Query 025302
Match_columns 255
No_of_seqs 210 out of 686
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2107 Uncharacterized conser 100.0 1.3E-65 2.9E-70 439.9 12.2 177 11-187 1-178 (179)
2 PF03079 ARD: ARD/ARD' family; 100.0 1.6E-49 3.5E-54 337.7 11.9 155 13-167 1-157 (157)
3 COG1791 Uncharacterized conser 100.0 5.7E-47 1.2E-51 326.5 15.0 168 11-187 1-180 (181)
4 COG1917 Uncharacterized conser 98.8 2.4E-08 5.1E-13 80.5 7.9 62 95-161 56-118 (131)
5 PF07883 Cupin_2: Cupin domain 98.8 1.6E-08 3.4E-13 72.0 6.0 60 95-159 11-71 (71)
6 COG0662 {ManC} Mannose-6-phosp 98.7 3.9E-08 8.5E-13 80.0 7.5 60 95-159 49-109 (127)
7 smart00835 Cupin_1 Cupin. This 98.7 3.6E-07 7.8E-12 75.3 11.4 77 74-160 32-110 (146)
8 TIGR03037 anthran_nbaC 3-hydro 98.6 1E-07 2.2E-12 82.2 8.1 56 95-151 41-96 (159)
9 PRK04190 glucose-6-phosphate i 98.6 3.8E-07 8.2E-12 80.4 11.1 84 72-161 68-156 (191)
10 PRK13264 3-hydroxyanthranilate 98.6 1.9E-07 4E-12 81.9 7.7 55 95-150 47-101 (177)
11 PF00190 Cupin_1: Cupin; Inte 98.6 3.8E-07 8.3E-12 75.0 8.9 86 65-161 28-120 (144)
12 TIGR03214 ura-cupin putative a 98.5 3.9E-07 8.4E-12 82.9 8.0 60 97-162 195-254 (260)
13 TIGR03404 bicupin_oxalic bicup 98.5 1.2E-06 2.6E-11 83.7 11.0 68 95-162 258-326 (367)
14 PF02311 AraC_binding: AraC-li 98.4 6.6E-07 1.4E-11 68.5 6.6 61 94-159 15-75 (136)
15 COG2140 Thermophilic glucose-6 98.2 6.3E-06 1.4E-10 74.0 8.9 68 96-163 94-164 (209)
16 PF06560 GPI: Glucose-6-phosph 98.2 9.3E-06 2E-10 71.5 8.5 92 64-162 43-147 (182)
17 TIGR03404 bicupin_oxalic bicup 98.1 1.2E-05 2.6E-10 76.8 9.1 66 95-161 80-145 (367)
18 PRK09943 DNA-binding transcrip 98.1 1.1E-05 2.3E-10 69.0 7.8 61 95-160 121-181 (185)
19 PRK13290 ectC L-ectoine syntha 98.1 1.3E-05 2.8E-10 66.1 7.5 60 95-160 48-108 (125)
20 PRK11171 hypothetical protein; 98.0 3.1E-05 6.8E-10 70.6 9.3 58 98-161 201-258 (266)
21 PLN00212 glutelin; Provisional 98.0 2.9E-05 6.3E-10 77.3 9.3 68 93-160 91-183 (493)
22 PRK13500 transcriptional activ 97.9 1.8E-05 3.9E-10 72.5 6.6 66 76-153 49-114 (312)
23 PRK13501 transcriptional activ 97.9 3E-05 6.4E-10 69.6 6.3 51 95-150 31-81 (290)
24 PRK13502 transcriptional activ 97.8 4.5E-05 9.8E-10 67.7 7.1 52 95-151 31-82 (282)
25 PF02041 Auxin_BP: Auxin bindi 97.8 6.2E-05 1.3E-09 65.2 7.5 74 96-169 58-136 (167)
26 PRK10296 DNA-binding transcrip 97.8 5.7E-05 1.2E-09 67.1 7.2 49 94-147 35-83 (278)
27 PRK13503 transcriptional activ 97.8 3.3E-05 7.2E-10 68.0 5.1 52 94-150 27-78 (278)
28 PRK10371 DNA-binding transcrip 97.7 7.2E-05 1.6E-09 68.6 6.5 51 95-150 39-89 (302)
