Query 025300
Match_columns 255
No_of_seqs 185 out of 1648
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:26:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 4.1E-50 8.8E-55 352.7 24.1 217 4-221 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 4.1E-47 8.9E-52 329.1 22.9 226 3-230 11-335 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 3.4E-44 7.4E-49 319.9 24.1 216 3-221 12-334 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 5.2E-44 1.1E-48 315.4 23.0 209 6-218 1-316 (317)
5 COG0656 ARA1 Aldo/keto reducta 100.0 1.5E-44 3.3E-49 307.5 17.9 201 3-224 2-268 (280)
6 PLN02587 L-galactose dehydroge 100.0 1.4E-43 3E-48 312.3 23.3 210 6-220 1-300 (314)
7 PRK10625 tas putative aldo-ket 100.0 2.1E-43 4.6E-48 315.0 24.4 214 4-221 1-340 (346)
8 PRK10376 putative oxidoreducta 100.0 4.6E-41 9.9E-46 293.1 24.1 213 6-221 9-289 (290)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 1.3E-40 2.9E-45 289.2 22.9 206 6-217 1-284 (285)
10 KOG1577 Aldo/keto reductase fa 100.0 1.8E-41 3.8E-46 289.0 16.5 195 6-222 6-287 (300)
11 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.4E-39 5.1E-44 280.2 19.0 198 1-222 1-264 (275)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.8E-39 4E-44 281.8 15.8 196 18-219 1-282 (283)
13 PRK11172 dkgB 2,5-diketo-D-glu 100.0 8.1E-39 1.7E-43 275.9 19.7 187 14-221 1-253 (267)
14 COG4989 Predicted oxidoreducta 100.0 4E-39 8.7E-44 264.6 16.5 215 4-223 1-296 (298)
15 KOG1576 Predicted oxidoreducta 100.0 4.9E-38 1.1E-42 260.1 18.5 205 3-209 21-310 (342)
16 COG1453 Predicted oxidoreducta 100.0 1.2E-38 2.6E-43 274.9 14.7 210 4-221 1-286 (391)
17 PRK14863 bifunctional regulato 100.0 6.4E-37 1.4E-41 267.0 16.9 191 13-216 2-278 (292)
18 COG1748 LYS9 Saccharopine dehy 87.3 3.5 7.5E-05 37.6 8.2 81 37-132 79-159 (389)
19 TIGR00126 deoC deoxyribose-pho 60.7 64 0.0014 26.8 8.1 72 35-120 130-205 (211)
20 COG1751 Uncharacterized conser 60.3 38 0.00082 26.7 6.1 72 35-118 12-84 (186)
21 COG0381 WecB UDP-N-acetylgluco 56.6 1.3E+02 0.0029 27.4 9.8 144 38-200 18-185 (383)
22 PRK00507 deoxyribose-phosphate 54.8 61 0.0013 27.1 7.1 75 35-120 134-209 (221)
23 PRK05283 deoxyribose-phosphate 54.4 1.4E+02 0.0031 25.6 9.5 78 35-122 144-227 (257)
24 PF11242 DUF2774: Protein of u 52.0 21 0.00046 23.4 3.0 23 157-179 15-37 (63)
25 PF00356 LacI: Bacterial regul 50.8 31 0.00067 21.2 3.5 42 158-205 2-43 (46)
26 COG3623 SgaU Putative L-xylulo 49.4 24 0.00051 30.0 3.6 77 11-88 65-156 (287)
27 COG4464 CapC Capsular polysacc 45.5 90 0.002 26.2 6.4 29 35-63 18-46 (254)
28 TIGR03277 methan_mark_9 putati 42.8 42 0.00092 24.6 3.6 42 205-249 37-81 (109)
29 COG0274 DeoC Deoxyribose-phosp 42.0 2E+02 0.0043 24.3 8.0 83 16-120 127-213 (228)
30 cd00959 DeoC 2-deoxyribose-5-p 41.0 2E+02 0.0043 23.4 8.4 70 35-118 129-202 (203)
31 PF08263 LRRNT_2: Leucine rich 39.8 42 0.00091 19.8 2.9 38 209-246 2-42 (43)
32 PRK09856 fructoselysine 3-epim 39.6 2.2E+02 0.0047 24.0 8.4 20 38-57 14-33 (275)
33 PF01118 Semialdhyde_dh: Semia 39.5 44 0.00095 24.7 3.6 27 35-61 75-101 (121)
34 PF14502 HTH_41: Helix-turn-he 37.8 41 0.00089 21.0 2.6 31 154-184 5-37 (48)
35 cd04740 DHOD_1B_like Dihydroor 36.6 1.2E+02 0.0027 26.1 6.5 76 35-124 100-186 (296)
36 COG4008 Predicted metal-bindin 36.3 50 0.0011 25.0 3.3 47 196-247 31-80 (153)
37 PRK05406 LamB/YcsF family prot 33.2 1.5E+02 0.0033 25.3 6.1 81 20-117 13-96 (246)
38 PRK05660 HemN family oxidoredu 33.0 2E+02 0.0043 26.0 7.4 27 100-127 171-197 (378)
39 COG0677 WecC UDP-N-acetyl-D-ma 32.8 3.2E+02 0.007 25.3 8.4 69 151-220 225-314 (436)
40 PRK05718 keto-hydroxyglutarate 32.6 2.9E+02 0.0062 22.9 7.7 53 35-89 25-77 (212)
41 PF09391 DUF2000: Protein of u 32.5 99 0.0021 23.7 4.6 47 35-81 62-108 (133)
42 PF11372 DUF3173: Domain of un 32.2 47 0.001 21.7 2.3 33 35-70 15-56 (59)
43 KOG4175 Tryptophan synthase al 31.9 3E+02 0.0066 22.9 7.6 92 12-117 92-202 (268)
44 cd02810 DHOD_DHPD_FMN Dihydroo 31.2 2E+02 0.0044 24.6 7.0 81 35-128 109-197 (289)
45 COG0673 MviM Predicted dehydro 31.1 1.3E+02 0.0028 26.2 5.8 67 157-223 42-118 (342)
46 smart00148 PLCXc Phospholipase 31.0 1.9E+02 0.0042 21.9 6.0 49 40-88 31-97 (135)
47 PRK12569 hypothetical protein; 30.5 1.9E+02 0.0041 24.7 6.3 81 20-117 14-99 (245)
48 PF05049 IIGP: Interferon-indu 29.9 80 0.0017 28.8 4.2 170 48-220 109-301 (376)
49 COG0635 HemN Coproporphyrinoge 29.7 4.5E+02 0.0098 24.2 10.8 77 16-128 148-228 (416)
50 PF10668 Phage_terminase: Phag 29.5 1.1E+02 0.0025 19.9 3.8 17 157-173 24-40 (60)
51 PF00388 PI-PLC-X: Phosphatidy 29.3 44 0.00095 25.6 2.2 48 41-88 30-95 (146)
52 TIGR00126 deoC deoxyribose-pho 28.7 3.4E+02 0.0073 22.5 8.0 80 34-128 15-94 (211)
53 PF14606 Lipase_GDSL_3: GDSL-l 28.3 2.8E+02 0.006 22.4 6.6 94 36-130 48-146 (178)
54 PF05212 DUF707: Protein of un 27.9 49 0.0011 28.9 2.4 69 106-175 54-154 (294)
55 cd00945 Aldolase_Class_I Class 26.7 1.6E+02 0.0036 23.0 5.3 79 36-122 64-147 (201)
56 TIGR02530 flg_new flagellar op 26.7 80 0.0017 22.8 2.9 38 191-228 16-53 (96)
57 COG3215 PilZ Tfp pilus assembl 26.4 2.6E+02 0.0057 20.5 5.5 80 35-116 18-107 (117)
58 TIGR03070 couple_hipB transcri 26.2 82 0.0018 19.2 2.8 21 156-176 5-25 (58)
59 cd00885 cinA Competence-damage 25.9 1.2E+02 0.0026 24.1 4.2 41 42-85 24-65 (170)
60 KOG4079 Putative mitochondrial 25.8 98 0.0021 23.9 3.4 54 165-218 69-125 (169)
61 PRK09413 IS2 repressor TnpA; R 25.1 90 0.002 23.2 3.2 40 35-76 14-53 (121)
62 PF11020 DUF2610: Domain of un 24.1 1.9E+02 0.0041 20.1 4.2 27 150-176 49-75 (82)
63 PRK05339 PEP synthetase regula 23.5 3.6E+02 0.0078 23.4 6.9 162 37-220 16-211 (269)
64 cd02930 DCR_FMN 2,4-dienoyl-Co 23.2 5.2E+02 0.011 23.0 8.3 42 78-123 202-243 (353)
65 COG3830 ACT domain-containing 23.0 2.9E+02 0.0062 19.7 6.4 59 39-119 17-75 (90)
66 KOG2264 Exostosin EXT1L [Signa 22.9 2.2E+02 0.0047 27.6 5.7 60 63-137 632-693 (907)
67 PF01680 SOR_SNZ: SOR/SNZ fami 22.7 47 0.001 27.0 1.2 16 111-126 87-102 (208)
68 PRK10550 tRNA-dihydrouridine s 22.3 4.8E+02 0.01 22.9 7.7 83 35-129 73-170 (312)
69 PRK05826 pyruvate kinase; Prov 22.2 6.6E+02 0.014 23.6 12.0 100 39-168 175-274 (465)
70 COG2185 Sbm Methylmalonyl-CoA 22.0 3.8E+02 0.0083 20.8 8.5 75 38-129 27-102 (143)
71 PLN02746 hydroxymethylglutaryl 21.9 5.8E+02 0.013 23.0 8.1 78 39-130 164-250 (347)
72 PF13518 HTH_28: Helix-turn-he 21.5 1.2E+02 0.0025 18.2 2.7 22 157-179 14-35 (52)
73 PRK07259 dihydroorotate dehydr 21.4 2.7E+02 0.0058 24.1 5.9 78 35-124 102-189 (301)
74 PRK05692 hydroxymethylglutaryl 21.3 5.5E+02 0.012 22.3 8.0 29 33-61 151-179 (287)
75 PF08902 DUF1848: Domain of un 21.2 2.5E+02 0.0054 24.3 5.4 187 35-246 57-264 (266)
76 PRK08446 coproporphyrinogen II 21.0 2.3E+02 0.0049 25.3 5.5 103 16-119 109-222 (350)
77 PRK07379 coproporphyrinogen II 20.7 6.5E+02 0.014 22.9 10.5 27 100-127 179-205 (400)
78 KOG0173 20S proteasome, regula 20.3 93 0.002 26.5 2.6 23 29-51 178-200 (271)
79 PRK09206 pyruvate kinase; Prov 20.2 7.4E+02 0.016 23.4 12.3 103 35-168 171-273 (470)
80 PRK05283 deoxyribose-phosphate 20.1 5.6E+02 0.012 22.0 7.8 79 34-125 23-104 (257)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=4.1e-50 Score=352.74 Aligned_cols=217 Identities=40% Similarity=0.613 Sum_probs=185.9
Q ss_pred CcceecCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCC-CCCEE
Q 025300 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGF-RERAE 82 (255)
Q Consensus 4 m~~~~Lg~tg~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~-R~~v~ 82 (255)
|++|+||++|++||+||||||.+|..+.. .+.+++.++|++|+++||||||||++||.|.||++||++|+... |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~-~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDD-EEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCc-hhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 78999999999999999999999864222 24557788999999999999999999999999999999999854 89999
Q ss_pred EEeccCcCCCC-CCC-CCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCCCCcccc----------------------
Q 025300 83 LATKFGIGIVD-GKY-GYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVT---------------------- 138 (255)
Q Consensus 83 I~tK~~~~~~~-~~~-~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~~~~~~~---------------------- 138 (255)
|+||++....+ ... ..+.+++.|+++++.||+|||||||||||+||||+..+.+++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999887643 211 256799999999999999999999999999999998887764
Q ss_pred ---------------------------------------------cC-----------------------CCCCCCCchh
Q 025300 139 ---------------------------------------------HL-----------------------PRFQPGNLEH 150 (255)
Q Consensus 139 ---------------------------------------------~~-----------------------~~~~~~~~~~ 150 (255)
++ +.|.....+.
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~~~~~r~~~~~~~~~~~~~~ 239 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPGPEGSRASELPRFQRELTER 239 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCCcchhhccccccchhhhhHH
Confidence 00 1111112234
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhcc
Q 025300 151 NQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASA 221 (255)
Q Consensus 151 ~~~~~~~l~~ia~~~g~s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~ee~~~l~~~~~~ 221 (255)
+......++++|+++|+|++|+||+|++++|.+++||+|+++++||++|++++++.|++++++.|++....
T Consensus 240 ~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 240 GLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 45566789999999999999999999999999999999999999999999999999999999999988764
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=4.1e-47 Score=329.06 Aligned_cols=226 Identities=41% Similarity=0.627 Sum_probs=195.8
Q ss_pred CCcceecCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhcc--CCCCC
Q 025300 3 TVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRER 80 (255)
Q Consensus 3 ~m~~~~Lg~tg~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~ 80 (255)
.|++++||++|++||++|||+|.+.. ||...+++++.+++++|+++|+||||||++||+|.||.++|++|++ .+|++
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~ 89 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDK 89 (336)
T ss_pred cceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCc
Confidence 58899999999999999999985543 4554689999999999999999999999999999999999999998 47999
Q ss_pred EEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCCCCcccc----------------------
Q 025300 81 AELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVT---------------------- 138 (255)
Q Consensus 81 v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~~~~~~~---------------------- 138 (255)
|+|+||++... .+......+...+...++.||+|||++||||||+||+|+..|++++
T Consensus 90 vviaTK~~~~~-~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~s 168 (336)
T KOG1575|consen 90 VVIATKFGFDY-GGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWS 168 (336)
T ss_pred EEEEEEEeccC-CCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCC
Confidence 99999998765 2222455678889999999999999999999999999999999886
Q ss_pred -----------------------------------------------cCCC----CCCC---------------------
Q 025300 139 -----------------------------------------------HLPR----FQPG--------------------- 146 (255)
Q Consensus 139 -----------------------------------------------~~~~----~~~~--------------------- 146 (255)
+.|. +...
T Consensus 169 a~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~~~ 248 (336)
T KOG1575|consen 169 AEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGLSP 248 (336)
T ss_pred HHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccccccccccc
Confidence 1110 0000
Q ss_pred Cc---hhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhccCC
Q 025300 147 NL---EHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASADN 223 (255)
Q Consensus 147 ~~---~~~~~~~~~l~~ia~~~g~s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~ee~~~l~~~~~~~~ 223 (255)
.. .......+++.++|+++|+|++|+||+|+++++.+++||||+++++||+||++|+.+.|+++++..|+++.++..
T Consensus 249 ~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~ 328 (336)
T KOG1575|consen 249 QTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIIDKIL 328 (336)
T ss_pred ccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhcccc
Confidence 00 335567788999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCC
Q 025300 224 VKGDRYP 230 (255)
Q Consensus 224 ~~~~~~~ 230 (255)
..+.+|.
