Query 025294
Match_columns 255
No_of_seqs 136 out of 809
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 07:28:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8n_K 30S ribosomal protein S 100.0 9.7E-46 3.3E-50 300.7 13.0 113 134-255 5-117 (117)
2 2vqe_K 30S ribosomal protein S 100.0 1.3E-44 4.4E-49 298.5 13.0 113 134-255 15-127 (129)
3 3bbn_K Ribosomal protein S11; 100.0 5.7E-44 2E-48 298.3 11.6 114 133-255 27-140 (140)
4 3j20_M 30S ribosomal protein S 100.0 2.6E-43 8.8E-48 293.5 14.5 113 134-255 13-137 (137)
5 3u5c_O RP59A, 40S ribosomal pr 100.0 9.6E-43 3.3E-47 290.0 7.0 116 130-254 9-133 (137)
6 2xzm_K RPS14E; ribosome, trans 100.0 2.5E-41 8.7E-46 285.4 12.7 116 131-255 24-148 (151)
7 3r8s_O 50S ribosomal protein L 97.2 0.0018 6.3E-08 52.1 9.2 88 134-222 21-111 (116)
8 3v2d_S 50S ribosomal protein L 96.9 0.0061 2.1E-07 48.9 9.2 84 135-222 23-107 (112)
9 1ovy_A 50S ribosomal protein L 96.4 0.0047 1.6E-07 50.1 5.7 87 135-222 28-115 (120)
10 1vq8_N 50S ribosomal protein L 96.4 0.027 9.1E-07 48.9 10.6 88 132-222 29-125 (187)
11 3j21_O 50S ribosomal protein L 96.0 0.015 5.1E-07 51.0 7.1 102 132-250 29-139 (203)
12 3bbo_Q Ribosomal protein L18; 95.4 0.01 3.5E-07 50.5 3.7 87 135-222 65-156 (161)
13 2zjr_L 50S ribosomal protein L 95.2 0.015 5E-07 46.8 3.7 83 135-222 26-109 (114)
14 2zkr_n 60S ribosomal protein L 95.0 0.19 6.5E-06 46.3 11.0 99 135-250 48-181 (297)
15 4a17_M RPL5, 60S ribosomal pro 92.8 0.52 1.8E-05 43.5 9.4 60 135-195 48-112 (301)
16 3u5e_D 60S ribosomal protein L 91.9 0.81 2.8E-05 42.2 9.4 60 135-195 48-112 (297)
17 3iz5_Q 60S ribosomal protein L 83.3 3.7 0.00013 38.0 8.0 52 143-195 57-113 (304)
18 2jvf_A De novo protein M7; tet 35.4 48 0.0016 25.0 4.3 29 180-208 61-89 (96)
19 2yh5_A DAPX protein, BAMC; lip 23.6 53 0.0018 26.0 3.0 30 132-161 74-103 (127)
No 1
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=100.00 E-value=9.7e-46 Score=300.66 Aligned_cols=113 Identities=37% Similarity=0.503 Sum_probs=109.2
Q ss_pred cceEEEEEccCCCeEEEEEcCCCCEEEEEeccCcccccCCCCCchhHHHHHHHHHHHHHHHcCCcEEEEEEEccCCCcch
Q 025294 134 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKK 213 (255)
Q Consensus 134 ~~~IlhI~sT~NNTiITlTD~~Gnvl~~~SsGs~~GFKg~rKsT~~AAq~aae~i~~kakelGik~V~V~vKG~G~gR~k 213 (255)
.++|+||++|+|||||||||++|+++.|.|+|++ ||||++|+||||||+||++++++|+++||+.|+|+|||+|+||
T Consensus 5 ~~gi~hI~as~NNTivtiTD~~G~~i~~~S~G~~-gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~v~vkG~G~Gr-- 81 (117)
T 3r8n_K 5 SDGVAHIHASFNNTIVTITDRQGNALGWATAGGS-GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGR-- 81 (117)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSCCSEEEETGGG-SCCGGGGSSHHHHHHHHHHHHHHHTTSCCCEEEEEEECSSSST--
T ss_pred ceeEEEEEcccCCEEEEEEcCCCCEEEEEcCCcc-ccCCCccCCHHHHHHHHHHHHHHHHHhCCcEEEEEEeCCCccH--
Confidence 4599999999999999999999999999999999 9999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcccCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 025294 214 RQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255 (255)
Q Consensus 214 ~aaIkaL~~G~~~~r~glkI~sI~D~TpiPhNGCRpkK~RRv 255 (255)
++||++|+. .|++|.+|+|+||+|||||||||+|||