29 TIGR01479 GMP_PMI mannose-1-ph 97.7 0.00012 2.5E-09 71.7 7.8 62 96-162 390-452 (468)
30 TIGR02297 HpaA 4-hydroxyphenyl 97.6 0.00013 2.8E-09 64.7 6.7 58 95-157 36-94 (287)
31 PRK15457 ethanolamine utilizat 97.6 0.00013 2.8E-09 66.7 6.7 61 98-166 171-231 (233)
32 COG4297 Uncharacterized protei 97.5 0.00043 9.4E-09 59.5 8.3 108 59-185 34-144 (163)
33 PRK15460 cpsB mannose-1-phosph 97.5 0.00054 1.2E-08 67.9 9.2 61 96-161 399-460 (478)
34 COG4101 Predicted mannose-6-ph 97.4 0.00068 1.5E-08 57.2 7.7 73 72-156 46-119 (142)
35 TIGR02451 anti_sig_ChrR anti-s 97.4 0.00078 1.7E-08 60.0 8.7 72 72-162 127-198 (215)
36 PF01050 MannoseP_isomer: Mann 97.3 0.0013 2.9E-08 56.0 8.4 77 68-160 60-137 (151)
37 PRK11171 hypothetical protein; 97.3 0.00098 2.1E-08 60.9 7.7 51 101-156 82-132 (266)
38 TIGR03214 ura-cupin putative a 97.2 0.0012 2.5E-08 60.4 7.7 54 97-155 74-128 (260)
39 PF12973 Cupin_7: ChrR Cupin-l 97.2 0.0006 1.3E-08 52.2 4.9 59 73-150 25-83 (91)
40 PLN00212 glutelin; Provisional 97.2 0.0028 6E-08 63.4 10.6 68 94-162 360-429 (493)
41 COG3837 Uncharacterized conser 97.1 0.0012 2.6E-08 57.4 6.5 62 97-163 58-122 (161)
42 COG3435 Gentisate 1,2-dioxygen 97.1 0.00048 1E-08 65.5 4.4 80 95-178 105-198 (351)
43 PF05899 Cupin_3: Protein of u 97.0 0.0011 2.5E-08 49.6 4.2 48 95-147 19-66 (74)
44 TIGR02272 gentisate_1_2 gentis 96.9 0.0025 5.4E-08 60.9 7.0 54 95-152 94-147 (335)
45 TIGR02272 gentisate_1_2 gentis 96.7 0.011 2.4E-07 56.6 9.9 87 59-150 215-313 (335)
46 PF06052 3-HAO: 3-hydroxyanthr 96.5 0.0095 2.1E-07 51.5 7.3 53 96-149 47-99 (151)
47 PF05523 FdtA: WxcM-like, C-te 96.4 0.019 4E-07 47.6 7.9 56 95-151 46-103 (131)
48 COG4766 EutQ Ethanolamine util 96.3 0.013 2.8E-07 51.3 6.5 85 73-166 88-174 (176)
49 PF12852 Cupin_6: Cupin 96.2 0.0097 2.1E-07 50.4 5.6 43 104-149 37-79 (186)
50 PF06249 EutQ: Ethanolamine ut 95.9 0.011 2.4E-07 51.0 4.5 43 101-148 94-136 (152)
51 PRK10572 DNA-binding transcrip 95.9 0.019 4.2E-07 51.3 6.2 51 95-150 42-92 (290)
52 COG3450 Predicted enzyme of th 95.7 0.016 3.4E-07 48.1 4.4 58 70-144 43-101 (116)
53 PF04209 HgmA: homogentisate 1 95.1 0.037 8.1E-07 54.6 5.7 60 93-159 139-198 (424)
54 TIGR01015 hmgA homogentisate 1 94.4 0.12 2.6E-06 51.2 7.2 56 100-160 146-201 (429)
55 PF02373 JmjC: JmjC domain, hy 94.1 0.09 1.9E-06 40.4 4.4 26 121-146 77-102 (114)
56 PRK05341 homogentisate 1,2-dio 94.0 0.11 2.3E-06 51.7 5.8 45 100-149 152-196 (438)
57 COG3257 GlxB Uncharacterized p 93.4 0.2 4.4E-06 46.3 6.1 57 99-161 200-256 (264)
58 PLN02658 homogentisate 1,2-dio 93.1 0.29 6.3E-06 48.7 7.1 55 100-159 145-200 (435)
