ++++ |.+.+|.+++|+|+||||||||++.|+|.. . |+.|+... +.....
T Consensus 2 ~~l~~~~~~~~~~~---~--~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~---~~~G~~~~~~~~~~~ 71 (210)
T 1pui_A 2 TNLNYQQTHFVMSA---P--DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGRTQLINLFEVA 71 (210)
T ss_dssp ---------CEEEE---S--SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEE
T ss_pred cchhhhhhhheeec---C--CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc---CCCccceeeEEEEec
Confidence 36899999999973 2 4477 899999999999999999999999999976 4 66675211 000000
Q ss_pred CeEEEEecCCCCCCCccCCccc----ChHHHHHh-cC---------C--CCCccHHHHHHHHHhhccc---CCccCCCCC
Q 025293 150 DVATVLPMDGFHLYLSQLDAME----DPKEAHAR-RG---------A--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 210 (255)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~~----~~~~~~~~-~~---------~--~~~~~~~~~~~~l~~l~~~---~~~~~~~lS 210 (255)
..-.++...|+..........+ ........ .. . ........+..++...+.. ...+...+|
T Consensus 72 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 72 DGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp TTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 0001112222211000000000 00011110 00 0 0111112334444444433 134456789
Q ss_pred cccccc-hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 211 HGVGDP-VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 211 ~G~kqr-v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|+ +..+++++.++.++++|||++++|..+..++.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 999998 7888888888888899999999999999999988865
No 82
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.62 E-value=5.4e-17 Score=142.44 Aligned_cols=143 Identities=20% Similarity=0.338 Sum_probs=91.6
Q ss_pred CeEEecCchheehhhhccccccccccccc-------------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCC
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP 136 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i-------------------~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p 136 (255)
.+|+++||++.|+. +++++++.+ .+|+++||+||||||||||+++|+|++. .+|
T Consensus 36 ~~i~~~~v~~~y~~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~-~~~ 108 (308)
T 1sq5_A 36 EDLSLEEVAEIYLP------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS-RWP 108 (308)
T ss_dssp TTCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT-TST
T ss_pred cccchHhHHHHHHH------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh-hCC
Confidence 35899999999964 559999988 8999999999999999999999999982 012
Q ss_pred CCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCC-ccCCCCCccccc
Q 025293 137 QKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGD 215 (255)
Q Consensus 137 ~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~lS~G~kq 215 (255)
++|+ ..++..+++..... ........ ...+.+...+.......+..+..... ...+.++....+
T Consensus 109 ~~G~-----------i~vi~~d~~~~~~~---~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~ 173 (308)
T 1sq5_A 109 EHRR-----------VELITTDGFLHPNQ---VLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYD 173 (308)
T ss_dssp TCCC-----------EEEEEGGGGBCCHH---HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTE
T ss_pred CCCe-----------EEEEecCCccCcHH---HHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccC
Confidence 3331 11244477643110 00000000 11222223344444445544443333 456778877778
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCC
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLD 240 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD 240 (255)
|+..+......++++|+|+|++..+
T Consensus 174 ~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 174 VIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp ECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred cccccceecCCCCEEEECchhhCCC
Confidence 8876555666789999999999987
No 83
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.60 E-value=2.5e-16 Score=140.29 Aligned_cols=146 Identities=12% Similarity=0.078 Sum_probs=88.3
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
++++++++++.|+.. .+ +++++ |.|.+|+++||+||||||||||+++|+|+.. |+. |. +
T Consensus 44 ~~i~~~~l~~~~~tg-~~--ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~-------------g~-i 102 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VR--AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADI-------------IV-L 102 (347)
T ss_dssp CSTTCCCCCSEECCS-CH--HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSE-------------EE-E
T ss_pred CCeeecccceecCCC-CE--EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCE-------------EE-E
Confidence 478999999999732 22 66999 9999999999999999999999999999985 444 43 3
Q ss_pred ecCCCCCCC-cc-CCcccChHHHHHhcCC-CC--CccHHHHH------HHHHhhcc-cCC-----ccCCCCCcccccchh
Q 025293 156 PMDGFHLYL-SQ-LDAMEDPKEAHARRGA-PW--TFNPLLLL------NCLKNLRN-QGS-----VYAPSFDHGVGDPVE 218 (255)
Q Consensus 156 ~~~~~~~~~-~~-l~~~~~~~~~~~~~~~-~~--~~~~~~~~------~~l~~l~~-~~~-----~~~~~lS~G~kqrv~ 218 (255)
...|..... .. ...... ........+ .+ ......+. .+.+.+.. ..+ ..+..||+|| ||++
T Consensus 103 ~~~G~~~~ev~~~i~~~~~-~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~ 180 (347)
T 2obl_A 103 ALIGERGREVNEFLALLPQ-STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVG 180 (347)
T ss_dssp EEESCCHHHHHHHHTTSCH-HHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHH
T ss_pred EEecccHHHHHHHHHhhhh-hhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHH
Confidence 333321000 00 000000 000000001 00 00111111 11121111 001 3456789999 8999
Q ss_pred hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+| +.+|++ +.|||+.....+.+++.+
T Consensus 181 la---l~~p~~------t~Gldp~~~~~l~~ller 206 (347)
T 2obl_A 181 LA---SGEPDV------RGGFPPSVFSSLPKLLER 206 (347)
T ss_dssp HH---TTCCCC------BTTBCHHHHHHHHHHHTT
T ss_pred HH---cCCCCc------ccCCCHHHHHHHHHHHHH
Confidence 88 356666 899999999999999865
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.59 E-value=5.4e-16 Score=145.41 Aligned_cols=139 Identities=11% Similarity=-0.000 Sum_probs=92.5
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
.+++++++..|++.. . + ++..|.+|++++|+|+||||||||+++++|... | .| .. ++.
T Consensus 257 ~~~~~~l~~g~~~ld-~--v---L~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~-~G--------~~----vi~ 314 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLD-E--M---CGGGFFKDSIILATGATGTGKTLLVSRFVENAC---A-NK--------ER----AIL 314 (525)
T ss_dssp CCCCCEECCSCHHHH-H--H---TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---T-TT--------CC----EEE
T ss_pred ccccceeecChHHHH-H--H---hCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---h-CC--------CC----EEE
Confidence 456777777775421 1 1 245899999999999999999999999999985 4 34 11 111
Q ss_pred cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc--cCCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe 234 (255)
+.... +. ..........++ ... ++. ..++ ..+.++..||+||+||+++|+++..+|++||+|
T Consensus 315 ~~~ee------~~-~~l~~~~~~~g~----~~~---~~~-~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD- 378 (525)
T 1tf7_A 315 FAYEE------SR-AQLLRNAYSWGM----DFE---EME-RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID- 378 (525)
T ss_dssp EESSS------CH-HHHHHHHHTTSC----CHH---HHH-HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred EEEeC------CH-HHHHHHHHHcCC----CHH---HHH-hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-
Confidence 11111 10 111111112222 111 121 2221 234566789999999999999999999999999
Q ss_pred CCCCCChh-----HHHHHHHHHHh
Q 025293 235 NYLFLDGG-----VWKDVSSMFDE 253 (255)
Q Consensus 235 p~~~LD~~-----~~~~l~~ll~~ 253 (255)
|+++||.. .+..+.+++..
T Consensus 379 p~~~Ld~~~~~~~~~~~i~~ll~~ 402 (525)
T 1tf7_A 379 SLSALARGVSNNAFRQFVIGVTGY 402 (525)
T ss_dssp CHHHHTSSSCHHHHHHHHHHHHHH
T ss_pred ChHHHHhhCChHHHHHHHHHHHHH
Confidence 99999999 88888888764
No 85
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.59 E-value=7.1e-17 Score=148.04 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=91.1
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
++++++++++.|+.. .+ +++++ |.|.+|++++|+||||||||||+++|+|+.. |+ .|. +
T Consensus 130 ~~l~~~~v~~~~~tg-~~--vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~-------------~G~-i 188 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VR--AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---AD-------------VIV-V 188 (438)
T ss_dssp CTTTSCCCCSBCCCS-CH--HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CS-------------EEE-E
T ss_pred CceEEeccceecCCC-ce--EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC---CC-------------eEE-E
Confidence 468999999999731 23 56999 9999999999999999999999999999985 44 443 4
Q ss_pred ecCCCCCCCccCCc-ccC---hHHHHHhcCC-CC-CccHHHHHHHHH-------hhcccC------CccCCCCCcccccc
Q 025293 156 PMDGFHLYLSQLDA-MED---PKEAHARRGA-PW-TFNPLLLLNCLK-------NLRNQG------SVYAPSFDHGVGDP 216 (255)
Q Consensus 156 ~~~~~~~~~~~l~~-~~~---~~~~~~~~~~-~~-~~~~~~~~~~l~-------~l~~~~------~~~~~~lS~G~kqr 216 (255)
.+.|..... .+. .+. .....+..++ ++ +.......++.+ .+.... -..+..||+|| ||
T Consensus 189 ~~~G~r~~e--v~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 189 GLIGERGRE--VKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-RE 265 (438)
T ss_dssp EEESCCHHH--HHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HH
T ss_pred EEeceecHH--HHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HH
Confidence 444431000 000 000 0111111222 22 111111112221 111100 01234679999 99
Q ss_pred hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+++| +.+|++ +.+||+.....+.+++.+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~ 294 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERA 294 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTC
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHH
Confidence 9988 567877 9999999999999998654
No 86
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.57 E-value=1e-15 Score=133.18 Aligned_cols=125 Identities=22% Similarity=0.270 Sum_probs=84.0
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHH------H
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA------H 177 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~------~ 177 (255)
-.++.++||+|++|||||||++.|.+++. +. |. ......++.+++|+... +..++..+. .
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~-g~-------~~~~~~iv~~D~f~~~~---~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EK-YG-------GEKSIGYASIDDFYLTH---EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HH-HG-------GGSCEEEEEGGGGBCCH---HHHHHHHHHTTTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hc-CC-------CCceEEEeccccccCCh---HHHHHHhccccccchh
Confidence 45789999999999999999999999995 21 10 01234434888886542 111111111 1
Q ss_pred HhcCCCCCccHHHHHHHHHhhcccC----------CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChh
Q 025293 178 ARRGAPWTFNPLLLLNCLKNLRNQG----------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~ 242 (255)
...+.+..++...+.+.++.+..+. ..+-..+||||+||+++|.+...+|+|||+||+++++|+.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 1234566677777778888876651 2233466999999999873333389999999999999985
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.57 E-value=3.9e-16 Score=155.86 Aligned_cols=135 Identities=16% Similarity=0.110 Sum_probs=82.6
Q ss_pred CeEEecC-----chheehhhhcccccccccccccCC-------CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCC
Q 025293 76 PVVEARC-----MDEVYDALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (255)
Q Consensus 76 ~~l~v~~-----lsk~y~~~~~~il~l~~isl~i~~-------GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~ 143 (255)
.+|+++| |++.|.+. +. +++|++|.+.+ |++++|+||||||||||||+| |++. +
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~--v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DF--IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---V------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CC--CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---H-------
T ss_pred ceEEEEeccccEEEEEecCC-ce--EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---H-------
Confidence 4689999 99999321 33 55999999987 999999999999999999999 9874 1
Q ss_pred CCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhh
Q 025293 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 144 ~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l 223 (255)
....|.++..... .+++.+.+. ...+..+ . .......|++++++ +++++++
T Consensus 815 ----~aqiG~~Vpq~~~-----~l~v~d~I~---~rig~~d------------~----~~~~~stf~~em~~-~a~al~l 865 (1022)
T 2o8b_B 815 ----MAQMGCYVPAEVC-----RLTPIDRVF---TRLGASD------------R----IMSGESTFFVELSE-TASILMH 865 (1022)
T ss_dssp ----HHTTTCCEESSEE-----EECCCSBEE---EECC-------------------------CHHHHHHHH-HHHHHHH
T ss_pred ----HhheeEEeccCcC-----CCCHHHHHH---HHcCCHH------------H----HhhchhhhHHHHHH-HHHHHHh
Confidence 0112211222211 122222210 0111110 0 01123456777665 8999999
Q ss_pred ccCCcEEEEcCCCCCCChhHH-HHHHHHHHh
Q 025293 224 GLQHKVVIVDGNYLFLDGGVW-KDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~illlDep~~~LD~~~~-~~l~~ll~~ 253 (255)
+.+|+++|+|||+.|+|+... ..++++++.
T Consensus 866 a~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~ 896 (1022)
T 2o8b_B 866 ATAHSLVLVDELGRGTATFDGTAIANAVVKE 896 (1022)
T ss_dssp CCTTCEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCChHHHHHHHHHHHHH
Confidence 999999999999999998864 445666654
No 88
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.57 E-value=1.6e-16 Score=138.95 Aligned_cols=138 Identities=13% Similarity=0.073 Sum_probs=61.7
Q ss_pred cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH-hcccCCCCCccCCCCCC-----CCCeEEE
Q 025293 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVK-----PPDVATV 154 (255)
Q Consensus 81 ~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl-l~~~~p~~G~~~~~~~~-----~~~~g~~ 154 (255)
.||++.|++. . ++++++|+| +|+|+||+|||||+++|.|. +. |++|..+.+... ....+..
T Consensus 2 ~~l~~~~~~~--~--~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~gi~~~g~~~~~t~~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHRK--S--VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERVISGAAEKIERTVQIEASTVE 68 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEE
T ss_pred CCCcceECCE--E--EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCCcccCCcccCCcceEeeEEEE
Confidence 4789999873 3 559999988 99999999999999999987 54 777721111100 1112322
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe 234 (255)
+..++... .+++.+...+..... .... ...+.+.+....+.++..+|+|++||+.+|++++ ++++||
T Consensus 69 ~q~~~~~~---~ltv~Dt~g~~~~~~-~~e~-----~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 69 IEERGVKL---RLTVVDTPGYGDAIN-CRDC-----FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp EC---CCE---EEEEEEEC-----------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred ecCCCccc---CcchhhhhhhhhhcC-cHHH-----HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 22222211 134444433321110 0000 0111111111123556789999999999998875 999999
Q ss_pred CCCC-CChhHH
Q 025293 235 NYLF-LDGGVW 244 (255)
Q Consensus 235 p~~~-LD~~~~ 244 (255)
|+.. ||+...
T Consensus 136 Pt~~~Ld~~~~ 146 (301)
T 2qnr_A 136 PFGHGLKPLDV 146 (301)
T ss_dssp SSSSSCCHHHH
T ss_pred CcccCCCHHHH
Confidence 9985 999764
No 89
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.57 E-value=2.1e-16 Score=155.80 Aligned_cols=117 Identities=18% Similarity=0.101 Sum_probs=75.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 175 (255)
+++|++|++++|++++|+||||||||||||+|+++.-. +..|..+ ...... +..... ..