T Consensus 82 ~~airaL~~------~Gl~I~~I~DvTpiphnGcRp~K~RRv 117 (117)
T 3r8n_K 82 ESTIRALNA------AGFRITNITDVTPIPHNGCRPPKKRRV 117 (117)
T ss_dssp THHHHHHHH------TTCEEEEEEECCCCCSSCSCCCCCCCC
T ss_pred HHHHHHHHh------CCCEEEEEEEeCCCCCCCCCCCCCCCC
Confidence 689999974 589999999999999999999999997
No 2
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=100.00 E-value=1.3e-44 Score=298.50 Aligned_cols=113 Identities=37% Similarity=0.421 Sum_probs=109.2
Q ss_pred cceEEEEEccCCCeEEEEEcCCCCEEEEEeccCcccccCCCCCchhHHHHHHHHHHHHHHHcCCcEEEEEEEccCCCcch
Q 025294 134 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKK 213 (255)
Q Consensus 134 ~~~IlhI~sT~NNTiITlTD~~Gnvl~~~SsGs~~GFKg~rKsT~~AAq~aae~i~~kakelGik~V~V~vKG~G~gR~k 213 (255)
..+++||++|+|||||||||++|+++.|.|||++ ||||++|+||||||+||+.++++|+++||+.|+|+|||+|+||
T Consensus 15 ~~gi~hI~as~NNTivtiTd~~G~~~~~~SaG~~-gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vkG~G~Gr-- 91 (129)
T 2vqe_K 15 ASGRAYIHASYNNTIVTITDPDGNPITWSSGGVI-GYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGR-- 91 (129)
T ss_dssp SEEEEEEEECSSCEEEEEECTTSCEEEECCTTTT-TCCSGGGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEESCCTTH--
T ss_pred cceEEEEEecCCCEEEEEEcCCCCEEEEEeccce-eEcCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCCCCH--
Confidence 4599999999999999999999999999999999 9999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhcccCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 025294 214 RQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255 (255)
Q Consensus 214 ~aaIkaL~~G~~~~r~glkI~sI~D~TpiPhNGCRpkK~RRv 255 (255)
++||++|+. .|++|.+|+|+||+|||||||||+||+
T Consensus 92 e~airaL~~------~Gl~I~~I~DvTpiPhnGcRp~K~RRv 127 (129)
T 2vqe_K 92 EQAIRALQA------SGLQVKSIVDDTPVPHNGCRPKKKFRK 127 (129)
T ss_dssp HHHHHHHHT------SSSEEEECEECCCCCSSCSCCCGGGCS
T ss_pred HHHHHHHHH------CCCEEEEEEEcCCCCCCCCCCCCCCCC
Confidence 799999975 589999999999999999999999996
No 3
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=5.7e-44 Score=298.32 Aligned_cols=114 Identities=32% Similarity=0.480 Sum_probs=109.7
Q ss_pred ccceEEEEEccCCCeEEEEEcCCCCEEEEEeccCcccccCCCCCchhHHHHHHHHHHHHHHHcCCcEEEEEEEccCCCcc
Q 025294 133 HSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKK 212 (255)
Q Consensus 133 ~~~~IlhI~sT~NNTiITlTD~~Gnvl~~~SsGs~~GFKg~rKsT~~AAq~aae~i~~kakelGik~V~V~vKG~G~gR~ 212 (255)
..++++||++|+|||||||||++|++++|.|||++ ||||++|+||||||+||+.++++|+++||+.|+|+|||+|+||
T Consensus 27 ~~~gi~hI~as~NNTivtiTD~~G~~i~~~SaG~~-GfKg~rksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~G~GR- 104 (140)
T 3bbn_K 27 IPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTC-GFRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGR- 104 (140)
T ss_dssp CCCCEEEEEECSSCEEEEEECSSSCEEEEEETTTS-SCCTTSCSSHHHHHHHHTSGGGTSTTTCCCEEEEEEESCSTTS-
T ss_pred ceeeEEEEEecCCCEEEEEEcCCCCEEEEEeccce-eEcccccCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCCCcH-
Confidence 34699999999999999999999999999999999 9999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHhcccCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 025294 213 KRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255 (255)