T Consensus 329 ~~~~~~~ 335 (336)
T KOG1575|consen 329 GFGPRSI 335 (336)
T ss_pred CcCCCCC
Confidence 8888775
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.4e-44 Score=319.90 Aligned_cols=216 Identities=29% Similarity=0.530 Sum_probs=176.3
Q ss_pred CCcceecCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCC--ChHHHHHHHHhccC---C
Q 025300 3 TVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGP--HTNEILLGKAFKGG---F 77 (255)
Q Consensus 3 ~m~~~~Lg~tg~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~--g~sE~~lG~al~~~---~ 77 (255)
.|++|+||++|++||+||||||+. ||...+.+++.++|++|++.|||+||||+.||+ |.||+.||++|+.. .
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~ 88 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAY 88 (346)
T ss_pred CcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCC
Confidence 699999999999999999999972 343335677899999999999999999999995 89999999999862 5
Q ss_pred CCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCCCCcccc-------------------
Q 025300 78 RERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVT------------------- 138 (255)
Q Consensus 78 R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~~~~~~~------------------- 138 (255)
|+++||+||++.....+......+++.+++++++||+|||+||||+|+||+|++..+++++
T Consensus 89 Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvS 168 (346)
T PRK09912 89 RDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGIS 168 (346)
T ss_pred CCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEec
Confidence 9999999998753111111234579999999999999999999999999999877665554
Q ss_pred -----------------------------------------------------cCC----CCCCC-------C-------
Q 025300 139 -----------------------------------------------------HLP----RFQPG-------N------- 147 (255)
Q Consensus 139 -----------------------------------------------------~~~----~~~~~-------~------- 147 (255)
+.| .+... .
T Consensus 169 n~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~~~~~~~~~~~~ 248 (346)
T PRK09912 169 SYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHREG 248 (346)
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCCCCCCccccccc
Confidence 000 00000 0
Q ss_pred -----------chhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhc-CCCCCHHHHHHH
Q 025300 148 -----------LEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEAL-SVKITPEEMAEL 215 (255)
Q Consensus 148 -----------~~~~~~~~~~l~~ia~~~g~s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~-~~~L~~ee~~~l 215 (255)
.+......+.++++|+++|+|++|+||+|++++|.|++||||+++++||++|++++ .++|++++++.|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~~~l 328 (346)
T PRK09912 249 NKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEELAQI 328 (346)
T ss_pred cchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 00112334678899999999999999999999999999999999999999999998 489999999999
Q ss_pred HHHhcc
Q 025300 216 EAIASA 221 (255)
Q Consensus 216 ~~~~~~ 221 (255)
+++.++
T Consensus 329 ~~~~~~ 334 (346)
T PRK09912 329 DQHIAD 334 (346)
T ss_pred HHhhCc
Confidence 998754
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=5.2e-44 Score=315.37 Aligned_cols=209 Identities=28% Similarity=0.424 Sum_probs=171.2
Q ss_pred ceecCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhcc--CCCCCEEE
Q 025300 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAEL 83 (255)
Q Consensus 6 ~~~Lg~tg~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~v~I 83 (255)
||+||++|++||+||||||++ +|...+.+++.++|+.|+++|||+||||++||.|.||++||++|+. .+|+++||
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 588999999999999999974 3333477889999999999999999999999999999999999985 26999999
Q ss_pred EeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCCCCcccc-------------------------
Q 025300 84 ATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVT------------------------- 138 (255)
Q Consensus 84 ~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~~~~~~~------------------------- 138 (255)
+||++..... ....+.+++.+++++++||+||||||||+|++|||++..+++++
T Consensus 78 aTK~~~~~~~-~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~ 156 (317)
T TIGR01293 78 TTKIFWGGKA-ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSME 156 (317)
T ss_pred EeeeccCCCC-CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHH
Confidence 9998642110 01134579999999999999999999999999999877665544
Q ss_pred ------------------------------------------------cCCC--------CCCC---C------------
Q 025300 139 ------------------------------------------------HLPR--------FQPG---N------------ 147 (255)
Q Consensus 139 ------------------------------------------------~~~~--------~~~~---~------------ 147 (255)
+.|. +... .
T Consensus 157 l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~~~~~~~~~~~~~~~~ 236 (317)
T TIGR01293 157 IMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGIPPYSRATLKGYQWLK 236 (317)
T ss_pred HHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCcccccccccchhh
Confidence 0000 0000 0
Q ss_pred -------chhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcCC--CCCHHHHHHHHHH
Q 025300 148 -------LEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSV--KITPEEMAELEAI 218 (255)
Q Consensus 148 -------~~~~~~~~~~l~~ia~~~g~s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~--~L~~ee~~~l~~~ 218 (255)
........+.++++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++++ +|++++++.|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 237 DKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred hhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 0011233467889999999999999999999999999999999999999999999997 9999999999975
No 5
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.5e-44 Score=307.54 Aligned_cols=201 Identities=31% Similarity=0.416 Sum_probs=170.1
Q ss_pred CCcceecCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhcc--CCCCC
Q 025300 3 TVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRER 80 (255)
Q Consensus 3 ~m~~~~Lg~tg~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~ 80 (255)
+|.+.+| ++|.+||.||||||+++. .+.+.+++.+|++.|+|+||||.+|| ||+.+|++|++ .+|++
T Consensus 2 ~~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 2 MKTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREE 70 (280)
T ss_pred CCceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHH
Confidence 3566788 688889999999999852 23399999999999999999999999 99999999998 58999
Q ss_pred EEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCC--CCcccc--------------------
Q 025300 81 AELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ--TPIEVT-------------------- 138 (255)
Q Consensus 81 v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~--~~~~~~-------------------- 138 (255)
+||+||+++. +.+++.+.+++++||+|||+||||||+||||.+. ..+.++
T Consensus 71 lFittKvw~~--------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 71 LFITTKVWPS--------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred eEEEeecCCc--------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 9999999987 5678999999999999999999999999999763 112232
Q ss_pred -----------------------cCCCCCCCCc-----------------hh-h-HHHHHHHHHHHHhcCCCHHHHHHHH
Q 025300 139 -----------------------HLPRFQPGNL-----------------EH-N-QKLFECVNEIAANKGCTPSQLALAW 176 (255)
Q Consensus 139 -----------------------~~~~~~~~~~-----------------~~-~-~~~~~~l~~ia~~~g~s~~qvaL~w 176 (255)
++|.+++..+ .+ . ....+.+.+||++||.|++|++|+|
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~g~~l~~~~~l~~Ia~k~g~t~AQv~L~W 222 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAKGGKLLDNPVLAEIAKKYGKTPAQVALRW 222 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCcccccccccChHHHHHHHHhCCCHHHHHHHH
Confidence 4455444321 11 1 2233688999999999999999999
Q ss_pred HHhCCCCeEEecCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhccCCC
Q 025300 177 VHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASADNV 224 (255)
Q Consensus 177 ~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~ee~~~l~~~~~~~~~ 224 (255)
+++++. ++||.+++++|++||++++++.||+|||+.|+++..+...
T Consensus 223 ~i~~gv--~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 223 HIQRGV--IVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred HHhCCc--EEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 999996 8999999999999999999999999999999999986543
No 6
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.4e-43 Score=312.32 Aligned_cols=210 Identities=31% Similarity=0.424 Sum_probs=173.0
Q ss_pred ceecCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhcc--CCCCCEEE
Q 025300 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAEL 83 (255)
Q Consensus 6 ~~~Lg~tg~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~v~I 83 (255)
||+||++|++||.||||||++|..|+. .+.+++.++|++|++.|||+||||+.||.|.||+.+|++|+. .+|+++||
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 689999999999999999999876764 377899999999999999999999999999999999999987 36999999
Q ss_pred EeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCC---CCcccc----------------------
Q 025300 84 ATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ---TPIEVT---------------------- 138 (255)
Q Consensus 84 ~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~---~~~~~~---------------------- 138 (255)
+||+++... ..+.+++.+++++++||++||+||||+|+||+|+.. .+++++
T Consensus 80 ~TK~~~~~~----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 155 (314)
T PLN02587 80 STKCGRYGE----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLP 155 (314)
T ss_pred EeccccCCC----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 999985321 124689999999999999999999999999999642 122222
Q ss_pred ------------------------------------------------cCC----CCCCC-------CchhhHHHHHHHH
Q 025300 139 ------------------------------------------------HLP----RFQPG-------NLEHNQKLFECVN 159 (255)
Q Consensus 139 ------------------------------------------------~~~----~~~~~-------~~~~~~~~~~~l~ 159 (255)
+.| .+... ..+......+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~l~ 235 (314)
T PLN02587 156 LAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPAPPELKSACAAAA 235 (314)
T ss_pred HHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhccccCCCCCCCCCCCCHHHHHHHHHHH
Confidence 000 00000 0011223345678
Q ss_pred HHHHhcCCCHHHHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcC----CCCCHHHHHHHHHHhc
Q 025300 160 EIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALS----VKITPEEMAELEAIAS 220 (255)
Q Consensus 160 ~ia~~~g~s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~----~~L~~ee~~~l~~~~~ 220 (255)
++|+++++|++|+||+|++++|.|++||+|+++++||++|+++++ .+|+++++++|+++.+
T Consensus 236 ~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 236 THCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILA 300 (314)
T ss_pred HHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhc
Confidence 899999999999999999999999999999999999999999976 3799999999999875
No 7
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.1e-43 Score=314.95 Aligned_cols=214 Identities=29% Similarity=0.394 Sum_probs=173.6
Q ss_pred CcceecCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcC-------CChHHHHHHHHhcc-
Q 025300 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYG-------PHTNEILLGKAFKG- 75 (255)
Q Consensus 4 m~~~~Lg~tg~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-------~g~sE~~lG~al~~- 75 (255)
|++++||++|++||+||||||++|. ..+.+++.++|+.|++.||||||||+.|| .|.||+.||++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999863 23678899999999999999999999998 48899999999985
Q ss_pred CCCCCEEEEeccCcCCCCCC----CCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCC-----------------CC
Q 025300 76 GFRERAELATKFGIGIVDGK----YGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-----------------TP 134 (255)
Q Consensus 76 ~~R~~v~I~tK~~~~~~~~~----~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~-----------------~~ 134 (255)
..|++++|+||++....... ...+.+++.+++++++||+|||+||||||+||||++. .+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 36999999999864211000 0124689999999999999999999999999999652 22
Q ss_pred cccc------------------------------------------------------------------------cCCC
Q 025300 135 IEVT------------------------------------------------------------------------HLPR 142 (255)
Q Consensus 135 ~~~~------------------------------------------------------------------------~~~~ 142 (255)
++++ +.|.
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 3332 0000
Q ss_pred ----CCCC--------C-----c--------hhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEEecCCCcHHHHH
Q 025300 143 ----FQPG--------N-----L--------EHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLN 197 (255)
Q Consensus 143 ----~~~~--------~-----~--------~~~~~~~~~l~~ia~~~g~s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~ 197 (255)
+.+. . + .......+.++++|+++|+|++|+||+|++++|.|+++|+|+++++||+
T Consensus 237 ~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~ 316 (346)
T PRK10625 237 AFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLK 316 (346)
T ss_pred cCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHH
Confidence 0000 0 0 1122345678899999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcc
Q 025300 198 ENIEALSVKITPEEMAELEAIASA 221 (255)
Q Consensus 198 enl~a~~~~L~~ee~~~l~~~~~~ 221 (255)
+|+++++++|++++++.|+++.+.
T Consensus 317 en~~a~~~~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 317 TNIESLHLTLSEEVLAEIEAVHQV 340 (346)
T ss_pred HHHhhccCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999854
No 8
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.6e-41 Score=293.13 Aligned_cols=213 Identities=31% Similarity=0.512 Sum_probs=168.5
Q ss_pred ceecCCCCcccCcceeccccccc--cCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEE
Q 025300 6 RMKLGSQGLEVSAQGLGCMGMSA--LYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAEL 83 (255)
Q Consensus 6 ~~~Lg~tg~~vs~lglGt~~~g~--~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I 83 (255)
++.|+ |++||+||||||++|. .||...+.+++.++|+.|++.|||+||||+.||+|.+|++||++|+. .|+++||
T Consensus 9 ~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~~i 85 (290)
T PRK10376 9 TFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPDDLTI 85 (290)
T ss_pred ceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCCeEEE
Confidence 45563 9999999999999975 36655567889999999999999999999999999999999999976 6999999
Q ss_pred EeccCcCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCC-----CCCcccc-------------------
Q 025300 84 ATKFGIGIVDG-KYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDT-----QTPIEVT------------------- 138 (255)
Q Consensus 84 ~tK~~~~~~~~-~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~-----~~~~~~~------------------- 138 (255)
+||++...... ....+.+++.+++++++||+|||+||||+|++|+++. ..+++++
T Consensus 86 ~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvS 165 (290)
T PRK10376 86 VTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLS 165 (290)
T ss_pred EeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEec
Confidence 99987643211 1224568999999999999999999999999888521 1122222
Q ss_pred ----------------------cCCCCCC-CC-----------------chhh-HHHHHHHHHHHHhcCCCHHHHHHHHH
Q 025300 139 ----------------------HLPRFQP-GN-----------------LEHN-QKLFECVNEIAANKGCTPSQLALAWV 177 (255)
Q Consensus 139 ----------------------~~~~~~~-~~-----------------~~~~-~~~~~~l~~ia~~~g~s~~qvaL~w~ 177 (255)
+++.... .. +... ....+.+.++|+++|+|++|+||+|+
T Consensus 166 n~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g~~~~~~~~l~~ia~~~~~t~aq~al~w~ 245 (290)
T PRK10376 166 NVTPTQVAEARKIAEIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALAWL 245 (290)
T ss_pred CCCHHHHHHHHhhCCeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCCCChhhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 1111100 00 0000 01246788999999999999999999
Q ss_pred HhCCCCeEEecCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhcc
Q 025300 178 HHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASA 221 (255)
Q Consensus 178 l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~ee~~~l~~~~~~ 221 (255)
++++.+.++|+|+++++|+++|++++++.|++++++.|+++.++
T Consensus 246 l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 246 LQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred HhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 99876678999999999999999999999999999999998754
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.3e-40 Score=289.15 Aligned_cols=206 Identities=40% Similarity=0.577 Sum_probs=171.5
Q ss_pred ceecCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCC-CCCEEEE
Q 025300 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGF-RERAELA 84 (255)
Q Consensus 6 ~~~Lg~tg~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~-R~~v~I~ 84 (255)
+++||++|++||+||||||+++..| .+.+++.++++.|++.|||+||||+.||.|.||+.+|++|+..+ |+++||+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999987654 36789999999999999999999999999999999999999864 9999999
Q ss_pred eccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCCCC-cccc-------------------------
Q 025300 85 TKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP-IEVT------------------------- 138 (255)
Q Consensus 85 tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~~~-~~~~------------------------- 138 (255)
||+++.... ..+.+++.+++++++||++||+||||+|+||+|+.... ..+.
