Query 025299
Match_columns 255
No_of_seqs 229 out of 1389
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 6.2E-32 2.1E-36 211.7 11.2 100 11-110 1-104 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 4.8E-32 1.6E-36 213.7 9.7 102 14-115 1-106 (107)
3 3zqc_A MYB3; transcription-DNA 100.0 6.9E-31 2.4E-35 213.9 11.7 99 14-112 2-104 (131)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 4.8E-31 1.7E-35 213.7 10.2 108 3-110 16-127 (128)
5 3osg_A MYB21; transcription-DN 100.0 8.4E-31 2.9E-35 212.3 11.3 102 9-110 6-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 4.7E-29 1.6E-33 208.7 10.4 104 7-110 51-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 1.5E-27 5E-32 199.6 6.9 99 10-108 2-105 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.8 6.8E-22 2.3E-26 159.9 6.2 71 38-108 2-74 (128)
9 2llk_A Cyclin-D-binding MYB-li 99.8 1.1E-20 3.7E-25 140.3 5.2 58 50-108 11-68 (73)
10 2din_A Cell division cycle 5-l 99.8 8E-19 2.7E-23 126.9 6.0 60 54-114 1-60 (66)
11 2dim_A Cell division cycle 5-l 99.7 5.8E-19 2E-23 129.1 3.5 65 6-70 1-69 (70)
12 2cu7_A KIAA1915 protein; nucle 99.7 2.9E-18 1E-22 126.1 6.7 58 56-113 3-60 (72)
13 2d9a_A B-MYB, MYB-related prot 99.7 2.3E-17 7.9E-22 117.0 6.1 54 57-110 3-57 (60)
14 1ign_A Protein (RAP1); RAP1,ye 99.7 7E-17 2.4E-21 143.3 8.8 101 10-110 4-200 (246)
15 1guu_A C-MYB, MYB proto-oncoge 99.7 5.5E-17 1.9E-21 111.8 6.1 50 60-109 1-51 (52)
16 1gvd_A MYB proto-oncogene prot 99.7 1.1E-16 3.7E-21 110.4 6.0 50 60-109 1-51 (52)
17 1w0t_A Telomeric repeat bindin 99.6 2.3E-16 7.9E-21 109.3 6.3 50 61-110 1-53 (53)
18 1x41_A Transcriptional adaptor 99.6 2.4E-16 8.4E-21 112.0 6.2 53 57-109 3-56 (60)
19 2dim_A Cell division cycle 5-l 99.6 2E-16 6.7E-21 115.5 4.7 56 57-112 4-60 (70)
20 1ity_A TRF1; helix-turn-helix, 99.6 5.4E-16 1.9E-20 113.0 7.0 58 54-111 2-62 (69)
21 2yum_A ZZZ3 protein, zinc fing 99.6 3.4E-16 1.2E-20 115.6 5.1 56 57-112 3-64 (75)
22 2ltp_A Nuclear receptor corepr 99.4 5.1E-17 1.7E-21 124.4 0.0 57 54-110 8-64 (89)
23 2elk_A SPCC24B10.08C protein; 99.6 2.5E-15 8.4E-20 106.3 6.2 52 56-107 3-56 (58)
24 3sjm_A Telomeric repeat-bindin 99.6 5.2E-15 1.8E-19 106.8 6.5 51 60-110 9-62 (64)
25 2cqr_A RSGI RUH-043, DNAJ homo 99.5 2.6E-14 8.8E-19 105.9 5.9 52 58-109 14-69 (73)
26 2juh_A Telomere binding protei 99.5 1.3E-14 4.5E-19 117.0 4.5 79 8-86 11-103 (121)
27 2d9a_A B-MYB, MYB-related prot 99.5 3.8E-14 1.3E-18 100.3 4.9 54 8-61 2-59 (60)
28 2roh_A RTBP1, telomere binding 99.4 1.3E-13 4.3E-18 111.5 7.2 75 9-83 26-114 (122)
29 2yus_A SWI/SNF-related matrix- 99.4 9.9E-14 3.4E-18 104.1 4.6 48 59-106 15-62 (79)
30 1x58_A Hypothetical protein 49 99.4 2.5E-13 8.4E-18 97.4 6.2 50 60-109 6-58 (62)
31 1gvd_A MYB proto-oncogene prot 99.4 1.5E-13 5.2E-18 94.5 4.5 48 12-59 1-52 (52)
32 1gv2_A C-MYB, MYB proto-oncoge 99.4 4.3E-13 1.5E-17 104.3 6.1 50 59-108 1-51 (105)
33 2ckx_A NGTRF1, telomere bindin 99.4 6.5E-13 2.2E-17 100.6 6.8 49 63-111 1-54 (83)
34 1ign_A Protein (RAP1); RAP1,ye 99.4 2.5E-13 8.4E-18 120.6 5.2 55 58-112 4-64 (246)
35 3osg_A MYB21; transcription-DN 99.4 6.2E-13 2.1E-17 107.1 6.2 52 57-108 6-57 (126)
36 1guu_A C-MYB, MYB proto-oncoge 99.4 3.6E-13 1.2E-17 92.6 4.1 48 12-59 1-52 (52)
37 2juh_A Telomere binding protei 99.3 9.3E-13 3.2E-17 106.2 6.5 55 56-110 11-70 (121)
38 2din_A Cell division cycle 5-l 99.3 1.9E-13 6.5E-18 98.5 1.3 59 6-64 1-61 (66)
39 2cjj_A Radialis; plant develop 99.3 2.2E-12 7.6E-17 99.6 7.3 51 61-111 7-61 (93)
40 2aje_A Telomere repeat-binding 99.3 2.1E-12 7.2E-17 101.8 6.9 54 57-110 8-66 (105)
41 1ity_A TRF1; helix-turn-helix, 99.3 1.8E-12 6.2E-17 94.2 4.9 59 8-66 4-68 (69)
42 2k9n_A MYB24; R2R3 domain, DNA 99.3 3.9E-12 1.3E-16 99.6 5.7 47 62-108 1-48 (107)
43 1x41_A Transcriptional adaptor 99.2 3.8E-12 1.3E-16 90.2 4.3 53 8-60 2-58 (60)
44 3zqc_A MYB3; transcription-DNA 99.2 6.9E-12 2.4E-16 101.5 6.2 47 62-108 2-49 (131)
45 3sjm_A Telomeric repeat-bindin 99.2 3E-12 1E-16 92.3 3.5 52 10-61 7-64 (64)
46 2roh_A RTBP1, telomere binding 99.2 1E-11 3.6E-16 100.2 6.7 54 57-110 26-84 (122)
47 3hm5_A DNA methyltransferase 1 99.2 1.7E-11 5.9E-16 94.6 7.4 64 47-114 19-87 (93)
48 2yum_A ZZZ3 protein, zinc fing 99.2 6.2E-12 2.1E-16 92.6 2.7 57 8-64 2-67 (75)
49 2cu7_A KIAA1915 protein; nucle 99.1 2.2E-11 7.6E-16 89.2 2.4 57 6-62 1-60 (72)
50 2elk_A SPCC24B10.08C protein; 99.1 6.3E-11 2.1E-15 83.5 4.0 51 6-56 1-56 (58)
51 2eqr_A N-COR1, N-COR, nuclear 99.1 2.1E-10 7.3E-15 81.6 6.1 48 61-108 11-58 (61)
52 1w0t_A Telomeric repeat bindin 99.0 1E-10 3.5E-15 80.7 3.7 45 13-57 1-51 (53)
53 2ckx_A NGTRF1, telomere bindin 99.0 6.2E-10 2.1E-14 84.2 5.9 66 15-80 1-80 (83)
54 2cqq_A RSGI RUH-037, DNAJ homo 99.0 7.4E-10 2.5E-14 81.6 5.8 51 58-109 4-58 (72)
55 2aje_A Telomere repeat-binding 98.9 8.5E-10 2.9E-14 86.9 5.8 75 8-82 7-95 (105)
56 2llk_A Cyclin-D-binding MYB-li 98.9 5.8E-10 2E-14 82.4 4.0 57 5-62 14-72 (73)
57 2iw5_B Protein corest, REST co 98.8 4.4E-09 1.5E-13 92.7 5.4 48 62-109 133-180 (235)
58 2cqr_A RSGI RUH-043, DNAJ homo 98.7 8.3E-09 2.8E-13 76.2 4.0 50 8-57 12-68 (73)
59 2ltp_A Nuclear receptor corepr 98.2 1.7E-09 5.7E-14 82.5 0.0 52 7-58 9-63 (89)
60 2yus_A SWI/SNF-related matrix- 98.6 1.6E-08 5.4E-13 75.6 2.8 45 11-55 15-62 (79)
61 1wgx_A KIAA1903 protein; MYB D 98.6 4E-08 1.4E-12 72.5 4.8 49 62-110 8-60 (73)
62 1ug2_A 2610100B20RIK gene prod 98.5 1.1E-07 3.9E-12 72.6 5.3 48 64-111 35-85 (95)
63 1fex_A TRF2-interacting telome 98.4 2.1E-07 7.2E-12 65.9 5.0 47 62-108 2-58 (59)
64 2lr8_A CAsp8-associated protei 97.8 2.8E-08 9.7E-13 72.1 0.0 45 64-109 16-63 (70)
65 4iej_A DNA methyltransferase 1 98.2 3.2E-06 1.1E-10 65.0 7.8 62 50-115 22-88 (93)
66 2cjj_A Radialis; plant develop 98.2 6.9E-07 2.4E-11 68.7 3.4 44 13-56 7-57 (93)
67 2yqk_A Arginine-glutamic acid 98.2 4.1E-06 1.4E-10 59.7 6.6 49 57-105 4-53 (63)
68 4eef_G F-HB80.4, designed hema 98.0 1.1E-06 3.7E-11 64.8 1.2 43 62-104 20-66 (74)
69 2xag_B REST corepressor 1; ami 97.7 3.1E-05 1.1E-09 74.9 5.4 47 62-108 380-426 (482)
70 4a69_C Nuclear receptor corepr 97.7 6.2E-05 2.1E-09 57.7 5.9 43 63-105 44-86 (94)
71 2eqr_A N-COR1, N-COR, nuclear 97.6 5.5E-05 1.9E-09 53.3 4.7 47 10-56 8-57 (61)
72 2crg_A Metastasis associated p 97.6 0.00012 4E-09 53.2 5.9 43 62-104 8-51 (70)
73 2cqq_A RSGI RUH-037, DNAJ homo 97.5 5.4E-05 1.8E-09 55.4 3.7 48 10-57 4-57 (72)
74 1x58_A Hypothetical protein 49 97.5 0.00014 4.6E-09 52.0 4.7 49 9-57 3-57 (62)
75 1fex_A TRF2-interacting telome 97.2 0.0003 1E-08 49.5 3.6 44 14-57 2-58 (59)
76 2ebi_A DNA binding protein GT- 96.9 0.00061 2.1E-08 50.7 3.7 51 62-112 4-68 (86)
77 1wgx_A KIAA1903 protein; MYB D 96.8 0.0007 2.4E-08 49.7 3.3 44 14-57 8-58 (73)
78 2iw5_B Protein corest, REST co 96.7 0.001 3.6E-08 58.6 4.0 46 12-57 131-179 (235)
79 2yqk_A Arginine-glutamic acid 94.6 0.046 1.6E-06 38.4 4.6 49 6-54 1-53 (63)
80 2ebi_A DNA binding protein GT- 94.4 0.016 5.5E-07 42.8 1.9 44 13-56 3-63 (86)
81 1ofc_X ISWI protein; nuclear p 94.1 0.055 1.9E-06 49.5 5.2 51 59-109 209-275 (304)
82 1irz_A ARR10-B; helix-turn-hel 94.0 0.18 6.2E-06 35.9 6.7 47 60-106 5-56 (64)
83 4eef_G F-HB80.4, designed hema 93.9 0.026 9E-07 41.4 2.1 49 5-53 10-66 (74)
84 2lr8_A CAsp8-associated protei 92.4 0.015 5.3E-07 42.0 0.0 43 14-56 14-61 (70)
85 1ofc_X ISWI protein; nuclear p 92.3 0.24 8.2E-06 45.2 6.5 46 62-107 110-156 (304)
86 2xag_B REST corepressor 1; ami 92.0 0.028 9.6E-07 54.4 0.0 42 63-104 190-231 (482)
87 1ug2_A 2610100B20RIK gene prod 91.4 0.17 5.7E-06 38.6 3.7 49 6-54 25-79 (95)
88 4b4c_A Chromodomain-helicase-D 91.4 0.47 1.6E-05 40.0 7.0 46 63-108 135-195 (211)
89 4b4c_A Chromodomain-helicase-D 91.3 0.3 1E-05 41.3 5.7 49 61-109 6-59 (211)
90 2y9y_A Imitation switch protei 90.3 0.31 1.1E-05 45.7 5.2 50 61-110 227-292 (374)
91 3hm5_A DNA methyltransferase 1 84.4 0.78 2.7E-05 34.9 3.4 45 12-56 28-80 (93)
92 4a69_C Nuclear receptor corepr 83.4 0.85 2.9E-05 34.4 3.3 41 14-54 43-86 (94)
93 2xb0_X Chromo domain-containin 81.9 0.99 3.4E-05 40.5 3.6 27 63-89 169-196 (270)
94 2crg_A Metastasis associated p 77.2 3.4 0.00011 29.3 4.5 42 13-54 7-52 (70)
95 2xb0_X Chromo domain-containin 74.4 7.8 0.00027 34.6 7.2 48 62-109 3-55 (270)
96 2cxy_A BAF250B subunit, HBAF25 71.6 12 0.00041 29.2 6.9 43 72-114 55-109 (125)
97 2o8x_A Probable RNA polymerase 70.8 6.3 0.00022 26.2 4.5 41 68-109 18-58 (70)
98 2li6_A SWI/SNF chromatin-remod 66.7 4.5 0.00015 31.3 3.4 39 72-110 53-99 (116)
99 1ku3_A Sigma factor SIGA; heli 65.1 7.3 0.00025 26.7 4.0 43 68-111 13-59 (73)
100 2lm1_A Lysine-specific demethy 64.9 9.7 0.00033 28.7 4.9 40 72-111 48-99 (107)
101 2jrz_A Histone demethylase jar 63.5 8.9 0.0003 29.6 4.5 42 72-113 44-97 (117)