Q Consensus 213 k~aaIkaL~~G~~~~r~glkI~sI~D~TpiPhNGCRpkK~RRv 255 (255)
++||++|+. .|++|.+|+|+||+|||||||||+|||
T Consensus 105 -eaairaL~~------~Gl~I~~I~DvTpiPhnGcRppK~RRv 140 (140)
T 3bbn_K 105 -DAALRAIRR------SGILLSFVRDVTPMPHNGCRPPKKRRV 140 (140)
T ss_dssp -SHHHHHHHT------TTCEEEEEEECCCCCCSCCCCCCCCCC
T ss_pred -HHHHHHHHH------CCCEEEEEEEcCCCCCCCCCCCCCCCC
Confidence 689999975 589999999999999999999999997
No 4
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.6e-43 Score=293.45 Aligned_cols=113 Identities=28% Similarity=0.283 Sum_probs=105.3
Q ss_pred cceEEEEEccCCCeEEEEEcCCCC-EEEEEeccCcccccCCCCCchhHHHHHHHHHHHHHHHcCCcEEEEEEEcc-----
Q 025294 134 SSEFVHIKLMRNNTFVTVTDSKGN-KRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGF----- 207 (255)
Q Consensus 134 ~~~IlhI~sT~NNTiITlTD~~Gn-vl~~~SsGs~~GFKg~rKsT~~AAq~aae~i~~kakelGik~V~V~vKG~----- 207 (255)
.++|+||++|+|||||||||++|+ ++.|.|+|++ ||||++|+||||||+||++++++|+++||+.|+|+|||+
T Consensus 13 ~~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~-gfkg~~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~gg~~~ 91 (137)
T 3j20_M 13 KWGIAHIYSSFNNTIIHITDITGAETISRWSGGMV-VKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKS 91 (137)
T ss_dssp EEEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGT-CSCTTTSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCCSSSC
T ss_pred cceEEEEEcCCCCEEEEEEcCCCCEEEEEEcccee-eecCCccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCCCC
Confidence 679999999999999999999995 9999999999 999999999999999999999999999999999999995
Q ss_pred ---CCCcchHHHHHHHHhcccCCCCCCCeEEEEecCCCCCCCCCCC---CCCCC
Q 025294 208 ---TYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLP---KKRRI 255 (255)
Q Consensus 208 ---G~gR~k~aaIkaL~~G~~~~r~glkI~sI~D~TpiPhNGCRpk---K~RRv 255 (255)
|+|| ++||++|+. .|++|.+|+|+||||||||||| |.|||
T Consensus 92 ~~pG~Gr--esairaL~~------~Gl~I~~I~DvTpiPhnGcRp~g~rr~rrv 137 (137)
T 3j20_M 92 KTPGPGA--QAAIRALAR------AGLKIGRVEDVTPIPHDGTRPKGGRRGRRV 137 (137)
T ss_dssp CSCCTHH--HHHHHHHHH------HTCEEEEEEECCCCCSSCCCCSCCSSSSCC
T ss_pred cCCCCcH--HHHHHHHHh------CCCEEEEEEEcCCCCCCCCCCCCCCCCCCC
Confidence 5654 899999975 5899999999999999999999 55554
No 5
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=100.00 E-value=9.6e-43 Score=290.01 Aligned_cols=116 Identities=28% Similarity=0.321 Sum_probs=108.1
Q ss_pred ccCccceEEEEEccCCCeEEEEEcCCCCEEEEEeccCcccccCCC-CCchhHHHHHHHHHHHHHHHcCCcEEEEEE----
Q 025294 130 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGP-KMSRYAAEATAEHVGRLARNMGLKSVVVRV---- 204 (255)
Q Consensus 130 ~~e~~~~IlhI~sT~NNTiITlTD~~Gnvl~~~SsGs~~GFKg~r-KsT~~AAq~aae~i~~kakelGik~V~V~v---- 204 (255)
+.|..++|+||++|+|||||||||++|+++.|.|+|++ |||+.+ |+||||||+||++++++|+++||+.|+|+|
T Consensus 9 ~~~~~~gi~hI~asfNNTivtvTD~~G~~~~~~ssG~~-gfKg~r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vra~g 87 (137)
T 3u5c_O 9 DNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGM-KVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATG 87 (137)
T ss_dssp --CCCEEECCEEEETTEEEECCEETTSSSCCCCCBTTT-TSCCSTTTTCHHHHHHHHHHHHHHHHHHTCCEEECEEECSC
T ss_pred cCceeeEEEEEEccCCCEEEEEEcCCCCEEEEEeCCCc-EEeCCcccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeccC