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--aq~g~~v-----pa~~~~-i~~~d~--------i~----- 720 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--AQIGSYV-----PAEEAT-IGIVDG--------IF----- 720 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--HHHTCCB-----SSSEEE-EECCSE--------EE-----
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--hhcCccc-----cchhhh-hhHHHH--------HH-----
Confidence 55999999999999999999999999999999876520 1111100 000000 110000 00
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHH-HHHH
Q 025293 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD 252 (255)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~-~ll~ 252 (255)
...+. .++ .......||+||++++.++++ +.+|+++|||||++|+|+.....+. .+++
T Consensus 721 --~~ig~------------~d~----l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~ 779 (918)
T 3thx_B 721 --TRMGA------------ADN----IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLE 779 (918)
T ss_dssp --EEC--------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred --HhCCh------------HHH----HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 00010 001 122356789999999998888 6799999999999999999887776 5554
No 90
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.55 E-value=1.8e-15 Score=129.71 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=72.7
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCccCCCCCCCCCeEEEE
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPPDVATVL 155 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~-~G~~~~~~~~~~~~g~~i 155 (255)
++++++|++. . +|++++ +++|++++|+||||||||||+++|+|+++ |+ +|+ +
T Consensus 5 ~~~l~~l~~~--~------vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~--------------I 57 (261)
T 2eyu_A 5 IPEFKKLGLP--D------KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYH--------------I 57 (261)
T ss_dssp -CCGGGSSCC--T------HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCE--------------E
T ss_pred CCChHHCCCH--H------HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCE--------------E
Confidence 4677888753 2 569998 89999999999999999999999999996 55 553 2
Q ss_pred ecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293 156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe 234 (255)
.+++..... .. .. ...+ .+ ..+++. .. .-|++++++|..+|+++++||
T Consensus 58 ~~~g~~i~~--~~--~~------~~~~v~q-----------~~~gl~----~~------~l~~~la~aL~~~p~illlDE 106 (261)
T 2eyu_A 58 ITIEDPIEY--VF--KH------KKSIVNQ-----------REVGED----TK------SFADALRAALREDPDVIFVGE 106 (261)
T ss_dssp EEEESSCCS--CC--CC------SSSEEEE-----------EEBTTT----BS------CHHHHHHHHHHHCCSEEEESC
T ss_pred EEcCCccee--ec--CC------cceeeeH-----------HHhCCC----HH------HHHHHHHHHHhhCCCEEEeCC
Confidence 222221100 00 00 0000 00 011111 01 127999999999999999999
Q ss_pred CCCCCChhHHHHHHH
Q 025293 235 NYLFLDGGVWKDVSS 249 (255)
Q Consensus 235 p~~~LD~~~~~~l~~ 249 (255)
|+ |+.....+.+
T Consensus 107 p~---D~~~~~~~l~ 118 (261)
T 2eyu_A 107 MR---DLETVETALR 118 (261)
T ss_dssp CC---SHHHHHHHHH
T ss_pred CC---CHHHHHHHHH
Confidence 99 9887655544
No 91
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.55 E-value=1.5e-14 Score=128.37 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=44.9
Q ss_pred ccCCCCCccccc------chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 204 VYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 204 ~~~~~lS~G~kq------rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.++..|||||+| |+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~ 299 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 456789999999 66788888889999999999999999999999998865
No 92
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.54 E-value=5.1e-15 Score=128.64 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=37.7
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G 139 (255)
+|+++++.+++|++++|+||||||||||++.|+|.+. |++|
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~---~~~G 64 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG---TAMG 64 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH---HTSC
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH---HHcC
Confidence 5699999999999999999999999999999999996 5555
No 93
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.54 E-value=4.6e-17 Score=133.26 Aligned_cols=48 Identities=8% Similarity=0.018 Sum_probs=39.2
Q ss_pred CCCCCcccccchh-hhh---hhccCCcEEEEcC--CCCCCChhHHHHHHHHHHh
Q 025293 206 APSFDHGVGDPVE-DDI---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 206 ~~~lS~G~kqrv~-la~---~l~~~~~illlDe--p~~~LD~~~~~~l~~ll~~ 253 (255)
...+|+||++++. +.+ |+..+|++||+|| |+..+|+...+.+.++++.
T Consensus 81 ~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 81 VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence 3457899998874 444 5788999999999 8999999999999988864
No 94
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.53 E-value=2.1e-17 Score=136.69 Aligned_cols=34 Identities=32% Similarity=0.473 Sum_probs=25.7
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++| .+|++|++++|+||||||||||+|+|+|++
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3477 789999999999999999999999999998
No 95
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.53 E-value=2.5e-16 Score=149.96 Aligned_cols=152 Identities=8% Similarity=0.014 Sum_probs=71.8
Q ss_pred CeEEecCchheehhhhccccccccc----------ccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCc-cCC
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFD 143 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~i----------sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-~~G~-~~~ 143 (255)
.+++++||++.|+...++++ +.+ +++++. +||+|||||||||||++|+|+.. | ++|. .++
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll--~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~ 80 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCI--DLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRC 80 (608)
T ss_dssp -----------CHHHHHHHH--HHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCS
T ss_pred chhhhhhhhHHHHHHHHHHH--HHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEc
Confidence 35789999999986433332 333 355554 99999999999999999999986 7 6786 222
Q ss_pred CCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhh
Q 025293 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 144 ~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~ 222 (255)
+... ......... .. ....++ ++........++.+++..........-.+..++++.++..
T Consensus 81 g~~i-----~~~~~~~~~------~~-------~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~ 142 (608)
T 3szr_A 81 PLVL-----KLKKLVNED------KW-------RGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEIS 142 (608)
T ss_dssp CEEE-----EEEECSSSS------CC-------EEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEE
T ss_pred CEEE-----EEecCCccc------cc-------eeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhc
Confidence 2110 000000000 00 001111 1111111112222222221100001112233456666677
Q ss_pred hccCCcEEEEcCC------CCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGN------YLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep------~~~LD~~~~~~l~~ll~~ 253 (255)
....|+++|+||| +++||+..+.++.+++..
T Consensus 143 ~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 143 SRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp ESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred CCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 7778999999999 999999999999998875
No 96
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.52 E-value=1.5e-15 Score=133.67 Aligned_cols=141 Identities=25% Similarity=0.398 Sum_probs=102.2
Q ss_pred cCchheehhhhcccccccccccccCCCc------EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293 81 RCMDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (255)
Q Consensus 81 ~~lsk~y~~~~~~il~l~~isl~i~~Ge------ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (255)
+.|++.|++.. ++.+++..+.++. ++||+||||||||||+++|.+++.. +|+. ..++.
T Consensus 64 rll~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~----------~~v~~- 127 (321)
T 3tqc_A 64 RLLSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDH----------PNVEV- 127 (321)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTC----------CCEEE-
T ss_pred HHHHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCC----------CeEEE-
Confidence 34566677643 5588888887776 9999999999999999999999841 1122 23443
Q ss_pred EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC-CccCCCCCcccccchhhhhhhccCCcEEEEc
Q 025293 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (255)
Q Consensus 155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lS~G~kqrv~la~~l~~~~~illlD 233 (255)
+.+++++.....+. . ......++++..++...+.+.++.+..+. ....+.||.+..+|+......+..++|+|+|
T Consensus 128 i~~D~f~~~~~~l~--~--~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvE 203 (321)
T 3tqc_A 128 ITTDGFLYSNAKLE--K--QGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILE 203 (321)
T ss_dssp EEGGGGBCCHHHHH--H--TTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEE
T ss_pred Eeecccccchhhhh--h--HHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEE
Confidence 78888865421110 0 00112356677778888888888887766 6778899999999987656667789999999
Q ss_pred CCCCCCCh
Q 025293 234 GNYLFLDG 241 (255)
Q Consensus 234 ep~~~LD~ 241 (255)
++++..|+
T Consensus 204 Gi~lL~~~ 211 (321)
T 3tqc_A 204 GLNILQTG 211 (321)
T ss_dssp CTTTTCCC
T ss_pred cccccccc
Confidence 99999987
No 97
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=132.76 Aligned_cols=137 Identities=12% Similarity=0.001 Sum_probs=73.9
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc---cCCCCCCCCCe-
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDSQVKPPDV- 151 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~---~~~~~~~~~~~- 151 (255)
.+|+++||++.|++. . ++++++|+| +|+|+||||||||+++|+|... +..|. .... .++.
T Consensus 10 ~~l~~~~l~~~y~~~--~--vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~~~~~~~~~---~~t~~ 73 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--S--VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPEYPGPSHRI---KKTVQ 73 (418)
T ss_dssp -----CCCCCCTTTT--T--CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCCCCSCC--------CCE
T ss_pred CcEEEEecceeECCE--E--EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCCCCCcccCC---cccee
Confidence 478999999999873 3 559999997 9999999999999999999874 44442 1110 1111
Q ss_pred ----EEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCC
Q 025293 152 ----ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 152 ----g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~ 227 (255)
+.++..++.. ..+++.+++.+..... .......+...++ ..++.++++|++++++++.+|
T Consensus 74 ~~~i~~v~q~~~~~---~~Ltv~Dt~g~~~~~~---~~~~~~~i~~~i~----------~~~~~~l~qr~~IaRal~~d~ 137 (418)
T 2qag_C 74 VEQSKVLIKEGGVQ---LLLTIVDTPGFGDAVD---NSNCWQPVIDYID----------SKFEDYLNAESRVNRRQMPDN 137 (418)
T ss_dssp EEEEECC------C---EEEEEEECC--------------CHHHHHHHH----------HHHHHHTTTSCC-CCCCCCCC
T ss_pred eeeEEEEEecCCcc---cceeeeechhhhhhcc---chhhHHHHHHHHH----------HHHHHHHHHHHHHHHHhccCC
Confidence 1101111111 1134444443322110 0001111222221 134557788999999999999
Q ss_pred c---EEEEcCCC-CCCChhHH
Q 025293 228 K---VVIVDGNY-LFLDGGVW 244 (255)
Q Consensus 228 ~---illlDep~-~~LD~~~~ 244 (255)
+ +|++|||+ .+||+...
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH
T ss_pred CeeEEEEEecCcccCCCHHHH
Confidence 9 99999999 69998664
No 98
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.51 E-value=9.3e-15 Score=141.99 Aligned_cols=112 Identities=23% Similarity=0.218 Sum_probs=73.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 175 (255)
+++|++|+ |++++|+||||||||||||+|+|+.. .++.|.++. ..... + ........
T Consensus 568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~--~~~~G~~vp-----a~~~~-i--~~v~~i~~---------- 624 (765)
T 1ewq_A 568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL--LAQVGSFVP-----AEEAH-L--PLFDGIYT---------- 624 (765)
T ss_dssp CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH--HHTTTCCBS-----SSEEE-E--CCCSEEEE----------
T ss_pred EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh--hcccCceee-----hhccc-e--eeHHHhhc----------
Confidence 56999999 99999999999999999999999862 045553211 00111 1 00000000
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhh--ccCCcEEEEcCC---CCCCChhHH-HHHHH
Q 025293 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVW-KDVSS 249 (255)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l--~~~~~illlDep---~~~LD~~~~-~~l~~ 249 (255)
..+.. +++ ...+|+++++++.++.++ +.+|+++|+||| |++||.... ..+.+
T Consensus 625 ---~~~~~------------d~l-------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~ 682 (765)
T 1ewq_A 625 ---RIGAS------------DDL-------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAE 682 (765)
T ss_dssp ---ECCC-------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred ---cCCHH------------HHH-------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHH
Confidence 00100 011 113688999999999998 999999999999 999998775 45666
Q ss_pred HHH
Q 025293 250 MFD 252 (255)
Q Consensus 250 ll~ 252 (255)
.+.
T Consensus 683 ~L~ 685 (765)
T 1ewq_A 683 ALH 685 (765)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 99
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.50 E-value=1.8e-14 Score=142.45 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=70.1
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 175 (255)
+++|++|++.+|++++|+||||||||||||+|++..- .+..|.. .|..+..+...+.
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~--~aq~G~~------vpa~~~~~~~~d~--------------- 707 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL--MAQIGCF------VPCESAEVSIVDC--------------- 707 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHH--HHHHTCC------BSEEEEEEECCSE---------------
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHH--HHhcCCc------cccccccchHHHH---------------
Confidence 5599999999999999999999999999999954431 0112210 0111111111000
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhh--ccCCcEEEEcCCCCCCChhHHHHH-HHHHH
Q 025293 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGNYLFLDGGVWKDV-SSMFD 252 (255)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l--~~~~~illlDep~~~LD~~~~~~l-~~ll~ 252 (255)
++..++.. +.....+|+++.++..++.++ +.+|+++|+|||+.|+|+.....+ +.+++
T Consensus 708 ------------------i~~~ig~~-d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~ 768 (934)
T 3thx_A 708 ------------------ILARVGAG-DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISE 768 (934)
T ss_dssp ------------------EEEECC----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHH
T ss_pred ------------------HHHhcCch-hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 00001110 111234666666666666666 889999999999999999887776 55544
No 100
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.50 E-value=5.5e-15 Score=117.43 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=48.8
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
++.+++++.|++. . +++++||+|++|++++|+||||||||||+|+|+|++ |++|+
T Consensus 8 ~~~~~~~~~~g~~--~--~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~ 62 (158)
T 1htw_A 8 IPDEFSMLRFGKK--F--AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGN 62 (158)
T ss_dssp ECSHHHHHHHHHH--H--HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSC
T ss_pred cCCHHHHHHHHHH--H--HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCe
Confidence 4456788999873 2 569999999999999999999999999999999998 88898
No 101
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.49 E-value=8e-15 Score=131.07 Aligned_cols=49 Identities=16% Similarity=0.063 Sum_probs=45.3
Q ss_pred cCC-CCCcccccchhhhhhhc---------cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 205 YAP-SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 205 ~~~-~lS~G~kqrv~la~~l~---------~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++. .+|+||+||+++|++|+ .+|+||||||||++||+..+..+.+++.+
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~ 319 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAAS 319 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHH
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHh
Confidence 344 68999999999999999 89999999999999999999999999865
No 102
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.48 E-value=1.4e-15 Score=128.21 Aligned_cols=49 Identities=22% Similarity=0.252 Sum_probs=36.6
Q ss_pred CeEEecCchheehhhhcccccccccc-cccCCCcEEEEECCCCCcHHHHHHHHH--HHh
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALA-SNVNVKHIVGLAGPPGAGKSTLAAEVV--RRI 131 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~is-l~i~~GeivgLiGpNGsGKSTLLk~L~--Gll 131 (255)
.++++++++..|... +++- =.|++|++++|+||||||||||+++|+ |++
T Consensus 5 ~~~~~~~i~tg~~~l-------D~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~ 56 (251)
T 2ehv_A 5 AYQPVRRVKSGIPGF-------DELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE 56 (251)
T ss_dssp ---CCCEECCSCTTT-------GGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cccccceeecCCHhH-------HHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356777887777542 3331 168999999999999999999999999 663
No 103
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.48 E-value=3.9e-15 Score=123.07 Aligned_cols=119 Identities=32% Similarity=0.492 Sum_probs=72.7
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 183 (255)
.++|+++||+||||||||||+++|+|++. |+ | +..|. +.+++++..... ..+... ....+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g---------~~~g~-v~~d~~~~~~~~---~~~~~~-~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G---------LPAEV-VPMDGFHLDNRL---LEPRGL-LPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T---------CCEEE-EESGGGBCCHHH---HGGGTC-GGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C---------CceEE-EecCCCcCCHHH---HHHhcc-cccCCCC
Confidence 57899999999999999999999999995 32 2 24565 788887653210 011000 0112333
Q ss_pred CCccHHHHHHHHHhhcccC------CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHH
Q 025293 184 WTFNPLLLLNCLKNLRNQG------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 246 (255)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~------~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~ 246 (255)
..++...+...+..+.... .......|+|++|+++++ ++++++|++++.+|++.+..
