Query 025298
Match_columns 255
No_of_seqs 145 out of 1016
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:25:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 1.1E-75 2.5E-80 520.6 28.8 255 1-255 1-256 (256)
2 PLN00050 expansin A; Provision 100.0 5.4E-71 1.2E-75 488.9 26.5 226 26-255 22-247 (247)
3 PLN03023 Expansin-like B1; Pro 100.0 1.9E-64 4E-69 446.8 24.7 212 24-255 20-246 (247)
4 PLN03024 Putative EG45-like do 100.0 3.1E-28 6.6E-33 196.1 12.7 102 30-154 22-125 (125)
5 COG4305 Endoglucanase C-termin 100.0 1.3E-26 2.8E-31 193.3 19.4 195 27-255 28-230 (232)
6 smart00837 DPBB_1 Rare lipopro 99.9 7.1E-28 1.5E-32 182.8 7.5 87 64-152 1-87 (87)
7 PLN00115 pollen allergen group 99.9 3.1E-24 6.6E-29 170.9 11.1 88 162-255 25-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 1.4E-22 3E-27 152.3 9.4 77 163-240 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 3.4E-19 7.3E-24 132.2 6.5 76 64-152 1-78 (78)
10 PF00967 Barwin: Barwin family 99.1 1.2E-10 2.5E-15 91.5 3.8 59 75-157 57-119 (119)
11 PF07249 Cerato-platanin: Cera 98.1 1.1E-05 2.4E-10 64.6 8.0 66 63-156 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 98.0 6.7E-05 1.4E-09 65.3 10.6 96 32-160 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.8 0.00014 3.1E-09 64.3 9.6 60 78-158 119-178 (233)
14 PRK10672 rare lipoprotein A; P 97.3 0.0031 6.7E-08 59.3 11.2 59 77-156 114-172 (361)
15 PF02015 Glyco_hydro_45: Glyco 90.7 0.31 6.7E-06 42.4 3.9 54 64-135 70-123 (201)
16 cd02854 Glycogen_branching_enz 74.2 7.8 0.00017 29.7 5.0 48 187-234 16-76 (99)
17 PF03404 Mo-co_dimer: Mo-co ox 61.8 14 0.0003 29.9 4.3 50 183-232 38-106 (131)
18 cd02110 SO_family_Moco_dimer S 60.9 18 0.00039 33.6 5.4 50 183-232 234-293 (317)
19 TIGR02588 conserved hypothetic 55.9 95 0.0021 25.1 8.0 34 161-195 34-73 (122)
20 PRK10564 maltose regulon perip 47.7 64 0.0014 30.0 6.6 39 149-194 47-86 (303)
21 KOG0427 Ubiquitin conjugating 41.3 24 0.00052 28.9 2.5 44 209-255 26-69 (161)
22 PF10417 1-cysPrx_C: C-termina 41.0 16 0.00034 23.5 1.1 11 237-247 10-20 (40)
23 cd02859 AMPKbeta_GBD_like AMP- 37.4 1.4E+02 0.003 21.6 5.9 50 186-237 11-63 (79)
24 cd02861 E_set_proteins_like E 36.6 75 0.0016 22.9 4.4 45 188-233 14-60 (82)
25 cd02855 Glycogen_branching_enz 36.3 1.3E+02 0.0028 22.2 5.8 34 200-233 49-85 (106)
26 PLN00177 sulfite oxidase; Prov 36.3 97 0.0021 29.8 6.2 25 180-204 291-316 (393)
27 cd02113 bact_SoxC_Moco bacteri 34.1 68 0.0015 30.0 4.7 50 183-232 236-294 (326)
28 PRK13159 cytochrome c-type bio 31.2 59 0.0013 27.3 3.4 29 220-248 73-102 (155)
29 PRK13701 psiB plasmid SOS inhi 29.1 1.7E+02 0.0036 24.2 5.5 45 145-193 57-105 (144)
30 PF08770 SoxZ: Sulphur oxidati 29.0 1E+02 0.0022 23.7 4.1 45 185-236 53-97 (100)
31 cd02111 eukary_SO_Moco molybdo 29.0 1.5E+02 0.0033 28.1 6.2 53 180-232 271-339 (365)
32 PRK10301 hypothetical protein; 29.0 67 0.0015 25.6 3.3 27 142-168 95-124 (124)
33 KOG4192 Uncharacterized conser 27.9 92 0.002 25.2 3.8 79 121-203 35-123 (134)
34 cd02114 bact_SorA_Moco sulfite 27.5 1E+02 0.0023 29.2 4.8 50 183-232 286-345 (367)
35 PF03100 CcmE: CcmE; InterPro 26.9 69 0.0015 25.7 3.0 30 219-248 71-101 (131)
36 PRK13254 cytochrome c-type bio 25.1 99 0.0021 25.6 3.7 29 220-248 72-101 (148)
37 PRK13150 cytochrome c-type bio 24.6 85 0.0018 26.5 3.2 29 220-248 79-108 (159)
38 COG2372 CopC Uncharacterized p 22.9 93 0.002 25.3 3.0 27 142-168 96-125 (127)
39 PRK13165 cytochrome c-type bio 22.1 1E+02 0.0022 26.0 3.2 29 220-248 79-108 (160)
40 PF02922 CBM_48: Carbohydrate- 21.1 2.4E+02 0.0052 19.9 4.7 48 187-234 22-79 (85)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=1.1e-75 Score=520.63 Aligned_cols=255 Identities=83% Similarity=1.469 Sum_probs=238.3
Q ss_pred ChhhhHHHHHHHHHHhhhc-cccccCCCCeeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCCccCc
Q 025298 1 MAKTLLTSAILIQLCCLSV-SIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCG 79 (255)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG 79 (255)
|.++|+-+++|++|||.+- +.+.+..++|++++|||||++++.++++|||||+++...+++.++||+|+++|++|.+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CG 80 (256)
T PLN00193 1 MSKSLLGLAILLQFCCYLFINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCG 80 (256)
T ss_pred CchhhHHHHHHHHHHHHHHhhccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCcccc
Confidence 7889998899998877544 556666779999999999999988899999999998888899999999999999999999
Q ss_pred ceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEecCC
Q 025298 80 QCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKK 159 (255)
Q Consensus 80 ~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~ 159 (255)
+||||+|.....++.|.+|++|+|+|||.||++|.+|.+|++||++++.|||||.+||.+||....|+|+|+||||+|++
T Consensus 81 aCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~ 160 (256)
T PLN00193 81 QCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKK 160 (256)
T ss_pred CeEEEECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEecccc
Confidence 99999996433467898878999999999999999999999999988899999999999999999999999999999999
Q ss_pred CCceeEEEcCcCceeEEEEEeecCCcceeEEEEEcCCCceeecccccCceEEeCCCCCCcceEEEEEecCCcEEEeCccc
Q 025298 160 PGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVV 239 (255)
Q Consensus 160 ~gni~~~v~g~~~w~~v~v~n~~g~~~I~sVei~~~~~~W~~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~i~~~~vi 239 (255)
+|||+|+|++++||++|+|.|++|+++|++|+||+++++|++|+|+||++|+++.++.++||+||||+.+|+++++.|||
T Consensus 161 ~G~i~f~v~gn~y~~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~vi 240 (256)
T PLN00193 161 HGGVRFTINGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVV 240 (256)
