Your job contains 1 sequence.
>025294
MLSFSSLRKATSLLRYNGAFNRPLSADFAGYFENEKRHFCSSWNVARGESGRSLPRVLGN
LGMNLCAVSVEQNVAAPYALGFRNFIHSTGQGDDETGRSSRPMDFVRGIVEEDEKRFTGP
SQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYA
AEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTT
RRPHNGCRLPKKRRI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025294
(255 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2826195 - symbol:NFD3 "NUCLEAR FUSION DEFECTIV... 535 1.5e-51 1
UNIPROTKB|P46746 - symbol:RPS11 "Ribosomal protein S11, m... 194 2.0e-15 1
TIGR_CMR|CBU_0261 - symbol:CBU_0261 "ribosomal protein S1... 174 2.7e-13 1
UNIPROTKB|O06326 - symbol:rpsK "30S ribosomal protein S11... 171 5.6e-13 1
TIGR_CMR|SO_0254 - symbol:SO_0254 "ribosomal protein S11"... 169 9.1e-13 1
TIGR_CMR|CPS_0624 - symbol:CPS_0624 "ribosomal protein S1... 168 1.2e-12 1
TIGR_CMR|ECH_0431 - symbol:ECH_0431 "ribosomal protein S1... 167 1.5e-12 1
UNIPROTKB|P66367 - symbol:rpsK "30S ribosomal protein S11... 165 2.4e-12 1
TIGR_CMR|VC_2573 - symbol:VC_2573 "ribosomal protein S11"... 165 2.4e-12 1
TIGR_CMR|CHY_2283 - symbol:CHY_2283 "ribosomal protein S1... 164 3.1e-12 1
TIGR_CMR|GSU_2833 - symbol:GSU_2833 "ribosomal protein S1... 164 3.1e-12 1
TIGR_CMR|BA_0136 - symbol:BA_0136 "ribosomal protein S11"... 162 5.3e-12 1
TIGR_CMR|DET_0500 - symbol:DET_0500 "ribosomal protein S1... 159 1.2e-11 1
TIGR_CMR|CJE_1765 - symbol:CJE_1765 "ribosomal protein S1... 157 2.1e-11 1
UNIPROTKB|P0A7R9 - symbol:rpsK species:83333 "Escherichia... 153 6.4e-11 1
TIGR_CMR|SPO_0510 - symbol:SPO_0510 "ribosomal protein S1... 152 8.3e-11 1
TIGR_CMR|APH_0302 - symbol:APH_0302 "ribosomal protein S1... 151 1.1e-10 1
UNIPROTKB|P0C462 - symbol:rps11 "30S ribosomal protein S1... 142 1.2e-09 1
UNIPROTKB|P0C463 - symbol:rps11 "30S ribosomal protein S1... 142 1.2e-09 1
UNIPROTKB|P0C464 - symbol:rps11 "30S ribosomal protein S1... 142 1.2e-09 1
UNIPROTKB|Q6ENE1 - symbol:rps11 "30S ribosomal protein S1... 142 1.2e-09 1
TIGR_CMR|NSE_0288 - symbol:NSE_0288 "ribosomal protein S1... 141 1.6e-09 1
FB|FBgn0038474 - symbol:mRpS11 "mitochondrial ribosomal p... 112 0.00015 1
>TAIR|locus:2826195 [details] [associations]
symbol:NFD3 "NUCLEAR FUSION DEFECTIVE 3" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001971 Pfam:PF00411
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.30.420.80 PANTHER:PTHR11759 eggNOG:COG0100
EMBL:AY063845 EMBL:AY117289 IPI:IPI00528174 RefSeq:NP_564385.1
UniGene:At.24108 ProteinModelPortal:Q8VZT8 SMR:Q8VZT8 IntAct:Q8VZT8
STRING:Q8VZT8 PaxDb:Q8VZT8 PRIDE:Q8VZT8 EnsemblPlants:AT1G31817.1
GeneID:840071 KEGG:ath:AT1G31817 TAIR:At1g31817
HOGENOM:HOG000150657 InParanoid:Q8VZT8 OMA:RRTAGIF PhylomeDB:Q8VZT8
ProtClustDB:CLSN2914927 ArrayExpress:Q8VZT8 Genevestigator:Q8VZT8
Uniprot:Q8VZT8
Length = 314
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 109/212 (51%), Positives = 146/212 (68%)
Query: 47 RGESGRSLPRVLGNLGMNLCAVSVEQNVAAPYALGFRNFIHSTG--QGDDETGRSSRPMD 104
R SLP G L +AP + NF S+ + + +G S +D
Sbjct: 106 RSRLPNSLPDQFGQTNPGLPNTG-GSGFSAPSLSSYENFTQSSSLLKENSRSGGKSSDLD 164
Query: 105 FVRGIVEEDEKRFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASS 164
FVR ++E++ +R G F F R N+E +++ +HIK++RNNTFVTVTDSKGN + A+S
Sbjct: 165 FVREVIEDEGRRTAGI--FSHFQRPNLETNADIIHIKMLRNNTFVTVTDSKGNVKCKATS 222
Query: 165 GCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGF 224
G LP+LKGG KM+ Y A+ATAE++GR A+ MGLKSVVV+V GFT+F KK++AI++FR+GF
