Query 025301
Match_columns 255
No_of_seqs 68 out of 70
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 07:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025301.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025301hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dzfa2 d.78.1.1 (A:144-215) E 40.3 20 0.0015 24.5 4.7 42 12-75 30-71 (72)
2 d1eika_ d.78.1.1 (A:) RNA poly 38.8 11 0.00078 26.3 3.0 44 12-77 34-77 (77)
3 d1yzha1 c.66.1.53 (A:8-211) tR 35.7 9.6 0.0007 30.0 2.6 22 148-169 126-147 (204)
4 d2fcaa1 c.66.1.53 (A:10-213) t 31.6 11 0.00077 29.7 2.2 24 148-171 124-147 (204)
5 d1hmja_ d.78.1.1 (A:) RNA poly 20.7 50 0.0037 22.1 3.8 44 12-77 23-66 (68)
6 d1gxha_ a.28.2.1 (A:) ImmE8 (I 17.9 12 0.00085 27.0 -0.1 31 117-159 45-75 (85)
7 d2e9xc2 d.344.1.4 (C:1001-1087 17.1 24 0.0018 25.3 1.5 22 2-23 17-41 (87)
8 d1pdoa_ c.54.1.1 (A:) IIA doma 17.0 46 0.0034 23.9 3.1 56 96-174 13-71 (129)
9 d1kpia_ c.66.1.18 (A:) CmaA2 { 16.5 1.8E+02 0.013 23.4 7.2 73 95-168 92-172 (291)
10 d1jiha1 d.240.1.1 (A:390-509) 16.0 42 0.0031 24.2 2.7 57 96-158 24-92 (120)
No 1
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.35 E-value=20 Score=24.45 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=30.7
Q ss_pred cccceeecCChhHHHHHHhhhccccceeEEeeeccccccccccccccceeeeecCCCceeeeee
Q 025301 12 ETVPVILDNSKIWYHVLMTSMKLGARGVAHVEGVSRVNLNDNRRYSNLLLINRTASPLSWFMEC 75 (255)
Q Consensus 12 ~~VpvI~~~s~~W~~~~~~~~k~g~~~~~~~~~vs~~~l~~~~~~~~~~lI~R~f~~~~WyrvC 75 (255)
++.|.|..++-- .+|+ ++.+|+++.+...|+ ++|...-||+|
T Consensus 30 ~qLP~I~~~DPv-a~~~----g~~~GdvikI~R~s~-----------------tag~~~~YR~~ 71 (72)
T d1dzfa2 30 SQLPRIQRADPV-ALYL----GLKRGEVVKIIRKSE-----------------TSGRYASYRIC 71 (72)
T ss_dssp GGSCEECTTCHH-HHHH----TCCTTCEEEEECTTC-----------------SSSTTCEEEEE
T ss_pred hHCCeecccCHh-hhhc----CCCCCCEEEEEEcCC-----------------CCCceeEEEEe
Confidence 558999877766 5555 899998887765432 56667788888
No 2
>d1eika_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=38.81 E-value=11 Score=26.26 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=30.7
Q ss_pred cccceeecCChhHHHHHHhhhccccceeEEeeeccccccccccccccceeeeecCCCceeeeeeec
Q 025301 12 ETVPVILDNSKIWYHVLMTSMKLGARGVAHVEGVSRVNLNDNRRYSNLLLINRTASPLSWFMECKD 77 (255)
Q Consensus 12 ~~VpvI~~~s~~W~~~~~~~~k~g~~~~~~~~~vs~~~l~~~~~~~~~~lI~R~f~~~~WyrvCe~ 77 (255)
++.|.|..++-- .+|+ ++..|+++.+...|+ ++|..-.||+|.+
T Consensus 34 ~qLP~I~~~DPv-a~~~----g~k~GdvvkI~R~S~-----------------tag~~~~YR~vv~ 77 (77)
T d1eika_ 34 EQLPKIKTTDPV-AKAI----GAKRGDIVKIIRKSP-----------------TAEEFVTYRLVQD 77 (77)
T ss_dssp TTSCCCBTTSHH-HHGG----GCCTTCEEEEEEEET-----------------TTEEEEEEEECBC
T ss_pred HHCCeecccCHh-hhhh----CCcCCcEEEEEEcCC-----------------CCCCceEEEEEeC
Confidence 458888876665 4555 888998887766542 4555678999864
No 3
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Probab=35.67 E-value=9.6 Score=30.01 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=20.1
Q ss_pred HHHHHhhhcccCCCcEEEEecC
Q 025301 148 EAILCRIKNWVPPGRTLFIASN 169 (255)
Q Consensus 148 e~i~~~~~~~v~~gr~LYIATd 169 (255)
++.++.+...+.||..|+||||
T Consensus 126 ~~~l~~~~~~LkpgG~l~i~TD 147 (204)
T d1yzha1 126 KTFLDTFKRILPENGEIHFKTD 147 (204)
T ss_dssp HHHHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHHHhCCCCcEEEEEEC
Confidence 6788888989999999999998
No 4
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}
Probab=31.59 E-value=11 Score=29.73 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=19.9
Q ss_pred HHHHHhhhcccCCCcEEEEecCCC
Q 025301 148 EAILCRIKNWVPPGRTLFIASNER 171 (255)
Q Consensus 148 e~i~~~~~~~v~~gr~LYIATdE~ 171 (255)
++.++.+...+.||..|+||||-.