T ss_pred CCCcEEEEcCCccEEEEEEEEeCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECcee
Confidence 99999999999999999999999999999999999878899999999999999988887899999999999999999999
Q ss_pred CCCCCCCcEEeccCCC
Q 025298 240 PSNWHFGQSFASSIQF 255 (255)
Q Consensus 240 p~~w~~G~~y~s~vqf 255 (255)
|++|++|++|+++|||
T Consensus 241 Pa~W~~G~ty~s~vqf 256 (256)
T PLN00193 241 PANWGFGQTFSSSVQF 256 (256)
T ss_pred CCCCCCCCeEecCccC
Confidence 9999999999999998
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=5.4e-71 Score=488.88 Aligned_cols=226 Identities=69% Similarity=1.293 Sum_probs=215.1
Q ss_pred CCCeeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEEEE
Q 025298 26 PSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITA 105 (255)
Q Consensus 26 ~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V 105 (255)
.++|..++|||||.+++.|+++|||||+++..++++.++||+|+++|++|.+||+||||+|.+. +.+|.++ +|+|+|
T Consensus 22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~--~~~C~~g-sV~V~i 98 (247)
T PLN00050 22 GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVND--NIWCLPG-SIIITA 98 (247)
T ss_pred CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCC--CcccCCC-cEEEEE
Confidence 4689999999999999999999999999988889999999999999999999999999999765 5679875 899999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEecCCCCceeEEEcCcCceeEEEEEeecCCc
Q 025298 106 TNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAG 185 (255)
Q Consensus 106 ~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~v~g~~~w~~v~v~n~~g~~ 185 (255)
||.||++++.|++|++||++++.|||||.+||.+||....|+|+|+||||+|+++|||+|+|++++||++|+|.|++|++
T Consensus 99 td~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~~vlv~nv~G~g 178 (247)
T PLN00050 99 TNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAG 178 (247)
T ss_pred ecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeEEEEEEEcCCCc
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEcCCCceeecccccCceEEeCCCCCCcceEEEEEecCCcEEEeCcccCCCCCCCcEEeccCCC
Q 025298 186 SIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF 255 (255)
Q Consensus 186 ~I~sVei~~~~~~W~~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~i~~~~vip~~w~~G~~y~s~vqf 255 (255)
+|++|+|++++++|++|+|+||++|+.+.++.++||+||||+.+|+++++.||||++|++|++|++. ||
T Consensus 179 di~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty~~~-~f 247 (247)
T PLN00050 179 DIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGM-QF 247 (247)
T ss_pred cEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeEecC-cC
Confidence 9999999998778999999999999998878878999999999999999999999999999999995 98
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=1.9e-64 Score=446.81 Aligned_cols=212 Identities=28% Similarity=0.613 Sum_probs=190.5
Q ss_pred cCCCCeeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEE
Q 025298 24 FSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTI 103 (255)
Q Consensus 24 ~~~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v 103 (255)
...++|.+++|||||++++.|+.+|||||+++..+.++.++||++ ++|++|.+||+||||+|.+ +++|.++ +|+|
T Consensus 20 ~~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~---~~~C~~~-~v~V 94 (247)
T PLN03023 20 CKSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA---PNLCSDD-GVNV 94 (247)
T ss_pred hhcCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC---CCccCCC-CeEE
Confidence 345569999999999999999999999999988788889999998 9999999999999999976 5789875 8999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhccc-------ccCCccceeEEEEecCCCC-ceeEEEc--Cc-Cc
Q 025298 104 TATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGI-------YRGGIVPVLYQRVPCKKPG-GVRFTIN--GR-DY 172 (255)
Q Consensus 104 ~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~G~v~i~~r~V~C~~~g-ni~~~v~--g~-~~ 172 (255)
+|||.||. + +.|||||.+||.+||. ...|+|+|+||||||.++| ||+|+|+ ++ ++
T Consensus 95 ~iTd~~~~-----------~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~ 160 (247)
T PLN03023 95 VVTDYGEG-----------D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPD 160 (247)
T ss_pred EEEeCCCC-----------C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCc
Confidence 99999985 3 5899999999999998 4679999999999999999 9999998 33 77
Q ss_pred eeEEEEEeecCCcceeEEEEEcCC-CceeecccccCceEEeCCCCCCcceEEEE--EecCCcE-EEeCcccCCCCCCCcE
Q 025298 173 FELVLISNVAGAGSIKSAYIKGSS-TNWMAMSRNWGANWQSNAYLNGQSLSFKV--TTTDGET-RIFPNVVPSNWHFGQS 248 (255)
Q Consensus 173 w~~v~v~n~~g~~~I~sVei~~~~-~~W~~m~r~~gn~W~~~~~~~g~p~~vRv--Ts~~G~~-i~~~~vip~~w~~G~~ 248 (255)
|++|+|.|++|+++|++||||+++ .+|++|+|+||++|+++.+|+| ||+||+ |..+|++ |++.||||++|++|++
T Consensus 161 yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nViPa~Wk~G~T 239 (247)
T PLN03023 161 YLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVIPSDWKAGVA 239 (247)
T ss_pred eEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECceeCCCCCCCCE
Confidence 999999999999999999999965 6899999999999999988887 555555 4557754 8999999999999999
Q ss_pred EeccCCC
Q 025298 249 FASSIQF 255 (255)
Q Consensus 249 y~s~vqf 255 (255)
|+++|||
T Consensus 240 Y~s~vq~ 246 (247)
T PLN03023 240 YDSNIQL 246 (247)
T ss_pred Eeccccc
Confidence 9999998
No 4
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.96 E-value=3.1e-28 Score=196.05 Aligned_cols=102 Identities=32% Similarity=0.637 Sum_probs=86.7
Q ss_pred eEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCCccCcceEEEEecCCC--CCccccCCCeEEEEEec
Q 025298 30 TQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKS--DTRWCIKGTSVTITATN 107 (255)
Q Consensus 30 ~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~--~p~~C~~g~sv~v~V~D 107 (255)
.+|+||||++++ .||| |++ .+++.++||+|+++|++|..||+||||+|.++. ++++|. +++|+|+|+|