Sbjct: 223 GSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGKKKKAIIAFRDGF 282
Query: 225 ANSR-DQNPIVYIEDTTRRPHNGCRLPKKRRI 255
NSR DQNPIVYIEDTTR+ HNGCRLP+KRR+
Sbjct: 283 TNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314
>UNIPROTKB|P46746 [details] [associations]
symbol:RPS11 "Ribosomal protein S11, mitochondrial"
species:3111 "Prototheca wickerhamii" [GO:0005763 "mitochondrial
small ribosomal subunit" evidence=ISS] InterPro:IPR001971
InterPro:IPR019981 Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0006412
GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.420.80 HAMAP:MF_01310
InterPro:IPR018102 PANTHER:PTHR11759 PROSITE:PS00054 EMBL:U02970
PIR:T11926 RefSeq:NP_042257.1 ProteinModelPortal:P46746
GeneID:802140 Uniprot:P46746
Length = 128
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 51/132 (38%), Positives = 72/132 (54%)
Query: 125 QFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEAT 184
Q R +E S VHI+ NNT +T+TD +GN + S+G L K K + YA+ A
Sbjct: 7 QISRKFIEKKSGIVHIQSTTNNTLITLTDLEGNTQFFVSAGTLG-FKNSRKSTVYASGAA 65
Query: 185 AEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIV-YIEDTTRRP 243
AE + A N G ++++V++KG Y KK AI G S N ++ I++ T
Sbjct: 66 AEALASKAFNEGYRTIIVKIKGLGYGKKS--AI----RGLQKS---NLVIKQIQEVTPIA 116
Query: 244 HNGCRLPKKRRI 255
HNGCR PKKRR+
Sbjct: 117 HNGCRPPKKRRV 128
>TIGR_CMR|CBU_0261 [details] [associations]
symbol:CBU_0261 "ribosomal protein S11" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:NP_819305.1 ProteinModelPortal:Q83EQ4 SMR:Q83EQ4
GeneID:1208142 KEGG:cbu:CBU_0261 PATRIC:17929215
BioCyc:CBUR227377:GJ7S-268-MONOMER Uniprot:Q83EQ4
Length = 123
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 46/118 (38%), Positives = 63/118 (53%)
Query: 139 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLAR-NMGL 197
HIK NNT ++V+D +GN S+G KG K + Y A+ +E VGRLAR N +
Sbjct: 15 HIKATFNNTMISVSDPQGNVLCFRSAGG-SGFKGSRKGTPYGAQMASEEVGRLARDNFDM 73
Query: 198 KSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+ + VRVKG + AI R ++++ED T PHNGCR KKRR+
Sbjct: 74 RRIAVRVKGPG--AGRDSAIRGLRSAGLE------VIHLEDRTPLPHNGCRPRKKRRV 123
>UNIPROTKB|O06326 [details] [associations]
symbol:rpsK "30S ribosomal protein S11" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR001971
InterPro:IPR019981 Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0005886
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842583 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 Gene3D:3.30.420.80 HAMAP:MF_01310
InterPro:IPR018102 PANTHER:PTHR11759 PROSITE:PS00054
HOGENOM:HOG000111597 KO:K02948 eggNOG:COG0100 ProtClustDB:PRK05309
TIGRFAMs:TIGR03632 OMA:PHNGCRR PIR:H70565 RefSeq:NP_217976.1
RefSeq:NP_338091.1 RefSeq:YP_006516948.1 ProteinModelPortal:O06326
SMR:O06326 PRIDE:O06326 EnsemblBacteria:EBMYCT00000002698
EnsemblBacteria:EBMYCT00000070198 GeneID:13317066 GeneID:887524
GeneID:922944 KEGG:mtc:MT3566 KEGG:mtu:Rv3459c KEGG:mtv:RVBD_3459c
PATRIC:18129569 TubercuList:Rv3459c Uniprot:O06326
Length = 139
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 49/126 (38%), Positives = 67/126 (53%)
Query: 130 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVG 189
NV H + HIK NNT VT+TD +GN ASSG + KG K + +AA+ AE+
Sbjct: 25 NVPHGA--AHIKSTFNNTIVTITDPQGNVIAWASSGHVG-FKGSRKSTPFAAQLAAENAA 81
Query: 190 RLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRL 249
R A++ G++ V V VKG + AI S + + I D T +PHNG R
Sbjct: 82 RKAQDHGVRKVDVFVKGPG--SGRETAIRSLQAAGLE------VGAISDVTPQPHNGVRP 133