102 3hug_A RNA polymerase sigma fa 62.8 13 0.00045 26.6 5.1 42 68-110 40-81 (92)
103 2p7v_B Sigma-70, RNA polymeras 62.7 6.4 0.00022 26.6 3.3 42 68-110 8-53 (68)
104 2eqy_A RBP2 like, jumonji, at 60.1 45 0.0016 25.7 8.2 43 72-114 46-100 (122)
105 1kkx_A Transcription regulator 55.6 5.9 0.0002 31.1 2.2 41 72-112 52-100 (123)
106 2y9y_A Imitation switch protei 54.8 21 0.00073 33.3 6.2 42 62-103 123-166 (374)
107 2jxj_A Histone demethylase jar 53.2 6.9 0.00024 28.9 2.2 38 72-109 40-89 (96)
108 1x3u_A Transcriptional regulat 52.2 27 0.00094 23.6 5.2 42 65-109 17-58 (79)
109 1c20_A DEAD ringer protein; DN 52.1 25 0.00086 27.4 5.4 44 71-114 55-111 (128)
110 2rq5_A Protein jumonji; develo 52.1 15 0.00053 28.7 4.2 38 72-109 46-96 (121)
111 2q1z_A RPOE, ECF SIGE; ECF sig 51.5 16 0.00054 28.7 4.2 40 70-110 140-179 (184)
112 1or7_A Sigma-24, RNA polymeras 51.1 24 0.00082 27.7 5.3 37 73-110 148-184 (194)
113 3c57_A Two component transcrip 50.4 24 0.00083 25.5 4.8 44 64-110 27-70 (95)
114 3ulq_B Transcriptional regulat 50.1 30 0.001 25.0 5.3 47 61-110 26-72 (90)
115 2kk0_A AT-rich interactive dom 49.8 20 0.00069 28.7 4.6 43 71-113 67-122 (145)
116 1ig6_A MRF-2, modulator recogn 47.9 11 0.00038 28.4 2.7 40 71-110 36-88 (107)
117 1je8_A Nitrate/nitrite respons 47.4 26 0.00088 24.6 4.5 43 64-109 21-63 (82)
118 2yqf_A Ankyrin-1; death domain 46.2 46 0.0016 25.0 6.0 39 62-101 10-48 (111)
119 1tty_A Sigma-A, RNA polymerase 46.1 22 0.00076 25.2 4.0 41 68-109 21-65 (87)
120 2jpc_A SSRB; DNA binding prote 46.1 35 0.0012 21.9 4.7 39 70-110 3-41 (61)
121 4iej_A DNA methyltransferase 1 43.4 35 0.0012 25.7 4.7 44 12-55 28-79 (93)
122 1fse_A GERE; helix-turn-helix 41.9 38 0.0013 22.4 4.5 44 63-109 10-53 (74)
123 2rnj_A Response regulator prot 41.0 31 0.0011 24.5 4.1 43 64-109 29-71 (91)
124 1xsv_A Hypothetical UPF0122 pr 40.9 47 0.0016 25.0 5.3 41 68-109 28-68 (113)
125 1rp3_A RNA polymerase sigma fa 39.4 43 0.0015 27.0 5.2 41 69-110 191-231 (239)
126 2lfw_A PHYR sigma-like domain; 38.8 24 0.00081 27.5 3.4 42 68-110 96-137 (157)
127 3mzy_A RNA polymerase sigma-H 38.4 39 0.0013 25.4 4.5 31 78-109 121-151 (164)
128 2of5_H Leucine-rich repeat and 35.7 33 0.0011 26.2 3.7 31 70-101 13-43 (118)
129 2o71_A Death domain-containing 34.0 42 0.0014 25.8 4.0 42 56-101 13-54 (115)
130 2of5_A Death domain-containing 33.2 39 0.0013 25.9 3.7 43 55-101 12-54 (114)
131 1p4w_A RCSB; solution structur 32.5 1.3E+02 0.0044 22.0 6.5 46 62-110 32-77 (99)
132 3i4p_A Transcriptional regulat 31.3 43 0.0015 26.4 3.8 42 68-110 3-45 (162)
133 1wxp_A THO complex subunit 1; 31.2 55 0.0019 24.6 4.2 31 70-101 18-48 (110)
134 1s7o_A Hypothetical UPF0122 pr 29.9 77 0.0026 23.8 4.9 43 65-109 23-65 (113)
135 2dbb_A Putative HTH-type trans 26.0 1.2E+02 0.004 23.2 5.5 42 68-110 9-51 (151)
136 2p1m_A SKP1-like protein 1A; F 25.7 61 0.0021 25.9 3.8 32 37-75 121-153 (160)
137 3cz6_A DNA-binding protein RAP 24.7 61 0.0021 26.9 3.6 29 46-74 97-126 (168)
138 1ntc_A Protein (nitrogen regul 23.3 1.4E+02 0.0048 21.3 5.1 33 68-101 51-83 (91)
139 3clo_A Transcriptional regulat 22.5 83 0.0028 26.5 4.2 43 64-109 197-239 (258)
140 2cuf_A FLJ21616 protein; homeo 21.9 2.2E+02 0.0076 20.3 7.3 47 61-107 10-74 (95)
141 3e7l_A Transcriptional regulat 20.8 1.3E+02 0.0045 19.8 4.2 29 68-97 19-47 (63)
142 2dn0_A Zinc fingers and homeob 20.8 1.4E+02 0.0046 20.6 4.4 50 55-105 5-58 (76)
143 2e1c_A Putative HTH-type trans 20.2 1.2E+02 0.0041 24.2 4.6 42 68-110 27-69 (171)
144 3t72_q RNA polymerase sigma fa 20.2 1.7E+02 0.0057 21.5 5.0 41 69-110 23-67 (99)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=6.2e-32 Score=211.68 Aligned_cols=100 Identities=40% Similarity=0.712 Sum_probs=90.2
Q ss_pred CcccCCCcHHHHH-HHHHHHhhcC--CeeecccC-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhCCChhh
Q 025299 11 ELCAAVWRSALGF-YCESFRFEGG--GRQYNRGL-NRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSR 86 (255)
Q Consensus 11 ~l~kg~WT~eED~-llk~v~~~g~--w~~i~~~l-~Rt~~QCr~RW~n~L~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~ 86 (255)
++++|+||++||. |+++|..+|. |..|+..+ +||++||++||.++|+|.+++++||+|||++|+++|.+||++|+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 4789999999996 5555666664 66787777 999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 87 IARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 87 Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
||++|||||+++|||||+.+++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHcCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999876
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=4.8e-32 Score=213.71 Aligned_cols=102 Identities=26% Similarity=0.543 Sum_probs=91.2
Q ss_pred cCCCcHHHHH-HHHHHHhhcC--CeeecccC-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhh
Q 025299 14 AAVWRSALGF-YCESFRFEGG--GRQYNRGL-NRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIAR 89 (255)
Q Consensus 14 kg~WT~eED~-llk~v~~~g~--w~~i~~~l-~Rt~~QCr~RW~n~L~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~ 89 (255)
||.||++||. |+++|..+|. |..|+..+ +||++||++||.++|+|++++++||+|||++|+++|.+||++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 6899999996 5555666663 66777777 999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHhhHHHHhhh
Q 025299 90 KLPGRTDNEIKNYWRTHMRKKAQERK 115 (255)
Q Consensus 90 ~lpgRT~nq~KnRw~~llrk~~~~~~ 115 (255)
+|||||+++|||||+.++++..+..+
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~~~~ 106 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAKHQK 106 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHSSTT
T ss_pred HCCCCCHHHHHHHHHHHHhhHHHhhc
Confidence 99999999999999999998765443
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=6.9e-31 Score=213.94 Aligned_cols=99 Identities=34% Similarity=0.579 Sum_probs=90.6
Q ss_pred cCCCcHHHHH-HHHHHHhhc--CCeeecccC-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhh
Q 025299 14 AAVWRSALGF-YCESFRFEG--GGRQYNRGL-NRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIAR 89 (255)
Q Consensus 14 kg~WT~eED~-llk~v~~~g--~w~~i~~~l-~Rt~~QCr~RW~n~L~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~ 89 (255)
||.||++||. |+++|..+| +|..|+..+ +||++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 7999999996 555566666 477888877 999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHhhHHHH
Q 025299 90 KLPGRTDNEIKNYWRTHMRKKAQ 112 (255)
Q Consensus 90 ~lpgRT~nq~KnRw~~llrk~~~ 112 (255)
+|||||+++|||||+.+++++..
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGGGCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988754
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=4.8e-31 Score=213.72 Aligned_cols=108 Identities=38% Similarity=0.656 Sum_probs=93.4
Q ss_pred CCCCCCCCCcccCCCcHHHHH-HHHHHHhhcC--CeeecccC-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q 025299 3 RAGGHTAGELCAAVWRSALGF-YCESFRFEGG--GRQYNRGL-NRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHA 78 (255)
Q Consensus 3 ~~~g~~a~~l~kg~WT~eED~-llk~v~~~g~--w~~i~~~l-~Rt~~QCr~RW~n~L~P~l~~~~WT~eED~~Ll~lv~ 78 (255)
|-.-...|.+++|+||++||. |+++|..+|. |..|+..+ |||++||++||.++|+|.+++++||+|||++|+++|.
T Consensus 16 Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~ 95 (128)
T 1h8a_C 16 RWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK 95 (128)
T ss_dssp ------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHH
Confidence 334557889999999999995 5556666663 77777777 9999999999999999999999999999999999999
Q ss_pred HhCCChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 79 KWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 79 ~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
+||++|+.||++|||||+++|||||+.+++++
T Consensus 96 ~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 96 RLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999875
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=8.4e-31 Score=212.28 Aligned_cols=102 Identities=28% Similarity=0.486 Sum_probs=91.2
Q ss_pred CCCcccCCCcHHHHH-HHHHHHhhc-CCeeecccC-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhCCChh
Q 025299 9 AGELCAAVWRSALGF-YCESFRFEG-GGRQYNRGL-NRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWS 85 (255)
Q Consensus 9 a~~l~kg~WT~eED~-llk~v~~~g-~w~~i~~~l-~Rt~~QCr~RW~n~L~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws 85 (255)
....++|.||++||. |+++|..+| +|..|+..+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 357889999999996 555555556 466677777 99999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 86 RIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 86 ~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
.||++|||||+++|||||+.++++.