T Consensus 22 ~~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~-gksV~V~VtD 91 (125)
T PLN03024 22 TPGIATFYTSYT-----PSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCT-GKSVTVKIVD 91 (125)
T ss_pred cceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCcccccccc-CCeEEEEEEc
Confidence 379999998755 3899 444 346789999999999999999999999997642 245787 4799999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEE
Q 025298 108 FCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQR 154 (255)
Q Consensus 108 ~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~ 154 (255)
+||+. |. .|||||++||++||++..|+|+|+|.+
T Consensus 92 ~CP~~----------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 92 HCPSG----------CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred CCCCC----------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 99952 75 599999999999999999999999974
No 5
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.3e-26 Score=193.26 Aligned_cols=195 Identities=19% Similarity=0.310 Sum_probs=157.6
Q ss_pred CCeeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCC----ccCcceEEEEecCCCCCccccCCCeEE
Q 025298 27 SGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDG----ASCGQCYRIMCDYKSDTRWCIKGTSVT 102 (255)
Q Consensus 27 ~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~ev~c~~~~~p~~C~~g~sv~ 102 (255)
++-+.|.|||-+... .+||=-... .+-+..+.|+|+++-+-| +.-|+.++|.+ |+ | +.+
T Consensus 28 d~~f~G~ATyTgsGY----sGGAflLDP---I~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG-----PK----G-~TT 90 (232)
T COG4305 28 DDLFEGYATYTGSGY----SGGAFLLDP---IPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG-----PK----G-KTT 90 (232)
T ss_pred ccccceeEEEecccc----cCceEEecC---cCCcceeeecCHHHcccCCchhhhccceEEEEC-----CC----C-ceE
Confidence 355779999977533 367775443 344567999999988755 57999999987 44 4 678
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEecCCCCceeEEEc--CcCceeEEEEEe
Q 025298 103 ITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTIN--GRDYFELVLISN 180 (255)
Q Consensus 103 v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~v~--g~~~w~~v~v~n 180 (255)
|.|||..|+. . .+.||||+.||.+|+++.+|+|+|+||.|+-|..||+.+++| ++.||.++||+|
T Consensus 91 VYVTDlYPeg-----------a--sGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRn 157 (232)
T COG4305 91 VYVTDLYPEG-----------A--SGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRN 157 (232)
T ss_pred EEEecccccc-----------c--ccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeec
Confidence 9999999994 3 479999999999999999999999999999999999999999 478999999999
Q ss_pred ecCCcceeEEEEEcCCCceeecccccCceEEeCCCCCCcceEEEEEecCCcEEEeC-cccCCCCC-CCcEEeccCCC
Q 025298 181 VAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFP-NVVPSNWH-FGQSFASSIQF 255 (255)
Q Consensus 181 ~~g~~~I~sVei~~~~~~W~~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~i~~~-~vip~~w~-~G~~y~s~vqf 255 (255)
+. .||.++|+... ++|..|.+.+||+|.-.+ +..+|+.+|+||+.|++++.. -.+|..=. ---+-.++|||
T Consensus 158 H~--yPV~KlE~~qd-g~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~asSKaY~V~G~VQF 230 (232)
T COG4305 158 HK--YPVMKLEYEQD-GKWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKSASSKAYTVPGHVQF 230 (232)
T ss_pred cc--CceEEEEEecC-CeEeeccccccceeeccc-cCCCceEEEEeecccceeecccccccccccCCceeecceeec
Confidence 97 89999999874 689999999999998544 444599999999999999976 35553211 11234566776
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.95 E-value=7.1e-28 Score=182.81 Aligned_cols=87 Identities=69% Similarity=1.367 Sum_probs=81.2
Q ss_pred EEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccc
Q 025298 64 TAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIY 143 (255)
Q Consensus 64 ~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~ 143 (255)
+||+|+++|++|.+||+||||+|.+. |..|.++++|+|+|||+||+++..|+++++||++++.|||||.+||.+||++
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~--~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~ 78 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDS--PKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQY 78 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCC--CCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhh
Confidence 48999999999999999999999653 6789887799999999999999999999999998889999999999999999
Q ss_pred cCCccceeE
Q 025298 144 RGGIVPVLY 152 (255)
Q Consensus 144 ~~G~v~i~~ 152 (255)
..|+|+|+|
T Consensus 79 ~~Gvi~v~y 87 (87)
T smart00837 79 KAGIVPVKY 87 (87)
T ss_pred cCCEEeeEC
Confidence 999999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.91 E-value=3.1e-24 Score=170.87 Aligned_cols=88 Identities=22% Similarity=0.453 Sum_probs=79.4
Q ss_pred ceeEEEc--CcCceeEEEEEeecCCcceeEEEEEcCC-Ccee-ecccccCceEEeCC--CCCCcceEEEEEecCCcEEEe
Q 025298 162 GVRFTIN--GRDYFELVLISNVAGAGSIKSAYIKGSS-TNWM-AMSRNWGANWQSNA--YLNGQSLSFKVTTTDGETRIF 235 (255)
Q Consensus 162 ni~~~v~--g~~~w~~v~v~n~~g~~~I~sVei~~~~-~~W~-~m~r~~gn~W~~~~--~~~g~p~~vRvTs~~G~~i~~ 235 (255)
||+|+|+ +|++||++++ |. +|.+|||++++ .+|+ +|+|+||+.|++++ +|+| ||+||+|+.+|+++++
T Consensus 25 ~v~F~V~~gSnp~yL~ll~-~~----dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G~~~va 98 (118)
T PLN00115 25 EVTFKVGKGSSSTSLELVT-NV----AISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGGGYRVV 98 (118)
T ss_pred ceEEEECCCCCcceEEEEE-eC----CEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCCCEEEE
Confidence 9999999 4689997765 43 69999999986 6899 99999999999764 6787 9999999999999999
Q ss_pred CcccCCCCCCCcEEeccCCC
Q 025298 236 PNVVPSNWHFGQSFASSIQF 255 (255)
Q Consensus 236 ~~vip~~w~~G~~y~s~vqf 255 (255)
+||||++|++|++|++++||
