BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025302
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VR3|A Chain A, Crystal Structure Of Acireductone Dioxygenase (13543033)
From Mus Musculus At 2.06 A Resolution
Length = 191
Score = 232 bits (592), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 109/167 (65%), Positives = 125/167 (74%)
Query: 12 IQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGY 71
+QAWY D+S D R PH P VSL+QL LGVL W+LDAD YE D EL+KIR+ R Y
Sbjct: 14 VQAWYXDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKXRNY 73
Query: 72 SYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKK 131
S+ D +C + LPNYEEKIK FFEEHLH DEEIRY + GSGYFDVRD+ +KWIRI +K
Sbjct: 74 SWXDIITICKDTLPNYEEKIKXFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISXEK 133
Query: 132 GGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPAR 178
G I LPAG YHRFTLD NY+KA RLFVG+PVWTP+NRP DH AR
Sbjct: 134 GDXITLPAGIYHRFTLDEKNYVKAXRLFVGEPVWTPYNRPADHFDAR 180
>pdb|1ZRR|A Chain A, Residual Dipolar Coupling Refinement Of Acireductone
Dioxygenase From Klebsiella
pdb|2HJI|A Chain A, Structural Model For The Fe-Containing Isoform Of
Acireductone Dioxygenase
Length = 179
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 62 LKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRN 121
+ K+ ++GY D + + P E + F EH H ++E+R+ V G+G F + +
Sbjct: 61 IDKLVAEKGYQSWDVISLRADN-PQKEALREKFLNEHTHGEDEVRFFVEGAGLFCLHIGD 119
Query: 122 EKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVW 165
E ++ +K +I +PA H F + ++ A+R+F W
Sbjct: 120 EV-FQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNPEGW 162
>pdb|3NST|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans
pdb|3NVC|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Salicylate
pdb|3NW4|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Gentisate
Length = 368
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 97 EHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151
EH H+ R+ V G G + V + + + + +G +++ P C+H DTD
Sbjct: 118 EHRHSQNAFRFVVEGEGVWTVVNGDP----VRMSRGDLLLTPGWCFHGHMNDTDQ 168
>pdb|2PHD|A Chain A, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|B Chain B, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|C Chain C, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|D Chain D, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|3NJZ|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Salicylate
pdb|3NKT|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Naphthoate
pdb|3NL1|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Gentisate
Length = 368
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 97 EHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151
EH H+ R+ V G G + V + + + + +G +++ P C+H DTD
Sbjct: 118 EHRHSQNAFRFVVEGEGVWTVVNGDP----VRMSRGDLLLTPGWCFHGHMNDTDQ 168
>pdb|4FAH|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans A85h Mutant
Length = 367
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 97 EHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151
EH H+ R+ V G G + V + + + + +G +++ P C+H DTD
Sbjct: 118 EHRHSQNAFRFVVEGEGVWTVVNGDP----VRMSRGDLLLTPGWCFHGHMNDTDQ 168
>pdb|4FAG|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant In
Complex With Gentisate
pdb|4FBF|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant
Length = 367
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 97 EHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151
EH H+ R+ V G G + V + + + + +G +++ P C+H DTD
Sbjct: 118 EHRHSQNAFRFVVEGEGVWTVVNGDP----VRMSRGDLLLTPGWCFHGHMNDTDQ 168
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 146 TLDTDNYIKAMRLFVGDPVWTPFNRPH--DHLPARDMFK 182
TLD + YI+ ++ V PV+ RPH DH+P+ +F+
Sbjct: 518 TLDKEMYIRWLQYGVFQPVY----RPHGQDHIPSEPVFQ 552
>pdb|1HN0|A Chain A, Crystal Structure Of Chondroitin Abc Lyase I From Proteus
Vulgaris At 1.9 Angstroms Resolution
Length = 1021
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 67 EDRGYSYMDFCEVCPEKLPNYEEKIK--NFFEEHLHTDEEIRYC------VAGSGYFDVR 118
+D Y YM F + PEK+ +K + N + L D+++ V G ++
Sbjct: 869 KDASYEYMVFLDATPEKMGEMAQKFRENNGLYQVLRKDKDVHIILDKLSNVTGYAFYQPA 928
Query: 119 DRNEKWIR 126
+KWI+
Sbjct: 929 SIEDKWIK 936
>pdb|3KD4|A Chain A, Crystal Structure Of A Putative Protease (Bdi_1141) From
Parabacteroides Distasonis Atcc 8503 At 2.00 A
Resolution
pdb|3KD4|B Chain B, Crystal Structure Of A Putative Protease (Bdi_1141) From
Parabacteroides Distasonis Atcc 8503 At 2.00 A
Resolution
Length = 506
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 63 KKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHL 99
K+++E +GY F + +K N +EK+ N +H+
Sbjct: 220 KRLKESQGYESKTFAQFLTDKSGNEQEKV-NIIRDHI 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,468,737
Number of Sequences: 62578
Number of extensions: 372125
Number of successful extensions: 968
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 20
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)