Query 025301
Match_columns 255
No_of_seqs 68 out of 70
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 07:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.4 7.7E-14 2.6E-18 129.0 3.2 117 95-226 221-367 (408)
2 3zy2_A Putative GDP-fucose pro 98.4 2.6E-07 9E-12 87.1 6.9 115 94-226 192-335 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.7 2.7E-05 9.2E-10 75.9 5.0 123 95-226 276-408 (526)
4 2hhc_A NODZ, nodulation fucosy 96.5 0.004 1.4E-07 55.3 6.5 118 96-222 151-285 (330)
5 3u43_A Colicin-E2 immunity pro 26.2 30 0.001 26.8 1.9 31 117-159 46-76 (94)
6 1fr2_A Colicin E9 immunity pro 24.2 37 0.0013 25.8 2.0 32 117-160 46-77 (86)
7 1gxg_A Colicin E8 immunity pro 24.2 36 0.0012 25.8 1.9 31 117-159 45-75 (85)
8 4ayb_H DNA-directed RNA polyme 22.7 90 0.0031 23.5 3.9 43 12-76 40-82 (84)
9 1unk_A Colicin E7; immunity pr 20.8 48 0.0016 25.5 2.0 31 117-159 47-77 (87)
10 3dxy_A TRNA (guanine-N(7)-)-me 20.7 49 0.0017 27.2 2.3 25 148-172 130-154 (218)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.40 E-value=7.7e-14 Score=129.01 Aligned_cols=117 Identities=19% Similarity=0.245 Sum_probs=88.9
Q ss_pred cchhHHHHHHHHHHHh----------------------------CCccEEEEeeCccccccccccccccccCCCCCCCCC
Q 025301 95 AAEKLRDAADKIKALL----------------------------VDYDSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTR 146 (255)
Q Consensus 95 ~a~~L~~~v~~I~~~l----------------------------gdfDavHVRRGD~~~~~k~r~~v~r~l~P~ld~dts 146 (255)
.++.|+++|++.+... |.|.|+|+||||++..++ ...| +
T Consensus 221 ~s~~l~~~a~~fi~~~L~~~~~~~h~r~~~dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~-------~~~p------s 287 (408)
T 4ap5_A 221 FARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHR-------QDVP------S 287 (408)
T ss_dssp BCHHHHHHHHHHHHHHHCCCTTTTTCCCCSSGGGCCCCTTCBCCEEEEEEEECCTTTTTTTC-------SSSC------C
T ss_pred hhHHHHHHHHHHHHHHhCcccceeecccchhHhhhhcccccccCCCccccccccccchhhhh-------ccCC------C
Confidence 5889999998877632 379999999999986653 3334 3
Q ss_pred hHHHHHhhhcccC--CCcEEEEecCCCCCCCCchhhhhcceeeccchHHhhcccCcchhhHHHHHHHHHhCCceeEeecc
Q 025301 147 PEAILCRIKNWVP--PGRTLFIASNERTPGFFSPLAVRYNLAYSSNFSDILDLVVENNYQLFMVERLILMGARTFIKTYK 224 (255)
Q Consensus 147 pe~i~~~~~~~v~--~gr~LYIATdE~~~~fF~pL~~~y~v~~LdDF~~l~~~~~~N~Y~l~mVD~lV~srgktfvgTf~ 224 (255)
.+.+++.|++.+. ..+.||||||+.+..+++..+...++.++.++.+.++..+++.+. ||||+|++||+.||||..
T Consensus 288 ~~~~~~~i~~~~~~~~~~~VyiATD~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~a--~idq~Ic~~a~~FiGt~~ 365 (408)
T 4ap5_A 288 LEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDGGVA--IIDQWICAHARFFIGTSV 365 (408)
T ss_dssp HHHHHHHHHHHHHHHTCSCEEEEECCCHHHHHHHHHHCTTEECCCCCHHHHHHHHHHHHH--HHHHHHHHTEEEEEBCTT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHhCCCcEEecCcchhhhccCcchhh--HHHHHHHHhCCeeEeCCc
Confidence 4455555555443 468899999998776666555556777778888877777666654 999999999999999999
Q ss_pred cc
Q 025301 225 ED 226 (255)
Q Consensus 225 ~~ 226 (255)
|.