59 PRK09685 DNA-binding transcrip 92.1 0.45 9.7E-06 42.6 6.5 43 104-151 73-115 (302)
60 PF14499 DUF4437: Domain of un 92.0 0.19 4.1E-06 46.6 4.1 50 96-150 50-99 (251)
61 KOG3995 3-hydroxyanthranilate 91.3 0.3 6.6E-06 45.0 4.5 49 96-145 47-95 (279)
62 PF13621 Cupin_8: Cupin-like d 90.5 0.64 1.4E-05 39.8 5.6 39 123-161 207-247 (251)
63 PF11699 CENP-C_C: Mif2/CENP-C 90.1 1 2.2E-05 35.3 6.0 67 71-151 11-77 (85)
64 PF06339 Ectoine_synth: Ectoin 90.0 1.4 3E-05 37.3 7.0 55 103-162 56-110 (126)
65 PF14525 AraC_binding_2: AraC- 89.8 1.1 2.4E-05 35.9 6.2 49 105-158 58-106 (172)
66 COG3435 Gentisate 1,2-dioxygen 87.6 0.95 2.1E-05 43.7 5.0 100 58-167 225-339 (351)
67 PRK12335 tellurite resistance 87.0 3.1 6.8E-05 37.9 7.9 77 87-163 16-96 (287)
68 PF02678 Pirin: Pirin; InterP 86.6 2.2 4.8E-05 34.5 6.0 62 94-159 41-106 (107)
69 PF08007 Cupin_4: Cupin superf 85.5 3 6.5E-05 39.1 7.1 55 95-149 128-200 (319)
70 PF00908 dTDP_sugar_isom: dTDP 84.2 6.8 0.00015 34.3 8.3 61 91-151 56-124 (176)
71 COG3257 GlxB Uncharacterized p 84.1 3.2 7E-05 38.6 6.4 43 103-150 84-126 (264)
72 PF04962 KduI: KduI/IolB famil 83.0 1.6 3.4E-05 40.4 4.1 48 95-143 166-227 (261)
73 COG3508 HmgA Homogentisate 1,2 82.1 4.3 9.3E-05 40.1 6.7 46 101-151 145-190 (427)
74 KOG2757 Mannose-6-phosphate is 80.0 3.9 8.5E-05 40.4 5.7 55 102-161 353-407 (411)
75 TIGR01221 rmlC dTDP-4-dehydror 78.2 16 0.00035 32.0 8.6 56 96-151 58-124 (176)
76 TIGR00218 manA mannose-6-phosp 78.0 1.1 2.5E-05 41.5 1.4 20 126-145 152-171 (302)
77 COG1482 ManA Phosphomannose is 77.7 1.5 3.3E-05 41.9 2.2 22 126-147 159-180 (312)
78 PF07385 DUF1498: Protein of u 75.6 7.7 0.00017 35.8 6.0 26 126-151 155-180 (225)
79 COG1898 RfbC dTDP-4-dehydrorha 72.8 24 0.00052 31.2 8.2 57 96-152 59-125 (173)
80 COG3822 ABC-type sugar transpo 71.7 4 8.7E-05 37.3 3.1 28 124-151 152-179 (225)
81 PF13759 2OG-FeII_Oxy_5: Putat 70.5 3.7 7.9E-05 31.8 2.4 25 123-147 64-88 (101)
82 COG1741 Pirin-related protein 68.1 15 0.00034 34.4 6.4 66 94-163 56-126 (276)
83 TIGR00218 manA mannose-6-phosp 67.3 12 0.00027 34.6 5.6 38 102-144 253-290 (302)
84 PRK15131 mannose-6-phosphate i 63.3 5.3 0.00012 39.0 2.4 23 126-148 238-260 (389)
85 cd00038 CAP_ED effector domain 62.7 31 0.00067 24.6 5.9 37 102-138 35-72 (115)
86 PRK15131 mannose-6-phosphate i 60.9 18 0.00038 35.4 5.5 39 102-145 339-377 (389)
87 PF14499 DUF4437: Domain of un 58.8 6.5 0.00014 36.6 2.0 61 95-158 184-244 (251)
88 KOG3706 Uncharacterized conser 56.6 7.5 0.00016 39.9 2.2 47 115-161 371-417 (629)