T Consensus 99 ~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 99 DDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CceECCCCCCCCEEeccccC
Confidence 99999999999999999998
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.88 E-value=1.4e-22 Score=152.26 Aligned_cols=77 Identities=45% Similarity=0.829 Sum_probs=63.9
Q ss_pred eeEEEc--CcCceeEEEEEeecCCcceeEEEEEcCC-CceeecccccCceEEeC-CCCCCcceEEEEEecC-CcEEEeCc
Q 025298 163 VRFTIN--GRDYFELVLISNVAGAGSIKSAYIKGSS-TNWMAMSRNWGANWQSN-AYLNGQSLSFKVTTTD-GETRIFPN 237 (255)
Q Consensus 163 i~~~v~--g~~~w~~v~v~n~~g~~~I~sVei~~~~-~~W~~m~r~~gn~W~~~-~~~~g~p~~vRvTs~~-G~~i~~~~ 237 (255)
|+|+|+ +++||++|+|.|++|.++|++|||++++ .+|++|+|+||++|+++ .+++ +||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~-~pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPG-GPLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS---SSEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcC-CCEEEEEEEcCCCeEEEEec
Confidence 689998 4699999999999999999999999877 56999999999999998 5555 59999999977 99999999
Q ss_pred ccC
Q 025298 238 VVP 240 (255)
Q Consensus 238 vip 240 (255)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.78 E-value=3.4e-19 Score=132.22 Aligned_cols=76 Identities=36% Similarity=0.746 Sum_probs=61.1
Q ss_pred EEEechhccCCCccCcceEEEEecCCCC-CccccCC-CeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcc
Q 025298 64 TAALSTALFNDGASCGQCYRIMCDYKSD-TRWCIKG-TSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIG 141 (255)
Q Consensus 64 ~aA~s~~~~~~g~~CG~C~ev~c~~~~~-p~~C~~g-~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia 141 (255)
+||++..+|++|.+||+||+++|..... ...|..+ ++|+|+|+|+||+ |. ..|||||+.||++||
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~~--~~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------CP--PNHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------SS--SSEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------Cc--CCEEEeCHHHHHHhC
Confidence 5899999999999999999999933210 1127653 8999999999998 86 489999999999999
Q ss_pred cccCCccceeE
Q 025298 142 IYRGGIVPVLY 152 (255)
Q Consensus 142 ~~~~G~v~i~~ 152 (255)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.06 E-value=1.2e-10 Score=91.52 Aligned_cols=59 Identities=29% Similarity=0.589 Sum_probs=44.3
Q ss_pred CccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhccc----ccCCccce
Q 025298 75 GASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGI----YRGGIVPV 150 (255)
Q Consensus 75 g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~----~~~G~v~i 150 (255)
-..||+|++|+.+.. |++++|+|+|+|+. ++|||.+.+|.+|-. ...|.+.|
T Consensus 57 q~~CGkClrVTNt~t--------ga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V 112 (119)
T PF00967_consen 57 QDSCGKCLRVTNTAT--------GAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIV 112 (119)
T ss_dssp GGGTT-EEEEE-TTT----------EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEE
T ss_pred cccccceEEEEecCC--------CcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEE
Confidence 468999999998765 78999999999886 589999999999952 36789999
Q ss_pred eEEEEec
Q 025298 151 LYQRVPC 157 (255)
Q Consensus 151 ~~r~V~C 157 (255)
+|++|+|
T Consensus 113 ~y~fV~C 119 (119)
T PF00967_consen 113 DYEFVDC 119 (119)
T ss_dssp EEEEE--
T ss_pred EEEEEcC
Confidence 9999999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.15 E-value=1.1e-05 Score=64.59 Aligned_cols=66 Identities=20% Similarity=0.416 Sum_probs=47.0
Q ss_pred eEEEech-hccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcc
Q 025298 63 STAALST-ALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIG 141 (255)
Q Consensus 63 ~~aA~s~-~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia 141 (255)
.|.+... +-| |...||.|+||+-. |++|.|..+|.-+ ..|+|+.+||++|.
T Consensus 44 ~IGg~~~V~gW-nS~~CGtC~~lty~----------g~si~vlaID~a~-----------------~gfnis~~A~n~LT 95 (119)
T PF07249_consen 44 YIGGAPAVAGW-NSPNCGTCWKLTYN----------GRSIYVLAIDHAG-----------------GGFNISLDAMNDLT 95 (119)
T ss_dssp SEEEETT--ST-T-TTTT-EEEEEET----------TEEEEEEEEEE-S-----------------SSEEE-HHHHHHHH
T ss_pred eeccccccccC-CCCCCCCeEEEEEC----------CeEEEEEEEecCC-----------------CcccchHHHHHHhc
Confidence 3555554 346 45789999999982 5899999999733 46999999999997
Q ss_pred c---ccCCccceeEEEEe
Q 025298 142 I---YRGGIVPVLYQRVP 156 (255)
Q Consensus 142 ~---~~~G~v~i~~r~V~ 156 (255)
+ ...|+|+++|++|+
T Consensus 96 ~g~a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 96 NGQAVELGRVDATYTQVD 113 (119)
T ss_dssp TS-CCCC-EEE-EEEEE-
T ss_pred CCcccceeEEEEEEEEcC
Confidence 5 36799999999997
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=98.00 E-value=6.7e-05 Score=65.27 Aligned_cols=96 Identities=20% Similarity=0.167 Sum_probs=69.8
Q ss_pred EEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCC
Q 025298 32 AHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPP 111 (255)
Q Consensus 32 g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~ 111 (255)
|.|+|||..-.. ...|.|=.- . ...|+||=.+ ...|...+|+...+ |++|+|+|.|++|-
T Consensus 1 G~ASwYg~~f~G--~~TAnGe~y--~--~~~~tAAHkt------LPlgT~V~VtNl~n--------grsviVrVnDRGPf 60 (208)
T TIGR00413 1 GLASWYGPKFHG--RKTANGEVY--N--MKALTAAHKT------LPFNTYVKVTNLHN--------NRSVIVRINDRGPF 60 (208)
T ss_pred CEEeEeCCCCCC--CcCCCCeec--C--CCcccccccc------CCCCCEEEEEECCC--------CCEEEEEEeCCCCC
Confidence 679999864210 123444211 1 1124555443 25889999998765 79999999999996
Q ss_pred CCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEecCCC
Q 025298 112 NFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKP 160 (255)
Q Consensus 112 ~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~ 160 (255)
. +.--+|||..|+.+|+-...|+.+|+.+.+.....