T Consensus 78 tK~~~~~~~---~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~ 154 (285)
T cd06660 78 TKVGPRPGD---GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQ 154 (285)
T ss_pred eeecCCCCC---CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHH
Confidence 999865321 13468999999999999999999999999999987544 2222
Q ss_pred ------------------cCCCCCCCC--c-------------------------------hhhHHHHHHHHHHHHhcCC
Q 025300 139 ------------------HLPRFQPGN--L-------------------------------EHNQKLFECVNEIAANKGC 167 (255)
Q Consensus 139 ------------------~~~~~~~~~--~-------------------------------~~~~~~~~~l~~ia~~~g~ 167 (255)
+++..+... + .........+..+++++++
T Consensus 155 l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (285)
T cd06660 155 LEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALKEIAEKHGV 234 (285)
T ss_pred HHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCChhhHHHHHHHHHHHhCC
Confidence 111111100 0 0000123567899999999
Q ss_pred CHHHHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcCCCCCHHHHHHHHH
Q 025300 168 TPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEA 217 (255)
Q Consensus 168 s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~ee~~~l~~ 217 (255)
+++|+||+|++++|.+.++|+|+++++||++|+++..++|++++++.|++
T Consensus 235 s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 235 TPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred CHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999986
No 10
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.8e-41 Score=289.02 Aligned_cols=195 Identities=29% Similarity=0.445 Sum_probs=168.1
Q ss_pred ceecCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhcc------CCCC
Q 025300 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG------GFRE 79 (255)
Q Consensus 6 ~~~Lg~tg~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~------~~R~ 79 (255)
+.+| ++|.+||.||||||+. ++.++.++++.|++.|+||||||..|+ ||+.+|++|++ .+|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 6899 8999999999999984 678899999999999999999999999 89999999995 3899
Q ss_pred CEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCCCC---cc-------------cc-----
Q 025300 80 RAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP---IE-------------VT----- 138 (255)
Q Consensus 80 ~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~~~---~~-------------~~----- 138 (255)
++||+||+++. .+.++.++.++++||++||+||+|||+||||-...+ .. ++
T Consensus 74 diFiTSKlw~~--------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE 145 (300)
T KOG1577|consen 74 DIFITSKLWPT--------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAME 145 (300)
T ss_pred hheeeeccCcc--------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHH
Confidence 99999999986 467899999999999999999999999999965411 10 11
Q ss_pred --------------------------------------cCCCCCCCCch----------------------hhHHHHHHH
Q 025300 139 --------------------------------------HLPRFQPGNLE----------------------HNQKLFECV 158 (255)
Q Consensus 139 --------------------------------------~~~~~~~~~~~----------------------~~~~~~~~l 158 (255)
++|.|++..+. ......+.+
T Consensus 146 ~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~~~~ll~~~~l 225 (300)
T KOG1577|consen 146 KLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGRGSDLLEDPVL 225 (300)
T ss_pred HHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCCccccccCHHH
Confidence 55555543320 012234788
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhccC
Q 025300 159 NEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASAD 222 (255)
Q Consensus 159 ~~ia~~~g~s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~ee~~~l~~~~~~~ 222 (255)
.++|++|+.|++||+|||.++++. +|||.+++++||+||++++++.||+|||+.|+.+....
T Consensus 226 ~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~ 287 (300)
T KOG1577|consen 226 KEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNE 287 (300)
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhccccCCHHHHHHHhhccccc
Confidence 999999999999999999999998 89999999999999999999999999999999887654
No 11
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2.4e-39 Score=280.22 Aligned_cols=198 Identities=28% Similarity=0.403 Sum_probs=162.4
Q ss_pred CCCCcceecCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccC--CC
Q 025300 1 MATVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGG--FR 78 (255)
Q Consensus 1 ~~~m~~~~Lg~tg~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~--~R 78 (255)
|++.++..| ++|+.||+||||||++ +.+++.++|++|++.|||+||||+.|| +|+.+|++|+.. +|
T Consensus 1 ~~~~~~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R 68 (275)
T PRK11565 1 MANPTVIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAR 68 (275)
T ss_pred CCCCceEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCH
Confidence 555667788 8999999999999986 467899999999999999999999999 799999999863 58
Q ss_pred CCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCCCC-cccc-------------------
Q 025300 79 ERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP-IEVT------------------- 138 (255)
Q Consensus 79 ~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~~~-~~~~------------------- 138 (255)
++++|+||++.. +++.+++++++||++|++||||+|+||+|++..+ ..++
T Consensus 69 ~~~~i~tK~~~~----------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 138 (275)
T PRK11565 69 EELFITTKLWND----------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVC 138 (275)
T ss_pred HHEEEEEEecCc----------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeec
Confidence 999999998632 4678999999999999999999999999976432 2222
Q ss_pred ------------------------cCCCCCCCC-----------------chhh---HHHHHHHHHHHHhcCCCHHHHHH
Q 025300 139 ------------------------HLPRFQPGN-----------------LEHN---QKLFECVNEIAANKGCTPSQLAL 174 (255)
Q Consensus 139 ------------------------~~~~~~~~~-----------------~~~~---~~~~~~l~~ia~~~g~s~~qvaL 174 (255)
+++.+.... +... ....+.|.++|+++|+|++|+||
T Consensus 139 n~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~G~~~~~~~~~l~~ia~~~g~s~aq~aL 218 (275)
T PRK11565 139 NFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVI 218 (275)
T ss_pred cCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCCCCcccccCHHHHHHHHHhCCCHHHHHH
Confidence 111111000 0000 01136789999999999999999
Q ss_pred HHHHhCCCCeEEecCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhccC
Q 025300 175 AWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASAD 222 (255)
Q Consensus 175 ~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~ee~~~l~~~~~~~ 222 (255)
+|+++++. ++|||+++++|+++|+++++++|++++++.|+++....
T Consensus 219 ~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 219 RWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred HHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 99999986 68999999999999999999999999999999997643
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.8e-39 Score=281.75 Aligned_cols=196 Identities=34% Similarity=0.478 Sum_probs=159.5
Q ss_pred cceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhcc--CCCCCEEEEeccCcCCCCCC
Q 025300 18 AQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAELATKFGIGIVDGK 95 (255)
Q Consensus 18 ~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~v~I~tK~~~~~~~~~ 95 (255)
+||||||+++.. ..+.+++.++|+.|++.|||+||||+.||+|.||+.||++|+. .+|++++|+||+.. ...
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~---~~~ 74 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYG---DGK 74 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEES---SSS
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccc---ccc
Confidence 589999998643 4589999999999999999999999999999999999999998 69999999999911 112
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCCCC-cccc------------------------------------
Q 025300 96 YGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP-IEVT------------------------------------ 138 (255)
Q Consensus 96 ~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~~~-~~~~------------------------------------ 138 (255)
.....+++.+++++++||++||+||||+|+||+|+.... ..+.
T Consensus 75 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 154 (283)
T PF00248_consen 75 PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIP 154 (283)
T ss_dssp TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-
T ss_pred ccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 234678999999999999999999999999999998776 4443
Q ss_pred -------cCCC------------------------CCCCCch----------------hhHHHHHHHHHHHHhcCCCHHH
Q 025300 139 -------HLPR------------------------FQPGNLE----------------HNQKLFECVNEIAANKGCTPSQ 171 (255)
Q Consensus 139 -------~~~~------------------------~~~~~~~----------------~~~~~~~~l~~ia~~~g~s~~q 171 (255)
+++. +.+..+. ......+.+.++++++|++++|
T Consensus 155 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q 234 (283)
T PF00248_consen 155 PDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDAQELADALRELAEEHGVSPAQ 234 (283)
T ss_dssp ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTHGGGHHHHHHHHHHHTSSHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccCccccccccCCCcccccccchhhhhhhhhhhhhhhcccccch
Confidence 0000 0000000 0125668899999999999999
Q ss_pred HHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHh
Q 025300 172 LALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIA 219 (255)
Q Consensus 172 vaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~ee~~~l~~~~ 219 (255)
+||+|+++++.+.+||+|+++++|+++|+++++++||+++++.|+++.
T Consensus 235 ~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 235 LALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999875
No 13
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=8.1e-39 Score=275.88 Aligned_cols=187 Identities=27% Similarity=0.387 Sum_probs=153.0
Q ss_pred cccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhcc--CCCCCEEEEeccCcCC
Q 025300 14 LEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAELATKFGIGI 91 (255)
Q Consensus 14 ~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~v~I~tK~~~~~ 91 (255)
.+||+||||||++ +.+++.+++++|++.|||+||||+.|| +|+.||++|+. .+|+++||+||+++.
T Consensus 1 ~~vs~lglGt~~~--------~~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRL--------KDQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEcccc--------ChHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 3689999999987 346799999999999999999999999 79999999985 369999999998643
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCC--CCcccc-------------------------------
Q 025300 92 VDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ--TPIEVT------------------------------- 138 (255)
Q Consensus 92 ~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~--~~~~~~------------------------------- 138 (255)
..+++.+++++++||+|||+||||+|+||+|++. .+.+++
T Consensus 69 -------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~ 141 (267)
T PRK11172 69 -------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIA 141 (267)
T ss_pred -------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHH
Confidence 3578999999999999999999999999999763 233332
Q ss_pred -------------cCCCCCCCCc-----------------hhh-HHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEEe
Q 025300 139 -------------HLPRFQPGNL-----------------EHN-QKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPI 187 (255)
Q Consensus 139 -------------~~~~~~~~~~-----------------~~~-~~~~~~l~~ia~~~g~s~~qvaL~w~l~~~~v~~vi 187 (255)
+++..+...+ ... ....+.+.++|+++|+|++|+||+|+++++. +||
T Consensus 142 ~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~G~~~~~~~l~~~a~~~~~s~aqval~w~l~~~~--~~i 219 (267)
T PRK11172 142 AVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAYGKVLKDPVIARIAAKHNATPAQVILAWAMQLGY--SVI 219 (267)
T ss_pred hcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCCCcccCCHHHHHHHHHhCCCHHHHHHHHHHhCCC--Eee
Confidence 1111110000 000 0012568899999999999999999999985 699
Q ss_pred cCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhcc
Q 025300 188 PGTTKIANLNENIEALSVKITPEEMAELEAIASA 221 (255)
Q Consensus 188 ~G~~~~~~l~enl~a~~~~L~~ee~~~l~~~~~~ 221 (255)
+|+++++|+++|+++++++|++++++.|+++.+.
T Consensus 220 ~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 220 PSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred cCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 9999999999999999999999999999999753
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=4e-39 Score=264.57 Aligned_cols=215 Identities=29% Similarity=0.449 Sum_probs=186.8
Q ss_pred CcceecCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhcc--CCCCCE
Q 025300 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERA 81 (255)
Q Consensus 4 m~~~~Lg~tg~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~v 81 (255)
|++.+||+.|+++|++.+|+|++.. |+- +.+++...++.|++.||++||.|+.||++.+|+++|++|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~~--~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WNM--SARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-ccC--CHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7889999999999999999999964 443 56889999999999999999999999999999999999986 479999
Q ss_pred EEEeccCcCCCCC----CCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCCCCcccc-------------------
Q 025300 82 ELATKFGIGIVDG----KYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVT------------------- 138 (255)
Q Consensus 82 ~I~tK~~~~~~~~----~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~~~~~~~------------------- 138 (255)
.|+||++...... ...++.+.+.|.+++|+||++|+|||+|+++||+||+-.+.+++
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999865432 23468899999999999999999999999999999998877765
Q ss_pred --------------------------------------------------cCC-----CCCCCCchhhHHHHHHHHHHHH
Q 025300 139 --------------------------------------------------HLP-----RFQPGNLEHNQKLFECVNEIAA 163 (255)
Q Consensus 139 --------------------------------------------------~~~-----~~~~~~~~~~~~~~~~l~~ia~ 163 (255)
++| .|.+ ..+.......|..+|.
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g--~~~~q~l~~~l~~ia~ 235 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG--DDKFQRLRKVLDRIAE 235 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC--CcchHHHHHHHHHHHH
Confidence 111 1221 2334456688999999
Q ss_pred hcC-CCHHHHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhccCC
Q 025300 164 NKG-CTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASADN 223 (255)
Q Consensus 164 ~~g-~s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~ee~~~l~~~~~~~~ 223 (255)
++| .|.++|+++|++.+|.-..||+|+.+++++++.++++++.|+.++|-+|..+..+..
T Consensus 236 e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G~~ 296 (298)
T COG4989 236 EYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIGND 296 (298)
T ss_pred HhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhccCC
Confidence 999 799999999999999999999999999999999999999999999999998875533
No 15
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.9e-38 Score=260.06 Aligned_cols=205 Identities=26% Similarity=0.351 Sum_probs=173.1
Q ss_pred CCcceecCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEE
Q 025300 3 TVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAE 82 (255)
Q Consensus 3 ~m~~~~Lg~tg~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~ 82 (255)
+|.+|.||.||++||+||||...++..||.. +.++....+.+|+.+|||+||||+.||+++||+.+|.++++.||+..|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhee
Confidence 6899999999999999999999999989874 667777667779999999999999999999999999999999999999
Q ss_pred EEeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCCCCc----ccc--------------------
Q 025300 83 LATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPI----EVT-------------------- 138 (255)
Q Consensus 83 I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~~~~----~~~-------------------- 138 (255)
|+||++....+....++++++.++.++++||+||++||+|+++||+.+..... .|+
T Consensus 100 IaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitg 179 (342)
T KOG1576|consen 100 IATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITG 179 (342)
T ss_pred eeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecc
Confidence 99999976544344578999999999999999999999999999998754221 122
Q ss_pred -------------------------------------------------------------cCCCCCCCCchhhHHHHHH
Q 025300 139 -------------------------------------------------------------HLPRFQPGNLEHNQKLFEC 157 (255)
Q Consensus 139 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 157 (255)
..|.|.+.. +.......+
T Consensus 180 ypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPaS-~Elk~~a~~ 258 (342)
T KOG1576|consen 180 YPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPAS-DELKEAAKA 258 (342)
T ss_pred cchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCCC-HHHHHHHHH
Confidence 111222211 223344456
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcCCCCCH
Q 025300 158 VNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITP 209 (255)
Q Consensus 158 l~~ia~~~g~s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~ 209 (255)
-.++|++.|+..+.+|+.|.++.+.++++++|+++.++++.|+++....||.
T Consensus 259 aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 259 AAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred HHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 6788999999999999999999999999999999999999999988778887
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=274.92 Aligned_cols=210 Identities=28% Similarity=0.381 Sum_probs=173.2
Q ss_pred CcceecCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEE
Q 025300 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAEL 83 (255)
Q Consensus 4 m~~~~Lg~tg~~vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I 83 (255)
|.||++|+||.++|.+|||+|++...|+...+.+.+.++|++|++.||||||||..|..|.||..+|+||++..|++|++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999877777678899999999999999999999999988889999999999988999999
Q ss_pred EeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCCCCcccc-------------------------
Q 025300 84 ATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVT------------------------- 138 (255)
Q Consensus 84 ~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~~~~~~~------------------------- 138 (255)
+||+.... --+.+.+++-++++|++|++||+|+|+||..... .++..