T Consensus 86 ~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 86 IIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988874
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=4.7e-29 Score=208.70 Aligned_cols=104 Identities=38% Similarity=0.668 Sum_probs=94.4
Q ss_pred CCCCCcccCCCcHHHHH-HHHHHHhhcC--CeeecccC-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 025299 7 HTAGELCAAVWRSALGF-YCESFRFEGG--GRQYNRGL-NRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGN 82 (255)
Q Consensus 7 ~~a~~l~kg~WT~eED~-llk~v~~~g~--w~~i~~~l-~Rt~~QCr~RW~n~L~P~l~~~~WT~eED~~Ll~lv~~~G~ 82 (255)
+..|.+++|+||++||. |++.+..+|. |..|+..+ +||+.||++||.++|+|.+++++||++||++|+++|.+||+
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 46788999999999995 5566666763 77777777 99999999999999999999999999999999999999999
Q ss_pred ChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 83 RWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 83 ~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
+|+.||++|||||+++|||||+.+++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.94 E-value=1.5e-27 Score=199.61 Aligned_cols=99 Identities=31% Similarity=0.580 Sum_probs=60.0
Q ss_pred CCcccCCCcHHHHHH-HHHHHhhc--CCeeecccC-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhCC-Ch
Q 025299 10 GELCAAVWRSALGFY-CESFRFEG--GGRQYNRGL-NRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGN-RW 84 (255)
Q Consensus 10 ~~l~kg~WT~eED~l-lk~v~~~g--~w~~i~~~l-~Rt~~QCr~RW~n~L~P~l~~~~WT~eED~~Ll~lv~~~G~-~W 84 (255)
|+++++.||++||.+ +++|..+| .|..|+..+ +|+++||++||.++|+|++++++||+|||++|+++|.+||. +|
T Consensus 2 g~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 2 GHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 568899999999964 45555555 477888887 99999999999999999999999999999999999999996 69
Q ss_pred hhhhhhCCCCCHHHHHHHHHHHhh
Q 025299 85 SRIARKLPGRTDNEIKNYWRTHMR 108 (255)
Q Consensus 85 s~Ia~~lpgRT~nq~KnRw~~llr 108 (255)
..||.+|||||++||++||+.+++
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhC
Confidence 999999999999999999998774
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.85 E-value=6.8e-22 Score=159.88 Aligned_cols=71 Identities=37% Similarity=0.762 Sum_probs=50.0
Q ss_pred cccC-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhhCCCCCHHHHHHHHHHHhh
Q 025299 38 NRGL-NRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMR 108 (255)
Q Consensus 38 ~~~l-~Rt~~QCr~RW~n~L~P~l~~~~WT~eED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~nq~KnRw~~llr 108 (255)
+..+ |||++||++||.++|+|++++++||+|||++|+++|.+||. +|..||.+|||||+.||++||+.+|.
T Consensus 2 a~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 2 EAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp --------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred ccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 4444 99999999999999999999999999999999999999996 69999999999999999999998775
No 9
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-20 Score=140.30 Aligned_cols=58 Identities=29% Similarity=0.424 Sum_probs=48.0
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhh
Q 025299 50 LRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMR 108 (255)
Q Consensus 50 ~RW~n~L~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llr 108 (255)
-||.|+|+|++++++||+|||++|+++|++||++|++||+.| |||+++|||||+.+.+
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999 9999999999997644
No 10
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8e-19 Score=126.92 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=56.6
Q ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhHHHHhh
Q 025299 54 NYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQER 114 (255)
Q Consensus 54 n~L~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~~~~~ 114 (255)
.||+|.+++++||.|||++|+++|.+||++|.+||. |+|||++|||+||+.++++..+..
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 379999999999999999999999999999999999 899999999999999999887654
No 11
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.8e-19 Score=129.05 Aligned_cols=65 Identities=20% Similarity=0.394 Sum_probs=55.7
Q ss_pred CCCCCCcccCCCcHHHHH-HHHHHHhhc--CCeeecccC-CCCHHHHHHHHHHhcCCCCCCCCCCHHHH
Q 025299 6 GHTAGELCAAVWRSALGF-YCESFRFEG--GGRQYNRGL-NRTGKSCRLRWVNYLHPGLKRGKMTPQEE 70 (255)
Q Consensus 6 g~~a~~l~kg~WT~eED~-llk~v~~~g--~w~~i~~~l-~Rt~~QCr~RW~n~L~P~l~~~~WT~eED 70 (255)
|-..+.+++|.||++||. |+++|..+| +|..|+..+ +||++||++||.+||+|.|++++||+|||
T Consensus 1 gss~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 1 GSSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CCSCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 446788999999999996 555566666 477777777 89999999999999999999999999997
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.73 E-value=2.9e-18 Score=126.12 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=54.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhHHHHh
Q 025299 56 LHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQE 113 (255)
Q Consensus 56 L~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~~~~ 113 (255)
++|.+++++||.|||++|+++|.+||++|..||.+|||||++||||||+.++++..+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999887544
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.3e-17 Score=116.99 Aligned_cols=54 Identities=22% Similarity=0.416 Sum_probs=51.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 57 HPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 57 ~P~l~~~~WT~eED~~Ll~lv~~~G-~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
+|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.|||+||+++|++.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 5889999999999999999999999 59999999999999999999999998764
No 14
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.68 E-value=7e-17 Score=143.25 Aligned_cols=101 Identities=19% Similarity=0.224 Sum_probs=84.8
Q ss_pred CCcccCCCcHHHHH-HHHHHHhhcC-------CeeecccC-CCCHHHHHHHHHHhcCCCCC-------------------
Q 025299 10 GELCAAVWRSALGF-YCESFRFEGG-------GRQYNRGL-NRTGKSCRLRWVNYLHPGLK------------------- 61 (255)
Q Consensus 10 ~~l~kg~WT~eED~-llk~v~~~g~-------w~~i~~~l-~Rt~~QCr~RW~n~L~P~l~------------------- 61 (255)
+.++++.||++||+ +|.++...|+ |..|+..| |||+.|||.||.++|.+.|.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 56789999999996 5555666655 66678777 99999999999999999997
Q ss_pred ----------CCCCCHHHHHHHHHHHHH-h--------------------------------------------------
Q 025299 62 ----------RGKMTPQEERLVLELHAK-W-------------------------------------------------- 80 (255)
Q Consensus 62 ----------~~~WT~eED~~Ll~lv~~-~-------------------------------------------------- 80 (255)
+..||.+||-.|+..+.+ |
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 899999999999999987 2
Q ss_pred ---CC----ChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 81 ---GN----RWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 81 ---G~----~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
|. .|..||+.+|+||.+.+|+||+.++++.
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 21 6999999999999999999999999876
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=5.5e-17 Score=111.81 Aligned_cols=50 Identities=28% Similarity=0.522 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 60 LKRGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 60 l~~~~WT~eED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
|++++||+|||++|+++|.+||. +|..||.+|+|||++||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999998 999999999999999999999999864
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=1.1e-16 Score=110.41 Aligned_cols=50 Identities=34% Similarity=0.729 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 60 LKRGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 60 l~~~~WT~eED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
|++++||+|||++|+++|.+||. +|..||.+|+|||++|||+||+++|+.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999998864
No 17
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.64 E-value=2.3e-16 Score=109.34 Aligned_cols=50 Identities=30% Similarity=0.446 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CChhhhhhhCC--CCCHHHHHHHHHHHhhHH
Q 025299 61 KRGKMTPQEERLVLELHAKWG-NRWSRIARKLP--GRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 61 ~~~~WT~eED~~Ll~lv~~~G-~~Ws~Ia~~lp--gRT~nq~KnRw~~llrk~ 110 (255)
++++||+|||++|+++|.+|| ++|+.||.+|+ |||+.||++||+++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 478999999999999999999 69999999999 999999999999998753
No 18
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=2.4e-16 Score=112.03 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=49.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 57 HPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 57 ~P~l~~~~WT~eED~~Ll~lv~~~G-~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
.|.+.+++||+|||++|+++|.+|| ++|.+||.+|+|||+.|||+||+.++..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4789999999999999999999999 7999999999999999999999988753
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2e-16 Score=115.55 Aligned_cols=56 Identities=25% Similarity=0.431 Sum_probs=52.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhhCCCCCHHHHHHHHHHHhhHHHH
Q 025299 57 HPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHMRKKAQ 112 (255)
Q Consensus 57 ~P~l~~~~WT~eED~~Ll~lv~~~G-~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~~~ 112 (255)
.|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.|||+||+++|++..+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~ 60 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIK 60 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCccc
Confidence 5789999999999999999999999 7999999999999999999999999986543
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.62 E-value=5.4e-16 Score=112.97 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=53.2
Q ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhhCC--CCCHHHHHHHHHHHhhHHH
Q 025299 54 NYLHPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLP--GRTDNEIKNYWRTHMRKKA 111 (255)
Q Consensus 54 n~L~P~l~~~~WT~eED~~Ll~lv~~~G-~~Ws~Ia~~lp--gRT~nq~KnRw~~llrk~~ 111 (255)
+..+|..++++||+|||++|+++|.+|| ++|+.||.+|+ |||++|||+||+++|++..
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCC
Confidence 3567888999999999999999999999 69999999999 9999999999999998754
No 21
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.4e-16 Score=115.64 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=52.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CChhhhhhhCCCCCHHHHHHHHHHHhhHHHH
Q 025299 57 HPGLKRGKMTPQEERLVLELHAKWG------NRWSRIARKLPGRTDNEIKNYWRTHMRKKAQ 112 (255)
Q Consensus 57 ~P~l~~~~WT~eED~~Ll~lv~~~G------~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~~~ 112 (255)
+|++.+++||.|||++|+++|.+|| ++|.+||.+|+|||++||++||+.+|++..+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999 7899999999999999999999999887543
No 22
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.40 E-value=5.1e-17 Score=124.42 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=54.0
Q ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 54 NYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 54 n~L~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
..++|++++++||.|||++|+++|.+||++|+.||.+|+|||++||||||+.++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 357899999999999999999999999999999999999999999999999998875
No 23
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.57 E-value=2.5e-15 Score=106.27 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=47.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhhCC-CCCHHHHHHHHHHHh
Q 025299 56 LHPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLP-GRTDNEIKNYWRTHM 107 (255)
Q Consensus 56 L~P~l~~~~WT~eED~~Ll~lv~~~G-~~Ws~Ia~~lp-gRT~nq~KnRw~~ll 107 (255)
++..+.+++||++||++|+++|.+|| ++|.+||++|+ |||+.|||+||+.++
T Consensus 3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 3 SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 34567789999999999999999999 89999999999 999999999998764
No 24
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.55 E-value=5.2e-15 Score=106.83 Aligned_cols=51 Identities=35% Similarity=0.542 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CChhhhhhhCC--CCCHHHHHHHHHHHhhHH
Q 025299 60 LKRGKMTPQEERLVLELHAKWG-NRWSRIARKLP--GRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 60 l~~~~WT~eED~~Ll~lv~~~G-~~Ws~Ia~~lp--gRT~nq~KnRw~~llrk~ 110 (255)
.++++||+|||++|+++|.+|| .+|..||+.++ |||+.|||+||+++++..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 5788999999999999999999 48999999865 999999999999988753
No 25
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.49 E-value=2.6e-14 Score=105.88 Aligned_cols=52 Identities=13% Similarity=0.304 Sum_probs=48.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 58 PGLKRGKMTPQEERLVLELHAKWG----NRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 58 P~l~~~~WT~eED~~Ll~lv~~~G----~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
+.+.+++||.+||.+|++++.+|| ++|.+||.+|||||++|||+||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 467788999999999999999999 7899999999999999999999988753
No 26
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.49 E-value=1.3e-14 Score=117.04 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=68.5
Q ss_pred CCCCcccCCCcHHHHH-HHHHHHhhcC--Ceeeccc-----CCCCHHHHHHHHHHhcC-----CCCCCC-CCCHHHHHHH
Q 025299 8 TAGELCAAVWRSALGF-YCESFRFEGG--GRQYNRG-----LNRTGKSCRLRWVNYLH-----PGLKRG-KMTPQEERLV 73 (255)