T Consensus 366 St 367 (408)
T 4ap5_A 366 ST 367 (408)
T ss_dssp CH
T ss_pred Cc
Confidence 87
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.43 E-value=2.6e-07 Score=87.13 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=78.5
Q ss_pred ccchhHHHHHHH-HHHHhC-CccEEEEeeC-ccccccccccccccccCCCCCC-----------C--------CChHHHH
Q 025301 94 MAAEKLRDAADK-IKALLV-DYDSIHVRRG-DRLKTRKDRYGVDRSLFPHLDR-----------D--------TRPEAIL 151 (255)
Q Consensus 94 ~~a~~L~~~v~~-I~~~lg-dfDavHVRRG-D~~~~~k~r~~v~r~l~P~ld~-----------d--------tspe~i~ 151 (255)
-+|+.+...|++ |.+-|+ .|-|||.||| |....-. .+.-.--|++=. . -|.+.|+
T Consensus 192 ~WS~~i~~~a~~fI~~~L~rpyVgIHLR~G~DW~~aC~---hlk~~~~~~lfaSPQC~Gy~~~~~~lt~emClPSle~I~ 268 (362)
T 3zy2_A 192 RWSSRITEQAKKFISANLAKPFVAVHLRNDADWVRVCE---HIDTTTNRPLFASEQCLGEGHHLGTLTKEICSPSKQQIL 268 (362)
T ss_dssp CBCHHHHHHHHHHHHHHCCSSEEEEEECCCHHHHHHHH---TCCTTTCCCCTTTHHHHCGGGTTCCCCHHHHSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCeEEEEEecCCcHHHHHh---hhccccCcccccCCcccCCcccCcccchhccCCCHHHHH
Confidence 378899999999 556587 9999999999 7752110 000000122110 0 1467788
Q ss_pred HhhhcccC--CCcEEEEecCCCCCCCCchhhhhcc-----eeeccchHHhhcccCcchhhHHHHHHHHHhCCceeEeecc
Q 025301 152 CRIKNWVP--PGRTLFIASNERTPGFFSPLAVRYN-----LAYSSNFSDILDLVVENNYQLFMVERLILMGARTFIKTYK 224 (255)
Q Consensus 152 ~~~~~~v~--~gr~LYIATdE~~~~fF~pL~~~y~-----v~~LdDF~~l~~~~~~N~Y~l~mVD~lV~srgktfvgTf~ 224 (255)
+.|+.++. .-+.||||||... +.+.|++.++ |+-++ ++ .++||+.|++++..|||+-.
T Consensus 269 rqIk~~vk~~~lksVFIATDa~~--~~~ELk~~L~~~~v~vv~~~----------pe---~a~ID~~I~~~A~~FIGN~~ 333 (362)
T 3zy2_A 269 EQIVEKVGSIGAKSVFVASDKDH--MIDEINEALKPYEIEAHRQE----------PD---DMYTSLAIMGRADLFVGNCV 333 (362)
T ss_dssp HHHHHHHHHHTCSEEEEEESSCC--CHHHHHHHHGGGTCCEECCS----------SC---CHHHHHHHHHHSSEEEECTT
T ss_pred HHHHHHHHhcCCcEEEEecCCHH--HHHHHHHHhhccCceEEEeC----------Cc---hhHHHHHHHHhCCEeecCcc
Confidence 88887665 5799999999764 7888887543 33222 12 56999999999999999987
Q ss_pred cc
Q 025301 225 ED 226 (255)
Q Consensus 225 ~~ 226 (255)
|.
T Consensus 334 SS 335 (362)
T 3zy2_A 334 ST 335 (362)
T ss_dssp CH
T ss_pred cc
Confidence 76
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.70 E-value=2.7e-05 Score=75.86 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=72.7
Q ss_pred cchhHHHHHHHHHHHhC---CccEEEEeeCccccccccccccccccCCCCCCCCChHHHHHhhhc-ccCCCcEEEEecCC
Q 025301 95 AAEKLRDAADKIKALLV---DYDSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKN-WVPPGRTLFIASNE 170 (255)
Q Consensus 95 ~a~~L~~~v~~I~~~lg---dfDavHVRRGD~~~~~k~r~~v~r~l~P~ld~dtspe~i~~~~~~-~v~~gr~LYIATdE 170 (255)
.++.+.+.+++..+.+| -.-+|||||||+.... ...+|..+--...+.+++.+.. .-+....+|||||.
T Consensus 276 P~~~i~~~I~~~~~~l~~~~piVGVHIRrGDk~~~E-------~~~~~~~~Y~~~v~~~~~~l~~~~~~~~~~ifLATDD 348 (526)
T 2de0_X 276 PQPWLEKEIEEATKKLGFKHPVIGVHVRRTDKVGTE-------AAFHPIEEYMVHVEEHFQLLARRMQVDKKRVYLATDD 348 (526)
T ss_dssp BCHHHHHHHHHHHHHHTCCSSEEEEEECCC-----C-------CCSCSHHHHHHHHHHHHHHHHTTSCCSSCEEEEEESC
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCCccc-------cccCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEcCC
Confidence 35667777888887763 7899999999995322 1334321100013444444443 34678999999995
Q ss_pred CCCCCCchhhhhcce-eeccc--hHHhhc---ccCcchhhHHHHHHHHHhCCceeEeecccc
Q 025301 171 RTPGFFSPLAVRYNL-AYSSN--FSDILD---LVVENNYQLFMVERLILMGARTFIKTYKED 226 (255)
Q Consensus 171 ~~~~fF~pL~~~y~v-~~LdD--F~~l~~---~~~~N~Y~l~mVD~lV~srgktfvgTf~~~ 226 (255)
+ ..++.++++|.- .+..| +..-++ ..+.++.--.++|-.+++++..||||+.|.
