BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025294
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7NQH5|RS11_CHRVO 30S ribosomal protein S11 OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=rpsK PE=3 SV=1
Length = 131
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
Query: 134 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLAR 193
S VH+ NNT +T+TD +GN A+SG KG K + +AA+ AEH G++A+
Sbjct: 19 SEGIVHVHASFNNTIITITDRQGNALSWATSGGA-GFKGSRKSTPFAAQVAAEHAGKVAQ 77
Query: 194 NMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKK 252
G+K++ VR+KG + A+ + GF I I D T PHNGCR PKK
Sbjct: 78 EYGVKNLEVRIKG--PGPGRESAVRALNSLGFK-------ITSISDVTPVPHNGCRPPKK 128
Query: 253 RRI 255
RRI
Sbjct: 129 RRI 131
>sp|Q1LI61|RS11_RALME 30S ribosomal protein S11 OS=Ralstonia metallidurans (strain CH34 /
ATCC 43123 / DSM 2839) GN=rpsK PE=3 SV=1
Length = 133
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 13/140 (9%)
Query: 119 GPSQFGQFPRYNVEH--SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKM 176
GP+ Q R V+ + H+ NNT +T+TD +GN A++G KG K
Sbjct: 4 GPNNAAQRARKKVKKNVADGIAHVHASFNNTIITITDRQGNALSWATAGGQ-GFKGSRKS 62
Query: 177 SRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVY 235
+ +AA+ AE+ GR+A++ G+K++ VR+KG ++ A+ + G I
Sbjct: 63 TPFAAQVAAENAGRVAQDQGIKNLEVRIKGPGPGRE--SAVRALNALGIK-------IAV 113
Query: 236 IEDTTRRPHNGCRLPKKRRI 255
IED T PHNGCR PK+RRI
Sbjct: 114 IEDVTPVPHNGCRPPKRRRI 133
>sp|B2UEJ5|RS11_RALPJ 30S ribosomal protein S11 OS=Ralstonia pickettii (strain 12J)
GN=rpsK PE=3 SV=1
Length = 133
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 128 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEH 187
R NV VH NNT +T+TD +GN A+SG KG K + +AA+ AE
Sbjct: 17 RKNVADGIAHVHASF--NNTIITITDRQGNALSWATSGGQ-GFKGSRKSTPFAAQVAAES 73
Query: 188 VGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNG 246
GR+A++ G+K++ VR+KG ++ A+ + G I IED T PHNG
Sbjct: 74 AGRVAQDQGIKNLEVRIKGPGPGRE--SAVRALNNLGIK-------IQLIEDVTPVPHNG 124
Query: 247 CRLPKKRRI 255
CR PK+RRI
Sbjct: 125 CRPPKRRRI 133
>sp|Q82X71|RS11_NITEU 30S ribosomal protein S11 OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=rpsK PE=3 SV=1
Length = 129
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 64/118 (54%), Gaps = 11/118 (9%)
Query: 139 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLK 198
HI NNT VT++D +GN A+SG + KG K + +AA+ AEH GR A G+K
Sbjct: 22 HIHASFNNTIVTISDRQGNALSWATSGGV-GFKGSRKSTPFAAQVAAEHAGRAALEYGVK 80
Query: 199 SVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
++ VRVKG + A+ + GF I I D T PHNGCR PKKRRI
Sbjct: 81 NLEVRVKG--PGPGRDSAVRALNATGFK-------ITSITDVTPIPHNGCRPPKKRRI 129
>sp|Q0AIH3|RS11_NITEC 30S ribosomal protein S11 OS=Nitrosomonas eutropha (strain C91)
GN=rpsK PE=3 SV=1
Length = 129
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 64/120 (53%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
HI NNT VT++D +GN A+SG + KG K + +AA+ AEH GR A G
Sbjct: 20 VAHIHASFNNTIVTISDRQGNALSWATSGGV-GFKGSRKSTPFAAQVAAEHAGRAALEYG 78
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ +RVKG + A+ + GF I I D T PHNGCR PKKRRI
Sbjct: 79 VKNLEIRVKG--PGPGRDSAVRALNATGFK-------ITSITDVTPVPHNGCRPPKKRRI 129
>sp|Q8XV36|RS11_RALSO 30S ribosomal protein S11 OS=Ralstonia solanacearum (strain
GMI1000) GN=rpsK PE=3 SV=1
Length = 133
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 128 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEH 187
R NV VH NNT +T+TD +GN A+SG KG K + +AA+ AE