89 PF06172 Cupin_5: Cupin superf 53.9 62 0.0013 27.4 7.0 58 93-150 52-116 (139)
90 PRK13918 CRP/FNR family transc 53.6 52 0.0011 27.4 6.5 36 103-138 27-63 (202)
91 PF09313 DUF1971: Domain of un 52.5 40 0.00087 26.2 5.2 59 92-150 13-75 (82)
92 PF00027 cNMP_binding: Cyclic 52.4 48 0.0011 23.1 5.4 37 102-138 17-54 (91)
93 PRK10402 DNA-binding transcrip 51.7 1.3E+02 0.0028 26.1 8.9 37 102-138 49-86 (226)
94 PRK09391 fixK transcriptional 51.5 78 0.0017 27.6 7.5 46 102-147 56-102 (230)
95 PRK11753 DNA-binding transcrip 51.1 78 0.0017 26.5 7.2 37 102-138 38-75 (211)
96 smart00100 cNMP Cyclic nucleot 51.0 77 0.0017 22.5 6.3 38 102-139 35-73 (120)
97 PF06865 DUF1255: Protein of u 51.0 46 0.001 26.9 5.5 44 103-149 42-85 (94)
98 PRK15372 pathogenicity island 48.9 49 0.0011 31.5 6.1 103 103-216 55-162 (292)
99 PRK00924 5-keto-4-deoxyuronate 47.0 48 0.001 31.4 5.8 56 95-152 191-251 (276)
100 COG2850 Uncharacterized conser 46.1 8.7 0.00019 37.9 0.7 23 126-148 180-202 (383)
101 PRK10579 hypothetical protein; 45.3 74 0.0016 25.8 5.8 43 103-148 42-84 (94)
102 PF05726 Pirin_C: Pirin C-term 44.8 1.4E+02 0.0031 23.2 7.4 54 101-163 19-72 (104)
103 PRK09392 ftrB transcriptional 42.3 1.1E+02 0.0024 26.3 6.9 35 102-136 48-82 (236)
104 PRK14748 kdpF potassium-transp 41.8 17 0.00037 23.6 1.4 17 202-218 12-28 (29)
105 PRK15186 AraC family transcrip 41.8 41 0.00089 31.5 4.5 44 104-151 40-83 (291)
106 PLN02288 mannose-6-phosphate i 38.5 49 0.0011 32.6 4.6 40 100-142 352-391 (394)
107 COG1482 ManA Phosphomannose is 38.1 71 0.0015 30.8 5.5 80 62-148 205-301 (312)
108 KOG3416 Predicted nucleic acid 34.8 65 0.0014 27.7 4.2 56 101-167 34-93 (134)
109 PF06596 PsbX: Photosystem II 33.7 41 0.0009 23.2 2.3 19 196-214 4-23 (39)
110 PRK11161 fumarate/nitrate redu 32.8 1.8E+02 0.0039 24.9 6.8 36 102-137 55-91 (235)
111 KOG0301 Phospholipase A2-activ 31.2 7.1E+02 0.015 27.0 12.1 144 45-200 280-440 (745)
112 TIGR03697 NtcA_cyano global ni 30.1 1.1E+02 0.0024 25.0 4.9 35 103-137 12-47 (193)
113 PLN02868 acyl-CoA thioesterase 30.0 2E+02 0.0044 27.7 7.2 36 102-137 49-84 (413)
114 PRK10202 ebgC cryptic beta-D-g 28.4 2.8E+02 0.006 23.4 7.0 45 102-146 65-127 (149)
115 COG0664 Crp cAMP-binding prote 28.0 1.3E+02 0.0028 24.4 4.9 39 103-141 42-81 (214)
116 KOG2639 Sodium sulfate symport 26.9 40 0.00087 35.4 1.9 46 203-248 236-285 (685)
117 PLN02288 mannose-6-phosphate i 26.8 50 0.0011 32.6 2.5 24 126-149 252-275 (394)
118 PF13464 DUF4115: Domain of un 25.8 2.7E+02 0.0059 20.4 6.7 47 107-153 3-50 (77)