T Consensus 349 p--~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~sS~ 408 (526)
T 2de0_X 349 P--SLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSSQ 408 (526)
T ss_dssp H--HHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEEEECTTSH
T ss_pred H--HHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCeeecCCCCH
Confidence 4 458888765531 12222 100011 122344455689999999999999999876
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=96.52 E-value=0.004 Score=55.31 Aligned_cols=118 Identities=9% Similarity=0.085 Sum_probs=63.0
Q ss_pred chhHHHHHHHHHHHh--C-CccEEEEeeCccccccccccccccccCCCCCCCCChHHHHHhhhccc---C-CCcEEEEec
Q 025301 96 AEKLRDAADKIKALL--V-DYDSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWV---P-PGRTLFIAS 168 (255)
Q Consensus 96 a~~L~~~v~~I~~~l--g-dfDavHVRRGD~~~~~k~r~~v~r~l~P~ld~dtspe~i~~~~~~~v---~-~gr~LYIAT 168 (255)
++.+.+.++++...+ | .+-||||||||....-.. +. -|... ...-+.+++.++... + ....+||||
T Consensus 151 ~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~~~~~~--~~---~~~~~--~~~l~~~~~~i~~~~~~~~~~~~~vfvaS 223 (330)
T 2hhc_A 151 RSEIRARIDALYEEHFSGHSIIGVHVRHGNGEDIMEH--AP---YWADS--ELALHQVCMAIRKAKALSYPKPVKVFLCT 223 (330)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEEEECC-----------------CHHH--HHHHHHHHHHHHHHHTSCCSSCEEEEEEE
T ss_pred cHHHHHHHHHHHHHhccCCceEEEEEecCCCCccccc--Cc---chHHH--hHHHHHHHHHHHHHHhccCcCceEEEEEe
Confidence 455666666666443 3 688999999995321100 00 00000 001345555554432 2 358999999
Q ss_pred CCCCCCCCchhhhhcceeeccchHHhh---ccc-----CcchhhHHHHHHHHHhCCceeE--ee
Q 025301 169 NERTPGFFSPLAVRYNLAYSSNFSDIL---DLV-----VENNYQLFMVERLILMGARTFI--KT 222 (255)
Q Consensus 169 dE~~~~fF~pL~~~y~v~~LdDF~~l~---~~~-----~~N~Y~l~mVD~lV~srgktfv--gT 222 (255)
|.+ .+.+.|++.|.-.+..+..-.. .++ +.++-..+.+|-..+|+++.+| +.
T Consensus 224 Dd~--~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm~LLS~cd~~I~~~~ 285 (330)
T 2hhc_A 224 DSA--QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMYLLARCATVIRFPP 285 (330)
T ss_dssp SCH--HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred CCH--HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHHHHHHcCCeeEECCC
Confidence 986 4888999888543332211000 001 1234556789999999999998 64
No 5
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=26.24 E-value=30 Score=26.85 Aligned_cols=31 Identities=35% Similarity=0.704 Sum_probs=24.9
Q ss_pred EEeeCccccccccccccccccCCCCCCCCChHHHHHhhhcccC
Q 025301 117 HVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWVP 159 (255)
Q Consensus 117 HVRRGD~~~~~k~r~~v~r~l~P~ld~dtspe~i~~~~~~~v~ 159 (255)
|-...|++ .||.-+++-|||.|+..+++|=.
T Consensus 46 HP~gSDLI------------fyP~~~~e~SPEgIv~~IKeWRa 76 (94)
T 3u43_A 46 HPDGSDLI------------YYPRDDREDSPEGIVKEIKEWRA 76 (94)
T ss_dssp CTTTTHHH------------HSCCTTSCSSHHHHHHHHHHHHH
T ss_pred CCCccCee------------eeCCCCCCCCHHHHHHHHHHHHH
Confidence 55567776 57888889999999999999743
No 6
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=24.21 E-value=37 Score=25.84 Aligned_cols=32 Identities=25% Similarity=0.578 Sum_probs=25.5
Q ss_pred EEeeCccccccccccccccccCCCCCCCCChHHHHHhhhcccCC
Q 025301 117 HVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWVPP 160 (255)
Q Consensus 117 HVRRGD~~~~~k~r~~v~r~l~P~ld~dtspe~i~~~~~~~v~~ 160 (255)
|-...|++ .||.-+++-|||.|+..+++|=+.