Sbjct: 17 RKNVADGIAHVHASF--NNTIITITDRQGNALSWATSGGQ-GFKGSRKSTPFAAQVAAES 73
Query: 188 VGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNG 246
GR+A++ G+K++ VR+KG ++ A+ + G I IED T PHNG
Sbjct: 74 AGRVAQDQGIKNLEVRIKGPGPGRE--SAVRALNNLGIK-------IQVIEDVTPVPHNG 124
Query: 247 CRLPKKRRI 255
CR PK+RRI
Sbjct: 125 CRPPKRRRI 133
>sp|Q0VSI0|RS11_ALCBS 30S ribosomal protein S11 OS=Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573) GN=rpsK PE=3 SV=1
Length = 132
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
H+ NNT +T+TD +GN A+SG +G K + +AA+ AE+ G A++ G
Sbjct: 23 IAHVHASFNNTIITITDRQGNALSWATSGGA-GFRGSRKSTPFAAQVAAENAGNAAKDYG 81
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
LK++ VRVKG R++ + G I +IED T PHNGCR PKKRR+
Sbjct: 82 LKNLEVRVKGPG---PGRESSIRALNGCGYK-----ITHIEDVTPIPHNGCRPPKKRRV 132
>sp|Q3J8T6|RS11_NITOC 30S ribosomal protein S11 OS=Nitrosococcus oceani (strain ATCC
19707 / NCIMB 11848) GN=rpsK PE=3 SV=1
Length = 127
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 134 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLAR 193
S HI NNT VT+TD +GN A+SG +G K + +AA+ AE GR+ +
Sbjct: 15 SDGIAHIHASFNNTIVTITDRQGNTLAWATSGG-SGFRGSRKSTPFAAQVAAEKAGRIVQ 73
Query: 194 NMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQN--PIVYIEDTTRRPHNGCRLPK 251
MG+K++ VRVKG RE A S + + I D T PHNGCR PK
Sbjct: 74 EMGMKNLEVRVKGPG----------PGRESAARSLNNVGFKVTNIADITPIPHNGCRPPK 123
Query: 252 KRRI 255
KRR+
Sbjct: 124 KRRV 127
>sp|B3R7E5|RS11_CUPTR 30S ribosomal protein S11 OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=rpsK PE=3 SV=1
Length = 132
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
H+ NNT +T+TD +GN A++G KG K + +AA+ AE+ GR+A++ G
Sbjct: 23 IAHVHASFNNTIITITDRQGNALSWATAGGQ-GFKGSRKSTPFAAQVAAENAGRVAQDQG 81
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG ++ A+ + G I IED T PHNGCR PK+RRI
Sbjct: 82 IKNLEVRIKGPGPGRE--SAVRALNALGIK-------IAIIEDVTPIPHNGCRPPKRRRI 132
>sp|Q46WG7|RS11_CUPPJ 30S ribosomal protein S11 OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=rpsK PE=3 SV=1
Length = 132
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
H+ NNT +T+TD +GN A++G KG K + +AA+ AE+ GR+A++ G
Sbjct: 23 IAHVHASFNNTIITITDRQGNALSWATAGGQ-GFKGSRKSTPFAAQVAAENAGRVAQDQG 81
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG ++ A+ + G I IED T PHNGCR PK+RRI
Sbjct: 82 IKNLEVRIKGPGPGRE--SAVRALNALGIK-------IAIIEDVTPIPHNGCRPPKRRRI 132
>sp|Q0K643|RS11_CUPNH 30S ribosomal protein S11 OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=rpsK PE=3 SV=1
Length = 132
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
H+ NNT +T+TD +GN A++G KG K + +AA+ AE+ GR+A++ G
Sbjct: 23 IAHVHASFNNTIITITDRQGNALSWATAGGQ-GFKGSRKSTPFAAQVAAENAGRVAQDQG 81
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG ++ A+ + G I IED T PHNGCR PK+RRI
Sbjct: 82 IKNLEVRIKGPGPGRE--SAVRALNALGIK-------IAIIEDVTPIPHNGCRPPKRRRI 132
>sp|Q2YAX4|RS11_NITMU 30S ribosomal protein S11 OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=rpsK PE=3 SV=1
Length = 129
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
H+ NNT VT+TD +GN A+SG KG K + +AA+ AE GR A+ G
Sbjct: 20 IAHVHASFNNTIVTITDRQGNALSWATSGGA-GFKGSRKSTPFAAQVAAEQAGRAAQEYG 78
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFR-EGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG + A+ + GF I I D T PHNGCR PKKRRI
Sbjct: 79 VKNLEVRIKG--PGPGRESAVRALNAAGFK-------ITSISDVTPVPHNGCRPPKKRRI 129
>sp|A5N4S3|RS11_CLOK5 30S ribosomal protein S11 OS=Clostridium kluyveri (strain ATCC 8527
/ DSM 555 / NCIMB 10680) GN=rpsK PE=3 SV=1