Q Consensus 8 ~a~~l~kg~WT~eED~-llk~v~~~g~--w~~i~~~-----l~Rt~~QCr~RW~n~L~-----P~l~~~-~WT~eED~~L 73 (255)
..+..++++||.+||. |+..|..+|. |..|+.. .+||+.||++||+|+|+ |.++++ +|+++|+.+|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 4567889999999995 6666777664 6666654 49999999999999999 999999 9999999999
Q ss_pred HHHHHHhCCChhh
Q 025299 74 LELHAKWGNRWSR 86 (255)
Q Consensus 74 l~lv~~~G~~Ws~ 86 (255)
+++|..+|++|++
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999987
No 27
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=3.8e-14 Score=100.31 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=45.5
Q ss_pred CCCCcccCCCcHHHHH-HHHHHHhhc--CCeeecccC-CCCHHHHHHHHHHhcCCCCC
Q 025299 8 TAGELCAAVWRSALGF-YCESFRFEG--GGRQYNRGL-NRTGKSCRLRWVNYLHPGLK 61 (255)
Q Consensus 8 ~a~~l~kg~WT~eED~-llk~v~~~g--~w~~i~~~l-~Rt~~QCr~RW~n~L~P~l~ 61 (255)
.+|.++++.||++||. |++.|..+| .|..|+..+ +||++||++||.++|+|+++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999999996 555566666 477777777 99999999999999999986
No 28
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.44 E-value=1.3e-13 Score=111.46 Aligned_cols=75 Identities=23% Similarity=0.238 Sum_probs=64.2
Q ss_pred CCCcccCCCcHHHHH-HHHHHHhhcC--Ceeeccc-----CCCCHHHHHHHHHHhc-----CCCCCCCCCCHHH-HHHHH
Q 025299 9 AGELCAAVWRSALGF-YCESFRFEGG--GRQYNRG-----LNRTGKSCRLRWVNYL-----HPGLKRGKMTPQE-ERLVL 74 (255)
Q Consensus 9 a~~l~kg~WT~eED~-llk~v~~~g~--w~~i~~~-----l~Rt~~QCr~RW~n~L-----~P~l~~~~WT~eE-D~~Ll 74 (255)
....++++||.+||+ |+..|..+|. |..|+.. .+||+.||++||+|+| +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 456789999999995 6666777765 5556543 4999999999999999 8999999999999 89999
Q ss_pred HHHHHhCCC
Q 025299 75 ELHAKWGNR 83 (255)
Q Consensus 75 ~lv~~~G~~ 83 (255)
++|..||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999986
No 29
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.42 E-value=9.9e-14 Score=104.08 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHH
Q 025299 59 GLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTH 106 (255)
Q Consensus 59 ~l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~l 106 (255)
...+++||.|||++|+++|.+||.+|.+||.+|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999765
No 30
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=2.5e-13 Score=97.41 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChhhhh---hhCCCCCHHHHHHHHHHHhhH
Q 025299 60 LKRGKMTPQEERLVLELHAKWGNRWSRIA---RKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 60 l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia---~~lpgRT~nq~KnRw~~llrk 109 (255)
-++.+||+|||+.|++.|++||.+|++|+ .+|++||+.+||+||++++|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36889999999999999999999999999 578999999999999999886
No 31
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.41 E-value=1.5e-13 Score=94.51 Aligned_cols=48 Identities=29% Similarity=0.457 Sum_probs=40.2
Q ss_pred cccCCCcHHHHH-HHHHHHhhcC--CeeecccC-CCCHHHHHHHHHHhcCCC
Q 025299 12 LCAAVWRSALGF-YCESFRFEGG--GRQYNRGL-NRTGKSCRLRWVNYLHPG 59 (255)
Q Consensus 12 l~kg~WT~eED~-llk~v~~~g~--w~~i~~~l-~Rt~~QCr~RW~n~L~P~ 59 (255)
|++|.||++||. |++.+..+|. |..|+..+ +||++||++||.+||+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 579999999995 5566666663 67777777 999999999999999995
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.38 E-value=4.3e-13 Score=104.34 Aligned_cols=50 Identities=36% Similarity=0.739 Sum_probs=46.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhhCCCCCHHHHHHHHHHHhh
Q 025299 59 GLKRGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMR 108 (255)
Q Consensus 59 ~l~~~~WT~eED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~nq~KnRw~~llr 108 (255)
+|++++||+|||++|+++|.+||. +|..||.+|||||+.||++||..+|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccC
Confidence 478999999999999999999997 69999999999999999999998764
No 33
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.38 E-value=6.5e-13 Score=100.59 Aligned_cols=49 Identities=20% Similarity=0.421 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC-Chhhhhhh----CCCCCHHHHHHHHHHHhhHHH
Q 025299 63 GKMTPQEERLVLELHAKWGN-RWSRIARK----LPGRTDNEIKNYWRTHMRKKA 111 (255)
Q Consensus 63 ~~WT~eED~~Ll~lv~~~G~-~Ws~Ia~~----lpgRT~nq~KnRw~~llrk~~ 111 (255)
.+||+|||+.|+++|++||. +|+.|++. |+|||+++||+||++++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999998 99999995 899999999999999998653
No 34
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.38 E-value=2.5e-13 Score=120.58 Aligned_cols=55 Identities=24% Similarity=0.504 Sum_probs=48.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------hhhhhhhCCCCCHHHHHHHHHHHhhHHHH
Q 025299 58 PGLKRGKMTPQEERLVLELHAKWGNR------WSRIARKLPGRTDNEIKNYWRTHMRKKAQ 112 (255)
Q Consensus 58 P~l~~~~WT~eED~~Ll~lv~~~G~~------Ws~Ia~~lpgRT~nq~KnRw~~llrk~~~ 112 (255)
+.+++++||+|||++||++|+++|++ |..||++|||||+++|||||+.+|+++..
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 46789999999999999999999986 99999999999999999999999998744
No 35
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.36 E-value=6.2e-13 Score=107.12 Aligned_cols=52 Identities=25% Similarity=0.576 Sum_probs=48.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhh
Q 025299 57 HPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMR 108 (255)
Q Consensus 57 ~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llr 108 (255)
.+.+++++||+|||++|+++|.+||.+|..||..|+|||..||+.||+.++.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcc
Confidence 4578899999999999999999999999999999999999999999998874
No 36
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.36 E-value=3.6e-13 Score=92.55 Aligned_cols=48 Identities=25% Similarity=0.378 Sum_probs=38.8
Q ss_pred cccCCCcHHHHH-HHHHHHhhcC--CeeecccC-CCCHHHHHHHHHHhcCCC
Q 025299 12 LCAAVWRSALGF-YCESFRFEGG--GRQYNRGL-NRTGKSCRLRWVNYLHPG 59 (255)
Q Consensus 12 l~kg~WT~eED~-llk~v~~~g~--w~~i~~~l-~Rt~~QCr~RW~n~L~P~ 59 (255)
+++|.||++||. |++.+..+|. |..|+..+ +||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 578999999995 5556666665 66677777 999999999999999995
No 37
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.35 E-value=9.3e-13 Score=106.22 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=50.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-Chhhhhhh----CCCCCHHHHHHHHHHHhhHH
Q 025299 56 LHPGLKRGKMTPQEERLVLELHAKWGN-RWSRIARK----LPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 56 L~P~l~~~~WT~eED~~Ll~lv~~~G~-~Ws~Ia~~----lpgRT~nq~KnRw~~llrk~ 110 (255)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+++||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 566788999999999999999999998 99999998 49999999999999999864
No 38
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.9e-13 Score=98.51 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=47.3
Q ss_pred CCCCCCcccCCCcHHHHHHH-HHHHhhcC-CeeecccCCCCHHHHHHHHHHhcCCCCCCCC
Q 025299 6 GHTAGELCAAVWRSALGFYC-ESFRFEGG-GRQYNRGLNRTGKSCRLRWVNYLHPGLKRGK 64 (255)
Q Consensus 6 g~~a~~l~kg~WT~eED~ll-k~v~~~g~-w~~i~~~l~Rt~~QCr~RW~n~L~P~l~~~~ 64 (255)
|...|.++++.||++||.+| +.+..+|. |..|+..+|||++||++||.++|+|.++++.
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhcccCcCHHHHHHHHHHHhChHhcCCC
Confidence 56789999999999999655 45555554 5557775599999999999999999877653
No 39
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.33 E-value=2.2e-12 Score=99.60 Aligned_cols=51 Identities=22% Similarity=0.416 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CChhhhhhhCCCCCHHHHHHHHHHHhhHHH
Q 025299 61 KRGKMTPQEERLVLELHAKWG----NRWSRIARKLPGRTDNEIKNYWRTHMRKKA 111 (255)
Q Consensus 61 ~~~~WT~eED~~Ll~lv~~~G----~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~~ 111 (255)
.+++||.|||++|++++.+|| ++|.+||.+|||||+++||+||+.+++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999996 789999999999999999999999887643
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.32 E-value=2.1e-12 Score=101.79 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=48.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhhC----CCCCHHHHHHHHHHHhhHH
Q 025299 57 HPGLKRGKMTPQEERLVLELHAKWGN-RWSRIARKL----PGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 57 ~P~l~~~~WT~eED~~Ll~lv~~~G~-~Ws~Ia~~l----pgRT~nq~KnRw~~llrk~ 110 (255)
.+..++++||.|||+.|++.|.+||. +|+.|++.+ +|||+++||+||++++++.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 45678999999999999999999997 999999965 8999999999999999863
No 41
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.30 E-value=1.8e-12 Score=94.18 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=47.5
Q ss_pred CCCCcccCCCcHHHHH-HHHHHHhhc--CCeeecccC---CCCHHHHHHHHHHhcCCCCCCCCCC
Q 025299 8 TAGELCAAVWRSALGF-YCESFRFEG--GGRQYNRGL---NRTGKSCRLRWVNYLHPGLKRGKMT 66 (255)
Q Consensus 8 ~a~~l~kg~WT~eED~-llk~v~~~g--~w~~i~~~l---~Rt~~QCr~RW~n~L~P~l~~~~WT 66 (255)
..+..+++.||++||. |+..|..+| .|..|+..+ +||+.||++||.++|+|.|.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 4567889999999995 555666666 366676554 7999999999999999999988753
No 42
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.27 E-value=3.9e-12 Score=99.60 Aligned_cols=47 Identities=21% Similarity=0.493 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChhhhhhhCCCCCHHHHHHHHHHHhh
Q 025299 62 RGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMR 108 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~nq~KnRw~~llr 108 (255)
+++||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHc
Confidence 578999999999999999996 89999999999999999999998876
No 43
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.25 E-value=3.8e-12 Score=90.21 Aligned_cols=53 Identities=13% Similarity=0.282 Sum_probs=44.0
Q ss_pred CCCCcccCCCcHHHHH-HHHHHHhhc--CCeeecccC-CCCHHHHHHHHHHhcCCCC
Q 025299 8 TAGELCAAVWRSALGF-YCESFRFEG--GGRQYNRGL-NRTGKSCRLRWVNYLHPGL 60 (255)
Q Consensus 8 ~a~~l~kg~WT~eED~-llk~v~~~g--~w~~i~~~l-~Rt~~QCr~RW~n~L~P~l 60 (255)
.++.+.++.||++||. |++++..+| +|..|+..+ +||++||++||.+||.+..
T Consensus 2 ss~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 2 SSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 4678999999999995 667777777 477777766 9999999999999998753
No 44
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.25 E-value=6.9e-12 Score=101.53 Aligned_cols=47 Identities=30% Similarity=0.642 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChhhhhhhCCCCCHHHHHHHHHHHhh
Q 025299 62 RGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHMR 108 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~G-~~Ws~Ia~~lpgRT~nq~KnRw~~llr 108 (255)
+|+||+|||++|+++|.+|| .+|..||.+|||||+.||+.||..+|.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccC
Confidence 68999999999999999999 689999999999999999999998885
No 45
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.24 E-value=3e-12 Score=92.29 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=40.1
Q ss_pred CCcccCCCcHHHHH-HHHHHHhhcC--Ceeeccc--C-CCCHHHHHHHHHHhcCCCCC
Q 025299 10 GELCAAVWRSALGF-YCESFRFEGG--GRQYNRG--L-NRTGKSCRLRWVNYLHPGLK 61 (255)
Q Consensus 10 ~~l~kg~WT~eED~-llk~v~~~g~--w~~i~~~--l-~Rt~~QCr~RW~n~L~P~l~ 61 (255)
...+++.||++||+ |++.|..+|. |..|+.. + +||+.||++||.|+++|+|+
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 34679999999995 5566677763 6667654 2 89999999999999999875
No 46
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.24 E-value=1e-11 Score=100.21 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=48.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-Chhhhhhh----CCCCCHHHHHHHHHHHhhHH
Q 025299 57 HPGLKRGKMTPQEERLVLELHAKWGN-RWSRIARK----LPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 57 ~P~l~~~~WT~eED~~Ll~lv~~~G~-~Ws~Ia~~----lpgRT~nq~KnRw~~llrk~ 110 (255)
....++++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567889999999999999999997 99999996 49999999999999999865
No 47
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.23 E-value=1.7e-11 Score=94.57 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhhC-----CCCCHHHHHHHHHHHhhHHHHhh
Q 025299 47 SCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKL-----PGRTDNEIKNYWRTHMRKKAQER 114 (255)
Q Consensus 47 QCr~RW~n~L~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~l-----pgRT~nq~KnRw~~llrk~~~~~ 114 (255)
=|.++|.++|.+ .+||.||+..|++|+++||.+|..|+.++ ++||..+||+||..+.++....+
T Consensus 19 yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 19 YSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 467999999987 79999999999999999999999999999 58999999999999999887766
No 48
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=6.2e-12 Score=92.62 Aligned_cols=57 Identities=18% Similarity=0.118 Sum_probs=46.8
Q ss_pred CCCCcccCCCcHHHHH-HHHHHHhhc-------CCeeecccC-CCCHHHHHHHHHHhcCCCCCCCC
Q 025299 8 TAGELCAAVWRSALGF-YCESFRFEG-------GGRQYNRGL-NRTGKSCRLRWVNYLHPGLKRGK 64 (255)
Q Consensus 8 ~a~~l~kg~WT~eED~-llk~v~~~g-------~w~~i~~~l-~Rt~~QCr~RW~n~L~P~l~~~~ 64 (255)
..|.+.++.||.+||. |++.|..+| .|..|+..+ +||++||++||++||.+.++++.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 4688999999999995 556666666 366677776 99999999999999999887764
No 49
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.10 E-value=2.2e-11 Score=89.16 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=46.4
Q ss_pred CCCCCCcccCCCcHHHHH-HHHHHHhhcC-CeeecccC-CCCHHHHHHHHHHhcCCCCCC
Q 025299 6 GHTAGELCAAVWRSALGF-YCESFRFEGG-GRQYNRGL-NRTGKSCRLRWVNYLHPGLKR 62 (255)
Q Consensus 6 g~~a~~l~kg~WT~eED~-llk~v~~~g~-w~~i~~~l-~Rt~~QCr~RW~n~L~P~l~~ 62 (255)
|-.+|.+++++||.+||. |++++..+|. |..|+..+ +||+.||+.||.+||.+.++.