Query: 250 PKKRRI 255
PK+RR+
Sbjct: 134 PKRRRV 139
>TIGR_CMR|SO_0254 [details] [associations]
symbol:SO_0254 "ribosomal protein S11" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:NP_715894.1 ProteinModelPortal:P59375 SMR:P59375
PRIDE:P59375 GeneID:1168137 KEGG:son:SO_0254 PATRIC:23520201
Uniprot:P59375
Length = 130
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 50/132 (37%), Positives = 66/132 (50%)
Query: 127 PRYNVEH--SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEAT 184
PR V + HI NNT VT+TD +GN A+SG +G K + +AA+
Sbjct: 9 PRKRVRKQVADGMAHIHASFNNTIVTITDRQGNALSWATSGG-SGFRGSRKSTPFAAQVA 67
Query: 185 AEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRP 243
AE G A++ GLK++ V VKG + AI + G+ I I D T P
Sbjct: 68 AERAGAAAQDYGLKNLEVFVKGPG--PGRESAIRALNAVGYK-------ITNITDVTPIP 118
Query: 244 HNGCRLPKKRRI 255
HNGCR PKKRR+
Sbjct: 119 HNGCRPPKKRRV 130
>TIGR_CMR|CPS_0624 [details] [associations]
symbol:CPS_0624 "ribosomal protein S11" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=ISS]
InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:YP_267374.1 ProteinModelPortal:Q488Z0 SMR:Q488Z0
STRING:Q488Z0 GeneID:3518852 KEGG:cps:CPS_0624 PATRIC:21464575
BioCyc:CPSY167879:GI48-711-MONOMER Uniprot:Q488Z0
Length = 129
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 46/118 (38%), Positives = 62/118 (52%)
Query: 139 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLK 198
HI NNT VT+TD +GN A++G +G K + +AA+ A+ G +A+ GLK
Sbjct: 22 HIHASFNNTIVTLTDRQGNALSWATAGG-SGFRGSRKSTPFAAQVAADRAGAVAKEFGLK 80
Query: 199 SVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
++ V VKG + AI + GF I I D T PHNGCR PKKRR+
Sbjct: 81 NIEVFVKGPG--PGRESAIRALNAAGFK-------ITNITDVTPIPHNGCRPPKKRRV 129
>TIGR_CMR|ECH_0431 [details] [associations]
symbol:ECH_0431 "ribosomal protein S11" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0015935 "small ribosomal
subunit" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.420.80 HAMAP:MF_01310 PANTHER:PTHR11759
PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948 eggNOG:COG0100
ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:YP_507249.1 ProteinModelPortal:Q2GH34 STRING:Q2GH34
GeneID:3926965 KEGG:ech:ECH_0431 PATRIC:20576339
BioCyc:ECHA205920:GJNR-432-MONOMER Uniprot:Q2GH34
Length = 126
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 44/119 (36%), Positives = 64/119 (53%)
Query: 138 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEH-VGRLARNMG 196
V+I NN VTVTD +G+ I S+G KG K + YAA+ TA H V + G
Sbjct: 17 VYIHATYNNIIVTVTDQQGHSLICTSAGACG-FKGSKKATPYAAQETASHAVKTVVEQNG 75
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K+V ++V G + AI + + N + I+DTT+ PHNGC+LP +RR+
Sbjct: 76 MKTVSIKVSGPG--AGRESAIRAVQACNLN------VTSIKDTTKLPHNGCKLPGRRRV 126
>UNIPROTKB|P66367 [details] [associations]
symbol:rpsK "30S ribosomal protein S11" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 KO:K02948 eggNOG:COG0100
ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR PIR:C82061
RefSeq:NP_232201.1 ProteinModelPortal:P66367 SMR:P66367
DNASU:2615590 GeneID:2615590 KEGG:vch:VC2573 PATRIC:20084172
Uniprot:P66367
Length = 129
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 44/117 (37%), Positives = 61/117 (52%)
Query: 139 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLK 198
HI NNT VT+TD +GN A++G +G K + +AA+ AE +A+ GLK
Sbjct: 22 HIHASFNNTIVTITDRQGNALAWATAGG-SGFRGSRKSTPFAAQVAAERCAEMAKEYGLK 80
