BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025298
         (255 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
           Group-1 Pollen Allergen From Maize
          Length = 245

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 106/243 (43%), Gaps = 33/243 (13%)

Query: 29  WTQAHATFYGGSDASGTM--GGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMC 86
           W  A AT+YG  + +G    GGACG  N+    Y   TA  +  +F DG  CG CY + C
Sbjct: 19  WLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 78

Query: 87  DYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIG----- 141
             K +      G  VT+  T+      A              HFD++  A+  +      
Sbjct: 79  KEKPEC----SGNPVTVYITDMNYEPIA------------PYHFDLSGKAFGSLAKPGLN 122

Query: 142 --IYRGGIVPVLYQRVPCKKPGGVRFTINGRD----YFELVLISNVAGAGSIKSAYIKGS 195
             I   GI+ V ++RV CK P G +   +        +  VL+  VA  G I    I+  
Sbjct: 123 DKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDK 182

Query: 196 -STNWMAMSRNWGANWQSN--AYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASS 252
            S  W  M  +WGA W+ +    L G   S ++T+  G+  I  +V+P+NW     + S+
Sbjct: 183 LSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVYTSN 241

Query: 253 IQF 255
           +QF
Sbjct: 242 VQF 244


>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
 pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
          Length = 241

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 35/241 (14%)

Query: 29  WTQAHATFYGGSDASGTM--GGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMC 86
           W  A +T+YG    +G    GGACGY ++    +   T   +T +F  G  CG C+ I C
Sbjct: 19  WLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKC 78

Query: 87  DYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDM---AYPAWQKIG-- 141
              +    C  G  V +  T+          DN     P   HFD+   A+ A  K G  
Sbjct: 79  ---TKPEAC-SGEPVVVHITD----------DNEEPIAP--YHFDLSGHAFGAMAKKGDE 122

Query: 142 --IYRGGIVPVLYQRVPCKKPGGVRFTIN-----GRDYFELVLISNVAGAGSIKSAYIKG 194
             +   G + + ++RV CK P G + T +       +Y  L L+  V G G + +  IK 
Sbjct: 123 QKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLAL-LVKYVNGDGDVVAVDIKE 181

Query: 195 SSTN-WMAMSRNWGANWQSNA--YLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFAS 251
              + W+ +  +WGA W+ +    L G   + + TT  G      +V+P  W    S+ S
Sbjct: 182 KGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYES 240

Query: 252 S 252
            
Sbjct: 241 K 241


>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
           Domain (Ipp5c) Of Spsynaptojanin
 pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
           Domain (Ipp5c) Of Spsynaptojanin In Complex With
           Inositol (1,4)-Bisphosphate And Calcium Ion
          Length = 347

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 11/43 (25%)

Query: 125 PPRQHFDMA-----------YPAWQKIGIYRGGIVPVLYQRVP 156
           PP   FD+             PAW    +YRG +VP  YQ VP
Sbjct: 258 PPTYKFDIGTDIYDTSDKHRVPAWTDRILYRGELVPHSYQSVP 300


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,451,744
Number of Sequences: 62578
Number of extensions: 373576
Number of successful extensions: 872
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 15
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)