T Consensus 61 ~-------------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 61 S-------------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred C-------------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCCC
Confidence 2 23689999999999999999999999999988754
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=0.00014 Score=64.27 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=52.2
Q ss_pred CcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEec
Q 025298 78 CGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPC 157 (255)
Q Consensus 78 CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C 157 (255)
=|.-.+|+..++ |++|+|+|.|++|- .. .-.||||..|+++|+-...|+.+|..+.+.+
T Consensus 119 ~~t~v~VtNl~N--------grsvvVRINDRGPf------------~~-gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~ 177 (233)
T COG0797 119 LPTYVRVTNLDN--------GRSVVVRINDRGPF------------VS-GRIIDLSKAAADKLGMIRSGVAKVRIEVLGV 177 (233)
T ss_pred CCCEEEEEEccC--------CcEEEEEEeCCCCC------------CC-CcEeEcCHHHHHHhCCccCceEEEEEEEecc
Confidence 356789998776 79999999999995 32 3689999999999999999999999999997
Q ss_pred C
Q 025298 158 K 158 (255)
Q Consensus 158 ~ 158 (255)
.
T Consensus 178 ~ 178 (233)
T COG0797 178 A 178 (233)
T ss_pred c
Confidence 6
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.27 E-value=0.0031 Score=59.32 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=48.6
Q ss_pred cCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEe
Q 025298 77 SCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVP 156 (255)
Q Consensus 77 ~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~ 156 (255)
--|...+|+...+ |++|+|+|.|++|-. +.--||||..|+++|+-...+.|+|+.-.|.
T Consensus 114 Plps~vrVtNl~n--------grsvvVrVnDRGP~~-------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v~ 172 (361)
T PRK10672 114 PIPSYVRVTNLAN--------GRMIVVRINDRGPYG-------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIVA 172 (361)
T ss_pred CCCCEEEEEECCC--------CcEEEEEEeCCCCCC-------------CCCeeEcCHHHHHHhCCCCCceEEEEEEeeC
Confidence 4688999998775 799999999999962 2368999999999998777777777777763
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=90.72 E-value=0.31 Score=42.43 Aligned_cols=54 Identities=26% Similarity=0.380 Sum_probs=30.7
Q ss_pred EEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChh
Q 025298 64 TAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYP 135 (255)
Q Consensus 64 ~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~ 135 (255)
+||.+-.-......|++|||++=+++. ..||+.+|++++.=-. . ..+||||..+
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~-----l~GKkmiVQ~tNtG~d------------l-g~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGP-----LKGKKMIVQVTNTGGD------------L-GSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SST-----TTT-EEEEEEEEE-TT------------T-TTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCC-----cCCCEeEEEecccCCC------------C-CCCeEEEEeC
Confidence 455552211122679999999987641 1379999999975111 1 3589999854
No 16
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=74.23 E-value=7.8 Score=29.74 Aligned_cols=48 Identities=19% Similarity=0.391 Sum_probs=34.5
Q ss_pred eeEEEEEcCCCcee----ecccccCceEEeC--CC-------CCCcceEEEEEecCCcEEE
Q 025298 187 IKSAYIKGSSTNWM----AMSRNWGANWQSN--AY-------LNGQSLSFKVTTTDGETRI 234 (255)
Q Consensus 187 I~sVei~~~~~~W~----~m~r~~gn~W~~~--~~-------~~g~p~~vRvTs~~G~~i~ 234 (255)
-++|+|.++-..|. +|.|....+|++. .. ..+..+.++|+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 46677776545675 4888777899864 21 2567899999998888764
No 17
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=61.79 E-value=14 Score=29.89 Aligned_cols=50 Identities=16% Similarity=0.377 Sum_probs=28.8
Q ss_pred CCc-ceeEEEEEcCC-Cceeeccccc--C-----------ceEEeCC--CC-CCc-ceEEEEEecCCcE
Q 025298 183 GAG-SIKSAYIKGSS-TNWMAMSRNW--G-----------ANWQSNA--YL-NGQ-SLSFKVTTTDGET 232 (255)
Q Consensus 183 g~~-~I~sVei~~~~-~~W~~m~r~~--g-----------n~W~~~~--~~-~g~-p~~vRvTs~~G~~ 232 (255)
|.+ +|++|||...+ .+|++..... . -.|++.= +. .|. -+.+|-||.+|.+
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~~ 106 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGNV 106 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-B
T ss_pred CCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeeccccc
Confidence 335 89999999876 5699766432 1 1466531 11 232 5666778888753
No 18
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=60.92 E-value=18 Score=33.60 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=32.1
Q ss_pred CCcceeEEEEEcCCC-ceeecccccC-------ceEEeCCCC-CC-cceEEEEEecCCcE
Q 025298 183 GAGSIKSAYIKGSST-NWMAMSRNWG-------ANWQSNAYL-NG-QSLSFKVTTTDGET 232 (255)
Q Consensus 183 g~~~I~sVei~~~~~-~W~~m~r~~g-------n~W~~~~~~-~g-~p~~vRvTs~~G~~ 232 (255)
|...|++|||+.+++ +|++..-... -.|++.-.+ .| --+.+|.+|.+|++
T Consensus 234 g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~ 293 (317)
T cd02110 234 GGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNV 293 (317)
T ss_pred CCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCc
Confidence 335799999998875 8998765321 155554222 23 25677778888854
No 19
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=55.86 E-value=95 Score=25.05 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=26.2
Q ss_pred CceeEEEc------CcCceeEEEEEeecCCcceeEEEEEcC
Q 025298 161 GGVRFTIN------GRDYFELVLISNVAGAGSIKSAYIKGS 195 (255)
Q Consensus 161 gni~~~v~------g~~~w~~v~v~n~~g~~~I~sVei~~~ 195 (255)
..+++.++ +.+||.-+.|.|.+| ...++|+|.+.