Query: 199 SVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
++ V VKG ++ ++ GF I I D T PHNGCR PKKRR+
Sbjct: 81 NLEVMVKGPGPGRESTVRALN-AAGFR-------ITNIVDATPIPHNGCRPPKKRRV 129
>TIGR_CMR|VC_2573 [details] [associations]
symbol:VC_2573 "ribosomal protein S11" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 KO:K02948 eggNOG:COG0100
ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR PIR:C82061
RefSeq:NP_232201.1 ProteinModelPortal:P66367 SMR:P66367
DNASU:2615590 GeneID:2615590 KEGG:vch:VC2573 PATRIC:20084172
Uniprot:P66367
Length = 129
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 44/117 (37%), Positives = 61/117 (52%)
Query: 139 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLK 198
HI NNT VT+TD +GN A++G +G K + +AA+ AE +A+ GLK
Sbjct: 22 HIHASFNNTIVTITDRQGNALAWATAGG-SGFRGSRKSTPFAAQVAAERCAEMAKEYGLK 80
Query: 199 SVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
++ V VKG ++ ++ GF I I D T PHNGCR PKKRR+
Sbjct: 81 NLEVMVKGPGPGRESTVRALN-AAGFR-------ITNIVDATPIPHNGCRPPKKRRV 129
>TIGR_CMR|CHY_2283 [details] [associations]
symbol:CHY_2283 "ribosomal protein S11" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:YP_361092.1 ProteinModelPortal:Q3A9U2 SMR:Q3A9U2
STRING:Q3A9U2 GeneID:3728304 KEGG:chy:CHY_2283 PATRIC:21277637
BioCyc:CHYD246194:GJCN-2282-MONOMER Uniprot:Q3A9U2
Length = 129
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 47/125 (37%), Positives = 66/125 (52%)
Query: 132 EHSSEFV-HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGR 190
+H + V HIK NNT VT+TD +GN AS+G + +G K + +AA+ AE +
Sbjct: 14 KHVEQGVAHIKSTFNNTIVTITDPQGNTLSWASAGTVG-FEGTRKGTPFAAQLAAEKAAK 72
Query: 191 LARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLP 250
A G+K+V V VKG + AI S + + I+D T PHNGCR P
Sbjct: 73 EAMEFGVKTVEVYVKGPG--AGREAAIRSLQAAGLE------VSLIKDVTPIPHNGCRPP 124
Query: 251 KKRRI 255
K+RR+
Sbjct: 125 KRRRV 129
>TIGR_CMR|GSU_2833 [details] [associations]
symbol:GSU_2833 "ribosomal protein S11" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001971
InterPro:IPR019981 Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0006412
GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:NP_953876.1 ProteinModelPortal:Q749B1 SMR:Q749B1
GeneID:2686831 KEGG:gsu:GSU2833 PATRIC:22028511
BioCyc:GSUL243231:GH27-2792-MONOMER Uniprot:Q749B1
Length = 131
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 44/118 (37%), Positives = 63/118 (53%)
Query: 139 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLK 198
HI+ NNT +T+TD GN +S+G KG K + +AA+ AE R A+ G++
Sbjct: 24 HIQATFNNTIITITDPVGNVVAWSSAGS-KGFKGSRKSTPFAAQIAAEECARKAQEHGMR 82
Query: 199 SVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
SV V VKG + A+ + + GF + +I D T PHNGCR PK+RR+
Sbjct: 83 SVEVFVKGPG--SGRESALRALQAAGFH-------VNFIRDVTPIPHNGCRPPKRRRV 131
>TIGR_CMR|BA_0136 [details] [associations]
symbol:BA_0136 "ribosomal protein S11" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632
RefSeq:NP_842704.1 RefSeq:YP_016741.1 RefSeq:YP_026422.1
ProteinModelPortal:Q81VQ5 SMR:Q81VQ5 DNASU:1087053
EnsemblBacteria:EBBACT00000008430 EnsemblBacteria:EBBACT00000018043
EnsemblBacteria:EBBACT00000022718 GeneID:1087053 GeneID:2818235
GeneID:2851698 KEGG:ban:BA_0136 KEGG:bar:GBAA_0136 KEGG:bat:BAS0136
OMA:PHNGCRR BioCyc:BANT260799:GJAJ-147-MONOMER
BioCyc:BANT261594:GJ7F-149-MONOMER Uniprot:Q81VQ5
Length = 129
Score = 162 (62.1 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 45/126 (35%), Positives = 65/126 (51%)