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~------~~~~i~eg~~~l~de~~~~~ 143 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPE------CRVAIIEGNYLLFDAPGWRD 143 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTT------CCEEEEEESSTTBCSTTGGG
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCC------CcEEEECCceeccCCchhHH
Confidence 4444444455555543331 122234688999988743 36677777777777654433
No 104
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.47 E-value=1.4e-15 Score=142.60 Aligned_cols=57 Identities=11% Similarity=0.190 Sum_probs=45.2
Q ss_pred CeEEecCchheehhhhccccccccccc-ccCCCcEEEEECCCCCcHHHHHHH--HHHHhcccCCCCC
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKA 139 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl-~i~~GeivgLiGpNGsGKSTLLk~--L~Gll~~~~p~~G 139 (255)
.+++.+++.+.+++. + +|++++| .|++|++++|+||||||||||+++ ++|+++ |++|
T Consensus 11 ~~~~~~~~~~~~~g~--~--~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g 70 (525)
T 1tf7_A 11 NNSEHQAIAKMRTMI--E--GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEP 70 (525)
T ss_dssp ---CCSSCCEECCCC--T--THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCC
T ss_pred CCccccccccccCCc--h--hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCC
Confidence 456777776655552 2 6699999 999999999999999999999999 789995 5555
No 105
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.44 E-value=3.7e-14 Score=117.91 Aligned_cols=132 Identities=16% Similarity=0.140 Sum_probs=75.4
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
++++.++..+.... . ++. =-|++|++++|+||||||||||+++|+|... +..|.. ....+. +.+
T Consensus 2 ~~~~~i~tG~~~LD-~--~l~---ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~---~~~~~g------~~~~~~-i~~ 65 (231)
T 4a74_A 2 ATIGRISTGSKSLD-K--LLG---GGIETQAITEVFGEFGSGKTQLAHTLAVMVQ---LPPEEG------GLNGSV-IWI 65 (231)
T ss_dssp CCCCEECCSCHHHH-H--HTT---SSEESSEEEEEEESTTSSHHHHHHHHHHHTT---SCGGGT------CCSCEE-EEE
T ss_pred CcCCccCCCChhHH-h--Hhc---CCCCCCcEEEEECCCCCCHHHHHHHHHHHHh---cccccC------CCCCEE-EEE
Confidence 45667777775532 1 222 2688999999999999999999999999764 433210 112222 444
Q ss_pred CCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccc-cchhhhhhh-------ccCCcE
Q 025293 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG-DPVEDDILV-------GLQHKV 229 (255)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~k-qrv~la~~l-------~~~~~i 229 (255)
++.... . .+.........++. ..++++++.+.. .++.+++ +.+..+..+ ..+|++
T Consensus 66 ~~~~~~----~-~~~i~~~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 128 (231)
T 4a74_A 66 DTENTF----R-PERIREIAQNRGLD-------PDEVLKHIYVAR-----AFNSNHQMLLVQQAEDKIKELLNTDRPVKL 128 (231)
T ss_dssp ESSSCC----C-HHHHHHHHHHTTSC-------HHHHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred ECCCCC----C-HHHHHHHHHHcCCC-------HHHHhhcEEEEe-----cCChHHHHHHHHHHHHHHHHhcccCCceeE
Confidence 443211 1 11222333333322 115667665432 2333332 223333333 348999
Q ss_pred EEEcCCCCCCChh
Q 025293 230 VIVDGNYLFLDGG 242 (255)
Q Consensus 230 lllDep~~~LD~~ 242 (255)
+++|||++++|+.
T Consensus 129 lilDe~~~~l~~~ 141 (231)
T 4a74_A 129 LIVDSLTSHFRSE 141 (231)
T ss_dssp EEEETSSHHHHHH
T ss_pred EEECChHHHhccc
Confidence 9999999999983
No 106
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.42 E-value=3e-13 Score=116.60 Aligned_cols=130 Identities=15% Similarity=0.078 Sum_probs=78.2
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcC
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 181 (255)
.+++|++++|+||||||||||++.|++.+. .|. .++.... ..+.++.+.... +. +.........+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~g~~~~--~~~~v~~~~~e~------~~-~~~~~r~~~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLLEVGEL--PTGPVIYLPAED------PP-TAIHHRLHALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTTCCCCC--CCCCEEEEESSS------CH-HHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcCCCccC--CCccEEEEECCC------CH-HHHHHHHHHHH
Confidence 477999999999999999999999999773 344 2221111 111112221111 11 11111111122
Q ss_pred CCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCC--CCChhHH---HHHHHHH
Q 025293 182 APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDGGVW---KDVSSMF 251 (255)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~--~LD~~~~---~~l~~ll 251 (255)
. .........+++++.+. ....+..||+|+.+++ ++++.+|+++|+|||++ ++|+... .++...|
T Consensus 92 ~--~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L 163 (279)
T 1nlf_A 92 A--HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM 163 (279)
T ss_dssp T--TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred h--hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence 1 22233445667777664 3456788999997765 46677999999999999 8998554 4444444
No 107
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.41 E-value=2.9e-15 Score=132.97 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=53.0
Q ss_pred CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
|.+|+++++++.|+... ++++++|++.+|++++|+|+||||||||+++|+|++. |++|+
T Consensus 27 i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~ 85 (337)
T 2qm8_A 27 ITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHK 85 (337)
T ss_dssp HHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC
T ss_pred HHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCE
Confidence 45689999999998633 5599999999999999999999999999999999997 88887
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.39 E-value=5.2e-14 Score=116.88 Aligned_cols=134 Identities=9% Similarity=0.051 Sum_probs=76.4
Q ss_pred ccccccc-ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChH
Q 025293 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (255)
Q Consensus 96 ~l~~isl-~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~ 174 (255)
.|+++.. .+++|++++|+||||||||||++.|++... +..| .++.+. ... +. +...
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~-------------~v~~~~-~~~-----~~-~~~~ 67 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGD-------------PCIYVT-TEE-----SR-DSII 67 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTC-------------CEEEEE-SSS-----CH-HHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCC-------------eEEEEE-ccc-----CH-HHHH
Confidence 4588887 899999999999999999999999998874 3333 111111 110 11 1111
Q ss_pred HHHHhcCCC-CCccHHHHHHHHHhhcc--cCCccCCCCCcccccchhhhhhhccCCc--EEEEcCCCCCC--ChhHHHHH
Q 025293 175 EAHARRGAP-WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL--DGGVWKDV 247 (255)
Q Consensus 175 ~~~~~~~~~-~~~~~~~~~~~l~~l~~--~~~~~~~~lS~G~kqrv~la~~l~~~~~--illlDep~~~L--D~~~~~~l 247 (255)
......++. +...... ..+++.+.. .........|.++.++...+.+...+|+ ++++|||++++ |+..+..+
T Consensus 68 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~ 146 (235)
T 2w0m_A 68 RQAKQFNWDFEEYIEKK-LIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKI 146 (235)
T ss_dssp HHHHHTTCCCGGGBTTT-EEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHH
T ss_pred HHHHHhcchHHHHhhCC-EEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHH
Confidence 111122321 1100000 000000000 0000112337777777666666667999 99999999777 99888888
Q ss_pred HHHHHh
Q 025293 248 SSMFDE 253 (255)
Q Consensus 248 ~~ll~~ 253 (255)
.+.+.+
T Consensus 147 ~~~l~~ 152 (235)
T 2w0m_A 147 SYYLKR 152 (235)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 109
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.37 E-value=4.1e-13 Score=131.12 Aligned_cols=116 Identities=13% Similarity=0.043 Sum_probs=67.5
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~ 175 (255)
+++|++|+ ++|++++|+||||||||||||+|+|+... ...|..+. ..... +.+ .... .
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~--~q~G~~vp-----a~~~~-i~~--~~~i------~----- 654 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM--AYIGSYVP-----AQKVE-IGP--IDRI------F----- 654 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH--HTTTCCBS-----SSEEE-ECC--CCEE------E-----
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH--HhcCcccc-----hhccc-cee--HHHH------H-----
Confidence 56999999 99999999999999999999999998520 12231100 00000 100 0000 0
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHH-HHHHH
Q 025293 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV-SSMFD 252 (255)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l-~~ll~ 252 (255)
...+. .+++. .....+|.++++ ++.+...+.+|+++|+|||+.|+|+.....+ +++++
T Consensus 655 --~~~~~------------~d~l~----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~ 713 (800)
T 1wb9_A 655 --TRVGA------------ADDLA----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAE 713 (800)
T ss_dssp --EEEC---------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHH
T ss_pred --hhCCH------------HHHHH----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHH
Confidence 00010 01111 112346666654 4444556789999999999999998766654 45554
No 110
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.36 E-value=5.5e-14 Score=128.05 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=47.1
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
.++++++++.|+... +|+++ +. .+|++++|+|||||||||||++|+|++. |++|+
T Consensus 143 ~~~l~~Lg~~~~~~~----~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~ 197 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD----NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN---SSERN 197 (418)
T ss_dssp CCCGGGSCCCHHHHH----HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSC
T ss_pred CCCHHHcCCCHHHHH----HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCE
Confidence 567888988887633 45888 54 8999999999999999999999999997 88887
No 111
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.35 E-value=2.9e-13 Score=118.46 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=29.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
+|++++|+||||||||||+++|+|+++ |++|+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~ 132 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKK 132 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCE
Confidence 699999999999999999999999997 77664
No 112
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.34 E-value=6.3e-14 Score=125.54 Aligned_cols=133 Identities=9% Similarity=0.041 Sum_probs=75.8
Q ss_pred cccccccCC--CcEEEEECCCCCcHHHHHHHHHHHhcccCCCC----Cc-cCCCCCCCCCeEEEEecCCCCCCCccCCcc
Q 025293 98 SALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK----AS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAM 170 (255)
Q Consensus 98 ~~isl~i~~--GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~----G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~ 170 (255)
..|++.|.+ |++++|+||||||||||+++|+|++. |++ |+ .+++. .++.... +...
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~~~e~G~i~i~~~-----------~~~~~~~---~~~~ 221 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTSAWEYGREFVFEK-----------LGGDEQA---MQYS 221 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEECCTTHHHHHHS-----------SSSCTTS---SCTT
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCcchhhHHHHHHhh-----------cCCCccc---CChh
Confidence 779999999 99999999999999999999999996 666 43 11000 0111110 1111
Q ss_pred cChHHHHHhcCCCCCccHHHHHHHHHhhcccCC----ccCCCCCcccccchhhhhhh-ccCCcEEEEcC---CC------
Q 025293 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS----VYAPSFDHGVGDPVEDDILV-GLQHKVVIVDG---NY------ 236 (255)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~lS~G~kqrv~la~~l-~~~~~illlDe---p~------ 236 (255)
+ ...+... .+.. .....++.+++.+... ..+..+++|++++..++.++ ..+|+++++|| |+
T Consensus 222 ~-~~~I~~~---~q~~-~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~ 296 (365)
T 1lw7_A 222 D-YPQMALG---HQRY-IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLR 296 (365)
T ss_dssp T-HHHHHHH---HHHH-HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-------
T ss_pred H-HHHHHHH---HHHH-HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCc
Confidence 1 1000000 1110 0111233444433211 11223456677777776665 35899999998 65
Q ss_pred CCCChhHHHHHHHHHH
Q 025293 237 LFLDGGVWKDVSSMFD 252 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~ 252 (255)
+++|+..+..+.+++.
T Consensus 297 ~sld~~~r~~l~~~l~ 312 (365)
T 1lw7_A 297 SLGSQKQRQQFQQLLK 312 (365)
T ss_dssp ----CCSHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHH
Confidence 6899999999988884
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.34 E-value=1.1e-12 Score=117.12 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=32.4
Q ss_pred ccccccc-------ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 96 PTSALAS-------NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~isl-------~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.++++.+ .+.+|++++|+|||||||||||++|+|++.
T Consensus 105 ~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 105 TMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4466665 778899999999999999999999999996
No 114
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.32 E-value=5.5e-13 Score=118.84 Aligned_cols=119 Identities=19% Similarity=0.174 Sum_probs=75.4
Q ss_pred ccc-ccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHH
Q 025293 98 SAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (255)
Q Consensus 98 ~~i-sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~ 176 (255)
+.+ ++.|++|++++|+||||||||||++.|++.... -|+.| .. -|.++.+++.... . .+.+...
T Consensus 121 D~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~-~~~~G--------g~-~G~vi~i~~e~~~----~-~~~i~~i 185 (349)
T 1pzn_A 121 DKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL-PPEEG--------GL-NGSVIWIDTENTF----R-PERIREI 185 (349)
T ss_dssp HHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTS-CGGGT--------SC-SCEEEEEESSSCC----C-HHHHHHH
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-chhcC--------CC-CCeEEEEeCCCCC----C-HHHHHHH
Confidence 444 588999999999999999999999999999720 04442 00 1333555554321 0 1112222
Q ss_pred HHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhc-------cCCcEEEEcCCCCCCChh
Q 025293 177 HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~-------~~~~illlDep~~~LD~~ 242 (255)
....++ .. .++++++.+... ..+.++.+++.++..++ .+|++||+|||++++|+.