Confidence 34567799999999999999999999999999999999 999987 899999999999999999999999999999
Q ss_pred ----EccCCCcchHHHHHHHHhcccCCCCCCCeEEEEecCCCCCCCCCCCCCCC
Q 025294 205 ----KGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRR 254 (255)
Q Consensus 205 ----KG~G~gR~k~aaIkaL~~G~~~~r~glkI~sI~D~TpiPhNGCRpkK~RR 254 (255)
||+|+|| ++||++|+. .|++|.+|+|+||||||||||||+||
T Consensus 88 g~~~kgpG~Gr--~sairaL~~------~Gl~I~~I~DvTpiPhnGcRp~K~RR 133 (137)
T 3u5c_O 88 GTRTKTPGPGG--QAALRALAR------SGLRIGRIEDVTPVPSDSTRKKGGRR 133 (137)
T ss_dssp TTSCCSCCGGG--HHHHHHHHT------TTCEECCCEECCCCCSSCSCCTTCTT
T ss_pred CCcccCCCcch--HHHHHHHHh------CCCEEEEEEEcCCCCCCCCCCCCCCC
Confidence 5788876 899999974 68999999999999999999999998
No 6
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=100.00 E-value=2.5e-41 Score=285.38 Aligned_cols=116 Identities=24% Similarity=0.286 Sum_probs=105.7
Q ss_pred cCccceEEEEEccCCCeEEEEEcCCCCEEEEEeccCcccccCC-CCCchhHHHHHHHHHHHHHHHcCCcEEEEEEEcc--
Q 025294 131 VEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGG-PKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGF-- 207 (255)
Q Consensus 131 ~e~~~~IlhI~sT~NNTiITlTD~~Gnvl~~~SsGs~~GFKg~-rKsT~~AAq~aae~i~~kakelGik~V~V~vKG~-- 207 (255)
.|..++|+||++|+|||||||||.+|+++.|+|+|.+ +||+. +|+||||||+||++++++|+++||+.|+|+|||+
T Consensus 24 ~~~~~gi~hI~asfNNTiVtiTD~~G~~~~~~ssgg~-~~k~~r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vkG~gg 102 (151)
T 2xzm_K 24 NENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTGGM-KVKADREESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGG 102 (151)
T ss_dssp TCCCEEEEEEEBCSSCBCCEEECTTCCSEEEECCHHH-HCSSGGGGSCHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCT
T ss_pred CCeeeeEEEEEccCCCEEEEEECCCCCEEEEEecCcc-eEeCCCCcCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCC
Confidence 3556799999999999999999999998888888888 66665 5999999999999999999999999999999988
Q ss_pred ------CCCcchHHHHHHHHhcccCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 025294 208 ------TYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255 (255)
Q Consensus 208 ------G~gR~k~aaIkaL~~G~~~~r~glkI~sI~D~TpiPhNGCRpkK~RRv 255 (255)
|+|| ++||++|+. .|++|.+|+|+||||||||||||+||+
T Consensus 103 ~~~kgpG~Gr--esairaL~~------~GlkI~~I~DvTpiPhNGcRp~K~RRv 148 (151)
T 2xzm_K 103 VETKQPGPGA--QSALRALAR------SGMKIGRIEDVTPIPTDSTRREGGRRG 148 (151)
T ss_dssp TSCCSCCSHH--HHHHHHHHH------TSCEEEEEEECCCCCSSCCCCSSCTTC
T ss_pred CCccCCCccH--HHHHHHHHH------CCCEEEEEEEeCCCCCCCCCCCCCCCC
Confidence 5554 899999975 589999999999999999999999996
No 7
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=97.22 E-value=0.0018 Score=52.09 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=65.7
Q ss_pred cceEEEEEccCCCeEEEEEcCC-CCEEEEEeccCcccccCC--CCCchhHHHHHHHHHHHHHHHcCCcEEEEEEEccCCC
Q 025294 134 SSEFVHIKLMRNNTFVTVTDSK-GNKRIGASSGCLPELKGG--PKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYF 210 (255)
Q Consensus 134 ~~~IlhI~sT~NNTiITlTD~~-Gnvl~~~SsGs~~GFKg~--rKsT~~AAq~aae~i~~kakelGik~V~V~vKG~G~g 210 (255)
.+|-+.|+-|.+++...|.|.. |.++.+.|+-.. .+++. ......||..+++.++++|++.||+.|..-..|+-+.