T Consensus 46 HP~gSDLI------------fyP~~~~e~spE~Iv~~ik~wRa~ 77 (86)
T 1fr2_A 46 HPSGSDLI------------YYPKEGDDDSPSGIVNTVKQWRAA 77 (86)
T ss_dssp CTTTTHHH------------HSCCTTCCCSHHHHHHHHHHHHHH
T ss_pred CCCcCcee------------ecCCCCCCCCHHHHHHHHHHHHHH
Confidence 66667776 478888899999999999987543
No 7
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=24.18 E-value=36 Score=25.83 Aligned_cols=31 Identities=32% Similarity=0.656 Sum_probs=24.6
Q ss_pred EEeeCccccccccccccccccCCCCCCCCChHHHHHhhhcccC
Q 025301 117 HVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWVP 159 (255)
Q Consensus 117 HVRRGD~~~~~k~r~~v~r~l~P~ld~dtspe~i~~~~~~~v~ 159 (255)
|-...|++ .||.-+++-|||.|+..+++|=+
T Consensus 45 HP~gSDLI------------fyP~~~~e~spE~Iv~~ik~wRa 75 (85)
T 1gxg_A 45 HPSGSDLI------------YYPEGNNDGSPEAVIKEIKEWRA 75 (85)
T ss_dssp CTTTTHHH------------HSCCTTCCSSHHHHHHHHHHHHH
T ss_pred CCCcCcee------------ecCCCCCCCCHHHHHHHHHHHHH
Confidence 55567775 47887889999999999998744
No 8
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=22.67 E-value=90 Score=23.50 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=30.2
Q ss_pred cccceeecCChhHHHHHHhhhccccceeEEeeeccccccccccccccceeeeecCCCceeeeeee
Q 025301 12 ETVPVILDNSKIWYHVLMTSMKLGARGVAHVEGVSRVNLNDNRRYSNLLLINRTASPLSWFMECK 76 (255)
Q Consensus 12 ~~VpvI~~~s~~W~~~~~~~~k~g~~~~~~~~~vs~~~l~~~~~~~~~~lI~R~f~~~~WyrvCe 76 (255)
++.|-|..++-- .+++ ++.+|+++.+..-|+ ++|..-.||+|-
T Consensus 40 ~qLP~I~~~DPv-a~~~----g~k~GdVvkI~R~S~-----------------tag~~~~YR~vv 82 (84)
T 4ayb_H 40 EQLPWIRASDPV-ARSI----NAKPGDIIRIIRKSQ-----------------LYGEVVSYRYVI 82 (84)
T ss_dssp GGSCCEESSSHH-HHHH----TCCTTCEEEEEEEET-----------------TTEEEEEEEEEE
T ss_pred hHCCeecccCHh-HHhh----CCCCCCEEEEEEcCC-----------------CCCccEEEEEEe
Confidence 458999887776 5666 888998877665432 455566788883
No 9
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=20.80 E-value=48 Score=25.46 Aligned_cols=31 Identities=35% Similarity=0.674 Sum_probs=25.1
Q ss_pred EEeeCccccccccccccccccCCCCCCCCChHHHHHhhhcccC
Q 025301 117 HVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWVP 159 (255)
Q Consensus 117 HVRRGD~~~~~k~r~~v~r~l~P~ld~dtspe~i~~~~~~~v~ 159 (255)
|-...|++ .||.-+++-|||.|++.+++|=.
T Consensus 47 HP~gsDLI------------fYP~~~~edsPEgIv~~iKeWRa 77 (87)
T 1unk_A 47 HPDGTDLI------------YYPSDNRDDSPEGIVKEIKEWRA 77 (87)
T ss_dssp CTTTTHHH------------HSCCSSCCCSHHHHHHHHHHHHH
T ss_pred CCCCCCee------------eeCCCCCCCCHHHHHHHHHHHHH
Confidence 66777876 46777889999999999998743
No 10
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=20.72 E-value=49 Score=27.19 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=21.1
Q ss_pred HHHHHhhhcccCCCcEEEEecCCCC
Q 025301 148 EAILCRIKNWVPPGRTLFIASNERT 172 (255)
Q Consensus 148 e~i~~~~~~~v~~gr~LYIATdE~~ 172 (255)
.++++.+...+.||..|+|+||-.+
T Consensus 130 ~~~l~~~~r~LkpGG~l~i~td~~~ 154 (218)
T 3dxy_A 130 VPFAELVKSKLQLGGVFHMATDWEP 154 (218)
T ss_dssp HHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred HHHHHHHHHHcCCCcEEEEEeCCHH
Confidence 3588888888999999999999653
Done!