Query: 130 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVG 189
N+E + HI+ NNT VT+TD+ GN +S+G L +G K + +AA+ AE
Sbjct: 15 NIE--AGVAHIRSTFNNTIVTLTDTHGNALSWSSAGALG-FRGSRKSTPFAAQMAAETAA 71
Query: 190 RLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRL 249
+ A GLK++ V VKG + AI + + + I D T PHNGCR
Sbjct: 72 KAAMEHGLKTLEVTVKGPG--AGREAAIRALQAAGLE------VTAIRDVTPVPHNGCRP 123
Query: 250 PKKRRI 255
PK+RR+
Sbjct: 124 PKRRRV 129
>TIGR_CMR|DET_0500 [details] [associations]
symbol:DET_0500 "ribosomal protein S11" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0015935 "small ribosomal
subunit" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:YP_181244.1 ProteinModelPortal:Q3Z955 SMR:Q3Z955
STRING:Q3Z955 GeneID:3230222 KEGG:det:DET0500 PATRIC:21608069
BioCyc:DETH243164:GJNF-500-MONOMER Uniprot:Q3Z955
Length = 130
Score = 159 (61.0 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 45/111 (40%), Positives = 56/111 (50%)
Query: 145 NNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRV 204
NNT VT+TD +GN AS G KG K + YAA+ A+ R A GL+ V V V
Sbjct: 29 NNTIVTLTDLQGNVIAWASCGTAG-FKGSRKGTPYAAQMAAQAAARKAAESGLRQVEVLV 87
Query: 205 KGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
KG + AI S + N + I D T PHNGCR PK+RR+
Sbjct: 88 KGPG--SGREAAIRSLQASGIN------VTAIRDVTPIPHNGCRPPKRRRV 130
>TIGR_CMR|CJE_1765 [details] [associations]
symbol:CJE_1765 "ribosomal protein S11" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:YP_179737.1 ProteinModelPortal:Q5HSJ8 SMR:Q5HSJ8
STRING:Q5HSJ8 GeneID:3232392 KEGG:cjr:CJE1765 PATRIC:20045340
BioCyc:CJEJ195099:GJC0-1795-MONOMER Uniprot:Q5HSJ8
Length = 130
Score = 157 (60.3 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 41/118 (34%), Positives = 60/118 (50%)
Query: 138 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGL 197
V+I NNT VTVTD GN +S+G L KG K + YAA+ E A+ G+
Sbjct: 21 VYISATFNNTMVTVTDEMGNAIAWSSAGGLG-FKGSKKSTPYAAQQAVEDALNKAKEHGI 79
Query: 198 KSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
K V ++V+G ++ + EG + +++D T HNGCR PK+RR+
Sbjct: 80 KEVGIKVQGPGSGRETAVKSVGAMEGIK-------VTFLKDITPLAHNGCRPPKRRRV 130
>UNIPROTKB|P0A7R9 [details] [associations]
symbol:rpsK species:83333 "Escherichia coli K-12"
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0070181 "SSU rRNA binding" evidence=IDA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;IDA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006412
EMBL:U18997 GO:GO:0003735 PDB:3J00 PDBsum:3J00 GO:GO:0070181
PDB:3FIH PDB:3IZV PDB:3IZW PDBsum:3FIH PDBsum:3IZV PDBsum:3IZW
GO:GO:0022627 PDB:3SFS PDB:3UOQ PDBsum:3SFS PDBsum:3UOQ EMBL:X02543
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 KO:K02948 eggNOG:COG0100 PDB:4GAS
PDB:4GD1 PDBsum:4GAS PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87
PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P
PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF
PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2VHO
PDB:2VHP PDB:2WWL PDB:2YKR PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3
PDB:3E1A PDB:3E1C PDB:3I1M PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z
PDB:3I21 PDB:3J0U PDB:3J0V PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13
PDB:3J18 PDB:3KC4 PDB:3OAQ PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO
PDB:3OFP PDB:3OFX PDB:3OFY PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV
PDB:4GAQ PDB:4GD2 PDBsum:1M5G PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5