T Consensus 81 aTKlp~~~-------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e-~~~k~~~~g~~df~~kak~eGkIr~~GFSf 152 (391)
T COG1453 81 ATKLPSWP-------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE-TWEKIERLGVFDFLEKAKAEGKIRNAGFSF 152 (391)
T ss_pred EeecCCcc-------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHH-HHHHHHccChHHHHHHHHhcCcEEEeeecC
Confidence 99998542 3478999999999999999999999999998762 22211
Q ss_pred ------------cCC---------CCCCCC----------------------chhhHHH---HHHHHHHHHhcC--CCHH
Q 025300 139 ------------HLP---------RFQPGN----------------------LEHNQKL---FECVNEIAANKG--CTPS 170 (255)
Q Consensus 139 ------------~~~---------~~~~~~----------------------~~~~~~~---~~~l~~ia~~~g--~s~~ 170 (255)
..+ ++...+ +.+...+ -.++.+++++.+ .||+
T Consensus 153 Hgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP~~~~~l~~~~~~~~sP~ 232 (391)
T COG1453 153 HGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVPEKLEELCRPASPKRSPA 232 (391)
T ss_pred CCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCCCHHHHHHHHhcCCCCCcH
Confidence 000 000000 0111111 156778888765 5799
Q ss_pred HHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcCC---CCCHHHHHHHHHHhcc
Q 025300 171 QLALAWVHHQGDDVCPIPGTTKIANLNENIEALSV---KITPEEMAELEAIASA 221 (255)
Q Consensus 171 qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~---~L~~ee~~~l~~~~~~ 221 (255)
..|+||++++|.|+++++|+++++|++||++.++. +||++|+..|.++.+.
T Consensus 233 ~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~ 286 (391)
T COG1453 233 EWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEI 286 (391)
T ss_pred HHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997764 3999999988888764
No 17
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=6.4e-37 Score=266.97 Aligned_cols=191 Identities=23% Similarity=0.277 Sum_probs=151.9
Q ss_pred CcccCcceecccccccc-------CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEEEe
Q 025300 13 GLEVSAQGLGCMGMSAL-------YGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELAT 85 (255)
Q Consensus 13 g~~vs~lglGt~~~g~~-------~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I~t 85 (255)
+++||+||||||++|.. ||. ++.+++.++|+.|++.||||||||+.||. ||+.+|++|+...+.+++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR--AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh--HHHHHhhhhccCCceEeeccc
Confidence 57899999999999853 444 48899999999999999999999999975 999999999753345788999
Q ss_pred ccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCC-CCc-ccc-------------------------
Q 025300 86 KFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-TPI-EVT------------------------- 138 (255)
Q Consensus 86 K~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~-~~~-~~~------------------------- 138 (255)
|.. +.+++.+++++++||+|||+||||+|+||+|++. .+. +++
T Consensus 79 k~~----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~ 148 (292)
T PRK14863 79 VRA----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDD 148 (292)
T ss_pred ccc----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHH
Confidence 842 2368999999999999999999999999999753 222 221
Q ss_pred ----------------cCCCCCCC---C---------------------------------chhhHHHHHHHHHHHHhcC
Q 025300 139 ----------------HLPRFQPG---N---------------------------------LEHNQKLFECVNEIAANKG 166 (255)
Q Consensus 139 ----------------~~~~~~~~---~---------------------------------~~~~~~~~~~l~~ia~~~g 166 (255)
+++..+.. . +......+..+.+++.+++
T Consensus 149 ~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (292)
T PRK14863 149 PVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDRVPAQLKGASGRLSRVRRMIAEGR 228 (292)
T ss_pred HHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcccCccchhhhhHHHHHHHHHHHHcC
Confidence 11111100 0 0001123455667888889
Q ss_pred CCHHHHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcCCCCCHHHHHHHH
Q 025300 167 CTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELE 216 (255)
Q Consensus 167 ~s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~ee~~~l~ 216 (255)
++++|+||+|++++|.|+++|+|+++++|+++|+++.+.+++++.+++|.
T Consensus 229 ~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 229 SDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhcc
Confidence 99999999999999999999999999999999999999999998877665
No 18
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.26 E-value=3.5 Score=37.60 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHc
Q 025300 37 PDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRL 116 (255)
Q Consensus 37 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L 116 (255)
.....++++|++.|++++|||...-. ...+.+.. .+..+.+..-+|..+ ..+--.+...+++--+
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~---~~~~~~~a---~~Agit~v~~~G~dP-------Gi~nv~a~~a~~~~~~-- 143 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP---PWKLDEEA---KKAGITAVLGCGFDP-------GITNVLAAYAAKELFD-- 143 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch---hhhhhHHH---HHcCeEEEcccCcCc-------chHHHHHHHHHHHhhc--
Confidence 44568999999999999999987763 22222222 445677777777653 2333333333333332
Q ss_pred CCCceeEEeeccCCCC
Q 025300 117 DVDCIDLYYQHRIDTQ 132 (255)
Q Consensus 117 ~~d~iDl~~iH~p~~~ 132 (255)
.+++||+|..+-|++.
T Consensus 144 ~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 EIESIDIYVGGLGEHG 159 (389)
T ss_pred cccEEEEEEecCCCCC
Confidence 5789999999999765
No 19
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=60.72 E-value=64 Score=26.78 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCcC-CChHH---HHHHHHhccCCCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHH
Q 025300 35 PEPDMIALIRHAINSGITFLDTSDIYG-PHTNE---ILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~g~sE---~~lG~al~~~~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~ 110 (255)
++++...+.+.+.+.|..|+=|+.-|+ .|-+. +.+.+.++. + +-.|..-. -.+.+...+-++
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~----~--v~IKaaGG--------irt~~~a~~~i~ 195 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD----T--IGVKASGG--------VRTAEDAIAMIE 195 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc----C--CeEEEeCC--------CCCHHHHHHHHH
Confidence 567788999999999999999998887 33222 445555432 2 23333211 126788899999
Q ss_pred HHHHHcCCCc
Q 025300 111 ASLKRLDVDC 120 (255)
Q Consensus 111 ~SL~~L~~d~ 120 (255)
.--.|+|++.
T Consensus 196 aGa~riGts~ 205 (211)
T TIGR00126 196 AGASRIGASA 205 (211)
T ss_pred HhhHHhCcch
Confidence 9999999864
No 20
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=60.29 E-value=38 Score=26.75 Aligned_cols=72 Identities=13% Similarity=0.110 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEEEec-cCcCCCCCCCCCCCCHHHHHHHHHHHH
Q 025300 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATK-FGIGIVDGKYGYHGDPAYVRAACEASL 113 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I~tK-~~~~~~~~~~~~~~~~~~i~~~v~~SL 113 (255)
+++...-++++|-+.||.+|=.|..||. +-..+-+.+.. . =+++++|- .+... .+...+...+++-|
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~e--------~g~~e~~~E~~~~L 79 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFEE--------KGTQEMDEEVRKEL 79 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeeccccc--------CCceecCHHHHHHH
Confidence 3444566788888999999999999995 54445455443 1 23555554 34331 23345677788889
Q ss_pred HHcCC
Q 025300 114 KRLDV 118 (255)
Q Consensus 114 ~~L~~ 118 (255)
+..|.
T Consensus 80 ~erGa 84 (186)
T COG1751 80 KERGA 84 (186)
T ss_pred HHcCc
Confidence 99985
No 21
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=56.62 E-value=1.3e+02 Score=27.41 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcC-CC--eEeCcCCcCCChHHHHHHHHhccC-CC-CCE--EEEeccCcCCCCCCCCCCCCHHHHHHHHH
Q 025300 38 DMIALIRHAINSG-IT--FLDTSDIYGPHTNEILLGKAFKGG-FR-ERA--ELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (255)
Q Consensus 38 ~~~~~l~~Al~~G-i~--~~DTA~~Yg~g~sE~~lG~al~~~-~R-~~v--~I~tK~~~~~~~~~~~~~~~~~~i~~~v~ 110 (255)
....+++++-+.+ +. .+=|+.+| +.+++..+|... -+ .++ -|..+.... .-....+...++
T Consensus 18 Kmapli~~~~~~~~~~~~vi~TGQH~----d~em~~~~le~~~i~~pdy~L~i~~~~~tl--------~~~t~~~i~~~~ 85 (383)
T COG0381 18 KMAPLVKALEKDPDFELIVIHTGQHR----DYEMLDQVLELFGIRKPDYDLNIMKPGQTL--------GEITGNIIEGLS 85 (383)
T ss_pred HHhHHHHHHHhCCCCceEEEEecccc----cHHHHHHHHHHhCCCCCCcchhccccCCCH--------HHHHHHHHHHHH
Confidence 3456777776665 54 67899999 567888888762 22 232 233222211 112345667777
Q ss_pred HHHHHcCCCceeEEeeccCCCCCCcccc---------------cCCCCCCCCchhhHHHHHHHHHHHHhcCCCHHHHHHH
Q 025300 111 ASLKRLDVDCIDLYYQHRIDTQTPIEVT---------------HLPRFQPGNLEHNQKLFECVNEIAANKGCTPSQLALA 175 (255)
Q Consensus 111 ~SL~~L~~d~iDl~~iH~p~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qvaL~ 175 (255)
..|+..+ +|++++|.- ..+.+... ...-+... ++ .+..+.+-.....+...|.+.|-+
T Consensus 86 ~vl~~~k---PD~VlVhGD-T~t~lA~alaa~~~~IpV~HvEAGlRt~~~~-~P--EE~NR~l~~~~S~~hfapte~ar~ 158 (383)
T COG0381 86 KVLEEEK---PDLVLVHGD-TNTTLAGALAAFYLKIPVGHVEAGLRTGDLY-FP--EEINRRLTSHLSDLHFAPTEIARK 158 (383)
T ss_pred HHHHhhC---CCEEEEeCC-cchHHHHHHHHHHhCCceEEEecccccCCCC-Cc--HHHHHHHHHHhhhhhcCChHHHHH
Confidence 7777665 789999994 33333211 11111111 11 233455555566678899999999
Q ss_pred HHHhCCCC--eEEecCCCcHHHHHHHH
Q 025300 176 WVHHQGDD--VCPIPGTTKIANLNENI 200 (255)
Q Consensus 176 w~l~~~~v--~~vi~G~~~~~~l~enl 200 (255)
.+++-+.- .+.++|.+-.+-+..+.
T Consensus 159 nLl~EG~~~~~IfvtGnt~iDal~~~~ 185 (383)
T COG0381 159 NLLREGVPEKRIFVTGNTVIDALLNTR 185 (383)
T ss_pred HHHHcCCCccceEEeCChHHHHHHHHH
Confidence 99986543 47788988777666653
No 22
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=54.85 E-value=61 Score=27.11 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCcC-CChHHHHHHHHhccCCCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHH
Q 025300 35 PEPDMIALIRHAINSGITFLDTSDIYG-PHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASL 113 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~g~sE~~lG~al~~~~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL 113 (255)
++++..++.+.+.+.|..||=|+.-|+ .|.+.+.+....+. -+.++-|--=.+. .+.+...+-++.--
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~-~~~~~~IKasGGI----------rt~~~a~~~i~aGA 202 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET-VGPRVGVKASGGI----------RTLEDALAMIEAGA 202 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-hCCCceEEeeCCc----------CCHHHHHHHHHcCc
Confidence 678889999999999999999999996 45666666555443 2223222222222 26777777777777
Q ss_pred HHcCCCc
Q 025300 114 KRLDVDC 120 (255)
Q Consensus 114 ~~L~~d~ 120 (255)
.|+||.+
T Consensus 203 ~riGtS~ 209 (221)
T PRK00507 203 TRLGTSA 209 (221)
T ss_pred ceEccCc
Confidence 7777653
No 23
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=54.37 E-value=1.4e+02 Score=25.64 Aligned_cols=78 Identities=15% Similarity=0.081 Sum_probs=51.5
Q ss_pred CHH-HHHHHHHHHHHcCCCeEeCcCCcCC-ChHH---HHHHHHhccC-CCCCEEEEeccCcCCCCCCCCCCCCHHHHHHH
Q 025300 35 PEP-DMIALIRHAINSGITFLDTSDIYGP-HTNE---ILLGKAFKGG-FRERAELATKFGIGIVDGKYGYHGDPAYVRAA 108 (255)
Q Consensus 35 ~~~-~~~~~l~~Al~~Gi~~~DTA~~Yg~-g~sE---~~lG~al~~~-~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~ 108 (255)
+++ +..++.+.|.++|..|+=|+.-|+. |-+. +++-+.+++. ...+ +.-|..-. -.+.+....-
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGG--------Irt~~~A~~~ 213 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGG--------VRTAEDAAQY 213 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCC--------CCCHHHHHHH
Confidence 445 5889999999999999999999974 4333 3444444321 0122 33343211 2367888888
Q ss_pred HHHHHHHcCCCcee
Q 025300 109 CEASLKRLDVDCID 122 (255)
Q Consensus 109 v~~SL~~L~~d~iD 122 (255)
++.--+.||.++++
T Consensus 214 i~ag~~~lg~~~~~ 227 (257)
T PRK05283 214 LALADEILGADWAD 227 (257)
T ss_pred HHHHHHHhChhhcC
Confidence 99999999987763
No 24
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=51.97 E-value=21 Score=23.43 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Q 025300 157 CVNEIAANKGCTPSQLALAWVHH 179 (255)
Q Consensus 157 ~l~~ia~~~g~s~~qvaL~w~l~ 179 (255)
.+.+||+++|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 35689999999999999999853
No 25
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=50.82 E-value=31 Score=21.16 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcCC
Q 025300 158 VNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSV 205 (255)
Q Consensus 158 l~~ia~~~g~s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~ 205 (255)
|++||+..|+|.+-|. .+++.+. -+...+.+++.+.++.++.
T Consensus 2 i~dIA~~agvS~~TVS--r~ln~~~----~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVS--RVLNGPP----RVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHH--HHHTTCS----SSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHH--HHHhCCC----CCCHHHHHHHHHHHHHHCC
Confidence 6889999999999874 4466542 4556667777777666554
No 26
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=49.45 E-value=24 Score=29.97 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=47.3
Q ss_pred CCCcccCcceeccccccccCCCCC--CHHHHHHHH----HHHHHcCCCeEeCc--CCcCCChHHHHHHHHhcc-------
Q 025300 11 SQGLEVSAQGLGCMGMSALYGPPK--PEPDMIALI----RHAINSGITFLDTS--DIYGPHTNEILLGKAFKG------- 75 (255)
Q Consensus 11 ~tg~~vs~lglGt~~~g~~~g~~~--~~~~~~~~l----~~Al~~Gi~~~DTA--~~Yg~g~sE~~lG~al~~------- 75 (255)
.+|+.+|-+||.+-+=- .+|+.. ..+++.+++ ..|.+.|||.|--| +.|-.-.+|+-..+++++
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 57999999999875421 134431 244555554 45568899999987 455433455555555544
Q ss_pred CCCCCEEEEeccC
Q 025300 76 GFRERAELATKFG 88 (255)
Q Consensus 76 ~~R~~v~I~tK~~ 88 (255)
..+-+|.++--+.
T Consensus 144 A~~aqV~lAvEiM 156 (287)
T COG3623 144 AARAQVMLAVEIM 156 (287)
T ss_pred HHhhccEEEeeec
Confidence 1566777776654
No 27
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=45.50 E-value=90 Score=26.22 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCcCCC
Q 025300 35 PEPDMIALIRHAINSGITFLDTSDIYGPH 63 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g 63 (255)
+.++...+++.|.+.|++-+=..++|-.|
T Consensus 18 s~eesl~ml~~A~~qGvt~iVaTsHh~~g 46 (254)
T COG4464 18 SLEESLAMLREAVRQGVTKIVATSHHLHG 46 (254)
T ss_pred cHHHHHHHHHHHHHcCceEEeecccccCC
Confidence 78999999999999999977766666554
No 28
>TIGR03277 methan_mark_9 putative methanogenesis marker domain 9. A gene for a protein that contains a copy of this domain, to date, is found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. A 69-amino acid core region of this 110-amino acid domain contains eight invariant Cys residues, including two copies of a motif [WFY]CCxxKPC. These motifs could be consistent with predicted metal-binding transcription factor as was suggested for the COG4008 family. Some members of this family have an additional N-terminal domain of about 250 amino acids from the nifR3 family of predicted TIM-barrel proteins.