Length = 132
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 68/128 (53%), Gaps = 11/128 (8%)
Query: 128 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEH 187
R NVEH HI+ NN+ VT+TD+ GN AS+G L +G K + +AA+ AE
Sbjct: 16 RKNVEHGC--AHIRSTFNNSIVTITDAAGNTLSWASAGGL-GFRGSRKSTPFAAQMAAET 72
Query: 188 VGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGC 247
+ A GLKS+ V VKG ++ AI S + + I+D T PHNGC
Sbjct: 73 SAKAAMEHGLKSIEVYVKGPGSGRE--AAIRSLQAAGLE------VTLIKDVTPIPHNGC 124
Query: 248 RLPKKRRI 255
R PK+RR+
Sbjct: 125 RPPKRRRV 132
>sp|B9DYD5|RS11_CLOK1 30S ribosomal protein S11 OS=Clostridium kluyveri (strain NBRC
12016) GN=rpsK PE=3 SV=1
Length = 132
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 68/128 (53%), Gaps = 11/128 (8%)
Query: 128 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEH 187
R NVEH HI+ NN+ VT+TD+ GN AS+G L +G K + +AA+ AE
Sbjct: 16 RKNVEHGC--AHIRSTFNNSIVTITDAAGNTLSWASAGGL-GFRGSRKSTPFAAQMAAET 72
Query: 188 VGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGC 247
+ A GLKS+ V VKG ++ AI S + + I+D T PHNGC
Sbjct: 73 SAKAAMEHGLKSIEVYVKGPGSGRE--AAIRSLQAAGLE------VTLIKDVTPIPHNGC 124
Query: 248 RLPKKRRI 255
R PK+RR+
Sbjct: 125 RPPKRRRV 132
>sp|Q13TJ4|RS11_BURXL 30S ribosomal protein S11 OS=Burkholderia xenovorans (strain LB400)
GN=rpsK PE=3 SV=1
Length = 134
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 25 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 83
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 84 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPVPHNGCRPPKRRRI 134
>sp|Q605D5|RS11_METCA 30S ribosomal protein S11 OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=rpsK PE=3 SV=1
Length = 128
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 128 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEH 187
R + S HI NNT +T+TD KGN AS+G +G K + +AA+ AE
Sbjct: 10 RVKRDISDGIAHISASFNNTIITITDRKGNALSWASAGA-SGFRGSRKSTPFAAQVAAEK 68
Query: 188 VGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNG 246
G +A+ G+K++ V V G + A+ S GF IV + DTT PHNG
Sbjct: 69 AGAVAKEYGIKNLDVHVTG--PGPGRESAVRSLNALGFK-------IVNVVDTTPLPHNG 119
Query: 247 CRLPKKRRI 255
CR PKKRR+
Sbjct: 120 CRPPKKRRV 128
>sp|Q0ANS3|RS11_MARMM 30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10)
GN=rpsK PE=3 SV=1
Length = 129
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 11/123 (8%)
Query: 134 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLAR 193
+S H+ NNT VT+TD++GN +S+G + KG K + YAA+ AE G+ A
Sbjct: 17 TSGVAHVSASFNNTMVTITDAQGNAISWSSAGHM-GFKGSRKSTPYAAQMAAEDAGKKAM 75
Query: 194 NMGLKSVVVRVKGFTYFKKKR-QAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKK 252
G+K++ V+V G ++ +A+ S GF I I+D T PHNGCR PK+
Sbjct: 76 EHGMKTIEVKVSGPGSGRESALRALQSV--GFT-------ITTIQDVTPIPHNGCRPPKR 126
Query: 253 RRI 255
RR+
Sbjct: 127 RRV 129
>sp|B3CT28|RS11_ORITI 30S ribosomal protein S11 OS=Orientia tsutsugamushi (strain Ikeda)
GN=rpsK PE=3 SV=1
Length = 126
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
V+IK NNT VT TD +GN S+G + KG K + YAA+ E V +A+ G
Sbjct: 17 IVYIKSTFNNTIVTFTDMQGNAIAALSAGAI-GFKGAKKATPYAAQVIVEKVSEVAKEHG 75
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVY-IEDTTRRPHNGCRLPKKRRI 255
+K++ +R++G Q + R F +QN IV I DT+ HNGCR PKKRR+
Sbjct: 76 IKTLSIRIQG-----AGSQRESALRAIF----NQNFIVTSITDTSPVAHNGCRPPKKRRV 126
>sp|A5CCJ0|RS11_ORITB 30S ribosomal protein S11 OS=Orientia tsutsugamushi (strain
Boryong) GN=rpsK PE=3 SV=1
Length = 126