PDBsum:1VS7 PDBsum:2AVY PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB
PDBsum:2I2P PDBsum:2I2U PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9
PDBsum:2QBB PDBsum:2QBD PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ
PDBsum:2QOU PDBsum:2QOW PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO
PDBsum:2VHP PDBsum:2WWL PDBsum:2YKR PDBsum:2Z4K PDBsum:2Z4M
PDBsum:3DF1 PDBsum:3DF3 PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M
PDBsum:3I1O PDBsum:3I1Q PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21
PDBsum:3J0U PDBsum:3J0V PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10
PDBsum:3J13 PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR
PDBsum:3OFA PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX
PDBsum:3OFY PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV
PDBsum:4GAQ PDBsum:4GD2 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632
OMA:PHNGCRR PIR:B23807 RefSeq:NP_417756.1 RefSeq:YP_492135.1
ProteinModelPortal:P0A7R9 SMR:P0A7R9 DIP:DIP-47838N IntAct:P0A7R9
MINT:MINT-1232137 PaxDb:P0A7R9 PRIDE:P0A7R9
EnsemblBacteria:EBESCT00000001211 EnsemblBacteria:EBESCT00000016522
GeneID:12934439 GeneID:947792 KEGG:ecj:Y75_p3879 KEGG:eco:b3297
PATRIC:32122026 EchoBASE:EB0903 EcoGene:EG10910
HOGENOM:HOG000111598 BioCyc:EcoCyc:EG10910-MONOMER
BioCyc:ECOL316407:JW3259-MONOMER EvolutionaryTrace:P0A7R9
Genevestigator:P0A7R9 Uniprot:P0A7R9
Length = 129
Score = 153 (58.9 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 44/128 (34%), Positives = 62/128 (48%)
Query: 128 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEH 187
R + S HI NNT VT+TD +GN A++G +G K + +AA+ AE
Sbjct: 11 RVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGG-SGFRGSRKSTPFAAQVAAER 69
Query: 188 VGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGC 247
+ G+K++ V VKG ++ ++ GF I I D T PHNGC
Sbjct: 70 CADAVKEYGIKNLEVMVKGPGPGRESTIRALN-AAGFR-------ITNITDVTPIPHNGC 121
Query: 248 RLPKKRRI 255
R PKKRR+
Sbjct: 122 RPPKKRRV 129
>TIGR_CMR|SPO_0510 [details] [associations]
symbol:SPO_0510 "ribosomal protein S11" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:YP_165772.1 ProteinModelPortal:Q5LW33 SMR:Q5LW33
GeneID:3195723 KEGG:sil:SPO0510 PATRIC:23374283 Uniprot:Q5LW33
Length = 130
Score = 152 (58.6 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 44/128 (34%), Positives = 68/128 (53%)
Query: 128 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEH 187
R N+ +S H+ NNT + ++D +GN +S+G + KG K + YAA+ AE
Sbjct: 14 RKNI--ASGVAHVNSTFNNTKILISDVQGNAISWSSAGTMG-FKGSRKSTPYAAQLAAED 70
Query: 188 VGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGC 247
GR A++ G+K++ V V+G ++ ++ GF N I I D T HNGC
Sbjct: 71 AGRKAQDHGVKTLEVEVQGPGSGRESALRALA-AVGF-N------ITSIRDVTPIAHNGC 122
Query: 248 RLPKKRRI 255
R PK+RR+
Sbjct: 123 RPPKRRRV 130
>TIGR_CMR|APH_0302 [details] [associations]
symbol:APH_0302 "ribosomal protein S11" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 PANTHER:PTHR11759 PROSITE:PS00054
HOGENOM:HOG000111597 KO:K02948 eggNOG:COG0100 OMA:TSAGACN
RefSeq:YP_504914.1 ProteinModelPortal:Q2GL37 STRING:Q2GL37
GeneID:3931045 KEGG:aph:APH_0302 PATRIC:20949178
ProtClustDB:PRK05309 BioCyc:APHA212042:GHPM-332-MONOMER
TIGRFAMs:TIGR03632 Uniprot:Q2GL37
Length = 124
Score = 151 (58.2 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 41/119 (34%), Positives = 61/119 (51%)
Query: 138 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEAT-AEHVGRLARNMG 196