119 PF07653 SH3_2: Variant SH3 do 25.4 61 0.0013 22.3 2.1 34 127-168 16-49 (55)
120 PRK14750 kdpF potassium-transp 24.4 1.1E+02 0.0025 19.9 3.0 19 200-218 10-28 (29)
121 COG3123 Uncharacterized protei 24.0 1.5E+02 0.0033 24.0 4.3 42 102-146 41-82 (94)
122 cd00248 Mth938-like Mth938-lik 23.5 82 0.0018 25.2 2.8 27 111-145 6-32 (109)
123 TIGR01450 recC exodeoxyribonuc 23.5 78 0.0017 34.8 3.5 52 62-114 373-424 (1067)
124 PF06719 AraC_N: AraC-type tra 22.9 3.9E+02 0.0085 22.2 6.9 60 98-162 19-81 (155)
125 cd05793 S1_IF1A S1_IF1A: Trans 22.6 1.4E+02 0.0031 22.7 3.9 12 126-137 36-47 (77)
126 PF04773 FecR: FecR protein; 22.3 2.9E+02 0.0063 20.2 5.5 57 103-161 39-95 (98)
127 TIGR03805 beta_helix_1 paralle 21.7 44 0.00095 31.5 1.0 16 128-143 7-22 (314)
128 PF10983 DUF2793: Protein of u 21.2 2.2E+02 0.0048 22.4 4.8 42 130-172 29-75 (87)
129 smart00652 eIF1a eukaryotic tr 21.0 1.6E+02 0.0034 22.9 3.8 28 110-137 15-52 (83)
No 1
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=100.00 E-value=1.3e-65 Score=439.89 Aligned_cols=177 Identities=69% Similarity=1.276 Sum_probs=173.5
Q ss_pred ceeeEeecCC-CCCCCCCCCCCCCCcCCHhHHhhcCeEEEEeCCCCcCCHHHHHHHHHhcCCCeeeEEEECCCCCCChHH
Q 025302 11 VIQAWYMDDS-DEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEE 89 (255)
Q Consensus 11 m~~aw~~dd~-~~d~rlph~~~p~~~vs~~~L~~lGV~yw~~d~~~~e~~~~ld~L~~erGY~~~DvVtlsp~~~Pn~e~ 89 (255)
||||||||+. ++|||+|||.+|++.||+++|+++||+||++|+++++.+++|++|++++||+++|+++++|+++|||++
T Consensus 1 m~qaw~mdd~~~~D~RlPhh~~p~~~vs~d~L~~lGVly~kld~D~~e~~~~L~~lr~e~~~~~~d~~~~~~e~~~nfde 80 (179)
T KOG2107|consen 1 MMQAWYMDDSPCEDQRLPHHKDPKKEVSLDELARLGVLYWKLDADNYELDEELDRLREERGYSYMDICTVCPETLPNFDE 80 (179)
T ss_pred CeeEEEcCCCCcccccCCCCCCCcccCCHHHHHhhCcEEEEecCchHHHHHHHHHHHHHcCCceeeEEEEchhhcccHHH
Confidence 8999999996 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecCCCCeeecC
Q 025302 90 KIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFN 169 (255)
Q Consensus 90 k~~kF~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~~gWva~~ 169 (255)
|+++||+||+|+|||||||++|+|||||||++|+||||.|++||||++||||+||||+++++++||||||.++|.|+|+|
T Consensus 81 Kvk~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~vkamRlF~~~p~wta~n 160 (179)
T KOG2107|consen 81 KVKSFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNYVKAMRLFVGEPKWTAYN 160 (179)
T ss_pred HHHHHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHHHHHHHHhcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhhh
Q 025302 170 RPHDHLPARDMFKISCRR 187 (255)
Q Consensus 170 R~~D~~~~R~~Yl~~~~~ 187 (255)
||+|+.++|++||+.+..