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
V+IK NNT VT TD +GN S+G + KG K + YAA+ E V +A+ G
Sbjct: 17 IVYIKSTFNNTIVTFTDMQGNAIAALSAGAI-GFKGAKKATPYAAQVIVEKVSEVAKEHG 75
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVY-IEDTTRRPHNGCRLPKKRRI 255
+K++ +R++G Q + R F +QN IV I DT+ HNGCR PKKRR+
Sbjct: 76 IKTLSIRIQG-----AGSQRESALRAIF----NQNFIVTSITDTSPVAHNGCRPPKKRRV 126
>sp|A4JAR4|RS11_BURVG 30S ribosomal protein S11 OS=Burkholderia vietnamiensis (strain G4
/ LMG 22486) GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|Q2SU51|RS11_BURTA 30S ribosomal protein S11 OS=Burkholderia thailandensis (strain
E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsK
PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|Q39KE3|RS11_BURS3 30S ribosomal protein S11 OS=Burkholderia sp. (strain 383) GN=rpsK
PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|Q63Q35|RS11_BURPS 30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain
K96243) GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|A3NEF5|RS11_BURP6 30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain 668)
GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|Q3JMT7|RS11_BURP1 30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain
1710b) GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|A3P089|RS11_BURP0 30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain
1106a) GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|A1V879|RS11_BURMS 30S ribosomal protein S11 OS=Burkholderia mallei (strain SAVP1)
GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|Q62GM9|RS11_BURMA 30S ribosomal protein S11 OS=Burkholderia mallei (strain ATCC
23344) GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|A2S7K0|RS11_BURM9 30S ribosomal protein S11 OS=Burkholderia mallei (strain NCTC
10229) GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|A3MRX8|RS11_BURM7 30S ribosomal protein S11 OS=Burkholderia mallei (strain NCTC
10247) GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|A9ADL7|RS11_BURM1 30S ribosomal protein S11 OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|Q0BJ22|RS11_BURCM 30S ribosomal protein S11 OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|B4E5E4|RS11_BURCJ 30S ribosomal protein S11 OS=Burkholderia cepacia (strain J2315 /
LMG 16656) GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|A0K3P9|RS11_BURCH 30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain
HI2424) GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|B1JU46|RS11_BURCC 30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain
MC0-3) GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|Q1BRX2|RS11_BURCA 30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain AU
1054) GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|B1YRQ3|RS11_BURA4 30S ribosomal protein S11 OS=Burkholderia ambifaria (strain MC40-6)
GN=rpsK PE=3 SV=1
Length = 133
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G
Sbjct: 24 VVHVHASFNNTIITITDRQGNALAWATSGGQ-GFKGSRKSTPFAAQVAAESAGRVAMEYG 82
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI
Sbjct: 83 VKNLEVRIKGPG---PGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
>sp|Q0BUM7|RS11_GRABC 30S ribosomal protein S11 OS=Granulibacter bethesdensis (strain
ATCC BAA-1260 / CGDNIH1) GN=rpsK PE=3 SV=1
Length = 131
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 128 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEH 187
R N+ SS H+ NNT +T++D++GN I SS KG K + YAA+ AE