T Consensus 1 gs~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 1 GSSGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 456789999999999995 5566666665 55677666 999999999999999887665
No 50
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.08 E-value=6.3e-11 Score=83.48 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=39.7
Q ss_pred CCCCCCcccCCCcHHHHH-HHHHHHhhc--CCeeecccC--CCCHHHHHHHHHHhc
Q 025299 6 GHTAGELCAAVWRSALGF-YCESFRFEG--GGRQYNRGL--NRTGKSCRLRWVNYL 56 (255)
Q Consensus 6 g~~a~~l~kg~WT~eED~-llk~v~~~g--~w~~i~~~l--~Rt~~QCr~RW~n~L 56 (255)
|-...++.++.||++||. |++.|..+| +|..|+..+ +||++||++||.+++
T Consensus 1 g~~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 1 GSSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 344567889999999995 666666666 467777655 699999999999975
No 51
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2.1e-10 Score=81.57 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhh
Q 025299 61 KRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMR 108 (255)
Q Consensus 61 ~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llr 108 (255)
...+||++|++++++++.+||.+|.+||.+||+||..+|+++|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999999999999999999999999975443
No 52
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.05 E-value=1e-10 Score=80.69 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=35.6
Q ss_pred ccCCCcHHHHH-HHHHHHhhc--CCeeecccC---CCCHHHHHHHHHHhcC
Q 025299 13 CAAVWRSALGF-YCESFRFEG--GGRQYNRGL---NRTGKSCRLRWVNYLH 57 (255)
Q Consensus 13 ~kg~WT~eED~-llk~v~~~g--~w~~i~~~l---~Rt~~QCr~RW~n~L~ 57 (255)
++|+||++||. |+..|..+| +|..|+..+ +||+.||++||.++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 57999999995 566666666 366666554 6999999999999875
No 53
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.98 E-value=6.2e-10 Score=84.17 Aligned_cols=66 Identities=23% Similarity=0.275 Sum_probs=52.8
Q ss_pred CCCcHHHHH-HHHHHHhhcC--Ceeeccc----C-CCCHHHHHHHHHHhc-----CCCCCCC-CCCHHHHHHHHHHHHHh
Q 025299 15 AVWRSALGF-YCESFRFEGG--GRQYNRG----L-NRTGKSCRLRWVNYL-----HPGLKRG-KMTPQEERLVLELHAKW 80 (255)
Q Consensus 15 g~WT~eED~-llk~v~~~g~--w~~i~~~----l-~Rt~~QCr~RW~n~L-----~P~l~~~-~WT~eED~~Ll~lv~~~ 80 (255)
.+||.+||. |+..|..+|. |..|+.. + +||+.||++||+|+| +|.++++ +..++...+++.|+..+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~~ 80 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYW 80 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHHH
Confidence 479999995 6677777775 6666653 3 999999999999988 7887766 67888889999998753
No 54
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.96 E-value=7.4e-10 Score=81.61 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=45.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 58 PGLKRGKMTPQEERLVLELHAKWG----NRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 58 P~l~~~~WT~eED~~Ll~lv~~~G----~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
...+.+.||.|||++|.+++.+|+ .+|.+||.+| |||..+|++||+.+.+.
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 345678999999999999999997 6899999998 99999999999988654
No 55
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.94 E-value=8.5e-10 Score=86.89 Aligned_cols=75 Identities=21% Similarity=0.227 Sum_probs=60.1
Q ss_pred CCCCcccCCCcHHHHH-HHHHHHhhcC--Ceeeccc-----CCCCHHHHHHHHHHhc-----CCCCCCCCCCHHHHHH-H
Q 025299 8 TAGELCAAVWRSALGF-YCESFRFEGG--GRQYNRG-----LNRTGKSCRLRWVNYL-----HPGLKRGKMTPQEERL-V 73 (255)
Q Consensus 8 ~a~~l~kg~WT~eED~-llk~v~~~g~--w~~i~~~-----l~Rt~~QCr~RW~n~L-----~P~l~~~~WT~eED~~-L 73 (255)
.....++++||.+||+ |+..|..+|. |..|+.. .+||+.||++||+|+| +|.++++.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 4567889999999995 6666777765 5556553 3999999999999999 7999999888887766 8
Q ss_pred HHHHHHhCC
Q 025299 74 LELHAKWGN 82 (255)
Q Consensus 74 l~lv~~~G~ 82 (255)
++|+..+|+
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899988774
No 56
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.93 E-value=5.8e-10 Score=82.42 Aligned_cols=57 Identities=11% Similarity=-0.074 Sum_probs=40.2
Q ss_pred CCCCCCCcccCCCcHHHHH-HHHHHHhhcC-CeeecccCCCCHHHHHHHHHHhcCCCCCC
Q 025299 5 GGHTAGELCAAVWRSALGF-YCESFRFEGG-GRQYNRGLNRTGKSCRLRWVNYLHPGLKR 62 (255)
Q Consensus 5 ~g~~a~~l~kg~WT~eED~-llk~v~~~g~-w~~i~~~l~Rt~~QCr~RW~n~L~P~l~~ 62 (255)
.-+..|.+++|+||++||+ |++.+...|. |..|+..+|||+.||+.||. .|....+.
T Consensus 14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~lgRt~~q~knRw~-~L~~~~~~ 72 (73)
T 2llk_A 14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCR-LMKDTCNT 72 (73)
T ss_dssp -----CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHHTSCHHHHHHHHH-HCSCCCSC
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHhCCCHHHHHHHHH-HHHHHccC
Confidence 3456789999999999996 5555666664 66676666999999999997 46555443
No 57
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.79 E-value=4.4e-09 Score=92.71 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 62 RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
..+||.||++++++++.+||++|..||+.+++||.+|||++|+...++
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999987766
No 58
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.71 E-value=8.3e-09 Score=76.16 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=39.9
Q ss_pred CCCCcccCCCcHHHHH-HHHHHHhhc-----CCeeecccC-CCCHHHHHHHHHHhcC
Q 025299 8 TAGELCAAVWRSALGF-YCESFRFEG-----GGRQYNRGL-NRTGKSCRLRWVNYLH 57 (255)
Q Consensus 8 ~a~~l~kg~WT~eED~-llk~v~~~g-----~w~~i~~~l-~Rt~~QCr~RW~n~L~ 57 (255)
..+...++.||.+||. |+.++..+| .|..|+..+ |||.+||+.||.+++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3457789999999996 455566665 377788888 9999999999998765
No 59
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.16 E-value=1.7e-09 Score=82.49 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=42.1
Q ss_pred CCCCCcccCCCcHHHHH-HHHHHHhhcC-CeeecccC-CCCHHHHHHHHHHhcCC
Q 025299 7 HTAGELCAAVWRSALGF-YCESFRFEGG-GRQYNRGL-NRTGKSCRLRWVNYLHP 58 (255)
Q Consensus 7 ~~a~~l~kg~WT~eED~-llk~v~~~g~-w~~i~~~l-~Rt~~QCr~RW~n~L~P 58 (255)
-..+.+.+|.||.+||. |+..+..+|. |..|+..+ |||+.||+.||.++|.-
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 34678999999999995 5566666664 66677777 99999999999999873
No 60
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.60 E-value=1.6e-08 Score=75.63 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=36.0
Q ss_pred CcccCCCcHHHHH-HHHHHHhhcC-CeeecccC-CCCHHHHHHHHHHh
Q 025299 11 ELCAAVWRSALGF-YCESFRFEGG-GRQYNRGL-NRTGKSCRLRWVNY 55 (255)
Q Consensus 11 ~l~kg~WT~eED~-llk~v~~~g~-w~~i~~~l-~Rt~~QCr~RW~n~ 55 (255)
...++.||.+||. ||++|..+|+ |..|+..+ +||..||++||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4558999999995 6666776664 55677666 89999999999997
No 61
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.60 E-value=4e-08 Score=72.55 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 62 RGKMTPQEERLVLELHAKWGN----RWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~G~----~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
...||.+|+.+|.++...|+. +|.+||..+||||..+|+.||..+++..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 457999999999999999984 7999999999999999999999886543
No 62
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.51 E-value=1.1e-07 Score=72.61 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChhhhhhhCCCCCHHHHHHHHHHHhhHHH
Q 025299 64 KMTPQEERLVLELHAKWGN---RWSRIARKLPGRTDNEIKNYWRTHMRKKA 111 (255)
Q Consensus 64 ~WT~eED~~Ll~lv~~~G~---~Ws~Ia~~lpgRT~nq~KnRw~~llrk~~ 111 (255)
-||.|||+.||..+++-|. .|+.||+.|.+|+.+||+|||+.||+--.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 6999999999999999997 89999999999999999999999997643
No 63
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.45 E-value=2.1e-07 Score=65.86 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-hhhhhh-hCCCCCHHHHHHHHHHHhh
Q 025299 62 RGKMTPQEERLVLELHAKW--------GNR-WSRIAR-KLPGRTDNEIKNYWRTHMR 108 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~--------G~~-Ws~Ia~-~lpgRT~nq~KnRw~~llr 108 (255)
|.+||+|||++|++.|.++ |++ |..++. .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 554 999999 7999999999999987764
No 64
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.79 E-value=2.8e-08 Score=72.12 Aligned_cols=45 Identities=22% Similarity=0.382 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 64 KMTPQEERLVLELHAKWGN---RWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 64 ~WT~eED~~Ll~lv~~~G~---~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
-||.|||+.||..+++-|. .|..||..| +||.+||+|||..|++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999997 899999999 99999999999998864
No 65
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.25 E-value=3.2e-06 Score=65.03 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=54.1
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhhCC-----CCCHHHHHHHHHHHhhHHHHhhh
Q 025299 50 LRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLP-----GRTDNEIKNYWRTHMRKKAQERK 115 (255)
Q Consensus 50 ~RW~n~L~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lp-----gRT~nq~KnRw~~llrk~~~~~~ 115 (255)
+.|..+|.. ..||.||-..|++|+++|+-+|..|+.++. .||-.++|+||..+.++..+.+.