VHI NN VT+ D +G+ + S+G KG K + YAA+ T A V + G
Sbjct: 15 VHICATYNNVIVTIADQQGHVLVTTSAGAC-NFKGSKKSTPYAAQETVARAVKAVIERNG 73
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K+V V + G + AI + + N + I+D T+ PHNGC+LPK+RR+
Sbjct: 74 MKTVSVCISGPG--AGREAAIRAVQACNLN------VTSIKDVTKLPHNGCKLPKRRRV 124
>UNIPROTKB|P0C462 [details] [associations]
symbol:rps11 "30S ribosomal protein S11, chloroplastic"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0009507 GO:GO:0009536 GO:GO:0006412
GO:GO:0005840 EMBL:AY522331 GO:GO:0003735 GO:GO:0019843
ProtClustDB:CHL00041 Gene3D:3.30.420.80 HAMAP:MF_01310
InterPro:IPR018102 PANTHER:PTHR11759 PROSITE:PS00054
RefSeq:NP_039418.1 ProteinModelPortal:P0C462 SMR:P0C462
GeneID:3131435 KEGG:osa:3131435 Gramene:P0C462 HOGENOM:HOG000111597
KO:K02948 Genevestigator:P0C462 Uniprot:P0C462
Length = 143
Score = 142 (55.0 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 44/118 (37%), Positives = 59/118 (50%)
Query: 138 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGL 197
+H++ NNT +TVTD +G +S+G K K S YA + TA V + R +GL
Sbjct: 38 IHVQASFNNTIITVTDPQGRVVFWSSAGTCG-FKSSRKASPYAGQRTA--VDAI-RTVGL 93
Query: 198 KSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+ V VKG R A + A S + + I D T PHNGCR PKKRR+
Sbjct: 94 QRAEVMVKGAG---SGRDAAL---RAIAKSGVR--LSCIRDVTPMPHNGCRPPKKRRL 143
>UNIPROTKB|P0C463 [details] [associations]
symbol:rps11 "30S ribosomal protein S11, chloroplastic"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0009507 GO:GO:0009536 GO:GO:0006412
GO:GO:0005840 EMBL:AY522329 GO:GO:0003735 GO:GO:0019843
ProtClustDB:CHL00041 Gene3D:3.30.420.80 HAMAP:MF_01310
InterPro:IPR018102 PANTHER:PTHR11759 PROSITE:PS00054
RefSeq:YP_654236.1 ProteinModelPortal:P0C463 SMR:P0C463
GeneID:4126926 Gramene:P0C463 Uniprot:P0C463
Length = 143
Score = 142 (55.0 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 44/118 (37%), Positives = 59/118 (50%)
Query: 138 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGL 197
+H++ NNT +TVTD +G +S+G K K S YA + TA V + R +GL
Sbjct: 38 IHVQASFNNTIITVTDPQGRVVFWSSAGTCG-FKSSRKASPYAGQRTA--VDAI-RTVGL 93
Query: 198 KSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+ V VKG R A + A S + + I D T PHNGCR PKKRR+
Sbjct: 94 QRAEVMVKGAG---SGRDAAL---RAIAKSGVR--LSCIRDVTPMPHNGCRPPKKRRL 143
>UNIPROTKB|P0C464 [details] [associations]
symbol:rps11 "30S ribosomal protein S11, chloroplastic"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0009507 GO:GO:0009536 GO:GO:0006412
GO:GO:0005840 EMBL:X15901 EMBL:AY522330 GenomeReviews:AY522330_GR
GO:GO:0003735 GO:GO:0019843 ProtClustDB:CHL00041 Gene3D:3.30.420.80
HAMAP:MF_01310 InterPro:IPR018102 PANTHER:PTHR11759 PROSITE:PS00054
RefSeq:NP_039418.1 GeneID:3131435 KEGG:osa:3131435 KO:K02948
PIR:JQ0259 ProteinModelPortal:P0C464 SMR:P0C464 STRING:P0C464
EnsemblPlants:LOC_Os04g16838.1 EnsemblPlants:LOC_Os10g21332.1
EnsemblPlants:LOC_Osp1g00670.1 Gramene:P0C464 eggNOG:COG0100
OMA:TSAGACN Uniprot:P0C464
Length = 143
Score = 142 (55.0 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 44/118 (37%), Positives = 59/118 (50%)
Query: 138 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGL 197
+H++ NNT +TVTD +G +S+G K K S YA + TA V + R +GL
Sbjct: 38 IHVQASFNNTIITVTDPQGRVVFWSSAGTCG-FKSSRKASPYAGQRTA--VDAI-RTVGL 93
Query: 198 KSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+ V VKG R A + A S + + I D T PHNGCR PKKRR+
Sbjct: 94 QRAEVMVKGAG---SGRDAAL---RAIAKSGVR--LSCIRDVTPMPHNGCRPPKKRRL 143
>UNIPROTKB|Q6ENE1 [details] [associations]