T Consensus 21 ~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~-~~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~~yh 99 (116)
T 3r8s_O 21 GATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEK-AIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYH 99 (116)
T ss_dssp TCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSH-HHHTTCSCSSSHHHHHHHHHHHHHHHHTTTCCCCEEECTTSCSS
T ss_pred CCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCch-hhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCccc
Confidence 4588999999999999999965 568888887766 66653 3456789999999999999999999988776565443
Q ss_pred cchHHHHHHHHh
Q 025294 211 KKKRQAIMSFRE 222 (255)
Q Consensus 211 R~k~aaIkaL~~ 222 (255)
-.-.++..++++
T Consensus 100 GrV~Ala~~are 111 (116)
T 3r8s_O 100 GRVQALADAARE 111 (116)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 211233345554
No 8
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=96.86 E-value=0.0061 Score=48.92 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=63.3
Q ss_pred ceEEEEEccCCCeEEEEEcCCC-CEEEEEeccCcccccCCCCCchhHHHHHHHHHHHHHHHcCCcEEEEEEEccCCCcch
Q 025294 135 SEFVHIKLMRNNTFVTVTDSKG-NKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKK 213 (255)
Q Consensus 135 ~~IlhI~sT~NNTiITlTD~~G-nvl~~~SsGs~~GFKg~rKsT~~AAq~aae~i~~kakelGik~V~V~vKG~G~gR~k 213 (255)
.|-+.|+-|.+++...|.|..| .++.+.|+-.. .+| .....||+.+++.++++|++.||+.|..-..|+-+.-.-
T Consensus 23 rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~-~~k---~~n~~AA~~vG~llA~ra~~~GI~~vvfDrgg~~yhGrV 98 (112)
T 3v2d_S 23 RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLAL-KLK---GNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGRV 98 (112)
T ss_dssp CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTT-TCC---CCHHHHHHHHHHHHHHHHHTTTCCBCEEECTTSCSCSST
T ss_pred CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecch-hcc---CCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCcccHHH
Confidence 5889999999999999998665 56777777766 664 456779999999999999999999987765554433212
Q ss_pred HHHHHHHHh
Q 025294 214 RQAIMSFRE 222 (255)
Q Consensus 214 ~aaIkaL~~ 222 (255)
.++..++++
T Consensus 99 ~Ala~~are 107 (112)
T 3v2d_S 99 KALAEGARE 107 (112)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345556665
No 9
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=96.41 E-value=0.0047 Score=50.10 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=62.9
Q ss_pred ceEEEEEccCCCeEEEEEcCCC-CEEEEEeccCcccccCCCCCchhHHHHHHHHHHHHHHHcCCcEEEEEEEccCCCcch
Q 025294 135 SEFVHIKLMRNNTFVTVTDSKG-NKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKK 213 (255)
Q Consensus 135 ~~IlhI~sT~NNTiITlTD~~G-nvl~~~SsGs~~GFKg~rKsT~~AAq~aae~i~~kakelGik~V~V~vKG~G~gR~k 213 (255)
.|-+.|+-|.+++++.|.|..| .++.+.|+=.. .++........||..+++.++++|.+.||+.|..-..|+-++-.-
T Consensus 28 rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~-~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~~yhgrV 106 (120)
T 1ovy_A 28 RPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDK-EFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRV 106 (120)
T ss_dssp CCSEEEEEETTEEEEEEECCSSCCCEEEESTTST-TTCSSCTTSHHHHHHHHHHHHHHHHHHSSSCCCCCSTTCSSCSST
T ss_pred CCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCch-hhCcCCCCcHHHHHHHHHHHHHHHHHCCCCEEEEecCCccccHHH
Confidence 4788899999999999998765 56777777655 566333567889999999999999999999876544343322212
Q ss_pred HHHHHHHHh
Q 025294 214 RQAIMSFRE 222 (255)
Q Consensus 214 ~aaIkaL~~ 222 (255)
.+++.++.+
T Consensus 107 ~ala~~are 115 (120)
T 1ovy_A 107 KALADAARE 115 (120)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455556655
No 10
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=96.38 E-value=0.027 Score=48.90 Aligned_cols=88 Identities=15% Similarity=0.074 Sum_probs=63.1
Q ss_pred CccceEEEEEccCCCeEEEEE--cCCCC-EEEEEeccCccccc-C--CCCCchhHHHHHHHHHHHHHHHcCCcEEEEEEE
Q 025294 132 EHSSEFVHIKLMRNNTFVTVT--DSKGN-KRIGASSGCLPELK-G--GPKMSRYAAEATAEHVGRLARNMGLKSVVVRVK 205 (255)
Q Consensus 132 e~~~~IlhI~sT~NNTiITlT--D~~Gn-vl~~~SsGs~~GFK-g--~rKsT~~AAq~aae~i~~kakelGik~V~V~vK 205 (255)
....+-+.|+.|.+++++.|. |..|. ++.+.|+-.. . | + .......||..++..++++|++.||+.+.+-..