Sbjct: 15 RKNI--SSGVAHVAATFNNTMITISDAQGNA-IAWSSAGAQGFKGSRKSTPYAAQVAAED 71
Query: 188 VGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNG 246
GR AR G++++ + V G ++ A+ + + GFA I I DTT PHNG
Sbjct: 72 AGRKAREHGMETLEIEVSGPGSGRE--SALRALQAVGFA-------ITAIRDTTPIPHNG 122
Query: 247 CRLPKKRRI 255
CR K+RR+
Sbjct: 123 CRPRKRRRV 131
>sp|Q1AU54|RS11_RUBXD 30S ribosomal protein S11 OS=Rubrobacter xylanophilus (strain DSM
9941 / NBRC 16129) GN=rpsK PE=3 SV=1
Length = 135
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
Query: 134 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLAR 193
S+ VHIK NNT ++VTD +GN S+G + KG K + YAA+ TAE A
Sbjct: 23 STAVVHIKSSFNNTIISVTDQEGNVIAWESAGSMG-FKGSRKSTPYAAQMTAESAANKAM 81
Query: 194 NMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKK 252
G+K V ++VKG + + A +F+ G ++ I+D T +PHNGCR PK+
Sbjct: 82 EHGVKRVDIQVKG--HGSGRDMAARTFQAMGI-------EVLSIKDVTGQPHNGCRPPKR 132
Query: 253 RR 254
RR
Sbjct: 133 RR 134
>sp|Q4G348|RR11_EMIHU 30S ribosomal protein S11, chloroplastic OS=Emiliania huxleyi
GN=rps11 PE=3 SV=1
Length = 130
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSG-CLPELKGGPKMSRYAAEATAEHVGRLARNM 195
VHIK NNT V +TD +GN AS+G C KG K + +AA++ AE VG +A
Sbjct: 21 IVHIKSTFNNTIVNITDKQGNTLFWASAGGC--GFKGAKKSTPFAAQSAAEKVGSMAVEQ 78
Query: 196 GLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
G+K V + G + AI + + ++ I+D T PHNGCR PKKRR+
Sbjct: 79 GMKQAEVIISG--PGNGRETAIRALQSCGLE------VLLIKDITPVPHNGCRPPKKRRV 130
>sp|B4R8P0|RS11_PHEZH 30S ribosomal protein S11 OS=Phenylobacterium zucineum (strain
HLK1) GN=rpsK PE=3 SV=1
Length = 129
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 11/136 (8%)
Query: 120 PSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRY 179
P++ + R N+ +S H+ NNT VT+TD++GN I SS L KG K + Y
Sbjct: 5 PARVKRRERKNI--TSGVAHVNASFNNTMVTITDAQGNT-ISWSSAGLMGFKGSRKSTPY 61
Query: 180 AAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDT 239
AA+ AE GR A G++++ V V G R++ + + + I I D
Sbjct: 62 AAQMAAEDAGRKAAEHGVRTLEVNVSGP---GSGRESALRALQAVGMT-----ITTIRDV 113
Query: 240 TRRPHNGCRLPKKRRI 255
T PHNGCR PK+RR+
Sbjct: 114 TPIPHNGCRPPKRRRV 129
>sp|A1WV99|RS11_HALHL 30S ribosomal protein S11 OS=Halorhodospira halophila (strain DSM
244 / SL1) GN=rpsK PE=3 SV=1
Length = 131
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 134 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLAR 193
S HI NNT +T+TD +GN AS+G KG K + +AA+ +E R A+
Sbjct: 19 SDGVAHINATFNNTLITITDRQGNALSWASAGG-SGFKGSRKSTPFAAQVASETAARAAQ 77
Query: 194 NMGLKSVVVRVKGFTYFKKKR-QAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKK 252
+ GLK+V VRVKG ++ +A+ + N D +PI PHNGCR PKK
Sbjct: 78 DYGLKNVEVRVKGPGPGRESAVRALNAVGYRITNISDVSPI---------PHNGCRPPKK 128
Query: 253 RRI 255
RR+
Sbjct: 129 RRV 131
>sp|P0A0X2|RS11_XANCP 30S ribosomal protein S11 OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=rpsK PE=3
SV=1
Length = 130
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
H+ NNT VT+TD +GN A+SG +G K + +AA+ AE GR A + G
Sbjct: 21 VAHVHASFNNTIVTITDRQGNALSWATSGGA-GFRGSRKSTPFAAQVAAEKAGRAALDYG 79
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+KS+ VR+KG + A+ S G+ I I D T PHNGCR PKKRR+
Sbjct: 80 VKSLEVRIKG--PGPGRESAVRSLNNVGYK-------ITNIIDVTPIPHNGCRPPKKRRV 130
>sp|B0RU60|RS11_XANCB 30S ribosomal protein S11 OS=Xanthomonas campestris pv. campestris
(strain B100) GN=rpsK PE=3 SV=1
Length = 130
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
H+ NNT VT+TD +GN A+SG +G K + +AA+ AE GR A + G