Probab=42.78 E-value=42 Score=24.57 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHhccCCCCCCCCCCCCCCcccccccc---cCCCCC
Q 025300 205 VKITPEEMAELEAIASADNVKGDRYPSSSGTYKSSTYKT---ADTPPL 249 (255)
Q Consensus 205 ~~L~~ee~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 249 (255)
..+|++|+..|..-..+...-+..-+..+ ++.+|++ .+||=.
T Consensus 37 ~~~sp~ef~~~K~ef~~~T~L~~G~~TCF---GSLawCCkp~KPCplr 81 (109)
T TIGR03277 37 LGLSPQEFVRIKEEFAKGTPLGQGENTCF---GSLVWCCKITKPCPLR 81 (109)
T ss_pred cCCCHHHHHHHHHHHhccCcccCCCCccc---cceeeecCCCCCCcCc
Confidence 47999999999877766555555555554 6899988 488743
No 29
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=41.95 E-value=2e+02 Score=24.27 Aligned_cols=83 Identities=19% Similarity=0.158 Sum_probs=54.4
Q ss_pred cCcceeccccccccCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCC-ChHH---HHHHHHhccCCCCCEEEEeccCcCC
Q 025300 16 VSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGP-HTNE---ILLGKAFKGGFRERAELATKFGIGI 91 (255)
Q Consensus 16 vs~lglGt~~~g~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~-g~sE---~~lG~al~~~~R~~v~I~tK~~~~~ 91 (255)
+-++.+-|.-+ ++++..++.+.+.++|..|+=|+.-+.. |-+. .++-+.+ ..++= -|..-.
T Consensus 127 ~lKVIlEt~~L--------t~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv~lM~~~v----g~~vg--vKaSGG- 191 (228)
T COG0274 127 VLKVILETGLL--------TDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDVKLMKETV----GGRVG--VKASGG- 191 (228)
T ss_pred eEEEEEecccc--------CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh----ccCce--eeccCC-
Confidence 34566666555 6777899999999999999999995553 4333 3333333 11221 122111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCc
Q 025300 92 VDGKYGYHGDPAYVRAACEASLKRLDVDC 120 (255)
Q Consensus 92 ~~~~~~~~~~~~~i~~~v~~SL~~L~~d~ 120 (255)
-.+.+....-++.-..|+|+..
T Consensus 192 -------Irt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 192 -------IRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred -------cCCHHHHHHHHHHhHHHhcccc
Confidence 2378889999999999999853
No 30
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=40.95 E-value=2e+02 Score=23.43 Aligned_cols=70 Identities=26% Similarity=0.344 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCcCC-C---hHHHHHHHHhccCCCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHH
Q 025300 35 PEPDMIALIRHAINSGITFLDTSDIYGP-H---TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~-g---~sE~~lG~al~~~~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~ 110 (255)
++++...+.+.|.++|..|+=|+.-|.. | ..-+.+.+.++ .. +-.|..-. .. +.+.+.+-++
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~--v~ik~aGG-------ik-t~~~~l~~~~ 194 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GR--VGVKAAGG-------IR-TLEDALAMIE 194 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CC--ceEEEeCC-------CC-CHHHHHHHHH
Confidence 5678999999999999999999988862 2 13356666664 12 23333211 11 5677777777
Q ss_pred HHHHHcCC
Q 025300 111 ASLKRLDV 118 (255)
Q Consensus 111 ~SL~~L~~ 118 (255)
.-..|+|+
T Consensus 195 ~g~~riG~ 202 (203)
T cd00959 195 AGATRIGT 202 (203)
T ss_pred hChhhccC
Confidence 77777776
No 31
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=39.76 E-value=42 Score=19.83 Aligned_cols=38 Identities=13% Similarity=0.041 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCC---CcccccccccCC
Q 025300 209 PEEMAELEAIASADNVKGDRYPSSSG---TYKSSTYKTADT 246 (255)
Q Consensus 209 ~ee~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 246 (255)
++|.+.|-++..............-. .-+++.|.++.|
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~C 42 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTC 42 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEe
Confidence 45677777777654431111111100 124677777776
No 32
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=39.62 E-value=2.2e+02 Score=24.00 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCCeEeCc
Q 025300 38 DMIALIRHAINSGITFLDTS 57 (255)
Q Consensus 38 ~~~~~l~~Al~~Gi~~~DTA 57 (255)
...+.++.+-+.|+..|+..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~ 33 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIW 33 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEc
Confidence 47889999999999999974
No 33
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=39.47 E-value=44 Score=24.68 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCcC
Q 025300 35 PEPDMIALIRHAINSGITFLDTSDIYG 61 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg 61 (255)
+...+.+....+++.|++.||.+..|-
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 567788999999999999999999985
No 34
>PF14502 HTH_41: Helix-turn-helix domain
Probab=37.75 E-value=41 Score=20.96 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCC--HHHHHHHHHHhCCCCe
Q 025300 154 LFECVNEIAANKGCT--PSQLALAWVHHQGDDV 184 (255)
Q Consensus 154 ~~~~l~~ia~~~g~s--~~qvaL~w~l~~~~v~ 184 (255)
.++.+.+++++++++ ..|-||+++-..+.|.
T Consensus 5 Ri~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 5 RIPTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred ccCCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 456778999999988 5799999999988754
No 35
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.61 E-value=1.2e+02 Score=26.12 Aligned_cols=76 Identities=9% Similarity=0.181 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---c-------CCcCCChHHHHHHHHhccCCCC-CEEEEeccCcCCCCCCCCCCCCHH
Q 025300 35 PEPDMIALIRHAINSGITFLDT---S-------DIYGPHTNEILLGKAFKGGFRE-RAELATKFGIGIVDGKYGYHGDPA 103 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DT---A-------~~Yg~g~sE~~lG~al~~~~R~-~v~I~tK~~~~~~~~~~~~~~~~~ 103 (255)
+.++..++.+.+.+.|+..||. + ..|+ .+.+.+-+.++...+. ++-|.-|+.+.. +
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~-----------~ 166 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV-----------T 166 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc-----------h
Confidence 5677888888888999999985 1 2233 2566666666653222 677888986531 1
Q ss_pred HHHHHHHHHHHHcCCCceeEE
Q 025300 104 YVRAACEASLKRLDVDCIDLY 124 (255)
Q Consensus 104 ~i~~~v~~SL~~L~~d~iDl~ 124 (255)
.+ ..+-+.+...|.|.|++.
T Consensus 167 ~~-~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 167 DI-VEIARAAEEAGADGLTLI 186 (296)
T ss_pred hH-HHHHHHHHHcCCCEEEEE
Confidence 22 233345677888777664
No 36
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=36.25 E-value=50 Score=25.02 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=34.3
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHhccCCCCCCCCCCCCCCccccccccc---CCC
Q 025300 196 LNENIEALSVKITPEEMAELEAIASADNVKGDRYPSSSGTYKSSTYKTA---DTP 247 (255)
Q Consensus 196 l~enl~a~~~~L~~ee~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 247 (255)
+.+.++. ..|++||+..+.+-..+...-|..-+.++ ++.-|+|+ +||
T Consensus 31 i~~al~~--~g~tpeefir~K~eFak~T~Lg~Ge~TCF---GSLVWCCKitKPCp 80 (153)
T COG4008 31 IHEALKE--LGLTPEEFIRIKEEFAKRTMLGYGENTCF---GSLVWCCKITKPCP 80 (153)
T ss_pred HHHHHHH--hCCCHHHHHHHHHHHhhccccccCCCccc---ceeeeeecCCCCcc
Confidence 4444543 37999999999888877777776666765 67889884 786
No 37
>PRK05406 LamB/YcsF family protein; Provisional
Probab=33.18 E-value=1.5e+02 Score=25.29 Aligned_cols=81 Identities=14% Similarity=0.233 Sum_probs=51.6
Q ss_pred eeccccccccCCCCCCHHHHHHHHHHHH-HcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEEEeccCcCCCCC--CC
Q 025300 20 GLGCMGMSALYGPPKPEPDMIALIRHAI-NSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDG--KY 96 (255)
Q Consensus 20 glGt~~~g~~~g~~~~~~~~~~~l~~Al-~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I~tK~~~~~~~~--~~ 96 (255)
+||.|++| ++++...+|.-|- .+|+ +.| ....+-+.++-.....|-|..-.+++...+ ..
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR 75 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRR 75 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCC
Confidence 67888876 4677777777773 5564 455 455666666544555677766655543222 23
Q ss_pred CCCCCHHHHHHHHHHHHHHcC
Q 025300 97 GYHGDPAYVRAACEASLKRLD 117 (255)
Q Consensus 97 ~~~~~~~~i~~~v~~SL~~L~ 117 (255)
..+.+++.++..+...+..|+
T Consensus 76 ~m~~s~~el~~~v~yQigAL~ 96 (246)
T PRK05406 76 NMDLSPEELYALVLYQIGALQ 96 (246)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 346788999888887777774
No 38
>PRK05660 HemN family oxidoreductase; Provisional
Probab=32.99 E-value=2e+02 Score=26.00 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEeec
Q 025300 100 GDPAYVRAACEASLKRLDVDCIDLYYQH 127 (255)
Q Consensus 100 ~~~~~i~~~v~~SL~~L~~d~iDl~~iH 127 (255)
.+.+.+.+.++..++ |+.|+|.+|.+-
T Consensus 171 qt~~~~~~~l~~~~~-l~p~~is~y~l~ 197 (378)
T PRK05660 171 QSLEEALDDLRQAIA-LNPPHLSWYQLT 197 (378)
T ss_pred CCHHHHHHHHHHHHh-cCCCeEEeeccE
Confidence 467777777777555 888888888664
No 39
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=32.84 E-value=3.2e+02 Score=25.27 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEEecCC------------------C---cHHHHHHHHhhcCCCCCH
Q 025300 151 NQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGT------------------T---KIANLNENIEALSVKITP 209 (255)
Q Consensus 151 ~~~~~~~l~~ia~~~g~s~~qvaL~w~l~~~~v~~vi~G~------------------~---~~~~l~enl~a~~~~L~~ 209 (255)
+..+...|.-+|++.|+..-+ ++.-+-.||.+..--||. . -..++-+.++-.+-.++.
T Consensus 225 NIALaNElali~~~~GIdvwe-vIeaAnt~P~~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~~rlI~tAreIN~~mP~ 303 (436)
T COG0677 225 NIALANELALICNAMGIDVWE-VIEAANTKPRVNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLPARLIRTAREINDSMPR 303 (436)
T ss_pred HHHHHHHHHHHHHHhCCcHHH-HHHHhccCCceeecCCCCCCCCcccccCchheeecccccCCchHHHHHHHHHhccCCH
Confidence 455678899999999999877 566667777654444552 2 445677777777778888
Q ss_pred HHHHHHHHHhc
Q 025300 210 EEMAELEAIAS 220 (255)
Q Consensus 210 ee~~~l~~~~~ 220 (255)
..+..+.+...
T Consensus 304 ~Vv~~~~~al~ 314 (436)
T COG0677 304 HVVDRVKEALN 314 (436)
T ss_pred HHHHHHHHHHH
Confidence 88777776554
No 40
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.58 E-value=2.9e+02 Score=22.91 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEEEeccCc
Q 025300 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGI 89 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I~tK~~~ 89 (255)
+.+++.++.+...+.|++.|.-.-.... ..+.|.+.-+..++--+-.-|+...
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~~--~~~~I~~l~~~~p~~~IGAGTVl~~ 77 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTPA--ALEAIRLIAKEVPEALIGAGTVLNP 77 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCcc--HHHHHHHHHHHCCCCEEEEeeccCH
Confidence 7899999999999999999997744433 6677766554455444556677654
No 41
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=32.52 E-value=99 Score=23.67 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCE
Q 025300 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERA 81 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v 81 (255)
+.++.+++.+.|++.|+.++|-.+.--...+++...+.++..+.+++
T Consensus 62 ~~~~L~~l~~~a~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l 108 (133)
T PF09391_consen 62 NSEQLRELRQKALEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDL 108 (133)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEGGGGG---HHHHHHHHTT--TTT-
T ss_pred CHHHHHHHHHHHHHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhc
Confidence 57889999999999999988844333222355555566665455554
No 42
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=32.19 E-value=47 Score=21.69 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHH----HHcCCCeEe-----CcCCcCCChHHHHHH
Q 025300 35 PEPDMIALIRHA----INSGITFLD-----TSDIYGPHTNEILLG 70 (255)
Q Consensus 35 ~~~~~~~~l~~A----l~~Gi~~~D-----TA~~Yg~g~sE~~lG 70 (255)
++.+|.++++.| .+.|+.++| +++.+- -|++||
T Consensus 15 ~~~tA~~IIrqAK~~lV~~G~~~Y~nkRlg~VP~~~---VEeiLG 56 (59)
T PF11372_consen 15 SESTARDIIRQAKALLVQKGFSFYNNKRLGRVPASA---VEEILG 56 (59)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccCCccCcccHHH---HHHHHC
Confidence 456788888877 467998876 333333 456655
No 43
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=31.85 E-value=3e+02 Score=22.91 Aligned_cols=92 Identities=17% Similarity=0.245 Sum_probs=60.1
Q ss_pred CCcccCcceeccccccccCC------------------CCCCHHHHHHHHHHHHHcCCCeEe-CcCCcCCChHHHHHHHH
Q 025300 12 QGLEVSAQGLGCMGMSALYG------------------PPKPEPDMIALIRHAINSGITFLD-TSDIYGPHTNEILLGKA 72 (255)
Q Consensus 12 tg~~vs~lglGt~~~g~~~g------------------~~~~~~~~~~~l~~Al~~Gi~~~D-TA~~Yg~g~sE~~lG~a 72 (255)
.|+.+|.+-||-+.-=..|| -..+++++..+-++|-++|+.++= +|+.-. .|++ ++
T Consensus 92 ~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTt---deRm--el 166 (268)
T KOG4175|consen 92 QGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTT---DERM--EL 166 (268)
T ss_pred cCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCCh---HHHH--HH
Confidence 47888888887542111111 123678888899999999999886 566655 3332 23
Q ss_pred hccCCCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcC
Q 025300 73 FKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLD 117 (255)
Q Consensus 73 l~~~~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~ 117 (255)
|.+..-.=+|+++.++.. .+.+.+...+...|+|.+
T Consensus 167 l~~~adsFiYvVSrmG~T---------G~~~svn~~l~~L~qrvr 202 (268)
T KOG4175|consen 167 LVEAADSFIYVVSRMGVT---------GTRESVNEKLQSLLQRVR 202 (268)
T ss_pred HHHhhcceEEEEEecccc---------ccHHHHHHHHHHHHHHHH
Confidence 333233447899999865 356778888888888775
No 44
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=31.17 E-value=2e+02 Score=24.57 Aligned_cols=81 Identities=15% Similarity=0.079 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---cCCcCCC----hHHHHHHHHhccCCCC-CEEEEeccCcCCCCCCCCCCCCHHHHH
Q 025300 35 PEPDMIALIRHAINSGITFLDT---SDIYGPH----TNEILLGKAFKGGFRE-RAELATKFGIGIVDGKYGYHGDPAYVR 106 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DT---A~~Yg~g----~sE~~lG~al~~~~R~-~v~I~tK~~~~~~~~~~~~~~~~~~i~ 106 (255)
+.++..++.+.+.+.|+..|+. ++....+ ...+.+.+.++..++. ++-|.-|+... .+.+.+.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---------~~~~~~~ 179 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY---------FDLEDIV 179 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC---------CCHHHHH
Confidence 5678888899999999999984 3332221 2345666666552221 56788898754 2444554
Q ss_pred HHHHHHHHHcCCCceeEEeecc
Q 025300 107 AACEASLKRLDVDCIDLYYQHR 128 (255)
Q Consensus 107 ~~v~~SL~~L~~d~iDl~~iH~ 128 (255)
+.++ .|...|+ |.+-+|+
T Consensus 180 ~~a~-~l~~~Ga---d~i~~~~ 197 (289)
T cd02810 180 ELAK-AAERAGA---DGLTAIN 197 (289)
T ss_pred HHHH-HHHHcCC---CEEEEEc
Confidence 4444 4566775 5555554
No 45
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=31.05 E-value=1.3e+02 Score=26.18 Aligned_cols=67 Identities=19% Similarity=0.109 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcC--------C--CCCHHHHHHHHHHhccCC
Q 025300 157 CVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALS--------V--KITPEEMAELEAIASADN 223 (255)
Q Consensus 157 ~l~~ia~~~g~s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~--------~--~L~~ee~~~l~~~~~~~~ 223 (255)
+.+++++++++...---+.=++..+.|..|++.+.+..|.+-.+++++ . .+|.+|.++|.++.++..