T Consensus 186 ~q~~~~----~~---~~v~~ni~~~~~----~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 186 AQNRGL----DP---DEVLKHIYVARA----FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp HHTTTC----CH---HHHGGGEEEEEC----CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred HHHcCC----CH---HHHhhCEEEEec----CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence 222221 11 155566554321 12567788888887776 689999999999999985
No 115
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.28 E-value=8.3e-13 Score=106.14 Aligned_cols=104 Identities=14% Similarity=0.075 Sum_probs=57.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHH-HhcC----C
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRG----A 182 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~-~~~~----~ 182 (255)
++++|+|+||||||||+++|+|++. |+. ...|. +.+++..+.. ++. ......+ ...+ +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g----------~~~G~-I~~dg~~i~~--~~~-~~~d~~r~~~ig~~~~~ 65 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ERG----------LRVAV-VKRHAHGDFE--IDK-EGKDSWKIYNSGADVVI 65 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HTT----------CCEEE-EEC---------------CHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hcC----------CceEE-EEEcCccccc--CCc-cchhHHHHHhcCCceEE
Confidence 5899999999999999999999995 431 11454 5555543211 110 0011111 1223 1
Q ss_pred -CCCcc-------HH---HHHHHHHh-hcccCCcc-CCCCCcccccchhhhhhhccCCcE
Q 025293 183 -PWTFN-------PL---LLLNCLKN-LRNQGSVY-APSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 183 -~~~~~-------~~---~~~~~l~~-l~~~~~~~-~~~lS~G~kqrv~la~~l~~~~~i 229 (255)
+++.. .. .+.++++. +. +.+.. ...||+||+||+++||++..+|++
T Consensus 66 ~~~~~~~~i~~~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 66 ASPVKLAFIRRVSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp ECSSEEEEEEECCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred ECCCcEEEEecCChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 22110 11 23344444 33 22221 224999999999999999998876
No 116
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.28 E-value=5.7e-13 Score=121.21 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=40.2
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcE--EEEECCCCCcHHHHHHHHHHHh
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~Gei--vgLiGpNGsGKSTLLk~L~Gll 131 (255)
..+++.+ ++.|++ .+ ++++||+|++|++ +||+||||||||||+++|+|+.
T Consensus 15 ~~l~~~~-~~~y~~--~~---L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 15 RTVPLAG-HVGFDS--LP---DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp --CCCCC-CC-CC----C---HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ceEEEee-EEEECC--ee---cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3567778 899976 33 4999999999999 9999999999999999999974
No 117
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.26 E-value=1.4e-12 Score=115.64 Aligned_cols=157 Identities=32% Similarity=0.560 Sum_probs=111.4
Q ss_pred cccccccccCCCcE--EEEECCCCCcHHHHHHHHHHHhcccC--------------------------------------
Q 025293 96 PTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIW-------------------------------------- 135 (255)
Q Consensus 96 ~l~~isl~i~~Gei--vgLiGpNGsGKSTLLk~L~Gll~~~~-------------------------------------- 135 (255)
+++.+++.+++|++ ++|+|++||||||+.++|++.+...+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i 90 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM 90 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence 44889999999999 99999999999999999999764211
Q ss_pred -CCCCccC-----------------------------CCC-------------CCC---C---CeEEEEecCCCCCCCcc
Q 025293 136 -PQKASSF-----------------------------DSQ-------------VKP---P---DVATVLPMDGFHLYLSQ 166 (255)
Q Consensus 136 -p~~G~~~-----------------------------~~~-------------~~~---~---~~g~~i~~~~~~~~~~~ 166 (255)
...|+.+ ++. ... + ....++.+|||+.....
T Consensus 91 f~~~ge~fr~~E~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~mDgFh~~~~~ 170 (359)
T 2ga8_A 91 IENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC 170 (359)
T ss_dssp HHTTTCCGGGTTCTTCCCEEEEC-----CCCEEEECTTGGGGCEEECC------------CCCCSEEEEEGGGGBCCHHH
T ss_pred HHHhcccchHHHhhhcccceeecccCCcccccccccccccccccccccccccccccccccccCCeEEEEecCcCCCCHHH
Confidence 0011100 000 000 0 13456889999987665
Q ss_pred CCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-----------------------------CCccCCCCCcccccch
Q 025293 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----------------------------~~~~~~~lS~G~kqrv 217 (255)
++...+......++|.|..++...+...++.|.-+ ....+|.|+.....++
T Consensus 171 L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~ 250 (359)
T 2ga8_A 171 LDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPT 250 (359)
T ss_dssp HTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEE
T ss_pred HhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCC
Confidence 55544444556678888888888777777666443 2345778898888888
Q ss_pred hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~ 252 (255)
.-...+...++++|+|++.+.++...|..+.++++
T Consensus 251 ~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D 285 (359)
T 2ga8_A 251 PDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLA 285 (359)
T ss_dssp EEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHH
T ss_pred CCceEecCCCCEEEEEeehhhccccchhhhhhccc
Confidence 77666666679999999888899777888888887
No 118
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.24 E-value=2.1e-13 Score=115.36 Aligned_cols=44 Identities=9% Similarity=-0.055 Sum_probs=34.9
Q ss_pred CccCCCCCcccccchhhhhhh-ccCCcEEEEc----CCCCCCChhHHHHHHHHHHh
Q 025293 203 SVYAPSFDHGVGDPVEDDILV-GLQHKVVIVD----GNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 203 ~~~~~~lS~G~kqrv~la~~l-~~~~~illlD----ep~~~LD~~~~~~l~~ll~~ 253 (255)
.+++..+|| |+ +++ +.+|+++++| |||++||+.....+.+.+..
T Consensus 147 ~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 147 RRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp TEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred cCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 344567887 55 455 7899999999 99999999988888877754
No 119
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.21 E-value=7e-12 Score=112.16 Aligned_cols=58 Identities=24% Similarity=0.357 Sum_probs=46.2
Q ss_pred EecCchhe---ehhhhcccc-------cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293 79 EARCMDEV---YDALAQRLL-------PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 79 ~v~~lsk~---y~~~~~~il-------~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G 139 (255)
+++++++. |+...+.++ ++++++|.|++|++++|+||||||||||+++|+|+++ |++|
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g 204 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQR 204 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCce
Confidence 56777777 753212222 3399999999999999999999999999999999996 5555
No 120
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.20 E-value=1.6e-11 Score=98.66 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=29.2
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+|.+.+|+.++|+||||+|||||+++|++.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46677899999999999999999999999984
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.19 E-value=4.9e-12 Score=102.31 Aligned_cols=28 Identities=36% Similarity=0.478 Sum_probs=25.8
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.+++|++++|+||||||||||+++|+|.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4779999999999999999999999996
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.17 E-value=5e-11 Score=98.14 Aligned_cols=110 Identities=17% Similarity=0.098 Sum_probs=65.8
Q ss_pred ccccccc-ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChH
Q 025293 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (255)
Q Consensus 96 ~l~~isl-~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~ 174 (255)
.|+++.. .+++|++++|+||||||||||++.|++ .. .. .++.++.... .+. +...
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~---------------~~---~v~~i~~~~~----~~~-~~~~ 63 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LS---------------GK---KVAYVDTEGG----FSP-ERLV 63 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HH---------------CS---EEEEEESSCC----CCH-HHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-Hc---------------CC---cEEEEECCCC----CCH-HHHH
Confidence 3466655 689999999999999999999999999 42 11 1223322210 111 1111
Q ss_pred HHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCccc--ccchhhhhhhccC-CcEEEEcCCCCCCChh
Q 025293 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV--GDPVEDDILVGLQ-HKVVIVDGNYLFLDGG 242 (255)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~--kqrv~la~~l~~~-~~illlDep~~~LD~~ 242 (255)
......+. .. .++++++. +...+.++ ++++..+++++.. |+++|+|||++.+|..
T Consensus 64 ~~~~~~~~----~~---~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 64 QMAETRGL----NP---EEALSRFI------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp HHHHTTTC----CH---HHHHHHEE------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred HHHHhcCC----Ch---HHHhhcEE------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 11112221 11 12334432 22344554 4567777788765 9999999999999974
No 123
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.16 E-value=2e-11 Score=112.65 Aligned_cols=45 Identities=29% Similarity=0.316 Sum_probs=41.5
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~ 144 (255)
+|+++||+|++ ++++|+|||||||||||++|+|+++ |++|+ .+++
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g 64 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRN 64 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECC
Confidence 66999999999 9999999999999999999999998 99999 4544
No 124
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.16 E-value=1.2e-11 Score=97.00 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=46.4
Q ss_pred CccCCCCCcccccchhhh------hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 203 SVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 203 ~~~~~~lS~G~kqrv~la------~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+.++..|||||+||+++| ++++.+|+++|+||||++||+..+..+.+++.+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 108 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 108 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHH
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 456789999999999876 788899999999999999999999999999875
No 125
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.16 E-value=2.3e-11 Score=105.93 Aligned_cols=130 Identities=11% Similarity=-0.009 Sum_probs=79.6
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
+.++++++.|+.. . ++++|+ +|++++|+|+||+||||++..|++.+. +..| . +.+
T Consensus 77 ~~~~~l~~~~~~~----~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~-------------~-v~l 131 (295)
T 1ls1_A 77 TVYEALKEALGGE----A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGR-------------R-PLL 131 (295)
T ss_dssp HHHHHHHHHTTSS----C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTC-------------C-EEE
T ss_pred HHHHHHHHHHCCC----C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC-------------e-EEE
Confidence 4567888888652 1 678888 899999999999999999999999995 3333 2 222
Q ss_pred CCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCC-C
Q 025293 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN-Y 236 (255)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep-~ 236 (255)
.+.+... . ... . .+..+.+..++.........+..+-+|.+++.+...+++++|+|+| +
T Consensus 132 ~~~d~~~---~-----~~~-~-----------ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 132 VAADTQR---P-----AAR-E-----------QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGR 191 (295)
T ss_dssp EECCSSC---H-----HHH-H-----------HHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCC
T ss_pred ecCCccc---H-----hHH-H-----------HHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 2222211 0 000 0 0111222233221100001112233466777776679999999998 9
Q ss_pred CCCChhHHHHHHHHHH
Q 025293 237 LFLDGGVWKDVSSMFD 252 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~ 252 (255)
+++|.....++.++.+
T Consensus 192 ~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 192 LQIDEPLMGELARLKE 207 (295)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhh
Confidence 9999877777766654
No 126
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.15 E-value=1.6e-12 Score=114.80 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=30.8
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G 139 (255)
..++|++++|+||||||||||+++|+|++. |++|
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g 158 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGF 158 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCC
Confidence 457899999999999999999999999997 6666
No 127
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.14 E-value=4.3e-11 Score=99.84 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=26.1
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.-..++|++++|+||||||||||+++|+|+++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34578999999999999999999999999984
No 128
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.12 E-value=1.1e-10 Score=91.61 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=26.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+|+.++|+||||+|||||+++|++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999984
No 129
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.12 E-value=1.8e-12 Score=114.65 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=48.4
Q ss_pred CeEEecCchheehhhhcccccccccccccCCC-------cEEEEECCCCCcHHHHHHHHHHHhccc-CCCCCc
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS 140 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~G-------eivgLiGpNGsGKSTLLk~L~Gll~~~-~p~~G~ 140 (255)
.+++.+++++.|+... +++++++.+..| +.++|+||||+|||||+++|+|.+... .+.+|.
T Consensus 17 ~~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~ 85 (334)
T 1in4_A 17 QFLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGP 85 (334)
T ss_dssp CTTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETT
T ss_pred HHcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEech
Confidence 3567789999998733 459999999876 899999999999999999999998200 055665
No 130
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.11 E-value=6.4e-11 Score=103.59 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=66.5
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHH
Q 025293 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (255)
Q Consensus 99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~ 178 (255)
.+++...+|++++|+|+|||||||+++.|++.+. +..| . +.+.+.+.+. ...
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~-------------k-V~lv~~D~~r--------~~a--- 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGK-------------S-VVLAAADTFR--------AAA--- 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTC-------------C-EEEEEECTTC--------HHH---
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCC-------------E-EEEEcccccc--------HHH---
Confidence 3566778999999999999999999999999995 4433 1 1122221110 000
Q ss_pred hcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccch---hhhhhhccCCcEEEEcCCCC
Q 025293 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQHKVVIVDGNYL 237 (255)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv---~la~~l~~~~~illlDep~~ 237 (255)
...+..+.+.+++.. ++..|+|+.+++ ++++++..+++++|+|+|..
T Consensus 148 ---------~eqL~~~~~~~gl~~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 ---------IEQLKIWGERVGATV---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ---------HHHHHHHHHHHTCEE---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ---------HHHHHHHHHHcCCcE---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 011223344444332 346688999998 78888889999999999874
No 131
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.09 E-value=1.2e-10 Score=104.55 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=30.5
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
|++++ +++|++++|+||||||||||+++|+|++.
T Consensus 128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 35554 88999999999999999999999999995
No 132
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.08 E-value=6.3e-13 Score=120.93 Aligned_cols=126 Identities=19% Similarity=0.130 Sum_probs=76.6
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCC-CCCCCccCCcccChHH-
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG-FHLYLSQLDAMEDPKE- 175 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~-~~~~~~~l~~~~~~~~- 175 (255)
++++|+++.|++++|+|+|||||||||++|+|.. |.-+.+. .....+..|. +.+++ ..+ ...+.+..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~----~~i~~~~-ftTl~p~~G~-V~~~~~~~~-----~l~DtpGli 216 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH----PKIAPYP-FTTLSPNLGV-VEVSEEERF-----TLADIPGII 216 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC----CEECCCT-TCSSCCEEEE-EECSSSCEE-----EEEECCCCC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC----ccccCcc-cceecceeeE-EEecCcceE-----EEEeccccc
Confidence 6899999999999999999999999999999985 3211100 0112445565 45443 111 11111100
Q ss_pred --HHHhcCCCCCccHHHHHHHHHh-------hcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHH
Q 025293 176 --AHARRGAPWTFNPLLLLNCLKN-------LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW 244 (255)
Q Consensus 176 --~~~~~~~~~~~~~~~~~~~l~~-------l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~ 244 (255)
.....++. . .....++. +.+. ..++..||+|+++++.++++|+..|.+|++ +.+|....
T Consensus 217 ~~a~~~~~L~----~-~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 217 EGASEGKGLG----L-EFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp CCGGGSCCSC----H-HHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred cchhhhhhhh----H-HHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 00001110 0 11111111 1111 345567899999999999999999999999 88998765
No 133
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.04 E-value=7.9e-13 Score=114.01 Aligned_cols=35 Identities=40% Similarity=0.491 Sum_probs=32.6
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+++++++.+++| ++|+||||||||||+++|+|...