T Consensus 22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 457777763 689999999999999999999999999874 79999999999999998776653
No 66
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.21 E-value=6.9e-07 Score=68.72 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=33.8
Q ss_pred ccCCCcHHHHHHH-HHHHhhc-----CCeeecccC-CCCHHHHHHHHHHhc
Q 025299 13 CAAVWRSALGFYC-ESFRFEG-----GGRQYNRGL-NRTGKSCRLRWVNYL 56 (255)
Q Consensus 13 ~kg~WT~eED~ll-k~v~~~g-----~w~~i~~~l-~Rt~~QCr~RW~n~L 56 (255)
.++.||.+||.+| .++..++ .|..|+..+ |||.+||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4689999999655 5555554 266788877 999999999999864
No 67
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=4.1e-06 Score=59.75 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=45.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhh-hCCCCCHHHHHHHHHH
Q 025299 57 HPGLKRGKMTPQEERLVLELHAKWGNRWSRIAR-KLPGRTDNEIKNYWRT 105 (255)
Q Consensus 57 ~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~-~lpgRT~nq~KnRw~~ 105 (255)
.|.+....||+||-++.++.+.+||..|..|++ .|++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 477888999999999999999999999999999 5899999999999863
No 68
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.03 E-value=1.1e-06 Score=64.83 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChhhhhhhCCCCCHHHHHHHHH
Q 025299 62 RGKMTPQEERLVLELHAKWGN----RWSRIARKLPGRTDNEIKNYWR 104 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~G~----~Ws~Ia~~lpgRT~nq~KnRw~ 104 (255)
...||.+|+++|.++...|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 357999999999999999985 8999999999999999999985
No 69
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.70 E-value=3.1e-05 Score=74.94 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhh
Q 025299 62 RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMR 108 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llr 108 (255)
..+||.+|-+++++++.+||..|..||.++..||..|||++|....+
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999975444
No 70
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.69 E-value=6.2e-05 Score=57.73 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHH
Q 025299 63 GKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRT 105 (255)
Q Consensus 63 ~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~ 105 (255)
..||++|-++..+....||.+|.+|+..||+||..+|-..|..
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999864
No 71
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=5.5e-05 Score=53.34 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=35.8
Q ss_pred CCcccCCCcHHHHH-HHHHHHhhcC-CeeecccC-CCCHHHHHHHHHHhc
Q 025299 10 GELCAAVWRSALGF-YCESFRFEGG-GRQYNRGL-NRTGKSCRLRWVNYL 56 (255)
Q Consensus 10 ~~l~kg~WT~eED~-llk~v~~~g~-w~~i~~~l-~Rt~~QCr~RW~n~L 56 (255)
..-..+.||++|+. ++..+..+|. |..|+..+ +||..||+++|....
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 33456899999995 6666666665 56677777 999999999997653
No 72
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.59 E-value=0.00012 Score=53.24 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhh-hCCCCCHHHHHHHHH
Q 025299 62 RGKMTPQEERLVLELHAKWGNRWSRIAR-KLPGRTDNEIKNYWR 104 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~-~lpgRT~nq~KnRw~ 104 (255)
...||++|-++..+.+.+||..|..|++ .|++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 599999999999997
No 73
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.55 E-value=5.4e-05 Score=55.43 Aligned_cols=48 Identities=13% Similarity=-0.012 Sum_probs=35.7
Q ss_pred CCcccCCCcHHHHH-HHHHHHhhc-----CCeeecccCCCCHHHHHHHHHHhcC
Q 025299 10 GELCAAVWRSALGF-YCESFRFEG-----GGRQYNRGLNRTGKSCRLRWVNYLH 57 (255)
Q Consensus 10 ~~l~kg~WT~eED~-llk~v~~~g-----~w~~i~~~l~Rt~~QCr~RW~n~L~ 57 (255)
...+.+.||.+||. +.+++..++ .|..|+..+|||..||+.||.....
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34567899999995 445555554 2666787789999999999987543
No 74
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.47 E-value=0.00014 Score=51.97 Aligned_cols=49 Identities=6% Similarity=-0.046 Sum_probs=37.6
Q ss_pred CCCcccCCCcHHHHH-HHHHHHhhcC-Ceeec---ccC-CCCHHHHHHHHHHhcC
Q 025299 9 AGELCAAVWRSALGF-YCESFRFEGG-GRQYN---RGL-NRTGKSCRLRWVNYLH 57 (255)
Q Consensus 9 a~~l~kg~WT~eED~-llk~v~~~g~-w~~i~---~~l-~Rt~~QCr~RW~n~L~ 57 (255)
++.-.+..||++||+ |++.|..+|. |..|+ ..+ +||....++||++...
T Consensus 3 ~~~~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 3 SGSSGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCCCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 456689999999995 6677777776 44455 244 9999999999998654
No 75
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.15 E-value=0.0003 Score=49.46 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=33.2
Q ss_pred cCCCcHHHH-HHHHHHHhh--------cC--Ceeecc--cCCCCHHHHHHHHHHhcC
Q 025299 14 AAVWRSALG-FYCESFRFE--------GG--GRQYNR--GLNRTGKSCRLRWVNYLH 57 (255)
Q Consensus 14 kg~WT~eED-~llk~v~~~--------g~--w~~i~~--~l~Rt~~QCr~RW~n~L~ 57 (255)
+-++|.+|| .|++.|... |+ |+.++. ..++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 568999999 567777665 33 444555 349999999999999985
No 76
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.93 E-value=0.00061 Score=50.72 Aligned_cols=51 Identities=16% Similarity=0.386 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CChhhhhhhCC----CCCHHHHHHHHHHHhhHHHH
Q 025299 62 RGKMTPQEERLVLELHAKWG----------NRWSRIARKLP----GRTDNEIKNYWRTHMRKKAQ 112 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~G----------~~Ws~Ia~~lp----gRT~nq~KnRw~~llrk~~~ 112 (255)
...||.+|-.+||+++.++- ..|..||..|. .||+.||+++|.+|.+.-.+
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45799999999999997633 15999999873 79999999999988877543
No 77
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.84 E-value=0.0007 Score=49.74 Aligned_cols=44 Identities=9% Similarity=0.142 Sum_probs=33.5
Q ss_pred cCCCcHHHHH-HHHHHHhhcC-----CeeecccC-CCCHHHHHHHHHHhcC
Q 025299 14 AAVWRSALGF-YCESFRFEGG-----GRQYNRGL-NRTGKSCRLRWVNYLH 57 (255)
Q Consensus 14 kg~WT~eED~-llk~v~~~g~-----w~~i~~~l-~Rt~~QCr~RW~n~L~ 57 (255)
...||.+|+. +..++..+.. |..|+..+ |||..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4689999995 4455665543 66688777 8999999999987654
No 78
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=96.72 E-value=0.001 Score=58.57 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=37.0
Q ss_pred cccCCCcHHHH-HHHHHHHhhcC-CeeecccC-CCCHHHHHHHHHHhcC
Q 025299 12 LCAAVWRSALG-FYCESFRFEGG-GRQYNRGL-NRTGKSCRLRWVNYLH 57 (255)
Q Consensus 12 l~kg~WT~eED-~llk~v~~~g~-w~~i~~~l-~Rt~~QCr~RW~n~L~ 57 (255)
-..+.||.+|+ .+++++..+|+ |..|+..+ +||..||+..|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45789999999 46677777775 66677666 9999999999998764
No 79
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.58 E-value=0.046 Score=38.45 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=38.7
Q ss_pred CCCCCCcccCCCcHHHH-HHHHHHHhhcC-Ceeecc-cC-CCCHHHHHHHHHH
Q 025299 6 GHTAGELCAAVWRSALG-FYCESFRFEGG-GRQYNR-GL-NRTGKSCRLRWVN 54 (255)
Q Consensus 6 g~~a~~l~kg~WT~eED-~llk~v~~~g~-w~~i~~-~l-~Rt~~QCr~RW~n 54 (255)
|-..|.++...||.+|- ..++.+..+|. |..|+. .+ +|+..||.+-|..
T Consensus 1 ~~~~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 1 GSSGSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCCCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 45678899999999999 56677777776 556776 45 9999999988764
No 80
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=94.36 E-value=0.016 Score=42.84 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=29.1
Q ss_pred ccCCCcHHHHHHHHHHHhh-------c-----CCeeecc-----cCCCCHHHHHHHHHHhc
Q 025299 13 CAAVWRSALGFYCESFRFE-------G-----GGRQYNR-----GLNRTGKSCRLRWVNYL 56 (255)
Q Consensus 13 ~kg~WT~eED~llk~v~~~-------g-----~w~~i~~-----~l~Rt~~QCr~RW~n~L 56 (255)
+...||.+|-.+|-.+... + -|..|+. +..||+.||+.+|.|..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3568999999544333322 1 1445543 34899999999999854
No 81
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.08 E-value=0.055 Score=49.47 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=43.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----Chhhhh---h---------hCCCCCHHHHHHHHHHHhhH
Q 025299 59 GLKRGKMTPQEERLVLELHAKWGN----RWSRIA---R---------KLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 59 ~l~~~~WT~eED~~Ll~lv~~~G~----~Ws~Ia---~---------~lpgRT~nq~KnRw~~llrk 109 (255)
..+...||.+||+.||-.+.+||- .|..|. + ++.-||..+|..|.++|++-
T Consensus 209 ~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 209 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 335568999999999999999994 699996 2 45679999999999999864
No 82
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.01 E-value=0.18 Score=35.92 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=39.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---hhhhhhhC--CCCCHHHHHHHHHHH
Q 025299 60 LKRGKMTPQEERLVLELHAKWGNR---WSRIARKL--PGRTDNEIKNYWRTH 106 (255)
Q Consensus 60 l~~~~WT~eED~~Ll~lv~~~G~~---Ws~Ia~~l--pgRT~nq~KnRw~~l 106 (255)
..+-.||+|.-+..+++|.++|.. +..|.+.| +|.|-.+|+.|.+..
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 346689999999999999999954 78898875 799999999986543
No 83
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=93.87 E-value=0.026 Score=41.38 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCCCCCCc-ccCCCcHHHHHHHH-HHHhhcC-----CeeecccC-CCCHHHHHHHHH
Q 025299 5 GGHTAGEL-CAAVWRSALGFYCE-SFRFEGG-----GRQYNRGL-NRTGKSCRLRWV 53 (255)
Q Consensus 5 ~g~~a~~l-~kg~WT~eED~llk-~v~~~g~-----w~~i~~~l-~Rt~~QCr~RW~ 53 (255)
+.+|+... ....||.+|+.+++ +++.+.. |..|++.+ |||..+|+.+|.
T Consensus 10 ~~~m~s~~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 10 GSHMASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ------------CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 33444432 24689999996554 4554443 77788777 999999999985
No 84
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=92.37 E-value=0.015 Score=42.04 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=34.2
Q ss_pred cCCCcHHHH-HHHHHHHhhcC----CeeecccCCCCHHHHHHHHHHhc
Q 025299 14 AAVWRSALG-FYCESFRFEGG----GRQYNRGLNRTGKSCRLRWVNYL 56 (255)
Q Consensus 14 kg~WT~eED-~llk~v~~~g~----w~~i~~~l~Rt~~QCr~RW~n~L 56 (255)
--.||++|| .+|...+..|. |..++..|+|++.|..+|++..+
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLM 61 (70)
Confidence 346999999 57777777775 55677888999999999998644
No 85
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.27 E-value=0.24 Score=45.25 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChhhhhhhCCCCCHHHHHHHHHHHh
Q 025299 62 RGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHM 107 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~nq~KnRw~~ll 107 (255)
.+.||..+....+.++.+||. .|..||..++|+|..+|+.++....
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw 156 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW 156 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 457999999999999999996 7999999999999999988765444
No 86
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=92.02 E-value=0.028 Score=54.38 Aligned_cols=42 Identities=17% Similarity=0.349 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHH
Q 025299 63 GKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWR 104 (255)
Q Consensus 63 ~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~ 104 (255)
..||.+|..+..+.+.+||..|.+|+++||+||-.+|-.+|+
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY 231 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYY 231 (482)
T ss_dssp ------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhc
Confidence 479999999999999999999999999999999999988864
No 87
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=91.41 E-value=0.17 Score=38.63 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=37.3
Q ss_pred CCCCCCcccCCCcHHHH-HHHHHHHhhcC----CeeecccC-CCCHHHHHHHHHH
Q 025299 6 GHTAGELCAAVWRSALG-FYCESFRFEGG----GRQYNRGL-NRTGKSCRLRWVN 54 (255)
Q Consensus 6 g~~a~~l~kg~WT~eED-~llk~v~~~g~----w~~i~~~l-~Rt~~QCr~RW~n 54 (255)
++...+-+--.||+++| .+|...+..|. |..++..| +|+..|.++|++.