T Consensus 124 ~~~l~~~~r~LkpgG~l~i~TD~~ 147 (204)
T d2fcaa1 124 SHFLKKYEEVMGKGGSIHFKTDNR 147 (204)
T ss_dssp HHHHHHHHHHHTTSCEEEEEESCH
T ss_pred HHHHHHHHHhCCCCcEEEEEECCh
Confidence 467888888899999999999643
No 5
>d1hmja_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=20.69 E-value=50 Score=22.05 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=30.5
Q ss_pred cccceeecCChhHHHHHHhhhccccceeEEeeeccccccccccccccceeeeecCCCceeeeeeec
Q 025301 12 ETVPVILDNSKIWYHVLMTSMKLGARGVAHVEGVSRVNLNDNRRYSNLLLINRTASPLSWFMECKD 77 (255)
Q Consensus 12 ~~VpvI~~~s~~W~~~~~~~~k~g~~~~~~~~~vs~~~l~~~~~~~~~~lI~R~f~~~~WyrvCe~ 77 (255)
++.|.|....-- ..|+ ++.+|+++.+...|+ ++|..--||+|-.
T Consensus 23 ~qLP~I~~~DPv-a~~~----g~k~GdvvkI~R~S~-----------------tag~~i~YR~vv~ 66 (68)
T d1hmja_ 23 QQLPKIYEDDPV-IQEI----GAKEGDVVRVIRKSP-----------------TAGVSIAYRLVIK 66 (68)
T ss_pred HHCCcccccCHH-HHHh----CCCCCcEEEEEEcCC-----------------CCCCceEEEEEEE
Confidence 457888776655 4555 889998887765442 5666778898853
No 6
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=17.86 E-value=12 Score=27.04 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=25.1
Q ss_pred EEeeCccccccccccccccccCCCCCCCCChHHHHHhhhcccC
Q 025301 117 HVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWVP 159 (255)
Q Consensus 117 HVRRGD~~~~~k~r~~v~r~l~P~ld~dtspe~i~~~~~~~v~ 159 (255)
|-..+|+++ +|.-+++-||+-|+..|++|=.
T Consensus 45 HP~gsDLIf------------YP~~~~edsPegIv~~IKeWRa 75 (85)
T d1gxha_ 45 HPSGSDLIY------------YPEGNNDGSPEAVIKEIKEWRA 75 (85)
T ss_dssp CTTTTHHHH------------SCCSSCSSCTHHHHHHHHHHHH
T ss_pred CCCCCceee------------eCCCCCCCCHHHHHHHHHHHHH
Confidence 777788874 5777888999999999998743
No 7
>d2e9xc2 d.344.1.4 (C:1001-1087) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.09 E-value=24 Score=25.29 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=18.3
Q ss_pred ccccchHhhc---cccceeecCChh
Q 025301 2 DSLYDLELIS---ETVPVILDNSKI 23 (255)
Q Consensus 2 ~~~yD~~~i~---~~VpvI~~~s~~ 23 (255)
++||||+.|- +.||+.+.....