T Consensus 29 ~~~rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~-~-k~~~k~~~~N~~AA~~vG~llA~Ral~kGI~~vvfDrg 106 (187)
T 1vq8_N 29 KSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDL-A-EYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIG 106 (187)
T ss_dssp TTCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGG-G-GGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEECT
T ss_pred hcCCCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccch-h-ccccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 345689999999999999999 66555 7777777655 3 3 2 124667889999999999999999999865554
Q ss_pred ccC---CCcchHHHHHHHHh
Q 025294 206 GFT---YFKKKRQAIMSFRE 222 (255)
Q Consensus 206 G~G---~gR~k~aaIkaL~~ 222 (255)
|+= +|| -.++++++.+
T Consensus 107 g~~yh~GgR-V~Ala~gAre 125 (187)
T 1vq8_N 107 LNSPTPGSK-VFAIQEGAID 125 (187)
T ss_dssp TSCCCTTCH-HHHHHHHHHH
T ss_pred CceeccchH-HHHHHHHhhc
Confidence 432 133 2455556665
No 11
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.98 E-value=0.015 Score=51.04 Aligned_cols=102 Identities=13% Similarity=0.100 Sum_probs=72.9
Q ss_pred CccceEEEEEccCCCeEEEEEc--CC-CCEEEEEeccCccccc-C--CCCCchhHHHHHHHHHHHHHHHcCCcEEEEEEE
Q 025294 132 EHSSEFVHIKLMRNNTFVTVTD--SK-GNKRIGASSGCLPELK-G--GPKMSRYAAEATAEHVGRLARNMGLKSVVVRVK 205 (255)
Q Consensus 132 e~~~~IlhI~sT~NNTiITlTD--~~-Gnvl~~~SsGs~~GFK-g--~rKsT~~AAq~aae~i~~kakelGik~V~V~vK 205 (255)
.+..+-+-|+.|.+++++.|.| .. |.++.+.|+--+ ..| + .......||..++..++++|++.||..|.+-..
T Consensus 29 ~~~kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El-~lk~g~~~~~~N~~AA~~vG~llA~Ral~kGI~~vvfDrg 107 (203)
T 3j21_O 29 KSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTREL-IRDFGWKGHCGNTPSAYLLGLLIGYKAKQAGIEEAILDIG 107 (203)
T ss_dssp TTCCCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTT-SSSSSCCSCTTSHHHHHHHHHHSSSSTTSSCCCCCEEECC
T ss_pred hcCCCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccch-hhhhcccCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence 3456899999999999999996 66 457777777665 322 2 234567788999999999999999999877766
Q ss_pred ccCC---CcchHHHHHHHHhcccCCCCCCCeEEEEecCCCCCCCCCCC
Q 025294 206 GFTY---FKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLP 250 (255)
Q Consensus 206 G~G~---gR~k~aaIkaL~~G~~~~r~glkI~sI~D~TpiPhNGCRpk 250 (255)
|+-+ || -.++++++.+ .|| .+||+--|-|
T Consensus 108 g~~y~~hgR-V~Ala~gAre------~GL---------~iPhs~~~fp 139 (203)
T 3j21_O 108 LHPPVRGSS-VFAVLKGAVD------AGL---------NVPHSPEIFP 139 (203)
T ss_dssp SSCCCTTSH-HHHHHHHHHH------HTC---------CCCCCSSCSC
T ss_pred cceeccCcc-hhhhhhhccc------CCe---------ecccCCccCC
Confidence 6654 44 2455556665 366 4577765554
No 12
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=95.43 E-value=0.01 Score=50.47 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=61.6
Q ss_pred ceEEEEEccCCCeEEEEEcC-CCCEEEEEeccCcccccC----CCCCchhHHHHHHHHHHHHHHHcCCcEEEEEEEccCC
Q 025294 135 SEFVHIKLMRNNTFVTVTDS-KGNKRIGASSGCLPELKG----GPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTY 209 (255)
Q Consensus 135 ~~IlhI~sT~NNTiITlTD~-~Gnvl~~~SsGs~~GFKg----~rKsT~~AAq~aae~i~~kakelGik~V~V~vKG~G~ 209 (255)
++-|.|+-|.+++...|.|. .|.++...|+-.. .+++ .....-.||..+++.++++|++.||+.|..--.|+-+
T Consensus 65 rPRL~V~rSnkhIyAQvIdd~~g~tLasASTlek-~lk~~l~~g~~~n~~AA~~VG~liAeRA~e~GI~~VvFDRgg~~Y 143 (161)
T 3bbo_Q 65 RPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQK-SISEELDYSSSPTIEVAKKVGEVIASACLEKGITKVAFDRGGYPY 143 (161)
T ss_dssp CCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHH-HHHHCCTTCCSSSHHHHHHHHHHSSSHHHHTSSCCCCCCCSSSCS
T ss_pred CCEEEEEecCCeEEEEEEECCCCEEEEEEeCCcH-HHHhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence 47889999999999999865 4668888888443 3342 2356778999999999999999999998665444433
Q ss_pred CcchHHHHHHHHh
Q 025294 210 FKKKRQAIMSFRE 222 (255)
Q Consensus 210 gR~k~aaIkaL~~ 222 (255)
.-.-.+...++++
