BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025297
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AMH|A Chain A, Crystal Structure Of Maf-Like Protein Tbru21784aaa From
T.Brucei
Length = 207
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 34 IILGSSSMPRRKILAEMGYE----FSVMAADIDEKSIRKEKPEDLVMXXXXXXXXXXXSK 89
+I+G+SS R +L E + F ++ DIDEK+ R P
Sbjct: 12 MIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADP------------------ 53
Query: 90 LQITDSQLGNVKQTILIVADTAEAILNRLPIGDYIKEAEPTILITGDQVVVYEGVIREKP 149
++T+S + +L +A + PI + P I +T DQVVV +REKP
Sbjct: 54 FELTESIARAKMKAVL-----EKARQHSPPI------SGPAIALTFDQVVVKGDEVREKP 102
Query: 150 SSREEARRFIKDYSGGQCATVSSVLVTNLKTGFRKGEWDRVEIQFHEIPDEVIEKLIEEG 209
S E+ R FI YSGG TV++ + + T + E F + D+++E+ +E G
Sbjct: 103 LSTEQCRSFIASYSGGGVRTVATYALCVVGTENVLVAHNETETFFSKFGDDIVERTLERG 162
Query: 210 IVLNVAGGLIIEHSLILPYVKQVVGAMDSVMGLPKAVTEKLIKE 253
+N AGGL++E + +V ++VG V G+ AV EKL+ +
Sbjct: 163 ACMNSAGGLVVEDEDMSRHVVRIVGTSYGVRGMEPAVVEKLLSQ 206
>pdb|1EX2|A Chain A, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EX2|B Chain B, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EXC|A Chain A, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
pdb|1EXC|B Chain B, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
Length = 189
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 44/222 (19%)
Query: 34 IILGSSSMPRRKILAEMGYEFSVMAADIDEKSIRKEKPEDLVMXXXXXXXXXXXSKLQIT 93
+IL S S R+++L + +S++ ++++EK R PE+
Sbjct: 5 LILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEE-------------------- 44
Query: 94 DSQLGNVKQTILIVADTAEAILNRLPIGDYIKEAEPTILITGDQVVVYEGVIREKPSSRE 153
NV+ + A+A+ + P I+I D +V +G KP +E
Sbjct: 45 -----NVQ---WLAKQKAKAVADLHP---------HAIVIGADTMVCLDGECLGKPQDQE 87
Query: 154 EARRFIKDYSGGQCATVSSVLVT--NLKTGFRKGEWDRVEIQFHEIPDEVIEKLIEEGIV 211
EA ++ SG + +++V + N F +D+ E+ F + +E I IE
Sbjct: 88 EAASMLRRLSGRSHSVITAVSIQAENHSETF----YDKTEVAFWSLSEEEIWTYIETKEP 143
Query: 212 LNVAGGLIIEHSLILPYVKQVVGAMDSVMGLPKAVTEKLIKE 253
++ AG I+ L +VK++ G SVMGLP + T + ++
Sbjct: 144 MDKAGAYGIQGRGAL-FVKKIDGDYYSVMGLPISKTMRALRH 184
>pdb|4HEB|A Chain A, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
pdb|4HEB|B Chain B, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
Length = 210
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 44/222 (19%)
Query: 34 IILGSSSMPRRKILAEMGYEFSVMAADIDEKSIRKEKPEDLVMXXXXXXXXXXXSKLQIT 93
+IL S S R+++L + +S++ ++++EK R PE+
Sbjct: 26 LILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEE-------------------- 65
Query: 94 DSQLGNVKQTILIVADTAEAILNRLPIGDYIKEAEPTILITGDQVVVYEGVIREKPSSRE 153
NV+ + A+A+ + P I+I D +V +G KP +E
Sbjct: 66 -----NVQ---WLAKQKAKAVADLHP---------HAIVIGADTMVCLDGECLGKPQDQE 108
Query: 154 EARRFIKDYSGGQCATVSSVLVT--NLKTGFRKGEWDRVEIQFHEIPDEVIEKLIEEGIV 211
EA ++ SG + +++V + N F +D+ E+ F + +E I IE
Sbjct: 109 EAASMLRRLSGRSHSVITAVSIQAENHSETF----YDKTEVAFWSLSEEEIWTYIETKEP 164
Query: 212 LNVAGGLIIEHSLILPYVKQVVGAMDSVMGLPKAVTEKLIKE 253
++ AG I+ L +VK++ G SVMGLP + T + ++
Sbjct: 165 MDKAGAYGIQGRGAL-FVKKIDGDYYSVMGLPISKTMRALRH 205
>pdb|2P5X|A Chain A, Crystal Structure Of Maf Domain Of Human N-Acetylserotonin
O- Methyltransferase-Like Protein
pdb|2P5X|B Chain B, Crystal Structure Of Maf Domain Of Human N-Acetylserotonin
O- Methyltransferase-Like Protein
Length = 230
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 102/230 (44%), Gaps = 43/230 (18%)
Query: 33 KIILGSSSMPRRKILAEMGYEFSVMAADIDEKSIRKE--KPEDLVMXXXXXXXXXXXSKL 90
+++L S+S R++IL+ G F V+ + EK + P M
Sbjct: 5 RVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAME------------- 51
Query: 91 QITDSQLGNVKQTILIVADTAEAILNRLPIGDYIKEAE-PTILITGDQVVVYEGVIREKP 149
KQ L VA NRL Y K+ P ++I D +V G+I EKP
Sbjct: 52 --------TAKQKALEVA-------NRL----YQKDLRAPDVVIGADTIVTVGGLILEKP 92
Query: 150 SSREEARRFIKDYSGGQCATVSSVLVTNLKTGFRKGE------WDRVEIQFHEIPDEVIE 203
+++A R + SG + + + V + + + + + ++ +++F E+ +E++
Sbjct: 93 VDKQDAYRMLSRLSGREHSVFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLW 152
Query: 204 KLIEEGIVLNVAGGLIIEHSLILPYVKQVVGAMDSVMGLP-KAVTEKLIK 252
+ + G ++ AGG I+ +L V+ V G +V+G P ++L+K
Sbjct: 153 EYVHSGEPMDKAGGYGIQ-ALGGMLVESVHGDFLNVVGFPLNHFCKQLVK 201
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 184 KGEW-DRVEIQFHEIPDEVIEKLIEEGIVLNVAGGLIIEHSLILPYVKQVVGAMDSVMGL 242
K EW + ++ E+PD+ E+LI+E + G+++ H + + ++ V
Sbjct: 284 KKEWIEEIKKNMPELPDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKE---- 339
Query: 243 PKAVTEKLIKEAL 255
PK + LI + L
Sbjct: 340 PKGIVNWLINDLL 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,583,699
Number of Sequences: 62578
Number of extensions: 243833
Number of successful extensions: 477
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 8
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)