T Consensus 25 ~~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 25 KVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE 79 (95)
T ss_dssp CCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHH
T ss_pred eecCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHH
Confidence 34555556678999999 57777777765 34467777 7999999999975
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.40 E-value=0.47 Score=40.01 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChhhhhh--hC--C----------CCCHHHHHHHHHHHhh
Q 025299 63 GKMTPQEERLVLELHAKWG-NRWSRIAR--KL--P----------GRTDNEIKNYWRTHMR 108 (255)
Q Consensus 63 ~~WT~eED~~Ll~lv~~~G-~~Ws~Ia~--~l--p----------gRT~nq~KnRw~~llr 108 (255)
..||.+||..||..+.+|| .+|..|.. .| . -++...+..|...||+
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 3699999999999999999 89999976 22 1 2567789999876665
No 89
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.30 E-value=0.3 Score=41.28 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CChhhhhhh--CCCCCHHHHHHHHHHHhhH
Q 025299 61 KRGKMTPQEERLVLELHAKWG---NRWSRIARK--LPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 61 ~~~~WT~eED~~Ll~lv~~~G---~~Ws~Ia~~--lpgRT~nq~KnRw~~llrk 109 (255)
....||..|-+.|++.+.+|| .+|..|+.. |.++|..+|+..+..++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 579999874 8999999999877766654
No 90
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=90.28 E-value=0.31 Score=45.67 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CChhhhhhh------------CCCCCHHHHHHHHHHHhhHH
Q 025299 61 KRGKMTPQEERLVLELHAKWG----NRWSRIARK------------LPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 61 ~~~~WT~eED~~Ll~lv~~~G----~~Ws~Ia~~------------lpgRT~nq~KnRw~~llrk~ 110 (255)
+...||.+||+.||-++.+|| +.|.+|-.. |.-||..+|..|.++|++--
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 455799999999999999999 469998432 35699999999999999754
No 91
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=84.42 E-value=0.78 Score=34.88 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=30.9
Q ss_pred cccCCCcHHHHHHHHHHHhhcCCee--ecccC------CCCHHHHHHHHHHhc
Q 025299 12 LCAAVWRSALGFYCESFRFEGGGRQ--YNRGL------NRTGKSCRLRWVNYL 56 (255)
Q Consensus 12 l~kg~WT~eED~llk~v~~~g~w~~--i~~~l------~Rt~~QCr~RW~n~L 56 (255)
|+...||.+|+..|-.++...+.+| |+... +||..+.++||....
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3458999999965555555444333 43333 799999999998653
No 92
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=83.41 E-value=0.85 Score=34.43 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=31.2
Q ss_pred cCCCcHHHHH-HHHHHHhhcC-CeeecccC-CCCHHHHHHHHHH
Q 025299 14 AAVWRSALGF-YCESFRFEGG-GRQYNRGL-NRTGKSCRLRWVN 54 (255)
Q Consensus 14 kg~WT~eED~-llk~v~~~g~-w~~i~~~l-~Rt~~QCr~RW~n 54 (255)
...||.+|.. ..+.+..+|. |..|+..+ +||..||.+-|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 4679999994 5566666665 55677777 9999999988754
No 93
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=81.91 E-value=0.99 Score=40.45 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChhhhhh
Q 025299 63 GKMTPQEERLVLELHAKWG-NRWSRIAR 89 (255)
Q Consensus 63 ~~WT~eED~~Ll~lv~~~G-~~Ws~Ia~ 89 (255)
..|+.+||..||.-|.+|| .+|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999 68999976
No 94
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=77.19 E-value=3.4 Score=29.34 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=32.4
Q ss_pred ccCCCcHHHH-HHHHHHHhhcC-Ceeecc-cC-CCCHHHHHHHHHH
Q 025299 13 CAAVWRSALG-FYCESFRFEGG-GRQYNR-GL-NRTGKSCRLRWVN 54 (255)
Q Consensus 13 ~kg~WT~eED-~llk~v~~~g~-w~~i~~-~l-~Rt~~QCr~RW~n 54 (255)
....||++|- ..+..+..+|. |..|+. .+ +|+..||.+-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4568999999 46667777775 566776 45 9999999988764
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=74.40 E-value=7.8 Score=34.58 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CChhhhhh--hCCCCCHHHHHHHHHHHhhH
Q 025299 62 RGKMTPQEERLVLELHAKWG---NRWSRIAR--KLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~G---~~Ws~Ia~--~lpgRT~nq~KnRw~~llrk 109 (255)
+++||..|=+.|++.+.+|| .+|..|+. .|+.++...|+.-++.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 48999977 48999999999988866643
No 96
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=71.59 E-value=12 Score=29.19 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=32.3
Q ss_pred HHHHHHHHhC--------CChhhhhhhCCCCC----HHHHHHHHHHHhhHHHHhh
Q 025299 72 LVLELHAKWG--------NRWSRIARKLPGRT----DNEIKNYWRTHMRKKAQER 114 (255)
Q Consensus 72 ~Ll~lv~~~G--------~~Ws~Ia~~lpgRT----~nq~KnRw~~llrk~~~~~ 114 (255)
.|..+|.++| +.|..|+..|.--+ ...+|+.|..+|..-...-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~ 109 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKI 109 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888 48999999883322 5689999999888765553
No 97
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=70.78 E-value=6.3 Score=26.24 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 68 QEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 68 eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
+.+..++.++...|-.+..||..| |-+...|+++....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 556677777778899999999999 88999999987665554
No 98
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=66.71 E-value=4.5 Score=31.29 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=31.0
Q ss_pred HHHHHHHHhC--------CChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 72 LVLELHAKWG--------NRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 72 ~Ll~lv~~~G--------~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
.|..+|.+.| +.|..|+..|.--....+|++|...|-.-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 4778888888 47999999874334889999999888654
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=65.14 E-value=7.3 Score=26.70 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHH----hCCChhhhhhhCCCCCHHHHHHHHHHHhhHHH
Q 025299 68 QEERLVLELHAK----WGNRWSRIARKLPGRTDNEIKNYWRTHMRKKA 111 (255)
Q Consensus 68 eED~~Ll~lv~~----~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~~ 111 (255)
+.+..++.++.- .|-.+..||..| |-+...|+++....+++-.
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 445566666665 578999999999 8999999998776665543
No 100
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=64.92 E-value=9.7 Score=28.67 Aligned_cols=40 Identities=10% Similarity=0.307 Sum_probs=30.1
Q ss_pred HHHHHHHHhC--------CChhhhhhhCCCCC----HHHHHHHHHHHhhHHH
Q 025299 72 LVLELHAKWG--------NRWSRIARKLPGRT----DNEIKNYWRTHMRKKA 111 (255)
Q Consensus 72 ~Ll~lv~~~G--------~~Ws~Ia~~lpgRT----~nq~KnRw~~llrk~~ 111 (255)
.|..+|.+.| +.|..|+..|.--. ...+|..|...|..-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE 99 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFE 99 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHH
Confidence 4677777888 47999999983322 5789999998886643
No 101
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=63.46 E-value=8.9 Score=29.63 Aligned_cols=42 Identities=14% Similarity=0.272 Sum_probs=31.4
Q ss_pred HHHHHHHHhC--------CChhhhhhhCCCCC----HHHHHHHHHHHhhHHHHh
Q 025299 72 LVLELHAKWG--------NRWSRIARKLPGRT----DNEIKNYWRTHMRKKAQE 113 (255)
Q Consensus 72 ~Ll~lv~~~G--------~~Ws~Ia~~lpgRT----~nq~KnRw~~llrk~~~~ 113 (255)
+|..+|.+.| +.|..|+..|.--. ...+|.+|..+|..-...
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~ 97 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMY 97 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5777888888 47999999883222 578999999888765443
No 102
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=62.80 E-value=13 Score=26.59 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 68 QEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 68 eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
+.++.++.|+...|-.-..||..| |-+...|++|....+++-
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 456667778778888999999999 899999999987666553
No 103
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=62.74 E-value=6.4 Score=26.60 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=31.7
Q ss_pred HHHHHHHHHHH----HhCCChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 68 QEERLVLELHA----KWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 68 eED~~Ll~lv~----~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
+.+..++.++. .-|-.+..||..| |-+...|+++....+++-
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34555566655 3578999999999 899999999887666553
No 104
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=60.08 E-value=45 Score=25.72 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=31.7
Q ss_pred HHHHHHHHhC--------CChhhhhhhCCCC--C--HHHHHHHHHHHhhHHHHhh
Q 025299 72 LVLELHAKWG--------NRWSRIARKLPGR--T--DNEIKNYWRTHMRKKAQER 114 (255)
Q Consensus 72 ~Ll~lv~~~G--------~~Ws~Ia~~lpgR--T--~nq~KnRw~~llrk~~~~~ 114 (255)
+|..+|.+.| +.|..|+..|.-- + ...+|++|..+|..-....
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~ 100 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFL 100 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHH
Confidence 4677788888 4799999988322 2 4689999999887755443
No 105
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=55.62 E-value=5.9 Score=31.14 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=31.7
Q ss_pred HHHHHHHHhC--------CChhhhhhhCCCCCHHHHHHHHHHHhhHHHH
Q 025299 72 LVLELHAKWG--------NRWSRIARKLPGRTDNEIKNYWRTHMRKKAQ 112 (255)
Q Consensus 72 ~Ll~lv~~~G--------~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~~~ 112 (255)
.|..+|.+.| +.|..|+..|.--....+|+.|...|-.-..
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 4667777777 3699999987433499999999998877654
No 106
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=54.76 E-value=21 Score=33.28 Aligned_cols=42 Identities=29% Similarity=0.409 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChhhhhhhCC-CCCHHHHHHHH
Q 025299 62 RGKMTPQEERLVLELHAKWGN-RWSRIARKLP-GRTDNEIKNYW 103 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~G~-~Ws~Ia~~lp-gRT~nq~KnRw 103 (255)
.+.||.-+=..++.++.+||. .-..||..|. |.|..+|+.+.
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~ 166 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYA 166 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHH
Confidence 457999999999999999996 4899999997 99999999544
No 107
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=53.16 E-value=6.9 Score=28.93 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=27.8
Q ss_pred HHHHHHHHhC--------CChhhhhhhCC--C--CCHHHHHHHHHHHhhH
Q 025299 72 LVLELHAKWG--------NRWSRIARKLP--G--RTDNEIKNYWRTHMRK 109 (255)
Q Consensus 72 ~Ll~lv~~~G--------~~Ws~Ia~~lp--g--RT~nq~KnRw~~llrk 109 (255)
.|..+|.+.| +.|.+|+..|. . -...++|+.|...|..
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 4667777777 57999999872 2 1257899999877754
No 108
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=52.18 E-value=27 Score=23.62 Aligned_cols=42 Identities=24% Similarity=0.169 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 65 MTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 65 WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
.|+.| ..++.++ ..|-.-..||..| |-+...|+++....+++
T Consensus 17 L~~~e-~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERE-RQVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHH-HHHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44544 4455555 6788899999999 88999999988766654
No 109
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=52.14 E-value=25 Score=27.36 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=32.6
Q ss_pred HHHHHHHHHhC--------CChhhhhhhC--CCC---CHHHHHHHHHHHhhHHHHhh
Q 025299 71 RLVLELHAKWG--------NRWSRIARKL--PGR---TDNEIKNYWRTHMRKKAQER 114 (255)
Q Consensus 71 ~~Ll~lv~~~G--------~~Ws~Ia~~l--pgR---T~nq~KnRw~~llrk~~~~~ 114 (255)
-.|..+|.++| +.|..|+..| +.. ....+|..|...|..-....
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~ 111 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEK 111 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 35777888888 5799999987 332 25799999998887654443
No 110
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=52.09 E-value=15 Score=28.70 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=28.7
Q ss_pred HHHHHHHHhC--------CChhhhhhhC--CCC---CHHHHHHHHHHHhhH
Q 025299 72 LVLELHAKWG--------NRWSRIARKL--PGR---TDNEIKNYWRTHMRK 109 (255)
Q Consensus 72 ~Ll~lv~~~G--------~~Ws~Ia~~l--pgR---T~nq~KnRw~~llrk 109 (255)
+|..+|.++| +.|..|+..| |.. ....+|++|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 5677888888 5799999987 432 256899999877744
No 111
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=51.53 E-value=16 Score=28.67 Aligned_cols=40 Identities=18% Similarity=0.107 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 70 ERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 70 D~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
++.++.++...|-....||..| |-+...|+++....+++-
T Consensus 140 ~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 140 QRALIERAFFGDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp HHHHHHHHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3444555566688899999999 889999999987666553
No 112
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=51.13 E-value=24 Score=27.74 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=27.9
Q ss_pred HHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 73 VLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 73 Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
++.|+...|-....||..| |-+...|++|....+++-
T Consensus 148 vl~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 148 AITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp HHHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3444445577899999999 899999999987665543
No 113
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=50.36 E-value=24 Score=25.52 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 64 KMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 64 ~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
..|+.|-++|. ++ ..|-.-..||..| |-+...|++|....+++-
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46666655544 45 7888999999999 889999999877666553
No 114
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=50.06 E-value=30 Score=25.04 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 61 KRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 61 ~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
.....|..|-++|.-+ . -|..-..||..| |-+...|++|...+++|-
T Consensus 26 ~~~~Lt~rE~~Vl~l~-~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEV-E-KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHH-H-TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHH-H-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3446888777666544 4 788999999999 889999999988777653
No 115
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=49.85 E-value=20 Score=28.69 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=31.9
Q ss_pred HHHHHHHHHhC--------CChhhhhhhC--CCC---CHHHHHHHHHHHhhHHHHh
Q 025299 71 RLVLELHAKWG--------NRWSRIARKL--PGR---TDNEIKNYWRTHMRKKAQE 113 (255)
Q Consensus 71 ~~Ll~lv~~~G--------~~Ws~Ia~~l--pgR---T~nq~KnRw~~llrk~~~~ 113 (255)
-.|..+|.+.| +.|..|+..| +.. ....+|+.|..+|..-...