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence 559999999999 99999999999999999999873
No 134
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.01 E-value=5e-11 Score=101.38 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=35.0
Q ss_pred CeEEecCc-hhee-hhhhcccccccccccccCC---CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 76 ~~l~v~~l-sk~y-~~~~~~il~l~~isl~i~~---GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++|+++|| ++.| ++ .. +|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~--~~--~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE--QQ--ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CH--HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCc--ch--hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999 9999 54 33 56999999999 9999999999999999999999977
No 135
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.00 E-value=3.1e-11 Score=107.54 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=60.4
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-CC-CC----CCCCCeEEEEecCCCCCCCccCCccc
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD-SQ----VKPPDVATVLPMDGFHLYLSQLDAME 171 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~~-~~----~~~~~~g~~i~~~~~~~~~~~l~~~~ 171 (255)
+++++.+ +|++++|+||||||||||+|+|+|+... |+.|++ .. +. ......+. +..+++. .+
T Consensus 207 ~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g~~tt~~~~i~~-v~q~~~l--------~d 274 (358)
T 2rcn_A 207 KPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLGQHTTTAARLYH-FPHGGDV--------ID 274 (358)
T ss_dssp HHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC-------------CCCEEEE-CTTSCEE--------EE
T ss_pred HHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCCccceEEEEEEE-ECCCCEe--------cC
Confidence 5666654 7999999999999999999999998720 566762 21 11 11112222 2222211 11
Q ss_pred ChHHHHHhcCCCCCccHH----HHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293 172 DPKEAHARRGAPWTFNPL----LLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~----~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l 223 (255)
.+... .+++.. .... .+.++++.+++. .+..+..+| |++||+++|.++
T Consensus 275 tpgv~--e~~l~~-l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 275 SPGVR--EFGLWH-LEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CHHHH--TCCCCC-CCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred cccHH--HhhhcC-CCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 11111 112211 1111 123445555544 355667899 999999999875
No 136
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.98 E-value=1.4e-10 Score=96.82 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=22.9
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHH-HHh
Q 025293 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRI 131 (255)
Q Consensus 97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~-Gll 131 (255)
..++||++++|++++|+||||||||||+++|+ |++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 38999999999999999999999999999999 998
No 137
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.98 E-value=3.4e-10 Score=98.80 Aligned_cols=115 Identities=15% Similarity=0.016 Sum_probs=66.8
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cC---CC-CCCC-------CCeEEEEecCCCCCCC--ccC
Q 025293 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF---DS-QVKP-------PDVATVLPMDGFHLYL--SQL 167 (255)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~---~~-~~~~-------~~~g~~i~~~~~~~~~--~~l 167 (255)
+++..|++++|+||||||||||+|+|+ ++. |+.|+ .+ .+ ++.. +..|.++...++.... ..+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~l 235 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFV 235 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTS
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccC
Confidence 456679999999999999999999999 887 99999 33 23 2211 1345433333332111 124
Q ss_pred CcccCh--HHH------HHhcCC-CCCccHHHHHHHHHhhcccC---CccCCCCCcccccchhhhh
Q 025293 168 DAMEDP--KEA------HARRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 168 ~~~~~~--~~~------~~~~~~-~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~kqrv~la~ 221 (255)
++ +++ .+. ....+. ........+.++++.+++.. +.++..||+..++++.+|+
T Consensus 236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 333 111 011221 22222345778888888753 4566778886666667665
No 138
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.96 E-value=1.7e-09 Score=90.29 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=26.4
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
-|++|++++|+||||||||||++.|++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999999999995
No 139
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.96 E-value=3.7e-10 Score=90.72 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=45.5
Q ss_pred ccCCCCCcccccchhhhhhhcc----CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 204 VYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 204 ~~~~~lS~G~kqrv~la~~l~~----~~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.++..||||||||+++|++++. +|+++|||||+++||+.+...+.++|.+.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~ 114 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKES 114 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHh
Confidence 4567899999999999999964 47999999999999999999999998753
No 140
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.91 E-value=6.9e-10 Score=102.42 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=36.4
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G 139 (255)
+++||++.+|++++|+|+||||||||+++|+|++. |++|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G 322 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGK 322 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTC
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCC
Confidence 78999999999999999999999999999999996 6655
No 141
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.91 E-value=6.3e-10 Score=90.66 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=26.3
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
|+++.+|++++|+||||||||||+++|+|++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5678899999999999999999999999997
No 142
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.90 E-value=5.4e-10 Score=110.06 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=54.7
Q ss_pred HHHHhhccc---CCccCCCCCcccccchhhhhhhccCC--cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 193 ~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~--~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+..+++. .++.+..|||||+||++||++|..+| ++|||||||++||+...+.+.++|++.
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L 552 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM 552 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHH
Confidence 457777775 47788999999999999999999884 999999999999999999999998753
No 143
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.90 E-value=1e-09 Score=108.30 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=55.2
Q ss_pred HHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCc--EEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 192 LNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 192 ~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~--illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
.+.+..+++. .++++..|||||+|||+||++|+.+|+ +|||||||++||+.....+.++|++.
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L 512 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL 512 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHT
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 4566677764 467788999999999999999998777 99999999999999999999999764
No 144
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.82 E-value=3.3e-09 Score=84.99 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=34.4
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
+++++.+.+| +++|+||||||||||+++|.+++. +..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCccc
Confidence 5778888898 999999999999999999999986 66664
No 145
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.82 E-value=2.2e-09 Score=102.10 Aligned_cols=164 Identities=17% Similarity=0.185 Sum_probs=88.9
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc--cCCCCCC---CCCeE
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQVK---PPDVA 152 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~--~~~~~~~---~~~~g 152 (255)
+.-++++..||... +++++++.+..|+.++|+||||+|||||+++|++++. +..+. .+..... .+..+
T Consensus 35 ~rp~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~~~~~~~p~i~ 107 (604)
T 3k1j_A 35 VPEKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPNPEDENMPRIK 107 (604)
T ss_dssp CCSSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECCTTCTTSCEEE
T ss_pred ccccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCCcccccCCcEE
Confidence 34456777787633 5599999999999999999999999999999999985 43321 1111100 11111
Q ss_pred EEEecCCCC-C-------------------CCccCCcccChHHHHHhcCC-CCCc---cHHHHHHHHHhhcccCCccCCC
Q 025293 153 TVLPMDGFH-L-------------------YLSQLDAMEDPKEAHARRGA-PWTF---NPLLLLNCLKNLRNQGSVYAPS 208 (255)
Q Consensus 153 ~~i~~~~~~-~-------------------~~~~l~~~~~~~~~~~~~~~-~~~~---~~~~~~~~l~~l~~~~~~~~~~ 208 (255)
. +...... . ....++...++.. ..... .... .......++..+.. .......
T Consensus 108 ~-~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v--~~~~~~~~~~v~~~~~~~~~L~G~~~~-~~~~~g~ 183 (604)
T 3k1j_A 108 T-VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLV--DNCGRTKAPFIDATGAHAGALLGDVRH-DPFQSGG 183 (604)
T ss_dssp E-EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEE--CCTTCSSCCEEECTTCCHHHHHCEECC-CCC----
T ss_pred E-EecchHHHHHHHHHHhhccchhhhhhcccccccccccceee--ccccCCCCCEEEcCCCCHHhcCceEEe-chhhcCC
Confidence 1 1000000 0 0000000000000 00000 0000 00001111111111 1122256
Q ss_pred CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+++|+++++..+.....++.+|++||... |++..+..+..+|++
T Consensus 184 ~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 184 LGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 88899999888888888999999999777 789999999998864
No 146
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.79 E-value=3.4e-10 Score=94.85 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=41.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
.|+++|+...|+. ++++.+ ++++|+|||||||||||++|+|++. |++|.
T Consensus 9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~ 57 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTL 57 (227)
T ss_dssp EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTT
T ss_pred EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCe
Confidence 6889999876642 233444 8999999999999999999999998 99997
No 147
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.78 E-value=4.1e-09 Score=104.16 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=53.9
Q ss_pred HHHHhhccc---CCccCCCCCcccccchhhhhhhccC--CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 193 ~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~--~~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
..+..+++. .++.+..|||||+||++||++|..+ |++|||||||++||+...+.+.++|++.
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L 569 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRL 569 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHH
Confidence 346666764 4678899999999999999999988 5899999999999999999999988753
No 148
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.76 E-value=6.8e-09 Score=93.92 Aligned_cols=111 Identities=15% Similarity=0.145 Sum_probs=59.8
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHH--HHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhc
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~--Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 180 (255)
-|++|++++|+||||||||||++.|+ ++++ ++.| ... +.++.+++.... .. .....+...+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p---~~~G--------g~~-~~viyid~E~~~----~~-~rl~~~a~~~ 236 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP---LDIG--------GGE-GKCLYIDTEGTF----RP-VRLVSIAQRF 236 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGT--------CCS-SEEEEEESSSCC----CH-HHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC---cccC--------CCC-CcEEEEeCCCcc----CH-HHHHHHHHHc
Confidence 58899999999999999999999554 4443 2333 111 223555554211 11 1122233344
Q ss_pred CCCCCccHHHHHHHHHhhcccCCccCCCCCc-ccccchhhhhhh--ccCCcEEEEcCCCCCCChh
Q 025293 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH-GVGDPVEDDILV--GLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~-G~kqrv~la~~l--~~~~~illlDep~~~LD~~ 242 (255)
++. ..++++++.+... ++. .+.+.+..+..+ ..+|+++++|+|+..+|..
T Consensus 237 gl~-------~~~vleni~~~~~-----~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 237 GLD-------PDDALNNVAYARA-----YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp TCC-------HHHHHHTEEEEEC-----CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred CCC-------hHhHhhcEEEecc-----CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence 432 1245666554321 222 112222222221 3479999999999999864
No 149
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.75 E-value=7e-09 Score=101.58 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=54.1
Q ss_pred HHHHhhccc---CCccCCCCCcccccchhhhhhhccCC--cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 193 ~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~--~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+..+++. .+..+..|||||+|||+||++|+.+| .++||||||++||+...+.+.+++++.
T Consensus 361 ~~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L 427 (842)
T 2vf7_A 361 DVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENL 427 (842)
T ss_dssp HHHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred HHHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHH
Confidence 356667765 46788899999999999999999998 599999999999999999999988653
No 150
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=2.1e-08 Score=88.38 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=25.0
Q ss_pred hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+..+++++|+|||+. ||+..+..+.+++++
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEK 160 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHh
Confidence 456899999999999 999999999998875
No 151
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.72 E-value=1.3e-08 Score=88.57 Aligned_cols=32 Identities=28% Similarity=0.256 Sum_probs=28.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G 139 (255)
.+|++++|+|+||+||||+++.|++.+. +++|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~---~~~G 134 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM---LEKH 134 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH---HTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC
Confidence 4799999999999999999999999995 4555
No 152
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.70 E-value=1.6e-08 Score=81.63 Aligned_cols=38 Identities=8% Similarity=0.049 Sum_probs=33.0
Q ss_pred ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.....+|++++.+++++++| ++++|..+..++.+.+.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34567889999999999999 999999999999988765
No 153
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.70 E-value=8e-09 Score=96.46 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=45.7
Q ss_pred cCCCC-CcccccchhhhhhhccCC--cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293 205 YAPSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 205 ~~~~l-S~G~kqrv~la~~l~~~~--~illlDep~~~LD~~~~~~l~~ll~~~ 254 (255)
++..| ||||+||+++|++++.+| ++||+|||+++||+.....+.++|.+.
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~ 445 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL 445 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 34567 999999999999999999 999999999999999999999998753
No 154
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.70 E-value=5.3e-09 Score=85.37 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=35.3
Q ss_pred cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 81 ~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+|++..++... +.+..++..++|++++|+|||||||||++++|++.+
T Consensus 3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45666665522 447888999999999999999999999999999998
No 155
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.65 E-value=1e-08 Score=83.77 Aligned_cols=27 Identities=41% Similarity=0.523 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++|++++|+||||||||||+++|+|++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999999999998
No 156
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.64 E-value=4.1e-09 Score=98.24 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=39.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
+++++++.+++|++++|+|||||||||||++|+|+++ |++|.
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~gi 290 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKV 290 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCE
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCE
Confidence 4589999999999999999999999999999999997 88887
No 157
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.64 E-value=1.3e-08 Score=82.83 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=28.8
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G 139 (255)
++|.+|++++|+|||||||||++++|++.+. |+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence 4678999999999999999999999999885 5444
No 158
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.62 E-value=2.6e-09 Score=96.27 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=26.0
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.+.+|.++||+|+||+|||||+++|+|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5678999999999999999999999994
No 159
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=2.3e-08 Score=81.50 Aligned_cols=36 Identities=33% Similarity=0.358 Sum_probs=25.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++|+||++.+|++++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 669999999999999999999999999999999877
No 160
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.59 E-value=1.8e-08 Score=81.25 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=24.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999984
No 161
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.57 E-value=1.3e-07 Score=76.50 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=30.4
Q ss_pred chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
....|++++..++++++| ++++|..+..++.+.+.+
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 345678888899999999 999999999998887754
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.55 E-value=1.1e-08 Score=86.40 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=40.9
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+++++.+.|+... +++++++.+++| ++|+||||||||||+++|++..
T Consensus 26 ~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 26 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 35677888886532 459999999999 8999999999999999999987
No 163
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.54 E-value=6e-09 Score=90.99 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=27.2
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
+++.+|++++|+||||+|||||+|+|+|+.. |..|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~ 203 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNE 203 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccc
Confidence 7788999999999999999999999999987 88888
No 164
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.54 E-value=1.9e-08 Score=87.59 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=30.7
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
|++..|++++|+||||||||||+|+|+|+.. |++|+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~ 199 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSE 199 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC---
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccc
Confidence 5567899999999999999999999999998 99998
No 165
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.53 E-value=1.3e-08 Score=87.23 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=41.1
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+++++.+.|+... +++++++.+++| ++|+||||||||||+++|++.+
T Consensus 50 ~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 50 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 35677888887632 459999999999 8999999999999999999987
No 166
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.49 E-value=6.7e-08 Score=77.52 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=25.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+|++++|+||||||||||+++|++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999999987
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.48 E-value=7.8e-08 Score=78.34 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.3
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-+..++|++++|+|+||||||||+++|++.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3566789999999999999999999999987
No 168
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.47 E-value=7.2e-08 Score=87.85 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=43.1
Q ss_pred CCCcccccchhhhhhhc----cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 208 ~lS~G~kqrv~la~~l~----~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
.|||||++++++|++|+ .+|+++|||||+++||+..+..+.+++.+
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~ 382 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRR 382 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 48999999999999998 57999999999999999999999999865
No 169
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.45 E-value=9.9e-08 Score=88.58 Aligned_cols=48 Identities=27% Similarity=0.366 Sum_probs=39.5
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+++++.+.|.+. . ++.++++.+++| +.|+||||+|||||+++|++..