T Consensus 34 p~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~ge 73 (122)
T TIGR02588 34 AVLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGE 73 (122)
T ss_pred CeEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEE
Confidence 35666664 246999999999976 78899999853
No 20
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.69 E-value=64 Score=30.02 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=24.3
Q ss_pred ceeEEEEecCCCCceeEEEc-CcCceeEEEEEeecCCcceeEEEEEc
Q 025298 149 PVLYQRVPCKKPGGVRFTIN-GRDYFELVLISNVAGAGSIKSAYIKG 194 (255)
Q Consensus 149 ~i~~r~V~C~~~gni~~~v~-g~~~w~~v~v~n~~g~~~I~sVei~~ 194 (255)
++.|..|+ .+..+.|.+. +++.+ ...++.++|.+.+|-.
T Consensus 47 ~l~wq~l~--~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPa 86 (303)
T PRK10564 47 QLTWQPVD--QSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPA 86 (303)
T ss_pred cCCceEcc--CCCceEEEeCCCCcce-----ecCCCcccEEEEEccc
Confidence 46788876 3467888887 56655 1234456676666653
No 21
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=41.25 E-value=24 Score=28.91 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=34.7
Q ss_pred eEEeCCCCCCcceEEEEEecCCcEEEeCcccCCCCCCCcEEeccCCC
Q 025298 209 NWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF 255 (255)
Q Consensus 209 ~W~~~~~~~g~p~~vRvTs~~G~~i~~~~vip~~w~~G~~y~s~vqf 255 (255)
-|+.+ ++.| |.+|+++.-.+|+|.-.-.|.-.-+|.+|+-.+.|
T Consensus 26 e~q~~-pP~G--~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F 69 (161)
T KOG0427|consen 26 EWQNN-PPTG--FKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEF 69 (161)
T ss_pred HHhcC-CCCc--ceeecccchheeEEEEecCCceeecCcEEEEEEec
Confidence 46643 4554 89999999999999988888888888888876655
No 22
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=41.03 E-value=16 Score=23.49 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=9.6
Q ss_pred cccCCCCCCCc
Q 025298 237 NVVPSNWHFGQ 247 (255)
Q Consensus 237 ~vip~~w~~G~ 247 (255)
.+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 48899999986
No 23
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=37.37 E-value=1.4e+02 Score=21.59 Aligned_cols=50 Identities=26% Similarity=0.449 Sum_probs=33.0
Q ss_pred ceeEEEEEcCCCcee---ecccccCceEEeCCCCCCcceEEEEEecCCcEEEeCc
Q 025298 186 SIKSAYIKGSSTNWM---AMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPN 237 (255)
Q Consensus 186 ~I~sVei~~~~~~W~---~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~i~~~~ 237 (255)
.-++|+|.|+=.+|. +|.|..+. |...-.+..+.+.+|+.- +|+++...+
T Consensus 11 ~a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~V-dg~w~~d~~ 63 (79)
T cd02859 11 GGKEVYVTGSFDNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFIV-DGEWRHSPD 63 (79)
T ss_pred CCcEEEEEEEcCCCCccccceECCCC-cEEEEEcCCCCEEEEEEE-CCEEEeCCC
Confidence 357899998656676 48887655 775434432367777764 688887653
No 24
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=36.55 E-value=75 Score=22.92 Aligned_cols=45 Identities=31% Similarity=0.542 Sum_probs=28.0
Q ss_pred eEEEEEcCCCce--eecccccCceEEeCCCCCCcceEEEEEecCCcEE
Q 025298 188 KSAYIKGSSTNW--MAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETR 233 (255)
Q Consensus 188 ~sVei~~~~~~W--~~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~i 233 (255)
++|+|.++=..| .+|.|.....|++.-++..+.+..|+. ++|++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPGRYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCCcEEEEEE-ECCEEe
Confidence 788888764567 468887656788653333224556655 356665
No 25
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=36.30 E-value=1.3e+02 Score=22.21 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=20.6
Q ss_pred eeccccc-CceEEe--CCCCCCcceEEEEEecCCcEE
Q 025298 200 MAMSRNW-GANWQS--NAYLNGQSLSFKVTTTDGETR 233 (255)
Q Consensus 200 ~~m~r~~-gn~W~~--~~~~~g~p~~vRvTs~~G~~i 233 (255)
.+|.|.. ..+|.. +....+..+.+|++..+|.+.
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 3677755 667874 322233468999987555543
No 26
>PLN00177 sulfite oxidase; Provisional
Probab=36.26 E-value=97 Score=29.80 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=18.0
Q ss_pred eecCCcceeEEEEEcCC-Cceeeccc
Q 025298 180 NVAGAGSIKSAYIKGSS-TNWMAMSR 204 (255)
Q Consensus 180 n~~g~~~I~sVei~~~~-~~W~~m~r 204 (255)
..+|...|+.|||...+ .+|+....