T Consensus 161 R~~d~l~~r~~yl~~i~~ 178 (179)
T KOG2107|consen 161 RPHDELPARKQYLNFISQ 178 (179)
T ss_pred CccccchhHHHHHhhccc
Confidence 999999999999998764
No 2
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=100.00 E-value=1.6e-49 Score=337.73 Aligned_cols=155 Identities=58% Similarity=1.009 Sum_probs=134.1
Q ss_pred eeEeecCCC-CCCCCCCCCCCCCcCCHhHHhhcCeEEEEeCCCCcCCHHHHHHHHHhcCCCeeeE-EEECCCCCCChHHH
Q 025302 13 QAWYMDDSD-EDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDF-CEVCPEKLPNYEEK 90 (255)
Q Consensus 13 ~aw~~dd~~-~d~rlph~~~p~~~vs~~~L~~lGV~yw~~d~~~~e~~~~ld~L~~erGY~~~Dv-Vtlsp~~~Pn~e~k 90 (255)
||||||+.. +|+++||+++|++++|.++|+++||.+|+++.+..+..++++++.+.++|..+++ |...+..+||+++|
T Consensus 1 ~~~~~d~~~~~d~~~~~~~~p~~~~s~~~l~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~p~~~~~ 80 (157)
T PF03079_consen 1 RAWYYDEEDPGDQRLPHHSDPDKIVSLLQLAGLGVLYWKLDADDPEDAEELQIIRAYRNYIDRDIDVVSLHPDHPNYEAK 80 (157)
T ss_dssp EEEEB-S--S-STCCEEE-SCHHCHHHHHCCCTCEEEEE-SCGGTTS-HHHHHHHHCHCHHCCCCEEEESTTTSTCHHHH
T ss_pred CEEEECCCCcccCCCcccCCcccccCHHHhhCceEEEeecCCCccCCccHHHHHHHHcCCceEEEEEEecCCCCcchhHH
Confidence 699999976 7999999999999999999999999999999887777889999999999999886 44444446999999
Q ss_pred hhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecCCCCeee
Q 025302 91 IKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 167 (255)
Q Consensus 91 ~~kF~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~~gWva 167 (255)
+++||.||+|++||||||++|+|+|++|+.++.|+||.|++||||+|||||+|||+++++++++|||||++++||+|
T Consensus 81 ~~~f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~~~gWva 157 (157)
T PF03079_consen 81 LKKFFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKDEPGWVA 157 (157)
T ss_dssp HHHHCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESSCGGEES
T ss_pred hhhhheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=100.00 E-value=5.7e-47 Score=326.47 Aligned_cols=168 Identities=31% Similarity=0.518 Sum_probs=149.2
Q ss_pred ceeeEeecCCCCCCCCCCCCCCCCcCCHhHHhhcCeEE--EEeCCCCc----------CCHHHHHHHHHhcCCCeeeEEE
Q 025302 11 VIQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLS--WRLDADNY----------ETDEELKKIREDRGYSYMDFCE 78 (255)
Q Consensus 11 m~~aw~~dd~~~d~rlph~~~p~~~vs~~~L~~lGV~y--w~~d~~~~----------e~~~~ld~L~~erGY~~~DvVt 78 (255)
|++.+++|+. .-..+++++ +.+|+++||.| |...+... .++.++++|+++|||+++|+|+
T Consensus 1 Ms~l~I~d~~------~~~~~~dei--a~~l~~i~v~~e~we~~~~~~~~~~~~~i~~a~~~eid~l~~e~Gyk~~Dvvs 72 (181)
T COG1791 1 MSRLRIHDET------KIITNQDEI--APELSKIEVSFERWEATALIKHGAEKEHIIDAYETEIDRLIRERGYKNRDVVS 72 (181)
T ss_pred CceEEEecCc------ccccCHhHh--hhhcccceeEhhhhhhccccccCcchhhhHhhHHHHHHHHHHhhCCceeeEEE
Confidence 8899999887 111234555 47888899999 55333211 2678999999999999999999
Q ss_pred ECCCCCCChHHHhhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEE
Q 025302 79 VCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRL 158 (255)
Q Consensus 79 lsp~~~Pn~e~k~~kF~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRl 158 (255)
++|++ |++++++++|++||+|.+||||||++|+|+|++++.||+|++|.|++||||+||+||+|||+++++++|+|+||