T Consensus 41 ~~l~~lv~~l~~~--~--~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 41 EELKEIVEFLKNP--S--RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp HHHHHHHHHHHCG--G--GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhch--h--hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh
Confidence 3456666666552 2 459999999999 8999999999999999999987
No 170
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.45 E-value=4.7e-07 Score=73.88 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=28.6
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++--.+++|.+++|+|++|||||||++.|++.+
T Consensus 12 ~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 12 SGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp --CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3444567899999999999999999999999876
No 171
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.44 E-value=7.2e-08 Score=86.49 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=34.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++++++.+++|++++|+||||||||||+++|+|..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 569999999999999999999999999999999976
No 172
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.44 E-value=3.9e-08 Score=87.07 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=49.0
Q ss_pred CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
.+++.+++.+.|+... +++++++.+.+|.+++|+|+||+|||||++.|++.+. +..|+
T Consensus 29 ~~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~---~~~~~ 86 (341)
T 2p67_A 29 TLVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI---REGLK 86 (341)
T ss_dssp HHHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH---HTTCC
T ss_pred hHhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH---hcCCe
Confidence 3577888898887633 5599999999999999999999999999999999985 55443
No 173
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.42 E-value=1.9e-07 Score=86.25 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=30.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+.++++.+++| +.|+||+|+|||||++.|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 347888888888 7899999999999999999987
No 174
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.41 E-value=1.1e-07 Score=84.93 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=43.0
Q ss_pred cCCCCCcccccch------hhhhhhccC-CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 205 YAPSFDHGVGDPV------EDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 205 ~~~~lS~G~kqrv------~la~~l~~~-~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
++..+|+||+||+ ++|+++..+ |++||+|||+++||+..+..+.+++.+
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~ 332 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK 332 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 3457999999988 456778889 999999999999999999999999865
No 175
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.40 E-value=1.8e-07 Score=85.22 Aligned_cols=49 Identities=16% Similarity=0.338 Sum_probs=38.6
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 138 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~ 138 (255)
-|+++|+ +.|++. .. +++.+|++++|+|||||||||||++|++++. +.+
T Consensus 6 ~l~~~~~-~~~~~~-------~~--~~~~~~~~~~i~G~nG~GKstll~ai~~~~~---~~~ 54 (430)
T 1w1w_A 6 GLELSNF-KSYRGV-------TK--VGFGESNFTSIIGPNGSGKSNMMDAISFVLG---VRS 54 (430)
T ss_dssp EEEEESC-SSCCSE-------EE--EECTTCSEEEEECSTTSSHHHHHHHHHHHTT---C--
T ss_pred EEEEeCE-EEECCc-------ee--EEecCCCEEEEECCCCCCHHHHHHHHHhhhc---ccc
Confidence 4788999 788651 12 4467799999999999999999999999986 554
No 176
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.35 E-value=1.8e-07 Score=75.17 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
|++++|+||||||||||+++|++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 789999999999999999999874
No 177
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.33 E-value=1e-07 Score=80.68 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=29.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHH---HHhcccCCCCCc
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKAS 140 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~---Gll~~~~p~~G~ 140 (255)
.+|++++|+|||||||||++++|+ |+.. +++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~ 60 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGA 60 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCc
Confidence 789999999999999999999999 7665 77777
No 178
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.33 E-value=2.4e-07 Score=75.59 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=27.8
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
...+|++++|+|+||||||||+++|++.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999999985
No 179
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.33 E-value=1.5e-07 Score=78.52 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=28.5
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.+-+...++|++++|.|+||||||||+++|+|.
T Consensus 11 ~~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 11 GTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp -CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 344556789999999999999999999999886
No 180
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.33 E-value=2.5e-07 Score=75.86 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=26.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999884
No 181
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.29 E-value=4.4e-07 Score=71.91 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=25.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+|++++|+|+|||||||++++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 469999999999999999999999976
No 182
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.28 E-value=4.3e-07 Score=79.74 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=35.4
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G 139 (255)
.+++|.+.+|++++|+|+||+||||++..|++.+. +..|
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~ 134 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA---ELGY 134 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH---HTTC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCC
Confidence 68999999999999999999999999999999996 5544
No 183
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.28 E-value=6.6e-07 Score=74.41 Aligned_cols=34 Identities=21% Similarity=0.528 Sum_probs=27.0
Q ss_pred ccc-ccccCCCcEEEEECCCCCcHHHHHHHHH-HHh
Q 025293 98 SAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRI 131 (255)
Q Consensus 98 ~~i-sl~i~~GeivgLiGpNGsGKSTLLk~L~-Gll 131 (255)
+++ .--+++|++++|+||||||||||+..++ +..
T Consensus 13 D~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 13 DEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp HHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444 5568899999999999999999965554 444
No 184
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.24 E-value=4.9e-07 Score=71.34 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.|++++|+|+|||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 468899999999999999999999873
No 185
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.23 E-value=4.3e-07 Score=85.31 Aligned_cols=34 Identities=32% Similarity=0.342 Sum_probs=31.3
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G 139 (255)
.+++|++++|+|+||||||||+++|++.+. |++|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G 398 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGG 398 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCC
Confidence 678999999999999999999999999997 6665
No 186
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.22 E-value=7.4e-07 Score=72.81 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=26.3
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
|+...+|++++|+||||||||||++.|++..
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3445689999999999999999999999987
No 187
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.21 E-value=5.6e-07 Score=80.56 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=45.9
Q ss_pred eEEecCchheehhhhccccccc--------------ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~--------------~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
-++++||+..|... +. .++ |+.+.|.+|+.++|+||+|+|||||++.|++.+.
T Consensus 133 ri~Fe~ltp~yP~e-r~--~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANS-RL--RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCS-BC--CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCC-cc--ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 47889999999762 22 347 8999999999999999999999999999999874
No 188
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.20 E-value=5.4e-07 Score=82.67 Aligned_cols=37 Identities=16% Similarity=0.366 Sum_probs=33.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.|+++..-+++|+++.|.|++|+|||||+..|++...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577777899999999999999999999999999874
No 189
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.16 E-value=4.1e-07 Score=84.53 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=27.9
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 025293 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~G 129 (255)
.+.+.+.++..+.|+|.+||||||+++.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4678888899999999999999999999875
No 190
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.14 E-value=9.5e-07 Score=82.89 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=42.3
Q ss_pred EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+-++++.+.|.... ++.++++++ +|++++|+||||+|||||+++|++.+.
T Consensus 84 ~G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 84 HGLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SSCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44567788886632 568899998 899999999999999999999999984
No 191
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.11 E-value=1.9e-06 Score=67.08 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=24.5
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+++.+| +.+|+|||||||||++..|.-.+
T Consensus 18 ~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 18 VVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 3445444 89999999999999999998655
No 192
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.10 E-value=1.1e-06 Score=76.97 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
=++++|+|+||||||||+|+|.|+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3689999999999999999999985
No 193
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.02 E-value=8.7e-06 Score=72.19 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=26.0
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-+++|+++.|.||||||||||+..++...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999999988888765
No 194
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.01 E-value=3.6e-06 Score=69.23 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=27.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
+.+++|+|++||||||++++|++.+.-.+++.|.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~ 38 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA 38 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcc
Confidence 5789999999999999999999977211156665
No 195
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.99 E-value=4.3e-06 Score=69.73 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=27.2
Q ss_pred ccccccccC---CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 97 TSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 97 l~~isl~i~---~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
|.++|+.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 466666665 899999999999999999999999984
No 196
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.98 E-value=2.8e-06 Score=77.30 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=38.0
Q ss_pred ecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 80 v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.++|++.|+... .+++|. +|++++|+|+|||||||++..|++.+.
T Consensus 79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788887521 677887 899999999999999999999999995
No 197
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.98 E-value=4.6e-06 Score=66.31 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+|++++|+|++||||||++++|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3699999999999999999999999884
No 198
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.98 E-value=2.2e-06 Score=74.36 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=38.6
Q ss_pred ecCchheehhhhcccccccc-cccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 80 v~~lsk~y~~~~~~il~l~~-isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+++.+.|++.. .+ ++++++ |.+++++|+||+||||++..|++.+.
T Consensus 77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456777887521 56 888877 99999999999999999999999985
No 199
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.95 E-value=5.2e-06 Score=81.04 Aligned_cols=46 Identities=9% Similarity=-0.088 Sum_probs=36.1
Q ss_pred ccCCCCCcccccchhhhhhhccCCcEEEEcCCCC-CCChhHHHHHHH
Q 025293 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-FLDGGVWKDVSS 249 (255)
Q Consensus 204 ~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~-~LD~~~~~~l~~ 249 (255)
..+...+.|+.+|..++..++.+++++|+||++. ++|......+..
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~ 232 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLK 232 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHH
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHH
Confidence 3445668999999998888899999999999996 888665444433
No 200
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=2.7e-06 Score=74.79 Aligned_cols=48 Identities=27% Similarity=0.484 Sum_probs=40.3
Q ss_pred cCchheehhhhcccccccccccccCCCcE--EEEECCCCCcHHHHHHHHHHHhc
Q 025293 81 RCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 81 ~~lsk~y~~~~~~il~l~~isl~i~~Gei--vgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
++++..||... +++.++..+..|++ +.|.||+|+||||+++++++.+.
T Consensus 22 ~~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 22 ETLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SSGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 45666776532 45889999999998 99999999999999999999875
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.92 E-value=1.5e-05 Score=72.60 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=25.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
++.+++++|+||+||||++..|++.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999985
No 202
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.89 E-value=1.9e-05 Score=69.89 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCc--EEEEECCCCCcHHHHHHHHHHHhc
Q 025293 106 VKH--IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Ge--ivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+. .+.|.||+|+|||||++.+++.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 456 899999999999999999999884
No 203
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.86 E-value=6.2e-06 Score=66.98 Aligned_cols=21 Identities=48% Similarity=0.705 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~G 129 (255)
+++|+|+|||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999988
No 204
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.85 E-value=9.5e-06 Score=64.95 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.9
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999887
No 205
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.83 E-value=8.3e-06 Score=66.06 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~G 129 (255)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 206
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.83 E-value=9.7e-06 Score=71.85 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=28.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
.++.+++|+|++|||||||++.|+|.+. +..|+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~ 104 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHK 104 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCe
Confidence 3588999999999999999999999886 66554
No 207
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.82 E-value=1.3e-05 Score=65.58 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=25.5
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 100 isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.++.+.+ .+.+|+|||||||||++..|.-.+.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444544 4899999999999999999987664
No 208
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.81 E-value=4.1e-06 Score=78.02 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=31.8
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
++++++++.+| +.+|+|+|||||||||..|..++.
T Consensus 51 ~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp BSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred eeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 37888999999 999999999999999999998863
No 209
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.81 E-value=9.2e-06 Score=72.06 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=33.5
Q ss_pred ecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 025293 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 80 v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~G 129 (255)
++++.+.|+.... ..+|++++++++ .++|+|++|||||||++.|+|
T Consensus 11 l~~~~~~~~~~~~-~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 11 IQRACTALGDHGD-SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp TTTTTTSCSSCCS-SCCC----CCCC---EEEEECBTTSSHHHHHHHHHT
T ss_pred HHHHHHhhCcccc-ccccccccccCC---EEEEECCCCCcHHHHHHHHhC
Confidence 5677788865211 125699999998 899999999999999999999
No 210
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.80 E-value=1.6e-05 Score=70.18 Aligned_cols=114 Identities=16% Similarity=0.097 Sum_probs=68.4
Q ss_pred cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCC
Q 025293 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (255)
Q Consensus 81 ~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~ 160 (255)
..+...|.. |+.+.--+.+|+++.|.|++|+|||||+..++.... ..| ..++.+...
T Consensus 27 ~gi~TG~~~-------LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a----~~g------------~~Vl~fSlE 83 (338)
T 4a1f_A 27 TGIPTGFVQ-------LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL----NDD------------RGVAVFSLE 83 (338)
T ss_dssp CSBCCSCHH-------HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH----HTT------------CEEEEEESS
T ss_pred CcccCCChH-------HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH----HcC------------CeEEEEeCC
Confidence 456655544 255555789999999999999999999998888763 111 111111111
Q ss_pred CCCCccCCcccChHHHHH-hcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCC
Q 025293 161 HLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (255)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~L 239 (255)
++..+....... ..++ ....+ .-..||.++.+|+..|...+.+++++|.|+|...+
T Consensus 84 ------ms~~ql~~Rlls~~~~v----~~~~l-------------~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si 140 (338)
T 4a1f_A 84 ------MSAEQLALRALSDLTSI----NMHDL-------------ESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI 140 (338)
T ss_dssp ------SCHHHHHHHHHHHHHCC----CHHHH-------------HHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH
T ss_pred ------CCHHHHHHHHHHHhhCC----CHHHH-------------hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH
Confidence 121111111100 0111 11111 11368999999999888888888999999987665
Q ss_pred C
Q 025293 240 D 240 (255)
Q Consensus 240 D 240 (255)
+
T Consensus 141 ~ 141 (338)
T 4a1f_A 141 E 141 (338)
T ss_dssp H
T ss_pred H
Confidence 5
No 211
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.78 E-value=1.2e-05 Score=65.40 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=25.9
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
...+|.+++|+||+|||||||.+.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999999876
No 212
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.77 E-value=1.6e-05 Score=64.98 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=28.6
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+.+.+|.+++|+|++||||||+.+.|++.+.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5678899999999999999999999999884
No 213
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.76 E-value=1.9e-05 Score=62.99 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=27.8
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+...+|.++.|+|++||||||+.+.|+..+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4456899999999999999999999999884
No 214
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.74 E-value=5.1e-05 Score=67.20 Aligned_cols=46 Identities=4% Similarity=-0.207 Sum_probs=31.9
Q ss_pred CCCCCcccccchhhhhhhccCCcEEEEc-CCCCCCChhHHHHHHHHHH
Q 025293 206 APSFDHGVGDPVEDDILVGLQHKVVIVD-GNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 206 ~~~lS~G~kqrv~la~~l~~~~~illlD-ep~~~LD~~~~~~l~~ll~ 252 (255)
...+++++++.+. +.....++-++++| ++..++|......+.+.+.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~ 275 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH 275 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHH
Confidence 3456777777665 44444577788999 8888888877766665554
No 215
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.73 E-value=6.3e-06 Score=73.41 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=35.0
Q ss_pred eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+.+.++.+.|++. . ++++++|+| +|+|++|+|||||++.|.|..