T Consensus 291 wsggg~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 291 LSGGGRGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred ECCCCccEEEEEEEcCCCCCceeeee
Confidence 34443479999999887 47997643
No 27
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=34.06 E-value=68 Score=30.04 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=29.8
Q ss_pred CCcceeEEEEEcCCC-ceeecccccC------ceEEeC-CCCCC-cceEEEEEecCCcE
Q 025298 183 GAGSIKSAYIKGSST-NWMAMSRNWG------ANWQSN-AYLNG-QSLSFKVTTTDGET 232 (255)
Q Consensus 183 g~~~I~sVei~~~~~-~W~~m~r~~g------n~W~~~-~~~~g-~p~~vRvTs~~G~~ 232 (255)
|.+.|+.|||..+++ +|+......- -.|++. .+..+ --+-.|-||..|++
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~ 294 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGYV 294 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCCC
Confidence 445799999998874 7997654211 133332 12222 25666778887753
No 28
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=31.22 E-value=59 Score=27.30 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=22.2
Q ss_pred ceEEEEEecCCc-EEEeCcccCCCCCCCcE
Q 025298 220 SLSFKVTTTDGE-TRIFPNVVPSNWHFGQS 248 (255)
Q Consensus 220 p~~vRvTs~~G~-~i~~~~vip~~w~~G~~ 248 (255)
.++|+|||...+ .|.+..++|+-|+.|+-
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GilPDlFrEGqg 102 (155)
T PRK13159 73 KVSFTVIDKNAATQVEYTGILPDLFRDNQS 102 (155)
T ss_pred EEEEEEEcCCcEEEEEEccCCCccccCCCe
Confidence 578889986554 55567899999998863
No 29
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=29.12 E-value=1.7e+02 Score=24.23 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=27.6
Q ss_pred CCccceeEEEEecCCCCceeEEEc--C--cCceeEEEEEeecCCcceeEEEEE
Q 025298 145 GGIVPVLYQRVPCKKPGGVRFTIN--G--RDYFELVLISNVAGAGSIKSAYIK 193 (255)
Q Consensus 145 ~G~v~i~~r~V~C~~~gni~~~v~--g--~~~w~~v~v~n~~g~~~I~sVei~ 193 (255)
.|-++|+-|+-| -.++..+.+= | +|+|+.|++ +.+| .++.-|...
T Consensus 57 gGffPVq~Rfsp--~~~~~~l~vCSpG~~sP~W~~Vl~-~~gG-~~~a~v~~~ 105 (144)
T PRK13701 57 GGFFPVQVRFTP--AHERFHLALCSPGDVSPVWVLVLV-NAGG-EPFAVVQVQ 105 (144)
T ss_pred cCeeeEEEEecC--CCCCeEEEEeCCCCCCcceEEEEE-cCCC-cEEEEEEec
Confidence 356666666666 2235555554 3 899999888 5654 455555444
No 30
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=29.04 E-value=1e+02 Score=23.75 Aligned_cols=45 Identities=18% Similarity=0.077 Sum_probs=23.1
Q ss_pred cceeEEEEEcCCCceeecccccCceEEeCCCCCCcceEEEEEecCCcEEEeC
Q 025298 185 GSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFP 236 (255)
Q Consensus 185 ~~I~sVei~~~~~~W~~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~i~~~ 236 (255)
.+|..+++..+ ++.+-+=.|.+...-.| +++|+.+|++|+.....
T Consensus 53 ~~v~~~~~~~s------iS~NP~l~F~~~~~~~g-~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 53 KPVFRADWGPS------ISENPYLRFSFKGKKSG-TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp EEEEEEEE-TT------B-SS-EEEEEEEESSSE-EEEEEEEETTS-EEEEE
T ss_pred EEEEEEEeCCc------ccCCCcEEEEEecCCCc-EEEEEEEECCCCEEEEE
Confidence 45555554432 44443334444333344 78888888888876553
No 31
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=29.00 E-value=1.5e+02 Score=28.13 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=31.5
Q ss_pred eecCCcceeEEEEEcCCC-ceeeccccc--C----------ceEEeCCCC-CCc--ceEEEEEecCCcE
Q 025298 180 NVAGAGSIKSAYIKGSST-NWMAMSRNW--G----------ANWQSNAYL-NGQ--SLSFKVTTTDGET 232 (255)
Q Consensus 180 n~~g~~~I~sVei~~~~~-~W~~m~r~~--g----------n~W~~~~~~-~g~--p~~vRvTs~~G~~ 232 (255)
..+|...|++|||...++ +|+...-.. + -.|.+.-.+ .++ -+.+|-||..|++
T Consensus 271 ~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~ 339 (365)
T cd02111 271 WSGGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNV 339 (365)
T ss_pred ECCCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCc
Confidence 344445899999998874 799865422 1 244443211 221 4566778877754
No 32
>PRK10301 hypothetical protein; Provisional
Probab=28.98 E-value=67 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=22.2
Q ss_pred cccCCccceeEEEEecCC---CCceeEEEc
Q 025298 142 IYRGGIVPVLYQRVPCKK---PGGVRFTIN 168 (255)
Q Consensus 142 ~~~~G~v~i~~r~V~C~~---~gni~~~v~ 168 (255)
.+..|.+.|+||-|+=+- .|.++|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 357899999999999773 578888875
No 33
>KOG4192 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.91 E-value=92 Score=25.21 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=53.8
Q ss_pred CCCC-CCCCceeeChhHHHhcccccCCccceeEE-------EEecCCCCceeEEEc-CcCceeEEEEEeecCCcceeEEE
Q 025298 121 GWCN-PPRQHFDMAYPAWQKIGIYRGGIVPVLYQ-------RVPCKKPGGVRFTIN-GRDYFELVLISNVAGAGSIKSAY 191 (255)
Q Consensus 121 ~~C~-~~~~~~DLs~~AF~~ia~~~~G~v~i~~r-------~V~C~~~gni~~~v~-g~~~w~~v~v~n~~g~~~I~sVe 191 (255)
+.|. ...-||-+....|..|-+ -....+|+ -+.|..-|--+|... |++|=.+|.+.=..+ +.+++|+
T Consensus 35 rics~k~~~hfivpas~f~ll~g---~efitty~~gth~aqhtfck~cGV~sf~~~rs~p~~~~i~phCld~-gTlr~v~ 110 (134)
T KOG4192|consen 35 RICSKKQNRHFIVPASRFVLLVG---AEFITTYTFGTHQAQHTFCKRCGVQSFYSPRSNPYGKGIAPHCLDE-GTLRSVV 110 (134)
T ss_pred hhhhhccceEEEEeccceEEEeC---cceEEEEEeccchhheeeeccccceeccccccCCCceeecceeecC-CceeEEE
Confidence 3464 235789998888887743 22334443 467776655567666 899988888876664 8999999
Q ss_pred EEcCC-Cceeecc
Q 025298 192 IKGSS-TNWMAMS 203 (255)
Q Consensus 192 i~~~~-~~W~~m~ 203 (255)
++.-+ .+|..+.