T Consensus 73 v~~~~-pk~del~akF~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRl 151 (181)
T COG1791 73 VSPSN-PKLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRL 151 (181)
T ss_pred eCCCC-ccHHHHHHHHHHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEE
Confidence 99987 99999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ecCCCCeeecCCCCCCcHHHHHHHHHhhh
Q 025302 159 FVGDPVWTPFNRPHDHLPARDMFKISCRR 187 (255)
Q Consensus 159 F~~~~gWva~~R~~D~~~~R~~Yl~~~~~ 187 (255)
|+.++||+|++|..|..+.|++|+..+.+
T Consensus 152 F~~~~gWVa~ytg~di~~~~~~y~~~i~~ 180 (181)
T COG1791 152 FTEPEGWVAIYTGDDIADRFPKYIEEINQ 180 (181)
T ss_pred eeCCCCceeeecCchhHHHHHHHHHHhhc
Confidence 99999999999999999999999998764
No 4
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.78 E-value=2.4e-08 Score=80.45 Aligned_cols=62 Identities=23% Similarity=0.402 Sum_probs=51.0
Q ss_pred ccccccC-cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecC
Q 025302 95 FEEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (255)
Q Consensus 95 ~~EH~H~-ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~ 161 (255)
..+|+|+ .++..||++|++.|.+. . + ...+.+||+|++|+|+.||+...++..+..+-++..
T Consensus 56 ~~~H~hp~~~~~~~Vl~G~~~~~~~-g--~--~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~~~ 118 (131)
T COG1917 56 IPWHTHPLGEQTIYVLEGEGTVQLE-G--E--KKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLVFPL 118 (131)
T ss_pred cccccCCCcceEEEEEecEEEEEec-C--C--ceEecCCCEEEECCCCeeeeccCCCCceeEEEEeee
Confidence 6799998 78999999999999997 2 2 267999999999999999998877664455555544
No 5
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.78 E-value=1.6e-08 Score=72.01 Aligned_cols=60 Identities=27% Similarity=0.479 Sum_probs=52.0
Q ss_pred ccccccCcc-eEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEe
Q 025302 95 FEEHLHTDE-EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLF 159 (255)
Q Consensus 95 ~~EH~H~dd-EIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF 159 (255)
...|.|+.+ |+.||++|++.+.+. |+ +..+++||.+.+|+|+.|++....+..++.+-+|
T Consensus 11 ~~~h~H~~~~e~~~vl~G~~~~~~~---~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 11 IPPHRHPGEDEFFYVLSGEGTLTVD---GE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEEESSEEEEEEEEESEEEEEET---TE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred CCCEECCCCCEEEEEEECCEEEEEc---cE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 579999997 999999999999863 44 5789999999999999999988888788777665
No 6
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=3.9e-08 Score=80.05 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=49.0
Q ss_pred ccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEe
Q 025302 95 FEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLF 159 (255)
Q Consensus 95 ~~EH~H~d-dEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF 159 (255)
+.+|.|.. ||++||++|+|.+.++| + .+.+++||.+.||+|+.|++....+..++.+-+-
T Consensus 49 ~~~~~H~~~dE~~~Vl~G~g~v~~~~---~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~ 109 (127)
T COG0662 49 ISLHHHHHRDEHWYVLEGTGKVTIGG---E--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQ 109 (127)