T Consensus 17 ~v~~~~l~~~~~~k--~--~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHRK--S--VKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHTH--H--HHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCCe--e--ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 57899999999873 3 448888877 999999999999999998754
No 216
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.73 E-value=2.1e-05 Score=67.72 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=23.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
..+.|.||+|+||||+++.|++.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 6899999999999999999999984
No 217
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.71 E-value=0.0001 Score=61.83 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+--+|+|.|+.||||||+.+.|+..+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998866
No 218
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.68 E-value=2.3e-05 Score=63.46 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999987
No 219
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.68 E-value=1.7e-05 Score=62.46 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+|..++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999999864
No 220
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.65 E-value=3.2e-05 Score=64.32 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.9
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.+|.+++|+|++||||||+.++|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999999865
No 221
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.63 E-value=3.2e-05 Score=61.47 Aligned_cols=27 Identities=41% Similarity=0.704 Sum_probs=23.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 222
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.63 E-value=0.00017 Score=61.66 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++..+.|.||+|+|||||++.|++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46788999999999999999999976
No 223
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.60 E-value=2.2e-05 Score=68.01 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++.+++|+|++|+|||||++.|.|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 345689999999999999999999864
No 224
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.59 E-value=3.4e-05 Score=61.68 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=21.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
+++++++..+.. .++|+|++|+|||||++.+.+-
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 458888888776 7789999999999999999874
No 225
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.54 E-value=4.8e-05 Score=63.84 Aligned_cols=33 Identities=30% Similarity=0.550 Sum_probs=24.7
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.++++.+++| +.|.||+|+|||||++.|++...
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 5556666666 88999999999999999999873
No 226
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.51 E-value=4.1e-05 Score=59.68 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 227
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.50 E-value=6.6e-05 Score=59.93 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=23.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+++|+|++|||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999874
No 228
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.49 E-value=4.3e-05 Score=64.34 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=28.7
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+.. ....+.++.|+|++||||||+.+.|+..+
T Consensus 24 ~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 24 RGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp TTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred ccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4444 67788999999999999999999999987
No 229
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.48 E-value=6.8e-05 Score=58.49 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 230
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.46 E-value=5.1e-05 Score=66.16 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=29.9
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
|+++.--+.+|+++.|.|++|+|||||+..++...
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 36666668999999999999999999998887655
No 231
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.46 E-value=2.3e-05 Score=63.24 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=29.4
Q ss_pred hheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 025293 84 DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 84 sk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~G 129 (255)
+..|++. .. +++++++..+++ .++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~-~~--~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF-SS--VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CH--HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH-HH--HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 3445553 22 458999998887 578999999999999999876
No 232
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.43 E-value=6.1e-05 Score=66.88 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=27.7
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
-+++|+++.|.||+|||||||+..++....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 377999999999999999999999999874
No 233
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.40 E-value=0.0001 Score=60.24 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~G 129 (255)
++-+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 234
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.40 E-value=7.6e-05 Score=58.97 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gl 130 (255)
-.++|+|++|+|||||++.++|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 235
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.34 E-value=8.6e-05 Score=66.14 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=25.7
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~G 129 (255)
++..+++.+| +.+|+|+|||||||+|..|.=
T Consensus 17 ~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4556666664 899999999999999999985
No 236
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.34 E-value=0.00012 Score=61.10 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
..-+++|.||+||||||+.+.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999765
No 237
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.34 E-value=0.00013 Score=57.47 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
|.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999876
No 238
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.34 E-value=0.00014 Score=57.90 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=24.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998765
No 239
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.34 E-value=0.00012 Score=61.61 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=22.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+++|+||+|||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999877
No 240
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.33 E-value=0.00014 Score=58.39 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999976
No 241
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.32 E-value=8e-05 Score=59.03 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 242
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.32 E-value=0.00015 Score=57.45 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
|.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998866
No 243
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.32 E-value=0.00014 Score=57.52 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=24.8
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.++.++.|+|++||||||+.+.|+..+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4567889999999999999999998765
No 244
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.31 E-value=0.00012 Score=57.73 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999877
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.31 E-value=0.00011 Score=71.95 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=28.5
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
|.+.+|+.+.|+||||||||||+++|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999999999873
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.27 E-value=0.00014 Score=56.48 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 025293 109 IVGLAGPPGAGKSTLAAEV 127 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L 127 (255)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 247
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.27 E-value=0.00019 Score=64.60 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.9
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.+..|..++|+|+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567889999999999999999999987
No 248
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.25 E-value=7.4e-05 Score=60.61 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+++|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999883
No 249
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.23 E-value=0.00019 Score=57.53 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
+..+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3568999999999999999999874
No 250
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.23 E-value=0.00021 Score=57.42 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=24.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998764
No 251
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.21 E-value=0.00022 Score=56.55 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999999873
No 252
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.20 E-value=0.00017 Score=69.22 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=27.0
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
++.++++..++|+|+||+|||||++.|++...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 45678999999999999999999999998763
No 253
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.19 E-value=0.00022 Score=61.56 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=27.1
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.+.++..+.|.||+|+|||||++.|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456788999999999999999999999976
No 254
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.19 E-value=0.00024 Score=56.61 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=24.8
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
..++.+++|+|+.||||||+.+.|+..+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999998765
No 255
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.19 E-value=0.00024 Score=57.22 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999976
No 256
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.18 E-value=0.00028 Score=56.89 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999999877
No 257
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.17 E-value=0.00026 Score=56.02 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.++.|+|+.||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998876
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.15 E-value=0.00026 Score=57.02 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 025293 110 VGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 110 vgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999998765
No 259
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.15 E-value=0.00014 Score=58.11 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=26.3
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
...+..+.+++|+|+.||||||+.+.|+..+
T Consensus 6 ~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 6 MEDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3345567899999999999999999998866
No 260
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.15 E-value=0.00028 Score=56.99 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998765
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.15 E-value=0.00024 Score=55.68 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHH
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~G 129 (255)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 262
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.13 E-value=0.00031 Score=55.72 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++.+++|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998755
No 263
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.13 E-value=0.00021 Score=59.22 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 689999999999999999999763
No 264
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.11 E-value=0.00033 Score=56.66 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.8
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|.+++|.|+.||||||+.+.|+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999999765
No 265
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.09 E-value=0.00031 Score=60.33 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=24.7
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
...|.++.|.||+||||||+.+.|+..+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4467899999999999999999998765
No 266
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.06 E-value=0.00024 Score=60.28 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999975
No 267
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.05 E-value=0.00024 Score=56.03 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=19.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 57799999999999999999998765
No 268
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.04 E-value=0.00026 Score=64.37 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+||+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999975
No 269
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.02 E-value=0.00043 Score=55.13 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999877
No 270
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.01 E-value=0.00041 Score=54.91 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++.|.|+.||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999877
No 271
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.00 E-value=0.00026 Score=63.00 Aligned_cols=44 Identities=5% Similarity=-0.152 Sum_probs=30.4
Q ss_pred CCCCCcccccchhhh----hhh-ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293 206 APSFDHGVGDPVEDD----ILV-GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 206 ~~~lS~G~kqrv~la----~~l-~~~~~illlDep~~~LD~~~~~~l~~ll~~ 253 (255)
+..+|+++++++.++ ..+ ..++++ +|++++|..+...+.+.|.+
T Consensus 302 ~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 302 IDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 345677777776665 444 323343 78999999999998888765
No 272
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.00 E-value=0.00079 Score=59.25 Aligned_cols=24 Identities=29% Similarity=0.699 Sum_probs=22.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999877
No 273
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.00 E-value=0.00051 Score=56.13 Aligned_cols=26 Identities=42% Similarity=0.603 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 57789999999999999999998866
No 274
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.93 E-value=0.00067 Score=54.54 Aligned_cols=27 Identities=41% Similarity=0.636 Sum_probs=23.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
..+.+++|+|+.||||||+.+.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 275
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.00055 Score=54.17 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.-.++|+|+.|+|||||++.+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999864
No 276
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.92 E-value=0.0068 Score=55.18 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998884
No 277
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.90 E-value=0.00049 Score=56.56 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=22.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998654
No 278
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.89 E-value=0.00065 Score=54.61 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=23.7
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.+..+++|.|+.||||||+.+.|+..+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999998654
No 279
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.88 E-value=0.00073 Score=53.44 Aligned_cols=25 Identities=40% Similarity=0.662 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.+++|.|+.||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 280
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.88 E-value=0.00037 Score=57.75 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=24.1
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
-.+..|+.++|.||+||||||++.++...
T Consensus 71 ~~i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 71 EAISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 34567999999999999999998877643
No 281
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.87 E-value=0.00066 Score=55.10 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997765
No 282
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.87 E-value=0.0007 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 283
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.86 E-value=0.0006 Score=53.16 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999876
No 284
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.85 E-value=0.00037 Score=60.00 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=20.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++-++||.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 285
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.85 E-value=0.00079 Score=52.46 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 286
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.84 E-value=0.00061 Score=55.74 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998766
No 287
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.84 E-value=0.0008 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998866
No 288
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.83 E-value=0.00073 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998854
No 289
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.82 E-value=0.00074 Score=60.28 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=26.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~ 140 (255)
.+..++|+|++|||||||++.|++... +..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~ 65 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSR 65 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCE
Confidence 567789999999999999999999875 55554
No 290
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.82 E-value=0.00078 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998853
No 291
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.81 E-value=0.00081 Score=59.18 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=26.7
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-+++|+++.|.||+|+|||||+..++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999999863
No 292
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.81 E-value=0.00064 Score=53.77 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998876
No 293
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.81 E-value=0.00075 Score=56.90 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999875
No 294
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.80 E-value=0.00055 Score=58.38 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999853
No 295
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.79 E-value=0.00072 Score=54.95 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997654
No 296
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.79 E-value=0.00074 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 297
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.78 E-value=0.00088 Score=51.13 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999988753
No 298
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.77 E-value=0.00088 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 299
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.76 E-value=0.00091 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 300
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.76 E-value=0.00092 Score=51.33 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998864
No 301
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.75 E-value=0.00082 Score=54.29 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.-++||+|+.||||||+.+.|+..+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 302
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.75 E-value=0.00094 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 303
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.74 E-value=0.00077 Score=59.05 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=25.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999999999874
No 304
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.73 E-value=0.0011 Score=54.04 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999998873
No 305
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.73 E-value=0.0022 Score=55.77 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999998765
No 306
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.72 E-value=0.00096 Score=51.79 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45679999999999999999998743
No 307
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.72 E-value=0.00099 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 308
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.72 E-value=0.001 Score=50.96 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 309
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.71 E-value=0.0012 Score=55.07 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=24.4
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
..++-+++|.|+.||||||+.+.|+..+
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999998654
No 310
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.71 E-value=0.001 Score=51.59 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 311
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.71 E-value=0.00085 Score=51.56 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 312
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.70 E-value=0.00094 Score=51.29 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 313
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.69 E-value=0.0008 Score=52.04 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 314
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.69 E-value=0.00097 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998853
No 315
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.65 E-value=0.0012 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998854
No 316
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.65 E-value=0.00057 Score=53.92 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 317
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.65 E-value=0.0012 Score=50.57 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 318
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.65 E-value=0.00089 Score=51.53 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999997643
No 319
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.64 E-value=0.0013 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998755
No 320
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.64 E-value=0.0011 Score=56.71 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~G 129 (255)
+..+|+|+|+.||||||+.+.|+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999984
No 321
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.64 E-value=0.0012 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 322
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.63 E-value=0.0012 Score=52.04 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999999864
No 323
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.63 E-value=0.0012 Score=51.73 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 324
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.62 E-value=0.0012 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999865
No 325
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.62 E-value=0.0022 Score=56.07 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999876
No 326
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.62 E-value=0.0013 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gl 130 (255)
-.++|+|++|+|||||++.+.+-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999877664
No 327
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.61 E-value=0.00064 Score=52.20 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999987643
No 328
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.61 E-value=0.00087 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 378999999999999999998753
No 329
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.60 E-value=0.0013 Score=50.21 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 330
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.60 E-value=0.00088 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
--.++|+|+.|+|||||++.+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999875
No 331
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.60 E-value=0.001 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.|+|+|..|+|||||++.|.|..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999999864
No 332
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.60 E-value=0.0012 Score=54.79 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=22.6
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
..+|.++.|.|+.||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999998773
No 333
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.60 E-value=0.0016 Score=50.06 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999997743
No 334
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.59 E-value=0.0014 Score=51.18 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 368999999999999999998753
No 335
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.59 E-value=0.0013 Score=58.44 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
|..++|+|.+|+|||||++.|++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999984
No 336
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.59 E-value=0.0014 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 337
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.58 E-value=0.0023 Score=56.22 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++.++.|+||.|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46789999999999999999998766
No 338
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.58 E-value=0.0014 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 339
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.57 E-value=0.0016 Score=52.23 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999873
No 340
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.57 E-value=0.0017 Score=53.34 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999998873
No 341
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.56 E-value=0.0013 Score=53.62 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 342
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.56 E-value=0.0013 Score=50.90 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 343
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.0015 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998754
No 344
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.55 E-value=0.00086 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
No 345
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.0011 Score=57.64 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=26.6
Q ss_pred cccccccCCC--cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 98 SALASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 98 ~~isl~i~~G--eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.+...+..| ..+.|.||+|+||||+++.+++.+
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444445455 348999999999999999999986
No 346
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.53 E-value=0.0013 Score=58.65 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999975
No 347
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.53 E-value=0.0014 Score=53.33 Aligned_cols=25 Identities=40% Similarity=0.607 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998865
No 348
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.53 E-value=0.00071 Score=66.27 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=29.6
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 100 isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.++.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356778899999999999999999999999984
No 349
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.52 E-value=0.0014 Score=50.86 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 350
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.52 E-value=0.001 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
No 351
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.52 E-value=0.0016 Score=50.58 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 352
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.50 E-value=0.0016 Score=52.62 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999865
No 353
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.50 E-value=0.0017 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998854
No 354
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.50 E-value=0.0036 Score=54.40 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
..++.|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999998876
No 355
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.50 E-value=0.0015 Score=51.10 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
No 356
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.50 E-value=0.0015 Score=51.36 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998853
No 357
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.49 E-value=0.0018 Score=54.12 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+|.++.|.|++||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999998773
No 358
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.49 E-value=0.0017 Score=51.81 Aligned_cols=22 Identities=45% Similarity=0.434 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.++|+|.+|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 359
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.49 E-value=0.00077 Score=54.61 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+.|.||.|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999998773
No 360
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.49 E-value=0.0017 Score=50.70 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 361
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.48 E-value=0.0017 Score=51.69 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 362
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.48 E-value=0.0013 Score=56.80 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++|+|.+|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999853
No 363
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.48 E-value=0.0017 Score=52.82 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 364
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.48 E-value=0.0017 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998854
No 365
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.48 E-value=0.0017 Score=51.15 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998854
No 366
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.47 E-value=0.0012 Score=55.55 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|..|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 367
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.47 E-value=0.0017 Score=59.46 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=27.7
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+.+-+|+.++|+|++|+|||||++.|+....