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~ 122 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECE 122 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 35677788888 4799999987 332 2579999999888765444
No 116
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=47.88 E-value=11 Score=28.41 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=29.6
Q ss_pred HHHHHHHHHhC--------CChhhhhhhCC--CC---CHHHHHHHHHHHhhHH
Q 025299 71 RLVLELHAKWG--------NRWSRIARKLP--GR---TDNEIKNYWRTHMRKK 110 (255)
Q Consensus 71 ~~Ll~lv~~~G--------~~Ws~Ia~~lp--gR---T~nq~KnRw~~llrk~ 110 (255)
-.|..+|.+.| +.|..|+..|. .. ...++|+.|...|..-
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 34677778888 58999999873 21 2468999999888654
No 117
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=47.44 E-value=26 Score=24.64 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 64 KMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 64 ~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
..|+.|-++|. ++ ..|-.-..||..| |-+...|++|....+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 47776665554 44 6788999999999 88999999987766654
No 118
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=46.19 E-value=46 Score=25.04 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHH
Q 025299 62 RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 101 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~Kn 101 (255)
+..=+..-+..|..+....|..|..+|+.| |=+..+|.+
T Consensus 10 ~~~~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 10 SLSGTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp CCSCSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred cCchHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 334577778889999999999999999999 788877665
No 119
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=46.14 E-value=22 Score=25.17 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHH----hCCChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 68 QEERLVLELHAK----WGNRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 68 eED~~Ll~lv~~----~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
+.++.++.+..- .|-.+..||..| |-+...|+++-...+++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 345566666655 577899999999 89999999987665554
No 120
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=46.10 E-value=35 Score=21.88 Aligned_cols=39 Identities=31% Similarity=0.265 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 70 ERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 70 D~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
+..++.+ -..|-.-..||..| |-+...|+++....+++-
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4556666 46788899999999 889999999887766553
No 121
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=43.37 E-value=35 Score=25.70 Aligned_cols=44 Identities=14% Similarity=0.032 Sum_probs=29.6
Q ss_pred cccCCCcHHHHHHHHHHHhhcCCee--eccc------CCCCHHHHHHHHHHh
Q 025299 12 LCAAVWRSALGFYCESFRFEGGGRQ--YNRG------LNRTGKSCRLRWVNY 55 (255)
Q Consensus 12 l~kg~WT~eED~llk~v~~~g~w~~--i~~~------l~Rt~~QCr~RW~n~ 55 (255)
|+...||.+|...|-.++.....+| |... ..||-.+.++||...
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 4457899999965555555554433 3211 279999999999865
No 122
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=41.89 E-value=38 Score=22.45 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 63 GKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 63 ~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
...|+.|-++|.. + ..|..-..||..| |-+...|+.+...+.++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3477766655544 4 6778899999999 88999999988766554
No 123
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=40.98 E-value=31 Score=24.52 Aligned_cols=43 Identities=21% Similarity=0.109 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 64 KMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 64 ~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
..|+.|-++| .++ ..|-.-..||..| |-+...|++|....+++
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3566665554 454 6788999999999 88999999988766655
No 124
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=40.91 E-value=47 Score=24.96 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 68 QEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 68 eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
+.+..++.++...|-....||..| |-+...|++|....+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345667777778899999999999 88999999987655544
No 125
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=39.41 E-value=43 Score=26.96 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 69 EERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 69 ED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
.++.+|.++...|-....||..| |-+...|+.+....+++-
T Consensus 191 ~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 191 REKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERL 231 (239)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 34445555555678899999999 899999999877655543
No 126
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=38.83 E-value=24 Score=27.53 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 68 QEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 68 eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
++++.++.|+...|-.-..||..| |-+.+.||+|....+++-
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~L 137 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAEI 137 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455666777767788899999999 899999999976555443
No 127
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=38.41 E-value=39 Score=25.41 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=25.1
Q ss_pred HHhCCChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 78 AKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 78 ~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
...|-....||..| |-+...|+++....+++
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 45677899999999 88999999998765554
No 128
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=35.71 E-value=33 Score=26.24 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCChhhhhhhCCCCCHHHHHH
Q 025299 70 ERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 101 (255)
Q Consensus 70 D~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~Kn 101 (255)
|..|..+....|..|..+|+.| |=+..+|.+
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567788899999999999999 777777655
No 129
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=34.03 E-value=42 Score=25.79 Aligned_cols=42 Identities=14% Similarity=0.347 Sum_probs=27.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHH
Q 025299 56 LHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 101 (255)
Q Consensus 56 L~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~Kn 101 (255)
+.+.+-...=|.+ .|..++...|..|..+|+.| |=++.+|..
T Consensus 13 ~~~~~~~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 13 IPSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp ---CGGGSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred CCchhccCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3444444455555 46666889999999999999 777766544
No 130
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=33.21 E-value=39 Score=25.93 Aligned_cols=43 Identities=14% Similarity=0.309 Sum_probs=28.8
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHH
Q 025299 55 YLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 101 (255)
Q Consensus 55 ~L~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~Kn 101 (255)
.+.+.+-...=|.+ .|..++...|..|..+|+.| |=++++|..
T Consensus 12 ~~~~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 12 GIPSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp ----CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred CCCchhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 34555555555655 46666889999999999999 777776644
No 131
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=32.53 E-value=1.3e+02 Score=22.03 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 62 RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 62 ~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
....|+.|-++|.- + ..|-.-..||..| |-+...|+++...+++|-
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 45688888876644 4 3688899999999 889999999887766653
No 132
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=31.28 E-value=43 Score=26.42 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCC-ChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 68 QEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 68 eED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
+-|..||++.++-|. .+..||+.+ |=+...|+.|.+.+....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 458889998888775 699999999 899999999998776654
No 133
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=31.18 E-value=55 Score=24.58 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCChhhhhhhCCCCCHHHHHH
Q 025299 70 ERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 101 (255)
Q Consensus 70 D~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~Kn 101 (255)
+..|-.+....|..|..+|++| |=++.+|.+
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4455567788899999999999 777777755
No 134
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=29.86 E-value=77 Score=23.85 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 65 MTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 65 WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
.++ .+..++.++...|-.-..||..+ |-+...|+++.....++
T Consensus 23 L~~-~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTD-KQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCH-HHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444 44666777778899999999999 89999999987755543
No 135
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.02 E-value=1.2e+02 Score=23.15 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCC-ChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 68 QEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 68 eED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
+-|..||.+.++.|. .+..||+.+ |=+...|..|.+.+.+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G 51 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLG 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 446677888777764 799999999 789999999988776554
No 136
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=25.69 E-value=61 Score=25.89 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=24.4
Q ss_pred ecccC-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Q 025299 37 YNRGL-NRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLE 75 (255)
Q Consensus 37 i~~~l-~Rt~~QCr~RW~n~L~P~l~~~~WT~eED~~Ll~ 75 (255)
++.++ |+|+.+||..+. |. ..||+||++.|.+
T Consensus 121 vA~~ikgkt~eeir~~f~------I~-nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 121 VADMIKGKTPEEIRTTFN------IK-NDFTPEEEEEVRR 153 (160)
T ss_dssp HHHTTTTCCHHHHHHHTT------CC-CCCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 45666 999999999873 33 3599999988754
No 137
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=24.72 E-value=61 Score=26.94 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcC-CCCCCCCCCHHHHHHHH
Q 025299 46 KSCRLRWVNYLH-PGLKRGKMTPQEERLVL 74 (255)
Q Consensus 46 ~QCr~RW~n~L~-P~l~~~~WT~eED~~Ll 74 (255)
.+-.+.|..-.. |.-..|-||.++|+.|.
T Consensus 97 ~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 97 RYFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 366777776555 56778999999999886
No 138
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.35 E-value=1.4e+02 Score=21.25 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHH
Q 025299 68 QEERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 101 (255)
Q Consensus 68 eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~Kn 101 (255)
-|.+.|.++..++|.+-++.|+.| |=+...+..
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~r 83 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTA 83 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 477888899999999999999998 555554443
No 139
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.45 E-value=83 Score=26.54 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhhH
Q 025299 64 KMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 109 (255)
Q Consensus 64 ~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk 109 (255)
..++.|- .++.|+ .-|-.-..||..| |.+.+.||+|-...+++
T Consensus 197 ~L~~~er-evl~L~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 197 ILSEREK-EILRCI-RKGLSSKEIAATL-YISVNTVNRHRQNILEK 239 (258)
T ss_dssp SSCHHHH-HHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4555544 455555 5888999999999 99999999998766654
No 140
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.92 E-value=2.2e+02 Score=20.33 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=29.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----ChhhhhhhCC--------------CCCHHHHHHHHHHHh
Q 025299 61 KRGKMTPQEERLVLELHAKWGN----RWSRIARKLP--------------GRTDNEIKNYWRTHM 107 (255)
Q Consensus 61 ~~~~WT~eED~~Ll~lv~~~G~----~Ws~Ia~~lp--------------gRT~nq~KnRw~~ll 107 (255)
.+..||.+.-..|...+.+--. .=..||..+. .-+..+|++-|.+.-
T Consensus 10 ~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR 74 (95)
T 2cuf_A 10 SRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRR 74 (95)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHH
Confidence 3557899887777777766221 1245566551 178899998665443
No 141
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=20.82 E-value=1.3e+02 Score=19.79 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCChhhhhhhCCCCCHH
Q 025299 68 QEERLVLELHAKWGNRWSRIARKLPGRTDN 97 (255)
Q Consensus 68 eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~n 97 (255)
-|.+.|.++...+|.+.++.|+.| |=+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~ 47 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLS 47 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHH
Confidence 477888999999999999999988 44443
No 142
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.80 E-value=1.4e+02 Score=20.56 Aligned_cols=50 Identities=6% Similarity=0.155 Sum_probs=36.2
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhC--CC--hhhhhhhCCCCCHHHHHHHHHH
Q 025299 55 YLHPGLKRGKMTPQEERLVLELHAKWG--NR--WSRIARKLPGRTDNEIKNYWRT 105 (255)
Q Consensus 55 ~L~P~l~~~~WT~eED~~Ll~lv~~~G--~~--Ws~Ia~~lpgRT~nq~KnRw~~ 105 (255)
.++|...+..||.+.-..|...+.... .. =..||..+ |=+..+|++-|.+
T Consensus 5 ~~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqN 58 (76)
T 2dn0_A 5 SSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFSD 58 (76)
T ss_dssp CSCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhHH
Confidence 467888899999998888887776533 21 24566666 8889999985543
No 143
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.25 E-value=1.2e+02 Score=24.19 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCC-ChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 68 QEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 68 eED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
+-|..||++.++.|. .+..||+.+ |-+...|+.|.+.+....
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 69 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 557788888888774 799999999 789999999987776543
No 144
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.22 E-value=1.7e+02 Score=21.55 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=29.0
Q ss_pred HHHHHHHHHHH----hCCChhhhhhhCCCCCHHHHHHHHHHHhhHH
Q 025299 69 EERLVLELHAK----WGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 110 (255)
Q Consensus 69 ED~~Ll~lv~~----~G~~Ws~Ia~~lpgRT~nq~KnRw~~llrk~ 110 (255)
.++.++.+..- -|-....||..| |-+...||++-...+++-
T Consensus 23 reR~Vi~Lry~l~~~e~~s~~EIA~~l-giS~~tVr~~~~rAlkkL 67 (99)
T 3t72_q 23 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 67 (99)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34555555432 246899999999 888898998877666554
Done!