symbol:rps11 "30S ribosomal protein S11, chloroplastic"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0009507 GO:GO:0009536 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:AP006728
RefSeq:YP_052782.1 ProteinModelPortal:Q6ENE1 SMR:Q6ENE1
GeneID:2885931 Gramene:Q6ENE1 ProtClustDB:CHL00041
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 Uniprot:Q6ENE1
Length = 143
Score = 142 (55.0 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 44/118 (37%), Positives = 59/118 (50%)
Query: 138 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGL 197
+H++ NNT +TVTD +G +S+G K K S YA + TA V + R +GL
Sbjct: 38 IHVQASFNNTIITVTDPQGRVVFWSSAGTCG-FKSSRKASPYAGQRTA--VDAI-RTVGL 93
Query: 198 KSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+ V VKG R A + A S + + I D T PHNGCR PKKRR+
Sbjct: 94 QRAEVMVKGAG---SGRDAAL---RAIAKSGVR--LSCIRDVTPMPHNGCRPPKKRRL 143
>TIGR_CMR|NSE_0288 [details] [associations]
symbol:NSE_0288 "ribosomal protein S11" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0015935 "small ribosomal
subunit" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 OMA:TSAGACN ProtClustDB:PRK05309 TIGRFAMs:TIGR03632
RefSeq:YP_506179.1 ProteinModelPortal:Q2GEB7 STRING:Q2GEB7
GeneID:3931720 KEGG:nse:NSE_0288 PATRIC:22680669
BioCyc:NSEN222891:GHFU-315-MONOMER Uniprot:Q2GEB7
Length = 120
Score = 141 (54.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 39/117 (33%), Positives = 65/117 (55%)
Query: 139 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLK 198
H+ + NN +++VTD +GN + ASSG + KG K + YAA++ A + + +GLK
Sbjct: 13 HVIVTFNNVYISVTDHQGNVQGWASSGSVG-FKGNKKSTAYAAQSVATTLMTKLKRIGLK 71
Query: 199 SVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+ V + G ++ A+ + R NS I+ ++D T PHNG RL ++RR+
Sbjct: 72 ILNVHLSGSNPIREA--ALRAIR----NSGIV--IISLQDMTPVPHNGVRLRRRRRV 120
>FB|FBgn0038474 [details] [associations]
symbol:mRpS11 "mitochondrial ribosomal protein S11"
species:7227 "Drosophila melanogaster" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0005763 "mitochondrial
small ribosomal subunit" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR001971 Pfam:PF00411 EMBL:AE014297
GO:GO:0006412 GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.420.80
PANTHER:PTHR11759 CTD:64963 GeneTree:ENSGT00390000016068
OMA:EGFKNTR FlyBase:FBgn0038474 ChiTaRS:MRPS11 EMBL:AY095194
EMBL:DQ062760 RefSeq:NP_524382.1 UniGene:Dm.20701 SMR:Q9VEN6
STRING:Q9VEN6 EnsemblMetazoa:FBtr0089894 GeneID:42061
KEGG:dme:Dmel_CG5184 UCSC:CG5184-RA InParanoid:Q9VEN6
GenomeRNAi:42061 NextBio:826975 Uniprot:Q9VEN6
Length = 200
Score = 112 (44.5 bits), Expect = 0.00015, P = 0.00015
Identities = 40/116 (34%), Positives = 58/116 (50%)
Query: 139 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLK 198
+I++ NNT ++VTD KG R+ S G + K K + AA+ATA + A +G K
Sbjct: 93 NIRVSPNNTIISVTDHKGVLRLIRSCG-IEGFKNTRKGTNIAAQATAVTISGKAIELGWK 151
Query: 199 SVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRR 254
+V V+V+G + AI + G N IV I D T N R P+K+R
Sbjct: 152 TVRVKVRGLG--PGRMSAIKGLQMGGLN------IVSITDNTHVSFNPPR-PRKQR 198
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 255 255 0.00085 114 3 11 22 0.44 33
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 605 (64 KB)
Total size of DFA: 187 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.04u 0.14s 21.18t Elapsed: 00:00:01
Total cpu time: 21.04u 0.14s 21.18t Elapsed: 00:00:01
Start: Mon May 20 21:40:21 2013 End: Mon May 20 21:40:22 2013