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 5667899999999999999999999988763
No 368
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0017 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 369
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.46 E-value=0.0019 Score=54.62 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=24.8
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+..+.-+.|.||.|+|||||++.|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566779999999999999999999887
No 370
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.45 E-value=0.0024 Score=49.72 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998873
No 371
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.45 E-value=0.002 Score=53.05 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=26.2
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+-.+.+..++.|+||.||||+|..+.|+-.+
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456678899999999999999999998765
No 372
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.45 E-value=0.0015 Score=56.89 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=26.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-+++|+++.|.|++|+|||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 57899999999999999999999998764
No 373
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.45 E-value=0.0023 Score=52.74 Aligned_cols=26 Identities=38% Similarity=0.566 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 374
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.44 E-value=0.0019 Score=50.33 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 375
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.43 E-value=0.0021 Score=52.77 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+|.++.|-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998874
No 376
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0018 Score=51.27 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Confidence 468999999999999999998843
No 377
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.42 E-value=0.0018 Score=52.52 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
--+++|+|+.|+|||||++.|++..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999875
No 378
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.41 E-value=0.0018 Score=51.20 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999999865
No 379
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.40 E-value=0.0021 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 380
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.40 E-value=0.0018 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34568999999999999999999854
No 381
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.40 E-value=0.0018 Score=52.07 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=25.2
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++.|.-..--.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 5555554445579999999999999999998843
No 382
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.40 E-value=0.0021 Score=50.63 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998743
No 383
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.39 E-value=0.0016 Score=56.37 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-+|+|+|..|+|||||++.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 478999999999999999999853
No 384
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.39 E-value=0.0019 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 385
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.39 E-value=0.0019 Score=52.08 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999988754
No 386
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.37 E-value=0.0019 Score=55.15 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 387
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.37 E-value=0.0027 Score=52.50 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=25.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+|.++.|.|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999998773
No 388
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.37 E-value=0.0016 Score=54.52 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.|+|+|+.|+|||||++.|.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 389
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.36 E-value=0.0022 Score=50.74 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998854
No 390
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.36 E-value=0.0018 Score=54.62 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|..|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 391
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.36 E-value=0.0022 Score=53.20 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+|.+++|.|+.||||||+++.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999876
No 392
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.36 E-value=0.0023 Score=50.56 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998754
No 393
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.35 E-value=0.0019 Score=55.93 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+..+.|.||+|+|||||++.|+..+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 346788999999999999999999873
No 394
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.34 E-value=0.0026 Score=49.41 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
--.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 395
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0024 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998753
No 396
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.0024 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 397
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.33 E-value=0.0024 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578999999999999999998753
No 398
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.33 E-value=0.0015 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHH
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~G 129 (255)
++.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999998874
No 399
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.33 E-value=0.0011 Score=53.10 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gl 130 (255)
-.++|+|++|+|||||++.+.|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999998764
No 400
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.32 E-value=0.0027 Score=52.20 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=25.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999884
No 401
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.31 E-value=0.0018 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 402
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.30 E-value=0.001 Score=55.79 Aligned_cols=33 Identities=36% Similarity=0.586 Sum_probs=26.2
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.++.+....| +.|.||+|+|||||++.|+....
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 4444555556 77999999999999999999763
No 403
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.30 E-value=0.0017 Score=50.92 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999998764
No 404
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.30 E-value=0.0023 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998854
No 405
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.29 E-value=0.0023 Score=57.75 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=24.9
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.-.++.++.|+|++||||||+.+.|+..+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 334567899999999999999999987654
No 406
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.29 E-value=0.0026 Score=50.99 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
..-.++|+|+.|+|||||++.+.+..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999999998753
No 407
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.28 E-value=0.0021 Score=51.19 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 408
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.28 E-value=0.0023 Score=51.63 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999853
No 409
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.28 E-value=0.0027 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 368999999999999999888753
No 410
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.28 E-value=0.0019 Score=54.91 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|..|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 411
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.0021 Score=50.59 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999853
No 412
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.23 E-value=0.0029 Score=50.94 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 413
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.22 E-value=0.0057 Score=54.97 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=22.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+++|+||+|||||||.+.|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999999877
No 414
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.19 E-value=0.0021 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998864
No 415
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.19 E-value=0.0016 Score=55.18 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.++|+|..|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998764
No 416
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.19 E-value=0.0022 Score=58.29 Aligned_cols=31 Identities=39% Similarity=0.564 Sum_probs=25.8
Q ss_pred cccCCC--cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 102 SNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 102 l~i~~G--eivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
|.+.++ .+++|+|++|+||||++..|++.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444434 5999999999999999999999873
No 417
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.19 E-value=0.0027 Score=57.76 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+..+.|.||+|+|||||++.|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999873
No 418
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.18 E-value=0.002 Score=50.54 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 419
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.17 E-value=0.0031 Score=49.10 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356778999999999999999998873
No 420
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.17 E-value=0.0029 Score=50.54 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998854
No 421
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.15 E-value=0.001 Score=53.86 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.-.++|+|+.|+|||||++.|.|..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998853
No 422
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.15 E-value=0.0043 Score=51.55 Aligned_cols=27 Identities=41% Similarity=0.568 Sum_probs=23.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
....-+.|.||.|+|||||++.++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344557899999999999999999977
No 423
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.15 E-value=0.0032 Score=51.20 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=24.9
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
...-+.+ .|..+.|+||+|+|||||...|+..
T Consensus 26 Ha~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 26 HGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4444444 5788999999999999998877653
No 424
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.15 E-value=0.0022 Score=52.42 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.-.++|+|+.|+|||||++.+.+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998753
No 425
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.14 E-value=0.0024 Score=54.90 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|..|+|||||++.|+|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999863
No 426
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.12 E-value=0.002 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987643
No 427
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.12 E-value=0.0027 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 428
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.12 E-value=0.0015 Score=51.56 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.-.++|+|+.|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998765
No 429
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0033 Score=49.68 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 430
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.12 E-value=0.0031 Score=51.22 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
--+++|+|..|+|||||++.++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998775
No 431
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.12 E-value=0.0021 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.-.++|+|+.|+|||||++.+.+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999987643
No 432
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.09 E-value=0.0043 Score=50.48 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
|.+|+|=|+.||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998873
No 433
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.09 E-value=0.0035 Score=54.54 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=28.1
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 025293 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~G 129 (255)
.+++..+.+ .|.-+.|+|++|+|||||...|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 446777777 688899999999999999998877
No 434
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.09 E-value=0.0018 Score=54.48 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++.+|+|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 478899999999999999999988765
No 435
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.09 E-value=0.002 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=9.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999988653
No 436
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.08 E-value=0.003 Score=54.78 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.4
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
-+++|+++.|.|++|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988864
No 437
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.07 E-value=0.0029 Score=50.32 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=20.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998864
No 438
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.06 E-value=0.0027 Score=50.54 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|..|+|||||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999888754
No 439
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.05 E-value=0.0027 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gl 130 (255)
-.++|+|+.|+|||||++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 440
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.02 E-value=0.0038 Score=49.95 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 68999999999999999998743
No 441
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.0033 Score=51.32 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gl 130 (255)
-.++|+|.+|+|||||++.+.|.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998863
No 442
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.98 E-value=0.0033 Score=52.90 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|..|+|||||++.|.|..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
No 443
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.96 E-value=0.0042 Score=49.85 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.-.++|+|+.|+|||||++.+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999988864
No 444
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.96 E-value=0.0033 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
..++|+|.+|+|||||++.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 589999999999999999999865
No 445
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.96 E-value=0.02 Score=47.42 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=20.4
Q ss_pred CCcE-EEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHI-VGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Gei-vgLiGpNGsGKSTLLk~L~Gll 131 (255)
+|.. +.+.|+.|+||||++-.++..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 5654 7789999999999966666555
No 446
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.0048 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 447
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.94 E-value=0.0047 Score=50.01 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.-.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
No 448
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.93 E-value=0.0046 Score=50.43 Aligned_cols=23 Identities=43% Similarity=0.732 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++.|+||.||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998765
No 449
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.93 E-value=0.0032 Score=53.55 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|..|+|||||++.|.|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999864
No 450
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.91 E-value=0.0035 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++++|+.|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 451
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.86 E-value=0.0051 Score=50.52 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.7
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHH
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVV 128 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~ 128 (255)
-+++|+++.|.|+.|+|||||+--++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 37799999999999999999986554
No 452
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.83 E-value=0.0056 Score=54.17 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=25.6
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+++|+++.|.|++|+|||||...++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7799999999999999999998888765
No 453
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.83 E-value=0.002 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=4.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gl 130 (255)
-.++|+|+.|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998876
No 454
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.81 E-value=0.0053 Score=49.26 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998743
No 455
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.80 E-value=0.0069 Score=53.36 Aligned_cols=27 Identities=37% Similarity=0.576 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+.-+++|+|+.|+|||||++.|++.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 355689999999999999999999887
No 456
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.74 E-value=0.0018 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988753
No 457
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.72 E-value=0.0063 Score=48.53 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCCcHHHHH-HHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLA-AEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLL-k~L~Gll 131 (255)
+|.++.|.||.|+||||++ +++....
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4889999999999999997 5554443
No 458
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.69 E-value=0.0064 Score=48.25 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~G 129 (255)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 455799999999999999998864
No 459
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.66 E-value=0.0033 Score=57.33 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-+++|+|.+|+|||||++.|+|..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999998853
No 460
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.64 E-value=0.006 Score=53.37 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
..+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998773
No 461
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.63 E-value=0.0076 Score=48.00 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999998876
No 462
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.62 E-value=0.0033 Score=57.39 Aligned_cols=31 Identities=42% Similarity=0.652 Sum_probs=24.9
Q ss_pred cccCCCc--EEEEECCCCCcHHHHHHHHHHHhc
Q 025293 102 SNVNVKH--IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 102 l~i~~Ge--ivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
-.+..|. .+.|.||.|+|||||++.|+....
T Consensus 43 ~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 43 RAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3344454 488999999999999999999873
No 463
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.58 E-value=0.0088 Score=51.00 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+..+.|.||.|+|||||++.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999999998873
No 464
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.53 E-value=0.0095 Score=50.99 Aligned_cols=27 Identities=37% Similarity=0.537 Sum_probs=23.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+..-.+.|.||.|+|||+|.+.|+..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344567888999999999999999987
No 465
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.53 E-value=0.0094 Score=53.37 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=29.1
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
|.=+.|-+|+..+|+|+.|+|||||+..|+...
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 444678899999999999999999999888865
No 466
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.53 E-value=0.0082 Score=45.65 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
..+.-+.|.||.|+|||++.+.|....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 455668899999999999999998865
No 467
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.52 E-value=0.0048 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~G 129 (255)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445799999999999999998854
No 468
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.52 E-value=0.021 Score=56.22 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
..+.|.||+|+|||++.+.|+..+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4788999999999999999999883
No 469
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.51 E-value=0.0098 Score=49.36 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-.+||+|+.||||||+.+.|+-.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998765
No 470
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.50 E-value=0.0071 Score=54.97 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=29.3
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5555458899999999999999999999888866
No 471
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.48 E-value=0.0084 Score=47.66 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~G 129 (255)
.|.-+.|.|++|+|||||...+..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 578899999999999999876654
No 472
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.44 E-value=0.006 Score=49.38 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHH-HHHHh
Q 025293 108 HIVGLAGPPGAGKSTLAAE-VVRRI 131 (255)
Q Consensus 108 eivgLiGpNGsGKSTLLk~-L~Gll 131 (255)
-.++|+|+.|+|||||++. +.|..
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3589999999999999998 66654
No 473
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.41 E-value=0.011 Score=51.25 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=23.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+..-+.|.||.|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345678899999999999999999876
No 474
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.31 E-value=0.0092 Score=50.99 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+-.++|+|.+|+|||||++.|.|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34579999999999999999999854
No 475
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.26 E-value=0.0089 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998765
No 476
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.24 E-value=0.012 Score=49.91 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+.-+.|.||.|+|||||++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678999999999999999999873
No 477
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.24 E-value=0.013 Score=55.09 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=24.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
++|.++.|.|.+||||||+.+.|.-.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999876
No 478
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.22 E-value=0.008 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|..++|||||++.|+|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999998854
No 479
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.20 E-value=0.0072 Score=55.37 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.|-.++|+|+.|+|||||++.|+|..
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 346679999999999999999999974
No 480
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.20 E-value=0.012 Score=51.79 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+.-+.|.||+|+||||+.+.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999999876
No 481
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.18 E-value=0.012 Score=54.59 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=26.3
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+.|.++.|+|.+||||||+-+.|+..+.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999983
No 482
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.18 E-value=0.0034 Score=50.14 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 346899999999999999888753
No 483
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.14 E-value=0.014 Score=55.42 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+|.+|.|+|.+||||||+.+.|+-.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999877
No 484
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.13 E-value=0.014 Score=51.06 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+..+.|.||.|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 485
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.13 E-value=0.016 Score=53.67 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+..+++|+|++|+||||++..|+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999997763
No 486
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.12 E-value=0.014 Score=47.77 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.5
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+++.-.+.|.||.|+||||+...|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 66666789999999999999999999883
No 487
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.12 E-value=0.016 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=23.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
....-+.|.||.|+|||||++.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999999876
No 488
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.07 E-value=0.014 Score=51.02 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=24.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
.+|..+.|.||.|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999999883
No 489
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.05 E-value=0.016 Score=48.72 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
....-+.|.||.|+|||||++.|+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345678899999999999999999876
No 490
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.05 E-value=0.011 Score=51.54 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
-+.+|.++.|.||.|+|||||...++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4677888899999999999999988764
No 491
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.01 E-value=0.017 Score=49.81 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+.-+.|.||.|+|||+|++.|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
No 492
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.97 E-value=0.0077 Score=54.57 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.++|+|..|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 493
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.97 E-value=0.019 Score=49.67 Aligned_cols=26 Identities=42% Similarity=0.540 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
+..-+.|.||.|+|||||++.|+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 44568899999999999999999876
No 494
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.95 E-value=0.019 Score=46.32 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+|+|=|+-||||||.++.|...+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578889999999999999998874
No 495
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.94 E-value=0.014 Score=51.79 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gl 130 (255)
++..++++|..|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999997
No 496
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.82 E-value=0.017 Score=49.96 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 025293 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 ivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.+.|.||.|+|||||++.|+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 57899999999999999998876
No 497
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.81 E-value=0.015 Score=51.64 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=25.2
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
-+++|+++.|.|+.|+|||||+..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 36799999999999999999997777654
No 498
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.79 E-value=0.021 Score=52.23 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
...++.++|.+||||||+.+.|+..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998765
No 499
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.023 Score=51.45 Aligned_cols=29 Identities=34% Similarity=0.541 Sum_probs=24.2
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~ 132 (255)
+.+..=+.|.||.|+|||+|.+.|++...
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44444588999999999999999999873
No 500
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.74 E-value=0.012 Score=54.95 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~GeivgLiGpNGsGKSTLLk~L~Gll 131 (255)
.--+|+|+|..|+|||||++.|.|..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999999864
Done!