T Consensus 42 ~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~ 118 (342)
T COG0673 42 RAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAG 118 (342)
T ss_pred HHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 467888888876111123445777778888888888888887777664 3 467899998988888754
No 46
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=31.01 E-value=1.9e+02 Score=21.91 Aligned_cols=49 Identities=10% Similarity=-0.074 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCeEeCcCCcCC--------C----------hHHHHHHHHhccCCCCCEEEEeccC
Q 025300 40 IALIRHAINSGITFLDTSDIYGP--------H----------TNEILLGKAFKGGFRERAELATKFG 88 (255)
Q Consensus 40 ~~~l~~Al~~Gi~~~DTA~~Yg~--------g----------~sE~~lG~al~~~~R~~v~I~tK~~ 88 (255)
...+..+++.|+|+||.--.++. | ..-+.+.+++...+.+-|++.-|-.
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p~e~VIl~l~~~ 97 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVTSPYPVILSLENH 97 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhCCCCcEEEeehhh
Confidence 45888999999999994322221 1 1234455555555666677777754
No 47
>PRK12569 hypothetical protein; Provisional
Probab=30.50 E-value=1.9e+02 Score=24.71 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=52.7
Q ss_pred eeccccccccCCCCCC--HHHHHHHHHHHH-HcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEEEeccCcCCCCC--
Q 025300 20 GLGCMGMSALYGPPKP--EPDMIALIRHAI-NSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDG-- 94 (255)
Q Consensus 20 glGt~~~g~~~g~~~~--~~~~~~~l~~Al-~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I~tK~~~~~~~~-- 94 (255)
+||.|++| + +++...+|.-|- .+|+ +.| ....+.+.++-.....|-|.--.+++...+
T Consensus 14 sfG~~~~g-------~~~D~~lmp~ItsaNIACG~-------HAG---Dp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFG 76 (245)
T PRK12569 14 GFGPWRIG-------DGVDEALMPLISSANIATGF-------HAG---DPNIMRRTVELAKAHGVGIGAHPGFRDLVGFG 76 (245)
T ss_pred CCCCcCCC-------CccHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCEeccCCCCCcCCCCC
Confidence 67888875 4 677778887773 5564 455 466666666654556677766655543222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcC
Q 025300 95 KYGYHGDPAYVRAACEASLKRLD 117 (255)
Q Consensus 95 ~~~~~~~~~~i~~~v~~SL~~L~ 117 (255)
......+++.++..+...+..|+
T Consensus 77 Rr~m~~s~~el~~~v~yQigaL~ 99 (245)
T PRK12569 77 RRHINASPQELVNDVLYQLGALR 99 (245)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Confidence 22345788999888887777774
No 48
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=29.93 E-value=80 Score=28.76 Aligned_cols=170 Identities=13% Similarity=0.137 Sum_probs=77.8
Q ss_pred HcCCCeEe-----CcCCcCCChHHHHHHHHhccCCCCCEEEEeccCcCCCCC--CCCCCCC----HHHHHHHHHHHHHHc
Q 025300 48 NSGITFLD-----TSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDG--KYGYHGD----PAYVRAACEASLKRL 116 (255)
Q Consensus 48 ~~Gi~~~D-----TA~~Yg~g~sE~~lG~al~~~~R~~v~I~tK~~~~~~~~--~~~~~~~----~~~i~~~v~~SL~~L 116 (255)
+.++.-+| ++.-+. .++..|.+.++.....=+||-||+-..-... ..+..++ -+.|++.+.+.|++-
T Consensus 109 ~~~~~~yD~fiii~s~rf~--~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSERFT--ENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp HTTGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred HccccccCEEEEEeCCCCc--hhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 44666555 344444 3888899999885455578999986421100 1112233 356788899999999
Q ss_pred CCCceeEEeeccCCCCCC----cccccCCCCCCCCchhhHHHHHHH-HHHHHhcCCCH-HHHHHHHHHhCC-CCeEEecC
Q 025300 117 DVDCIDLYYQHRIDTQTP----IEVTHLPRFQPGNLEHNQKLFECV-NEIAANKGCTP-SQLALAWVHHQG-DDVCPIPG 189 (255)
Q Consensus 117 ~~d~iDl~~iH~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l-~~ia~~~g~s~-~qvaL~w~l~~~-~v~~vi~G 189 (255)
|+....+|+|-+.+.... +.++.................+.+ .++-++...+. ..+-+ ..+... ....|+||
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fllsLp~is~~~I~kKk~~lk~~Iw~-~Al~s~~~a~iP~~g 265 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFLLSLPNISEAAIEKKKESLKQKIWL-EALKSAAVATIPVPG 265 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHHHHS---SHHHHHHHHHHHHHHHHH-HHHHT--BSS-CCCS
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH-HHHHHHHhccCCCcc
Confidence 999999999988765321 111100000000000000000111 11111111122 22222 233333 24578899
Q ss_pred CC---cHHHHHHHHhhcC--CCCCHHHHHHHHHHhc
Q 025300 190 TT---KIANLNENIEALS--VKITPEEMAELEAIAS 220 (255)
Q Consensus 190 ~~---~~~~l~enl~a~~--~~L~~ee~~~l~~~~~ 220 (255)
.. +.+.+.+.+.... +-|+++-++.|.+-..
T Consensus 266 ~~~~~D~~~L~~~l~~Yr~~FGLDd~SL~~lA~~~g 301 (376)
T PF05049_consen 266 LSSACDLEILEKCLNQYRSSFGLDDESLQKLAQDTG 301 (376)
T ss_dssp S--HHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHTT
T ss_pred cccccCHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 88 5555566665543 6899998887776553
No 49
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=29.72 E-value=4.5e+02 Score=24.22 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=55.8
Q ss_pred cCcceecccccccc----CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEEEeccCcCC
Q 025300 16 VSAQGLGCMGMSAL----YGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGI 91 (255)
Q Consensus 16 vs~lglGt~~~g~~----~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I~tK~~~~~ 91 (255)
|.+|.+|-..|... -|+..+.+++.+++..+.+.|+.-|-.-=.||-
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl----------------------------- 198 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL----------------------------- 198 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-----------------------------
Confidence 33888888777532 345556788888888888888876655556661
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEeecc
Q 025300 92 VDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHR 128 (255)
Q Consensus 92 ~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~ 128 (255)
+..+.+.+.+.++..++ |+.|+|.+|.+-.
T Consensus 199 ------P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~ 228 (416)
T COG0635 199 ------PGQTLESLKEDLEQALE-LGPDHLSLYSLAI 228 (416)
T ss_pred ------CCCCHHHHHHHHHHHHh-CCCCEEEEeeeec
Confidence 13477888888888776 8899999997744
No 50
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=29.51 E-value=1.1e+02 Score=19.94 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCCHHHHH
Q 025300 157 CVNEIAANKGCTPSQLA 173 (255)
Q Consensus 157 ~l~~ia~~~g~s~~qva 173 (255)
.+.+||+++|++..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 67899999999999875
No 51
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=29.27 E-value=44 Score=25.63 Aligned_cols=48 Identities=23% Similarity=0.104 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCCeEeCcCCcCC---------C---------hHHHHHHHHhccCCCCCEEEEeccC
Q 025300 41 ALIRHAINSGITFLDTSDIYGP---------H---------TNEILLGKAFKGGFRERAELATKFG 88 (255)
Q Consensus 41 ~~l~~Al~~Gi~~~DTA~~Yg~---------g---------~sE~~lG~al~~~~R~~v~I~tK~~ 88 (255)
..+...|+.|||+||-=-.+++ . ..-..+.++|.+.+.+-|++.-|-.
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p~E~VIl~~~~~ 95 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWDGNDGELVVYHGITSTSGITFEDVLNDIRDFLFEHPSEPVILSLKHE 95 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEEETTSSEEEEETTSEE-EEEHHHHHHHHHHHTTHSTTS-EEEEEEEE
T ss_pred HhHHHHHhccCceEEEEEEcCCCCceEEEeCCEeeeeEeHHHHHHHHHHHHhcCCCeEEEEEeecc
Confidence 4788899999999994332222 1 1234455566554555566666653
No 52
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=28.70 E-value=3.4e+02 Score=22.48 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHH
Q 025300 34 KPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASL 113 (255)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL 113 (255)
.+.++..++++.|.+.|+.-+=..+.|- +...+.|+. .++-|+|=++++.+ ..+.+.-...+++.+
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~~---~~v~v~tVigFP~G------~~~~~~K~~E~~~Av 80 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLKG---TEVRICTVVGFPLG------ASTTDVKLYETKEAI 80 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcCC---CCCeEEEEeCCCCC------CCcHHHHHHHHHHHH
Confidence 4788999999999999987776555443 455555643 46888888887643 223444445555554
Q ss_pred HHcCCCceeEEeecc
Q 025300 114 KRLDVDCIDLYYQHR 128 (255)
Q Consensus 114 ~~L~~d~iDl~~iH~ 128 (255)
+ +|.|-||+++--.
T Consensus 81 ~-~GAdEiDvv~n~g 94 (211)
T TIGR00126 81 K-YGADEVDMVINIG 94 (211)
T ss_pred H-cCCCEEEeecchH
Confidence 4 7999999986544
No 53
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=28.29 E-value=2.8e+02 Score=22.43 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhcc----CCCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHH
Q 025300 36 EPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG----GFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEA 111 (255)
Q Consensus 36 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~----~~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~ 111 (255)
+.+..++|..- +.-+-.+|+..+.....=++.+-.+++. .|.--|++++-+......-........+..++.+++
T Consensus 48 e~~~a~~ia~~-~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~ 126 (178)
T PF14606_consen 48 EPEVADLIAEI-DADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALRE 126 (178)
T ss_dssp -HHHHHHHHHS---SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHH
T ss_pred CHHHHHHHhcC-CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHH
Confidence 34556666544 6667777777665433333444444433 355568888877654321111123356677788888
Q ss_pred HHHHcC-CCceeEEeeccCC
Q 025300 112 SLKRLD-VDCIDLYYQHRID 130 (255)
Q Consensus 112 SL~~L~-~d~iDl~~iH~p~ 130 (255)
..++|. -..-+|++|+..+
T Consensus 127 ~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 127 AVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp HHHHHHHTT-TTEEEE-HHH
T ss_pred HHHHHHHcCCCcEEEeCchh
Confidence 888872 3356788888865
No 54
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=27.90 E-value=49 Score=28.91 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCceeEEeeccCCCCCCcccc-----------------------cCCCC---------CCCCchhhHH
Q 025300 106 RAACEASLKRLDVDCIDLYYQHRIDTQTPIEVT-----------------------HLPRF---------QPGNLEHNQK 153 (255)
Q Consensus 106 ~~~v~~SL~~L~~d~iDl~~iH~p~~~~~~~~~-----------------------~~~~~---------~~~~~~~~~~ 153 (255)
+..|+..+++. .+..|++|+|.-.....+.+. .+|.. ..+.+.-...
T Consensus 54 k~~vd~~v~Kf-~~nF~i~LfhYDg~vd~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f 132 (294)
T PF05212_consen 54 KDNVDAIVKKF-SDNFDIMLFHYDGRVDEWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHF 132 (294)
T ss_pred HhhhhHHHhhh-ccCceEEEEEecCCcCchhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcC
Confidence 56678888888 789999999996543333221 22211 1111111112
Q ss_pred HHHHHHHHHHhcCCCHHHHHHH
Q 025300 154 LFECVNEIAANKGCTPSQLALA 175 (255)
Q Consensus 154 ~~~~l~~ia~~~g~s~~qvaL~ 175 (255)
-..++-+|.+++|+..+|-||.
T Consensus 133 ~~~ry~~Ivk~~gLeISQPALd 154 (294)
T PF05212_consen 133 DINRYFEIVKKEGLEISQPALD 154 (294)
T ss_pred CHHHHHHHHHHhCCcccCcccC
Confidence 2457789999999999998887
No 55
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=26.73 E-value=1.6e+02 Score=23.04 Aligned_cols=79 Identities=13% Similarity=-0.005 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcCCcCCChH--HHHHHHHhccC-C--CCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHH
Q 025300 36 EPDMIALIRHAINSGITFLDTSDIYGPHTN--EILLGKAFKGG-F--RERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (255)
Q Consensus 36 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s--E~~lG~al~~~-~--R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~ 110 (255)
.+++.+..+.|.+.|...+.....|+...+ ++.+-+.++.. . +.++.|.-+..+.. ..+++.+.+..+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~-------~~~~~~~~~~~~ 136 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRG-------LKTADEIAKAAR 136 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCC-------CCCHHHHHHHHH
Confidence 688999999999999999996555542222 44444444431 1 12455554443321 124555554433
Q ss_pred HHHHHcCCCcee
Q 025300 111 ASLKRLDVDCID 122 (255)
Q Consensus 111 ~SL~~L~~d~iD 122 (255)
.. +..|++.|.