T Consensus 144 hGRVkAladaaRe 156 (161)
T 3bbo_Q 144 HGRVKALADAARE 156 (161)
T ss_dssp SSTTHHHHHHHTT
T ss_pred hHHHHHHHHHHHH
Confidence 2211333345544
No 13
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=95.19 E-value=0.015 Score=46.85 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=58.9
Q ss_pred ceEEEEEccCCCeEEEEEcCCCC-EEEEEeccCcccccCCCCCchhHHHHHHHHHHHHHHHcCCcEEEEEEEccCCCcch
Q 025294 135 SEFVHIKLMRNNTFVTVTDSKGN-KRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKK 213 (255)
Q Consensus 135 ~~IlhI~sT~NNTiITlTD~~Gn-vl~~~SsGs~~GFKg~rKsT~~AAq~aae~i~~kakelGik~V~V~vKG~G~gR~k 213 (255)
.|-+.|+-|.+++...|.|..|. ++.+.|+-. + .......||..+++.++++|++.||+.|..-..|+-++-.-
T Consensus 26 rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~e---l--~~~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~~yhgrV 100 (114)
T 2zjr_L 26 RLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA---L--KSGNKTDTAAAVGKALAAAAAEKGIKQVVFDRGSYKYHGRV 100 (114)
T ss_dssp SEEECCCTTSSCCCCCEEETTTTEECCCCCSCS---C--CTTCSSSSHHHHHHHHHHHHHTTCCCCCEECCCSSCSCSHH
T ss_pred CCEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH---h--cCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCccccHHH
Confidence 48899999999999999987766 555444432 3 23455678999999999999999999987665554433212
Q ss_pred HHHHHHHHh
Q 025294 214 RQAIMSFRE 222 (255)
Q Consensus 214 ~aaIkaL~~ 222 (255)
.+++.++.+
T Consensus 101 ~Ala~~are 109 (114)
T 2zjr_L 101 KALADAARE 109 (114)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344445555
No 14
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=94.99 E-value=0.19 Score=46.34 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=68.6
Q ss_pred ceEEEEEccCCCeEEEEEcCC--C-CEEEEEeccCcc--cccCCCCCchhHHHHHHHHHHHHHHHc--------------
Q 025294 135 SEFVHIKLMRNNTFVTVTDSK--G-NKRIGASSGCLP--ELKGGPKMSRYAAEATAEHVGRLARNM-------------- 195 (255)
Q Consensus 135 ~~IlhI~sT~NNTiITlTD~~--G-nvl~~~SsGs~~--GFKg~rKsT~~AAq~aae~i~~kakel-------------- 195 (255)
.+-+-|..|..++++.|.|.. | .++.++|+--++ |.++ ......||+.++.-++++|.+.
T Consensus 48 kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~kyg~k~-g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~~ 126 (297)
T 2zkr_n 48 KYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKV-GLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVT 126 (297)
T ss_dssp SEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCS-CSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSS
T ss_pred CceEEEEEecCcEEEEEEeccCCCCEEEEEeecCccccccccc-CCCcHHHHHHHHHHHHHHHHHhhccchhhcCccccc
Confidence 378888899999999999977 5 567777775552 2222 2355678899999999999988
Q ss_pred -------------CCcEEEEEEEccCC---CcchHHHHHHHHhcccCCCCCCCeEEEEecCCCCCCCCCCC
Q 025294 196 -------------GLKSVVVRVKGFTY---FKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLP 250 (255)
Q Consensus 196 -------------Gik~V~V~vKG~G~---gR~k~aaIkaL~~G~~~~r~glkI~sI~D~TpiPhNGCRpk 250 (255)
|+..+.+=+-|.-. || -.+++++..+ .|| .+||+-.|-|
T Consensus 127 g~~~~ve~~~~~~gi~~vvfDrGl~ryttggR-Vfa~akGArD------gGL---------~~Phs~~~fp 181 (297)
T 2zkr_n 127 GDEYNVESIDGQPGAFTCYLDAGLARTTTGNK-VFGALKGAVD------GGL---------SIPHSTKRFP 181 (297)
T ss_dssp SCCCCCSSSCSSSCCCBEEEECTTSCCCTTCH-HHHHHHHHHH------TTC---------BCCCCGGGSC
T ss_pred cccccccccccCCCceEEEEecCCcccCCCch-HHHHHHHHHh------cCc---------ccCCCCccCC
Confidence 77777665544443 23 2455556655 466 3688877655
No 15
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=92.81 E-value=0.52 Score=43.55 Aligned_cols=60 Identities=18% Similarity=-0.036 Sum_probs=46.4
Q ss_pred ceEEEEEccCCCeEEEEEcC--CC-CEEEEEeccCcccccCC--CCCchhHHHHHHHHHHHHHHHc
Q 025294 135 SEFVHIKLMRNNTFVTVTDS--KG-NKRIGASSGCLPELKGG--PKMSRYAAEATAEHVGRLARNM 195 (255)
Q Consensus 135 ~~IlhI~sT~NNTiITlTD~--~G-nvl~~~SsGs~~GFKg~--rKsT~~AAq~aae~i~~kakel 195 (255)
.+-+-|+-|..++++.|.|. .| .++.++|+--+ ...+- ......||..++..|+++|++.
