RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 025294
         (255 letters)



>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli
           [TaxId: 562]}
          Length = 117

 Score =  103 bits (258), Expect = 9e-29
 Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 9/118 (7%)

Query: 138 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGL 197
            HI    NNT VT+TD +GN     ++      +G  K + +AA+  AE      +  G+
Sbjct: 9   AHIHASFNNTIVTITDRQGNALG-WATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGI 67

Query: 198 KSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 255
           K++ V VKG    ++     +    GF        I  I D T  PHNGCR PKKRR+
Sbjct: 68  KNLEVMVKGPGPGRESTIRAL-NAAGF-------RITNITDVTPIPHNGCRPPKKRRV 117


>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus
           thermophilus [TaxId: 274]}
          Length = 119

 Score = 95.3 bits (237), Expect = 1e-25
 Identities = 42/118 (35%), Positives = 55/118 (46%), Gaps = 11/118 (9%)

Query: 138 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGL 197
            +I    NNT VT+TD  GN    +S G     KG  K + YAA+  A    + A   G+
Sbjct: 9   AYIHASYNNTIVTITDPDGNPITWSSGGV-IGYKGSRKGTPYAAQLAALDAAKKAMAYGM 67

Query: 198 KSVVVRVKGFTYFKKKRQAIMSF-REGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRR 254
           +SV V V+G    ++  QAI +    G         +  I D T  PHNGCR  KK R
Sbjct: 68  QSVDVIVRGTGAGRE--QAIRALQASGL-------QVKSIVDDTPVPHNGCRPKKKFR 116


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 926,368
Number of extensions: 41457
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 3
Length of query: 255
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,268,006
Effective search space: 218097032
Effective search space used: 218097032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)