T Consensus 137 ~~-~~~g~~~iK 147 (201)
T cd00945 137 IA-AEAGADFIK 147 (201)
T ss_pred HH-HHhCCCEEE
Confidence 33 567766554
No 56
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=26.72 E-value=80 Score=22.79 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=30.3
Q ss_pred CcHHHHHHHHhhcCCCCCHHHHHHHHHHhccCCCCCCC
Q 025300 191 TKIANLNENIEALSVKITPEEMAELEAIASADNVKGDR 228 (255)
Q Consensus 191 ~~~~~l~enl~a~~~~L~~ee~~~l~~~~~~~~~~~~~ 228 (255)
.=..|..+-+..-++.|++++|..|.+......-.|-+
T Consensus 16 kfSkHA~~RL~~R~I~l~~~~~~~i~~av~~A~~KG~k 53 (96)
T TIGR02530 16 KLSKHALERMRERNISINPDDWKKLLEAVEEAESKGVK 53 (96)
T ss_pred eEcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 33467888888888999999999999988876666654
No 57
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.37 E-value=2.6e+02 Score=20.46 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEEEeccCcCCCCC----------CCCCCCCHHH
Q 025300 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDG----------KYGYHGDPAY 104 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I~tK~~~~~~~~----------~~~~~~~~~~ 104 (255)
|..-.+...--.+++|.-|+-|-..|--| .|-++---|-+ ..++++|++|+....+.+ ....+-.-..
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~ 95 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLK 95 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhh
Confidence 44556777777889999999999999754 34444333333 455899999985432211 0111112346
Q ss_pred HHHHHHHHHHHc
Q 025300 105 VRAACEASLKRL 116 (255)
Q Consensus 105 i~~~v~~SL~~L 116 (255)
+++++|.-|...
T Consensus 96 vr~~IE~~Lg~~ 107 (117)
T COG3215 96 VRNQIETLLGGT 107 (117)
T ss_pred HHHHHHHHHHhh
Confidence 888999887653
No 58
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=26.23 E-value=82 Score=19.16 Aligned_cols=21 Identities=24% Similarity=0.025 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHH
Q 025300 156 ECVNEIAANKGCTPSQLALAW 176 (255)
Q Consensus 156 ~~l~~ia~~~g~s~~qvaL~w 176 (255)
..++.+.++.|++..++|-+-
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~ 25 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLA 25 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 455666666777777766543
No 59
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=25.91 E-value=1.2e+02 Score=24.09 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhcc-CCCCCEEEEe
Q 025300 42 LIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG-GFRERAELAT 85 (255)
Q Consensus 42 ~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~-~~R~~v~I~t 85 (255)
+-....+.|++.....-. ++ ++..|-++|+. ..+.+++|+|
T Consensus 24 l~~~L~~~G~~v~~~~~v-~D--d~~~I~~~l~~~~~~~dlVItt 65 (170)
T cd00885 24 LAKELAELGIEVYRVTVV-GD--DEDRIAEALRRASERADLVITT 65 (170)
T ss_pred HHHHHHHCCCEEEEEEEe-CC--CHHHHHHHHHHHHhCCCEEEEC
Confidence 333344679988764433 22 66667777765 3577899998
No 60
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=25.84 E-value=98 Score=23.86 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=31.5
Q ss_pred cCCCHHHHHHHHHHhCCCCeEEecCCCcHHHHHHHHhhcCC---CCCHHHHHHHHHH
Q 025300 165 KGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSV---KITPEEMAELEAI 218 (255)
Q Consensus 165 ~g~s~~qvaL~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~---~L~~ee~~~l~~~ 218 (255)
.+++++-.+-.|+-+-..|-.-+-|+++.+-++...+.++. .|..|+...+...
T Consensus 69 knmtpsPF~R~YlddGr~vL~Dld~~~r~eI~~hl~K~lGKtee~lr~Ee~ek~~k~ 125 (169)
T KOG4079|consen 69 KNMTPSPFARAYLDDGREVLFDLDGMKREEIEKHLAKTLGKTEEVLRREELEKIAKL 125 (169)
T ss_pred ccCCCChHHHheecCcceEEEEcccccHHHHHHHHHHHhCccHHHHhHHHHHHHhhc
Confidence 46777777766666555544445566666655555666654 4555655554443
No 61
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=25.06 E-value=90 Score=23.18 Aligned_cols=40 Identities=18% Similarity=0.094 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccC
Q 025300 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGG 76 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~ 76 (255)
+.+.-.+++..+++.|.+.-+.|.-||- ++..|.+|++.+
T Consensus 14 s~EfK~~aV~~~~~~g~sv~evA~e~gI--s~~tl~~W~r~y 53 (121)
T PRK09413 14 TTQEKIAIVQQSFEPGMTVSLVARQHGV--AASQLFLWRKQY 53 (121)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc--CHHHHHHHHHHH
Confidence 5666778999999999999999999997 999999999884
No 62
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=24.05 E-value=1.9e+02 Score=20.12 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHH
Q 025300 150 HNQKLFECVNEIAANKGCTPSQLALAW 176 (255)
Q Consensus 150 ~~~~~~~~l~~ia~~~g~s~~qvaL~w 176 (255)
+....+.+|.++|++.|++.+++|.-.
T Consensus 49 ~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 49 KVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 445667899999999999999987543
No 63
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=23.48 E-value=3.6e+02 Score=23.36 Aligned_cols=162 Identities=20% Similarity=0.217 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHc--CCCeEeCcCCcCCChHHHHHHHHhccC-CCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHH
Q 025300 37 PDMIALIRHAINS--GITFLDTSDIYGPHTNEILLGKAFKGG-FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASL 113 (255)
Q Consensus 37 ~~~~~~l~~Al~~--Gi~~~DTA~~Yg~g~sE~~lG~al~~~-~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL 113 (255)
+.+..+.++++.+ |+.+.= ..|..=++++-+-+++... ...-+++.|=+. ..+++.+.+..
T Consensus 16 eTAe~v~~A~l~QF~~~~~~~--~~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv~--------------~elr~~l~~~~ 79 (269)
T PRK05339 16 ETAETVGRAALSQFPNVEFEE--HRYPFVRTEEKADEVLEEINAERPIVFYTLVD--------------PELREILEERC 79 (269)
T ss_pred HHHHHHHHHHHHhCCCCCeeE--EEeCCcCCHHHHHHHHHHHHhcCCEEEEeCCC--------------HHHHHHHHHHH
Confidence 4566677767654 454321 1232223666676776653 345577777664 34899999999
Q ss_pred HHcCCCceeEEe--eccCCCCCCcccccCCCCCCCC---c-hhhHHHHHHHHHHHHhc----------------------
Q 025300 114 KRLDVDCIDLYY--QHRIDTQTPIEVTHLPRFQPGN---L-EHNQKLFECVNEIAANK---------------------- 165 (255)
Q Consensus 114 ~~L~~d~iDl~~--iH~p~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~l~~ia~~~---------------------- 165 (255)
+.+++.++|++- +........ ..|...+.. + ......++.+ +++-+|
T Consensus 80 ~~~~i~~vdll~p~i~~le~~lg----~~p~~~pG~~~~ld~~Yf~RIeAi-efal~hDDG~~~~~l~~ADIiLvGVSRt 154 (269)
T PRK05339 80 AEFGIPCIDILGPLIAPLEQELG----LKPTPEPGRTHGLDEEYFKRIEAI-EFALAHDDGQDPRGLDEADVILVGVSRT 154 (269)
T ss_pred HHcCCCEEeccHHHHHHHHHHHC----cCCCCCCCcccCCcHHHHHHHHHH-HHHHHcCCCCCcCCcccCCEEEECcCCC
Confidence 999999999972 111100000 111111111 1 1112222222 223332
Q ss_pred CCCHHHHHHHHHHhCCCCeEE-ecCCCcHHHHHHHHh--hcCCCCCHHHHHHHHHHhc
Q 025300 166 GCTPSQLALAWVHHQGDDVCP-IPGTTKIANLNENIE--ALSVKITPEEMAELEAIAS 220 (255)
Q Consensus 166 g~s~~qvaL~w~l~~~~v~~v-i~G~~~~~~l~enl~--a~~~~L~~ee~~~l~~~~~ 220 (255)
|+||.-+=|+. ..--..-.| +|+..=|+.|.+.-. .+++..+++-+.+|++--.
T Consensus 155 sKTPlS~YLA~-~G~KvAN~PLvpe~~lP~~L~~~~~~kivGLtIdp~rL~~IR~~Rl 211 (269)
T PRK05339 155 SKTPTSLYLAN-KGIKAANYPLVPEVPLPEELFPIDPKKIFGLTIDPERLIEIRKERL 211 (269)
T ss_pred CCcHHHHHHHc-cCCceEeeCCCCCCCCCHHHHhCCCCcEEEEeCCHHHHHHHHHHHh
Confidence 35666654443 222222223 467777888877643 6677888888888886654
No 64
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=23.17 E-value=5.2e+02 Score=22.98 Aligned_cols=42 Identities=12% Similarity=-0.028 Sum_probs=24.2
Q ss_pred CCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeE
Q 025300 78 RERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDL 123 (255)
Q Consensus 78 R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~d~iDl 123 (255)
..++.|..|++...... ...+.+... .+-+-|+.+|+|+|++
T Consensus 202 G~d~~v~iRi~~~D~~~---~g~~~~e~~-~i~~~Le~~G~d~i~v 243 (353)
T cd02930 202 GEDFIIIYRLSMLDLVE---GGSTWEEVV-ALAKALEAAGADILNT 243 (353)
T ss_pred CCCceEEEEecccccCC---CCCCHHHHH-HHHHHHHHcCCCEEEe
Confidence 45778888887542100 113444443 3445577888888876
No 65
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=22.96 E-value=2.9e+02 Score=19.69 Aligned_cols=59 Identities=24% Similarity=0.259 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 025300 39 MIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV 118 (255)
Q Consensus 39 ~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~ 118 (255)
...+.....++|+|.+|. |+.++-.+|.= .+..-+... ..+...+++.++.-.++||+
T Consensus 17 va~is~vLAe~~vNIldi--------sQtvm~~~ftm------~~lV~~~~~--------~~d~~~lr~~l~~~~~~lgv 74 (90)
T COG3830 17 VAAVSRVLAEHGVNILDI--------SQTVMDGFFTM------IMLVDISKE--------VVDFAALRDELAAEGKKLGV 74 (90)
T ss_pred hHHHHHHHHHcCCcEEEH--------HHHHHhhhcee------eeEEcCChH--------hccHHHHHHHHHHHHHhcCc
Confidence 344555556899999996 66777666632 222222211 34678899999999999996
Q ss_pred C
Q 025300 119 D 119 (255)
Q Consensus 119 d 119 (255)
+
T Consensus 75 ~ 75 (90)
T COG3830 75 D 75 (90)
T ss_pred E
Confidence 4
No 66
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.90 E-value=2.2e+02 Score=27.57 Aligned_cols=60 Identities=18% Similarity=0.122 Sum_probs=41.9
Q ss_pred ChHHHHHHHHhcc-CCCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCCceeEEeeccCCCCCCccc
Q 025300 63 HTNEILLGKAFKG-GFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRL-DVDCIDLYYQHRIDTQTPIEV 137 (255)
Q Consensus 63 g~sE~~lG~al~~-~~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L-~~d~iDl~~iH~p~~~~~~~~ 137 (255)
|.|-+-++++|-+ .+|+++.|+-=.. .++ .-+-.||+|| |.-|+.=+.+-|-.+..+.++
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLTY------------ERe---~VLm~sLeRL~gLPYLnKvvVVWNspk~P~dd 693 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLTY------------ERE---AVLMGSLERLHGLPYLNKVVVVWNSPKDPPDD 693 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEEe------------hHH---HHHHHHHHHhhCCcccceEEEEeCCCCCChhc
Confidence 4577888888877 4888877654432 223 3477899999 688998888888666555443
No 67
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=22.69 E-value=47 Score=26.97 Aligned_cols=16 Identities=38% Similarity=0.295 Sum_probs=11.4
Q ss_pred HHHHHcCCCceeEEee
Q 025300 111 ASLKRLDVDCIDLYYQ 126 (255)
Q Consensus 111 ~SL~~L~~d~iDl~~i 126 (255)
+.|+.||+||||==-+
T Consensus 87 qiLealgVD~IDESEV 102 (208)
T PF01680_consen 87 QILEALGVDYIDESEV 102 (208)
T ss_dssp HHHHHTT-SEEEEETT
T ss_pred hhHHHhCCceeccccc
Confidence 4588899999996433
No 68
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=22.32 E-value=4.8e+02 Score=22.95 Aligned_cols=83 Identities=11% Similarity=-0.010 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---cC-----CcCCC----hHHHHHHHHhccC---CCCCEEEEeccCcCCCCCCCCCC
Q 025300 35 PEPDMIALIRHAINSGITFLDT---SD-----IYGPH----TNEILLGKAFKGG---FRERAELATKFGIGIVDGKYGYH 99 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DT---A~-----~Yg~g----~sE~~lG~al~~~---~R~~v~I~tK~~~~~~~~~~~~~ 99 (255)
++++..++...+.+.|+..||- .+ .||.| ..-+.+.+.++.. -..++-|+-|+.... +
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~-------~ 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW-------D 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC-------C
Confidence 6777888888888999999992 22 36655 3445555555542 122477888875431 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEeeccC
Q 025300 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRI 129 (255)
Q Consensus 100 ~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p 129 (255)
+.+.. ..+-+.|+..| +|.+-+|.-
T Consensus 146 -~~~~~-~~~a~~l~~~G---vd~i~Vh~R 170 (312)
T PRK10550 146 -SGERK-FEIADAVQQAG---ATELVVHGR 170 (312)
T ss_pred -CchHH-HHHHHHHHhcC---CCEEEECCC
Confidence 11222 34555567777 466677863
No 69
>PRK05826 pyruvate kinase; Provisional
Probab=22.18 E-value=6.6e+02 Score=23.61 Aligned_cols=100 Identities=17% Similarity=0.103 Sum_probs=63.1
Q ss_pred HHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 025300 39 MIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV 118 (255)
Q Consensus 39 ~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L~~ 118 (255)
-.+.++.+++.|+.+|=.+-.-..-.. +.+-+.+.....+++.|..|+-. ++.+ +.+++.++-
T Consensus 175 D~~~i~~ald~g~d~I~~sfV~saedv-~~l~~~l~~~~~~~~~iiakIEt------------~eav-~nldeI~~~--- 237 (465)
T PRK05826 175 DKADIKFAAEQGVDYIAVSFVRSAEDV-EEARRLLREAGCPHAKIIAKIER------------AEAV-DNIDEIIEA--- 237 (465)
T ss_pred hHHHHHHHHHCCCCEEEECCCCCHHHH-HHHHHHHHHcCCcCceEEEEEcC------------HHHH-HhHHHHHHH---
Confidence 445678999999999987766652111 22345565533337999999853 3434 567777665
Q ss_pred CceeEEeeccCCCCCCcccccCCCCCCCCchhhHHHHHHHHHHHHhcCCC
Q 025300 119 DCIDLYYQHRIDTQTPIEVTHLPRFQPGNLEHNQKLFECVNEIAANKGCT 168 (255)
Q Consensus 119 d~iDl~~iH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 168 (255)
+|.+++-.-|-...+ + .+......+.+.+.|+++|+.
T Consensus 238 --~DgImIgrgDLg~el-----g------~~~v~~~qk~Ii~~c~~~gKp 274 (465)
T PRK05826 238 --SDGIMVARGDLGVEI-----P------DEEVPGLQKKIIRKAREAGKP 274 (465)
T ss_pred --cCEEEECcchhhhhc-----C------cHhHHHHHHHHHHHHHHcCCC
Confidence 799999886643211 1 233344556777888888865
No 70
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=22.04 E-value=3.8e+02 Score=20.82 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=50.9
Q ss_pred HHHHHHHHHH-HcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHHHHc
Q 025300 38 DMIALIRHAI-NSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRL 116 (255)
Q Consensus 38 ~~~~~l~~Al-~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~~L 116 (255)
.-.+++..++ +.|+..+.+.-.=. -|+++-.|+++ .-+-|.|++=.+ ........+-+-|+..