T Consensus 111 ~~~fnGqdwe~~~ 123 (134)
T KOG4192|consen 111 WEEFNGQDWEATM 123 (134)
T ss_pred EEEecCcchhHhh
Confidence 98655 5676543
No 34
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=27.50 E-value=1e+02 Score=29.24 Aligned_cols=50 Identities=22% Similarity=0.535 Sum_probs=30.8
Q ss_pred CCcceeEEEEEcCC-Cceeecccc--cCc----eEEeC-CCC-CCc-ceEEEEEecCCcE
Q 025298 183 GAGSIKSAYIKGSS-TNWMAMSRN--WGA----NWQSN-AYL-NGQ-SLSFKVTTTDGET 232 (255)
Q Consensus 183 g~~~I~sVei~~~~-~~W~~m~r~--~gn----~W~~~-~~~-~g~-p~~vRvTs~~G~~ 232 (255)
|.+.|++|||...+ .+|++..-. .+. .|++. .+. .|. -+.+|-||..|++
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~ 345 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQT 345 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCCC
Confidence 34679999999887 479976432 222 46654 122 331 5666668888853
No 35
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=26.90 E-value=69 Score=25.72 Aligned_cols=30 Identities=23% Similarity=0.488 Sum_probs=18.0
Q ss_pred cceEEEEEecCCc-EEEeCcccCCCCCCCcE
Q 025298 219 QSLSFKVTTTDGE-TRIFPNVVPSNWHFGQS 248 (255)
Q Consensus 219 ~p~~vRvTs~~G~-~i~~~~vip~~w~~G~~ 248 (255)
..++|.|||...+ .|+...+.|++++.|+.
T Consensus 71 ~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~ 101 (131)
T PF03100_consen 71 NTLTFTITDGGKEIPVVYTGPLPDLFREGQG 101 (131)
T ss_dssp SEEEEEEE-SS-EEEEEEES--CTT--TTSE
T ss_pred CEEEEEEEECCcEEEEEECCCCCccccCCCe
Confidence 3689999987544 55567899999988864
No 36
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=25.14 E-value=99 Score=25.65 Aligned_cols=29 Identities=21% Similarity=0.491 Sum_probs=21.6
Q ss_pred ceEEEEEecCCc-EEEeCcccCCCCCCCcE
Q 025298 220 SLSFKVTTTDGE-TRIFPNVVPSNWHFGQS 248 (255)
Q Consensus 220 p~~vRvTs~~G~-~i~~~~vip~~w~~G~~ 248 (255)
.++|+|||...+ .|+...++|+.++-|+.
T Consensus 72 ~~~F~ltD~~~~i~V~Y~G~lPd~F~eg~~ 101 (148)
T PRK13254 72 TVRFVVTDGNATVPVVYTGILPDLFREGQG 101 (148)
T ss_pred EEEEEEEeCCeEEEEEECCCCCccccCCCE
Confidence 688999987443 44556899999988764
No 37
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=24.60 E-value=85 Score=26.48 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=22.3
Q ss_pred ceEEEEEecCCc-EEEeCcccCCCCCCCcE
Q 025298 220 SLSFKVTTTDGE-TRIFPNVVPSNWHFGQS 248 (255)
Q Consensus 220 p~~vRvTs~~G~-~i~~~~vip~~w~~G~~ 248 (255)
.++|+|||...+ .|+...++|+.|+.|+-
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG~g 108 (159)
T PRK13150 79 KVNFSLYDAEGSVTVSYEGILPDLFREGQG 108 (159)
T ss_pred EEEEEEEcCCcEEEEEEeccCCccccCCCe
Confidence 578888887665 55567899999988864
No 38
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=22.87 E-value=93 Score=25.29 Aligned_cols=27 Identities=19% Similarity=0.457 Sum_probs=23.4
Q ss_pred cccCCccceeEEEEecCC---CCceeEEEc
Q 025298 142 IYRGGIVPVLYQRVPCKK---PGGVRFTIN 168 (255)
Q Consensus 142 ~~~~G~v~i~~r~V~C~~---~gni~~~v~ 168 (255)
++..|.+-++||.|+=+- .|.+.|.|+
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~ 125 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKGSISFSVG 125 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEeccEEEEEec
Confidence 568999999999999983 678999886
No 39
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=22.10 E-value=1e+02 Score=26.00 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=21.5
Q ss_pred ceEEEEEecCCc-EEEeCcccCCCCCCCcE
Q 025298 220 SLSFKVTTTDGE-TRIFPNVVPSNWHFGQS 248 (255)
Q Consensus 220 p~~vRvTs~~G~-~i~~~~vip~~w~~G~~ 248 (255)
.++|+|||...+ .|+...++|+.|+.|+-
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG~g 108 (160)
T PRK13165 79 KVSFTLYDAGGSVTVTYEGILPDLFREGQG 108 (160)
T ss_pred EEEEEEEcCCeEEEEEEcccCCccccCCCe
Confidence 478888886554 55566899999988764
No 40
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=21.08 E-value=2.4e+02 Score=19.89 Aligned_cols=48 Identities=23% Similarity=0.390 Sum_probs=29.5
Q ss_pred eeEEEEEcCCCc-e----eecc-cccCceEEeC--CCCC-C-cceEEEEEecCCcEEE
Q 025298 187 IKSAYIKGSSTN-W----MAMS-RNWGANWQSN--AYLN-G-QSLSFKVTTTDGETRI 234 (255)
Q Consensus 187 I~sVei~~~~~~-W----~~m~-r~~gn~W~~~--~~~~-g-~p~~vRvTs~~G~~i~ 234 (255)
-++|+|...... | .+|. +....+|++. ..+. | .-+.+||+..+|++..
T Consensus 22 A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g~~~~ 79 (85)
T PF02922_consen 22 AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDGETPE 79 (85)
T ss_dssp ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTTEEEE
T ss_pred CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCCcEEE
Confidence 455666543322 3 4677 5777899864 2344 3 3899999998875443
Done!