BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025301
         (255 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6GQ37|NDUF7_XENLA NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
           OS=Xenopus laevis GN=ndufaf7 PE=2 SV=1
          Length = 437

 Score = 41.6 bits (96), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 17  ILDNSKIWYHVLMTSMKLGARGVAHVEGVS-RVNLNDNRR-YSNLLLINRTASPLSWFME 74
           +LD+  I  H++  S KL       + G S  V L+ N   Y N   I +T  P+ W+ +
Sbjct: 147 LLDSCDISVHLVEVSPKLSDIQAQRLTGKSIEVELDSNSPVYKNG--ITKTGRPVCWYQD 204

Query: 75  CKDRKNHSALMLPHSFLPSMAAEKLRDAADKIKALLVDYD 114
            +D  N  +  + H F  ++   KL+   D  + +L+D D
Sbjct: 205 IQDVPNGYSFYIAHEFFDALPIHKLQKIKDGWREMLIDID 244


>sp|Q7M0R2|SGM_MICZI 16S rRNA (guanine(1405)-N(7))-methyltransferase OS=Micromonospora
           zionensis GN=sgm PE=1 SV=1
          Length = 274

 Score = 36.2 bits (82), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 12/105 (11%)

Query: 101 DAAD--KIKALLVDYDSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRI---- 154
           DA D   ++A L+   S+H+   +RL    + Y   R LF HL R      + C +    
Sbjct: 84  DAGDDEAVRAALLRAMSVHISTRERLPHLDEFY---RELFRHLPRPNTLRDLACGLNPLA 140

Query: 155 KNWVP-PGRTLFIASN--ERTPGFFSPLAVRYNLAYSSNFSDILD 196
             W+  P  T++IAS+   R  GF      R N+ + +N +D+L+
Sbjct: 141 APWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLE 185


>sp|Q5BKM6|NDUF7_XENTR NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
           OS=Xenopus tropicalis GN=ndufaf7 PE=2 SV=1
          Length = 430

 Score = 34.7 bits (78), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 62  INRTASPLSWFMECKDRKNHSALMLPHSFLPSMAAEKLRDAADKIKALLVDYD 114
           I +T  P+ W+ + +D     +  + H F  ++   KL+   D  + +L+D D
Sbjct: 189 ITKTGFPVCWYQDIQDVPTGFSFYIAHEFFDALPIHKLQKTKDGWREILIDID 241


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,219,479
Number of Sequences: 539616
Number of extensions: 3841883
Number of successful extensions: 8856
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8852
Number of HSP's gapped (non-prelim): 9
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)