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~~t---p~e~v~aA~~~-dv~vIgvSsl~g------------~h~~l~~~lve~lre~ 90 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLFQT---PEEAVRAAVEE-DVDVIGVSSLDG------------GHLTLVPGLVEALREA 90 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCcCC---HHHHHHHHHhc-CCCEEEEEeccc------------hHHHHHHHHHHHHHHh
Confidence 3456777777 57999888776666 69999999876 444444544433 3466778888889999
Q ss_pred CCCceeEEeeccC
Q 025300 117 DVDCIDLYYQHRI 129 (255)
Q Consensus 117 ~~d~iDl~~iH~p 129 (255)
|.+.+= +++-..
T Consensus 91 G~~~i~-v~~GGv 102 (143)
T COG2185 91 GVEDIL-VVVGGV 102 (143)
T ss_pred CCcceE-EeecCc
Confidence 987654 334443
No 71
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=21.85 E-value=5.8e+02 Score=22.96 Aligned_cols=78 Identities=22% Similarity=0.150 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCCe---E---eCcCCcCCChHHHHHHHHhcc---CCCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHH
Q 025300 39 MIALIRHAINSGITF---L---DTSDIYGPHTNEILLGKAFKG---GFRERAELATKFGIGIVDGKYGYHGDPAYVRAAC 109 (255)
Q Consensus 39 ~~~~l~~Al~~Gi~~---~---DTA~~Yg~g~sE~~lG~al~~---~~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v 109 (255)
..+++++|-+.|+.. | +.++.++.- ..+.+-+..+. ..-+.|.|.--+|.. .|..+.+-+
T Consensus 164 ~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~-~~~~l~~~~~~~~~~Gad~I~l~DT~G~a----------~P~~v~~lv 232 (347)
T PLN02746 164 YREVALAAKKHSIPVRGYVSCVVGCPIEGPV-PPSKVAYVAKELYDMGCYEISLGDTIGVG----------TPGTVVPML 232 (347)
T ss_pred HHHHHHHHHHcCCeEEEEEEeeecCCccCCC-CHHHHHHHHHHHHHcCCCEEEecCCcCCc----------CHHHHHHHH
Confidence 447888999999876 2 334444431 22333232222 244567777666643 688888888
Q ss_pred HHHHHHcCCCceeEEeeccCC
Q 025300 110 EASLKRLDVDCIDLYYQHRID 130 (255)
Q Consensus 110 ~~SL~~L~~d~iDl~~iH~p~ 130 (255)
+...+++... -+-+|.-+
T Consensus 233 ~~l~~~~~~~---~i~~H~Hn 250 (347)
T PLN02746 233 EAVMAVVPVD---KLAVHFHD 250 (347)
T ss_pred HHHHHhCCCC---eEEEEECC
Confidence 8888776532 24456544
No 72
>PF13518 HTH_28: Helix-turn-helix domain
Probab=21.54 E-value=1.2e+02 Score=18.22 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Q 025300 157 CVNEIAANKGCTPSQLALAWVHH 179 (255)
Q Consensus 157 ~l~~ia~~~g~s~~qvaL~w~l~ 179 (255)
.+.++|+++|++..++ .+|+..
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4567888888888775 777644
No 73
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=21.39 E-value=2.7e+02 Score=24.11 Aligned_cols=78 Identities=9% Similarity=0.061 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeC---cCC-----cCCChHHHHHHHHhccCCC-CCEEEEeccCcCCCCCCCCCCCCHHH
Q 025300 35 PEPDMIALIRHAINSG-ITFLDT---SDI-----YGPHTNEILLGKAFKGGFR-ERAELATKFGIGIVDGKYGYHGDPAY 104 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~G-i~~~DT---A~~-----Yg~g~sE~~lG~al~~~~R-~~v~I~tK~~~~~~~~~~~~~~~~~~ 104 (255)
+.++..++.+.+.+.| +..||- +++ |..+.+.+.+-+.++..++ -++-|..|+.+.. +.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~-----------~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV-----------TD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc-----------hh
Confidence 5677888888888898 999975 211 1122356677776665322 2678889987531 22
Q ss_pred HHHHHHHHHHHcCCCceeEE
Q 025300 105 VRAACEASLKRLDVDCIDLY 124 (255)
Q Consensus 105 i~~~v~~SL~~L~~d~iDl~ 124 (255)
+. .+-+.|+..|+|.|++.
T Consensus 171 ~~-~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 171 IV-EIAKAAEEAGADGLSLI 189 (301)
T ss_pred HH-HHHHHHHHcCCCEEEEE
Confidence 22 33345777888777664
No 74
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=21.26 E-value=5.5e+02 Score=22.27 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCcCCcC
Q 025300 33 PKPEPDMIALIRHAINSGITFLDTSDIYG 61 (255)
Q Consensus 33 ~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg 61 (255)
..+.+...++++.+.+.|+..|=-++..|
T Consensus 151 ~~~~~~~~~~~~~~~~~G~d~i~l~DT~G 179 (287)
T PRK05692 151 EVPPEAVADVAERLFALGCYEISLGDTIG 179 (287)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeccccC
Confidence 34677888888888888888774444455
No 75
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=21.18 E-value=2.5e+02 Score=24.30 Aligned_cols=187 Identities=14% Similarity=0.051 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEe--CcCCcCCC------hHHHHHHHHhcc---C------CCCC-EEEEeccCcCCCCCCC
Q 025300 35 PEPDMIALIRHAINSGITFLD--TSDIYGPH------TNEILLGKAFKG---G------FRER-AELATKFGIGIVDGKY 96 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~D--TA~~Yg~g------~sE~~lG~al~~---~------~R~~-v~I~tK~~~~~~~~~~ 96 (255)
++.-...-++.--+.|++++= |=..||.. .-++.|..+.+- . -|=| |+++.|.
T Consensus 57 np~P~l~~L~~l~~~gy~~yfq~Tit~Y~~~lEp~vP~~~~~i~~f~~Ls~~iG~~rViWRYDPIil~~~~--------- 127 (266)
T PF08902_consen 57 NPAPFLPYLDELDERGYPYYFQFTITGYGKDLEPNVPPKDERIETFRELSERIGPERVIWRYDPIILTDKY--------- 127 (266)
T ss_pred CcHHHHhhHHHHHhCCCceEEEEEeCCCCccccCCCCCHHHHHHHHHHHHHHHCCCcEEEecCCEeECCCC---------
Confidence 445567778888888988553 66677742 233344433221 1 3333 3444442
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCceeEEeeccCCCCCCcccc---cCCCCCCCCchhhHHHHHHHHHHHHhcCCCHHHHH
Q 025300 97 GYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVT---HLPRFQPGNLEHNQKLFECVNEIAANKGCTPSQLA 173 (255)
Q Consensus 97 ~~~~~~~~i~~~v~~SL~~L~~d~iDl~~iH~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qva 173 (255)
+.+.-.+.++..-++|. .|.+=+.+-..|.......- ....+.....+....+...+.++|+++|+++..-|
T Consensus 128 ----~~~~h~~~F~~la~~L~-g~t~~~viSF~D~Y~k~~~~l~~~~~~~~~~~~~~~~~l~~~l~~ia~~~g~~l~tC~ 202 (266)
T PF08902_consen 128 ----TVDYHLEAFERLAEALA-GYTDRCVISFLDLYRKVRRNLARLGFRIREPSEEEKRELAKRLAEIAKKYGMTLYTCA 202 (266)
T ss_pred ----CHHHHHHHHHHHHHHHh-ccCCEEEEEeeeccHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEeCc
Confidence 45677888888888887 56666666555543222211 11112233344556677888999999997643222
Q ss_pred HHHHHhCCCCeEEecCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhccCCCCCCCCCCCCCCcccccccccCC
Q 025300 174 LAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASADNVKGDRYPSSSGTYKSSTYKTADT 246 (255)
Q Consensus 174 L~w~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~ee~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (255)
=.-.++..+ +.--++-+.+-+++.. +.++.. .+-....+.=|..-+.--|+||.|.+-|+-|
T Consensus 203 E~~~l~~~G--i~~~~CId~~li~~~~---g~~~~~------~kd~~QR~~C~C~~S~DIG~Y~TC~hgC~YC 264 (266)
T PF08902_consen 203 EKIDLSQYG--IEPGGCIDGELIERLF---GRPLKS------KKDKGQRKECGCVESIDIGAYNTCPHGCRYC 264 (266)
T ss_pred CCcchhhcC--CCCCCCCCHHHHHHHh---CCCcCc------CCCCCCCCCCCCcCcccccccCCCCCCCeec
Confidence 222233333 2233455566555553 223310 0000111112344455568888888776655
No 76
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=21.04 E-value=2.3e+02 Score=25.30 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=57.7
Q ss_pred cCcceeccccccc----cCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCcC-CChHHHHHHHHhcc---CCCCCEEEEecc
Q 025300 16 VSAQGLGCMGMSA----LYGPPKPEPDMIALIRHAINSGITFLDTSDIYG-PHTNEILLGKAFKG---GFRERAELATKF 87 (255)
Q Consensus 16 vs~lglGt~~~g~----~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~g~sE~~lG~al~~---~~R~~v~I~tK~ 87 (255)
|.+|.+|.-++.. ..|...+.+++.++++.+.+.|+..|-.-=+|| +|.+.+.+-+.++. ...+.+.+-. +
T Consensus 109 vnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~-L 187 (350)
T PRK08446 109 VNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLSAYS-L 187 (350)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEecc-c
Confidence 4467777655542 235555788899999999999997543334787 66666666666554 2333332221 1
Q ss_pred CcCCCCC---CCCCCCCHHHHHHHHHHHHHHcCCC
Q 025300 88 GIGIVDG---KYGYHGDPAYVRAACEASLKRLDVD 119 (255)
Q Consensus 88 ~~~~~~~---~~~~~~~~~~i~~~v~~SL~~L~~d 119 (255)
...+... ......+.+.+.+...+-|+..|-.
T Consensus 188 ~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 222 (350)
T PRK08446 188 TIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFK 222 (350)
T ss_pred eecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCc
Confidence 1110000 0000124455777777788887743
No 77
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=20.70 E-value=6.5e+02 Score=22.90 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEeec
Q 025300 100 GDPAYVRAACEASLKRLDVDCIDLYYQH 127 (255)
Q Consensus 100 ~~~~~i~~~v~~SL~~L~~d~iDl~~iH 127 (255)
.+.+.+++.++..++ |+.++|-+|.+.
T Consensus 179 qt~e~~~~tl~~~~~-l~p~~is~y~L~ 205 (400)
T PRK07379 179 QTLEDWQASLEAAIA-LNPTHLSCYDLV 205 (400)
T ss_pred CCHHHHHHHHHHHHc-CCCCEEEEecce
Confidence 367777777776554 888888888665
No 78
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.34 E-value=93 Score=26.55 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCC
Q 025300 29 LYGPPKPEPDMIALIRHAINSGI 51 (255)
Q Consensus 29 ~~g~~~~~~~~~~~l~~Al~~Gi 51 (255)
.|....+.+++.+++..|+++||
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhh
Confidence 47777789999999999999998
No 79
>PRK09206 pyruvate kinase; Provisional
Probab=20.19 E-value=7.4e+02 Score=23.37 Aligned_cols=103 Identities=16% Similarity=0.068 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCcCCChHHHHHHHHhccCCCCCEEEEeccCcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 025300 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (255)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~~SL~ 114 (255)
++.+.. -++.++++|+.||-.+-.=. ...=..+.+.+.....+++.|..|+-.. +. .+.+++.++
T Consensus 171 tekD~~-di~f~~~~~vD~ia~SFVr~-~~Dv~~~r~~l~~~~~~~~~iiaKIEt~------------ea-v~nldeIl~ 235 (470)
T PRK09206 171 AEKDKQ-DLIFGCEQGVDFVAASFIRK-RSDVLEIREHLKAHGGENIQIISKIENQ------------EG-LNNFDEILE 235 (470)
T ss_pred CHHHHH-HHHHHHHcCCCEEEEcCCCC-HHHHHHHHHHHHHcCCCCceEEEEECCH------------HH-HHhHHHHHH
Confidence 444444 47999999999997654433 1122444666665333679999998532 32 345666666
Q ss_pred HcCCCceeEEeeccCCCCCCcccccCCCCCCCCchhhHHHHHHHHHHHHhcCCC
Q 025300 115 RLDVDCIDLYYQHRIDTQTPIEVTHLPRFQPGNLEHNQKLFECVNEIAANKGCT 168 (255)
Q Consensus 115 ~L~~d~iDl~~iH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 168 (255)
- .|.+++-+-|-...+ . .+......+.+.+.|+++|+.
T Consensus 236 ~-----~DgImVaRGDLgvel--------g---~e~vp~~qk~ii~~~~~~gkp 273 (470)
T PRK09206 236 A-----SDGIMVARGDLGVEI--------P---VEEVIFAQKMMIEKCNRARKV 273 (470)
T ss_pred h-----CCEEEECcchhhhhc--------C---HHHHHHHHHHHHHHHHHcCCC
Confidence 5 899999886643211 1 233334556777788888864
No 80
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=20.15 E-value=5.6e+02 Score=22.00 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHH--cCCCeEeCcCCcCCChHHHHHHHHhccCCCC-CEEEEeccCcCCCCCCCCCCCCHHHHHHHHH
Q 025300 34 KPEPDMIALIRHAIN--SGITFLDTSDIYGPHTNEILLGKAFKGGFRE-RAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (255)
Q Consensus 34 ~~~~~~~~~l~~Al~--~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~-~v~I~tK~~~~~~~~~~~~~~~~~~i~~~v~ 110 (255)
.+.++..++++.|.+ .|+.-+=..+.|- +...+.|+. ... ++-|+|=++++.+ ..+.+.-....+
T Consensus 23 ~T~~~I~~lc~eA~~~~~~faaVcV~P~~v-----~~a~~~L~~-~~~~~vkv~tVigFP~G------~~~t~~K~~Ea~ 90 (257)
T PRK05283 23 DTDEKVIALCHQAKTPVGNTAAICIYPRFI-----PIARKTLRE-QGTPEIRIATVTNFPHG------NDDIDIALAETR 90 (257)
T ss_pred CCHHHHHHHHHHHHhcCCCeeEEEECHHHH-----HHHHHHhcc-cCCCCCeEEEEecCCCC------CCcHHHHHHHHH
Confidence 478899999999999 5777666555543 455555643 112 5778887887643 234555556666
Q ss_pred HHHHHcCCCceeEEe
Q 025300 111 ASLKRLDVDCIDLYY 125 (255)
Q Consensus 111 ~SL~~L~~d~iDl~~ 125 (255)
..++ .|.|-||+++
T Consensus 91 ~Ai~-~GAdEiD~Vi 104 (257)
T PRK05283 91 AAIA-YGADEVDVVF 104 (257)
T ss_pred HHHH-cCCCEEeeec
Confidence 6666 5999999984
Done!