Sbjct: 21 VAHVHASFNNTIVTITDRQGNALSWATSGGA-GFRGSRKSTPFAAQVAAEKAGRAALDYG 79
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+KS+ VR+KG + A+ S G+ I I D T PHNGCR PKKRR+
Sbjct: 80 VKSLEVRIKG--PGPGRESAVRSLNNVGYK-------ITNIIDVTPIPHNGCRPPKKRRV 130
>sp|Q4URG1|RS11_XANC8 30S ribosomal protein S11 OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=rpsK PE=3 SV=1
Length = 130
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
H+ NNT VT+TD +GN A+SG +G K + +AA+ AE GR A + G
Sbjct: 21 VAHVHASFNNTIVTITDRQGNALSWATSGGA-GFRGSRKSTPFAAQVAAEKAGRAALDYG 79
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+KS+ VR+KG + A+ S G+ I I D T PHNGCR PKKRR+
Sbjct: 80 VKSLEVRIKG--PGPGRESAVRSLNNVGYK-------ITNIIDVTPIPHNGCRPPKKRRV 130
>sp|Q3BWW1|RS11_XANC5 30S ribosomal protein S11 OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=rpsK PE=3 SV=1
Length = 130
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
H+ NNT VT+TD +GN A+SG +G K + +AA+ AE GR A + G
Sbjct: 21 VAHVHASFNNTIVTITDRQGNALSWATSGGA-GFRGSRKSTPFAAQVAAEKAGRAALDYG 79
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+KS+ VR+KG + A+ S G+ I I D T PHNGCR PKKRR+
Sbjct: 80 VKSLEVRIKG--PGPGRESAVRSLNNVGYK-------ITNIIDVTPIPHNGCRPPKKRRV 130
>sp|P0A0X3|RS11_XANAC 30S ribosomal protein S11 OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=rpsK PE=3 SV=1
Length = 130
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
H+ NNT VT+TD +GN A+SG +G K + +AA+ AE GR A + G
Sbjct: 21 VAHVHASFNNTIVTITDRQGNALSWATSGGA-GFRGSRKSTPFAAQVAAEKAGRAALDYG 79
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+KS+ VR+KG + A+ S G+ I I D T PHNGCR PKKRR+
Sbjct: 80 VKSLEVRIKG--PGPGRESAVRSLNNVGYK-------ITNIIDVTPIPHNGCRPPKKRRV 130
>sp|B2SQT2|RS11_XANOP 30S ribosomal protein S11 OS=Xanthomonas oryzae pv. oryzae (strain
PXO99A) GN=rpsK PE=3 SV=1
Length = 130
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
H+ NNT VT+TD +GN A+SG +G K + +AA+ AE GR A + G
Sbjct: 21 VAHVHASFNNTIVTITDRQGNALSWATSGGA-GFRGSRKSTPFAAQVAAEKAGRAALDYG 79
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+KS+ VR+KG + A+ S G+ I I D T PHNGCR PKKRR+
Sbjct: 80 VKSLEVRIKG--PGPGRESAVRSLNNVGYK-------ITNIIDVTPIPHNGCRPPKKRRV 130
>sp|Q2P007|RS11_XANOM 30S ribosomal protein S11 OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=rpsK PE=3 SV=1
Length = 130
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
H+ NNT VT+TD +GN A+SG +G K + +AA+ AE GR A + G
Sbjct: 21 VAHVHASFNNTIVTITDRQGNALSWATSGGA-GFRGSRKSTPFAAQVAAEKAGRAALDYG 79
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+KS+ VR+KG + A+ S G+ I I D T PHNGCR PKKRR+
Sbjct: 80 VKSLEVRIKG--PGPGRESAVRSLNNVGYK-------ITNIIDVTPIPHNGCRPPKKRRV 130
>sp|B2FQK6|RS11_STRMK 30S ribosomal protein S11 OS=Stenotrophomonas maltophilia (strain
K279a) GN=rpsK PE=3 SV=1
Length = 129
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 137 FVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMG 196
H+ NNT VT+TD +GN A+SG +G K + +AA+ AE GR A + G
Sbjct: 20 VAHVHASFNNTIVTITDRQGNALSWATSGGA-GFRGSRKSTPFAAQVAAEKAGRAALDYG 78
Query: 197 LKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
+KS+ VR+KG + A+ S G+ I I D T PHNGCR PKKRR+
Sbjct: 79 VKSLEVRIKG--PGPGRESAVRSLNNVGYK-------ITNIIDVTPIPHNGCRPPKKRRV 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,307,697
Number of Sequences: 539616
Number of extensions: 4098963
Number of successful extensions: 11102
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 8413
Number of HSP's gapped (non-prelim): 1006
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)