T Consensus 48 kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El-~~~g~k~~~~N~~AAy~vG~LiAeRAl~k 112 (301)
T 4a17_M 48 KYRLVARATNTRIIAQIVYATLKCDRVLCAADSYEL-KRFGVSTGLASYAAAYATGLLLARRLLKQ 112 (301)
T ss_dssp CEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHH-HHTTCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccc-hhccccCCCCcHHHHHHHHHHHHHHHHHh
Confidence 47888889999999999986 56 67777887655 33332 2345678899999999999988
No 16
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=91.86 E-value=0.81 Score=42.21 Aligned_cols=60 Identities=18% Similarity=0.055 Sum_probs=46.2
Q ss_pred ceEEEEEccCCCeEEEEEcC--CC-CEEEEEeccCcccccCC--CCCchhHHHHHHHHHHHHHHHc
Q 025294 135 SEFVHIKLMRNNTFVTVTDS--KG-NKRIGASSGCLPELKGG--PKMSRYAAEATAEHVGRLARNM 195 (255)
Q Consensus 135 ~~IlhI~sT~NNTiITlTD~--~G-nvl~~~SsGs~~GFKg~--rKsT~~AAq~aae~i~~kakel 195 (255)
.+-+-|+-|..++++.|.|. .| .++.++|+--+ ...+- ......||..++..|+++|++.
T Consensus 48 kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El-~k~g~k~~~~N~~AAy~vG~LiAeRAl~k 112 (297)
T 3u5e_D 48 KYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHEL-PRYGITHGLTNWAAAYATGLLIARRTLQK 112 (297)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGG-GGGTCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecch-hhcccCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 47778888899999999997 45 67777887666 32332 2345678899999999999987
No 17
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=83.34 E-value=3.7 Score=37.98 Aligned_cols=52 Identities=17% Similarity=0.004 Sum_probs=40.6
Q ss_pred cCCCeEEEEEcC--CC-CEEEEEeccCcccccCC--CCCchhHHHHHHHHHHHHHHHc
Q 025294 143 MRNNTFVTVTDS--KG-NKRIGASSGCLPELKGG--PKMSRYAAEATAEHVGRLARNM 195 (255)
Q Consensus 143 T~NNTiITlTD~--~G-nvl~~~SsGs~~GFKg~--rKsT~~AAq~aae~i~~kakel 195 (255)
|..++++.|.|. .| .++.++|+--+ ...|- .-....||+.++..++++|++.
T Consensus 57 SNrhIyaQII~~~i~GD~tLaSAsS~EL-~kyG~k~g~~N~aAAy~tGlLiA~RAl~k 113 (304)
T 3iz5_Q 57 TNKDITAQIVYATIAGDIVMAAAYSHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLTL 113 (304)
T ss_dssp CSSCCEEEEEEEETTEEEEEEEEETTTG-GGGSCCSCTTSHHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEEEecCCCCCEEEEEEecCch-hhcccCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 888999999986 56 67888888777 44442 2345678899999999999998
No 18
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=35.44 E-value=48 Score=25.02 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEEccC
Q 025294 180 AAEATAEHVGRLARNMGLKSVVVRVKGFT 208 (255)
Q Consensus 180 AAq~aae~i~~kakelGik~V~V~vKG~G 208 (255)
-|...-+-+++.++.+|++.|.|++.|.-
T Consensus 61 qakelleliarllqklgykdinvrvngte 89 (96)
T 2jvf_A 61 QAKELLELIARLLQKLGYKDINVRVNGTE 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEcCEE
Confidence 34445577888899999999999999853
No 19
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=23.57 E-value=53 Score=26.02 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=24.8
Q ss_pred CccceEEEEEccCCCeEEEEEcCCCCEEEE
Q 025294 132 EHSSEFVHIKLMRNNTFVTVTDSKGNKRIG 161 (255)
Q Consensus 132 e~~~~IlhI~sT~NNTiITlTD~~Gnvl~~ 161 (255)
+...+.|.+...-|.|-|+|+|.+|+++..
T Consensus 74 ~~~~Y~i~v~~~g~~t~V~v~d~~G~p~~~ 103 (127)
T 2yh5_A 74 ASGDYKLQVGDLDNRSSLQFIDPKGHTLTQ 103 (127)
T ss_dssp CSEEEEEEEEEETTEEEEEEECTTSCBCCH
T ss_pred CCCCEEEEEEeCCCceEEEEECCCCCCCCH
Confidence 334589999998999999999999987653
Done!