T Consensus 17 ~nYydIDDILa~~EkvPc~f~~~~p 41 (87)
T d2e9xc2 17 ENFLSLDDILMSHEKLPVRTETAMP 41 (87)
T ss_dssp CCTTCHHHHHHTTSEEEEEESSCBT
T ss_pred ccccCHHHHhhcCCcccEEEEecCc
Confidence 6899999985 559999987766
No 8
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=17.00 E-value=46 Score=23.86 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=35.2
Q ss_pred chhHHHHHHHHHHHhCCccEEEEeeCccccccccccccccccCCCCCCCCChHHHHHhhhccc---CCCcEEEEecCCCC
Q 025301 96 AEKLRDAADKIKALLVDYDSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWV---PPGRTLFIASNERT 172 (255)
Q Consensus 96 a~~L~~~v~~I~~~lgdfDavHVRRGD~~~~~k~r~~v~r~l~P~ld~dtspe~i~~~~~~~v---~~gr~LYIATdE~~ 172 (255)
|.-|.+.|+-|.+...++.++....|+ +++++.+++++.+ +++..+.|-||=..
T Consensus 13 A~gl~~s~~~i~G~~~~i~~i~~~~~~-----------------------~~~~~~~~~~~~i~~~~~~~~vliltDl~G 69 (129)
T d1pdoa_ 13 AEQLLKTAEMLLGEQENVGWIDFVPGE-----------------------NAETLIEKYNAQLAKLDTTKGVLFLVDTWG 69 (129)
T ss_dssp HHHHHHHHHHHHCCCSSEEEECBCTTC-----------------------CHHHHHHHHHHHHTTSCCTTCEEEEESSTT
T ss_pred HHHHHHHHHHHhCCCCCeEEEEccCCC-----------------------CHHHHHHHHHHHHHhcCCCCCEEEEEeccc
Confidence 556677777776555555555544444 4666666655444 66788999999644
Q ss_pred CC
Q 025301 173 PG 174 (255)
Q Consensus 173 ~~ 174 (255)
=+
T Consensus 70 Gs 71 (129)
T d1pdoa_ 70 GS 71 (129)
T ss_dssp SH
T ss_pred cc
Confidence 43
No 9
>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.49 E-value=1.8e+02 Score=23.43 Aligned_cols=73 Identities=11% Similarity=0.113 Sum_probs=50.6
Q ss_pred cchhHHHHHHHHHHHhCCccEEEEeeCccccccccccc--cccccCCCCCCCCC------hHHHHHhhhcccCCCcEEEE
Q 025301 95 AAEKLRDAADKIKALLVDYDSIHVRRGDRLKTRKDRYG--VDRSLFPHLDRDTR------PEAILCRIKNWVPPGRTLFI 166 (255)
Q Consensus 95 ~a~~L~~~v~~I~~~lgdfDavHVRRGD~~~~~k~r~~--v~r~l~P~ld~dts------pe~i~~~~~~~v~~gr~LYI 166 (255)
-|+.-.+.|++.+...|-=+.++++.+|.... ..+|- |.-.++.|+-.... =+..++++..++.||..++|
T Consensus 92 ~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l 170 (291)
T d1kpia_ 92 LSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLL 170 (291)
T ss_dssp SCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEE
T ss_pred chHHHHHHHHHHHHhhccchhhhhhhhccccc-ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEE
Confidence 45555667777777888667899999887532 13341 22356777654332 26899999999999999998
Q ss_pred ec
Q 025301 167 AS 168 (255)
Q Consensus 167 AT 168 (255)
.|
T Consensus 171 ~~ 172 (291)
T d1kpia_ 171 HT 172 (291)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 10
>d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.02 E-value=42 Score=24.17 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=37.5
Q ss_pred chhHHHHHHHHHHHhCCc-c-----------EEEEeeCccccccccccccccccCCCCCCCCChHHHHHhhhccc
Q 025301 96 AEKLRDAADKIKALLVDY-D-----------SIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWV 158 (255)
Q Consensus 96 a~~L~~~v~~I~~~lgdf-D-----------avHVRRGD~~~~~k~r~~v~r~l~P~ld~dtspe~i~~~~~~~v 158 (255)
-.-|..+|..+.+||.+. + ++|+|-++++...|. ...|.-+.+..+++|++..++.+
T Consensus 24 ~~WL~~la~el~~RL~~~~~~~~~~~~~kTltl~~r~~~~~~~SRs------~~i~~~~~~~~~~~i~~~a~~LL 92 (120)
T d1jiha1 24 ISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRKS------GPVAYKGINFQSHELLKVGIKFV 92 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECTTCCEEEEE------EECCCSSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccEEEEEEEeCCCCEecce------eecCCCcccccHHHHHHHHHHHH
Confidence 356889999999999742 2 799999998643321 12355555666777776544433
Done!