T ss_pred cCcccccCcceEEEEEeeEEEEEECC---E--EEEecCCCEEEECCCCcEEEEcCCCcceEEEEEe
Confidence 35677766 99999999999999973 2 4789999999999999999988777666655443
No 7
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=98.66 E-value=3.6e-07 Score=75.28 Aligned_cols=77 Identities=23% Similarity=0.354 Sum_probs=60.7
Q ss_pred eeEEEECCCCCCChHHHhhccccccccC-cceEEEEEeceEEEEEEeCC-CcEEEEEEecCCEEEeCCCCcccceeCCCC
Q 025302 74 MDFCEVCPEKLPNYEEKIKNFFEEHLHT-DEEIRYCVAGSGYFDVRDRN-EKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (255)
Q Consensus 74 ~DvVtlsp~~~Pn~e~k~~kF~~EH~H~-ddEIryIleGsG~Fdvrd~d-d~wirI~ve~GDLIvVPAGt~HrFtl~~~~ 151 (255)
.-.+++.|.. +...|.|. .+|+.||++|++.+.+.+.+ ++.....+++||.+.+|+|+.|++....+.
T Consensus 32 ~~~~~i~pg~----------~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~ 101 (146)
T smart00835 32 AARVNLEPGG----------MLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDE 101 (146)
T ss_pred EEEEEecCCc----------CcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCC
Confidence 3555677664 36799997 58999999999999997653 456678999999999999999999876666
Q ss_pred cEEEEEEec
Q 025302 152 YIKAMRLFV 160 (255)
Q Consensus 152 ~vkAiRlF~ 160 (255)
.+..+-+..
T Consensus 102 ~~~~l~~~~ 110 (146)
T smart00835 102 NLEFVAFNT 110 (146)
T ss_pred CEEEEEEec
Confidence 677664333
No 8
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.64 E-value=1e-07 Score=82.24 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=48.0
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCC
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~ 151 (255)
+.+|.|+.||.+|+++|+....++|. ++.-.+.+++||+++||+|++|++...++.
T Consensus 41 ~d~H~~~tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~t 96 (159)
T TIGR03037 41 TDFHDDPGEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAGS 96 (159)
T ss_pred cccccCCCceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCCc
Confidence 57999999999999999999999864 443358999999999999999999875543
No 9
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.62 E-value=3.8e-07 Score=80.40 Aligned_cols=84 Identities=20% Similarity=0.320 Sum_probs=64.5
Q ss_pred CeeeEEEECCCCCCChHHHhhcccc--ccccC---cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccce
Q 025302 72 SYMDFCEVCPEKLPNYEEKIKNFFE--EHLHT---DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (255)
Q Consensus 72 ~~~DvVtlsp~~~Pn~e~k~~kF~~--EH~H~---ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFt 146 (255)
-..++.++.|.... +.|+. -|.|. ..|++||++|+|.+.+.+.++....+.+++||++.||+|..|++.
T Consensus 68 L~~g~t~l~PG~~g------~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 68 LNFGTTRLYPGKVG------DEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred eEEEEEEECCCcEe------cccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeE
Confidence 45688999987521 22222 36663 379999999999999987766666789999999999999999998
Q ss_pred eCCCCcEEEEEEecC
Q 025302 147 LDTDNYIKAMRLFVG 161 (255)
Q Consensus 147 l~~~~~vkAiRlF~~ 161 (255)
...+..++.+-++..
T Consensus 142 N~G~epl~fl~v~p~ 156 (191)
T PRK04190 142 NTGDEPLVFLACYPA 156 (191)
T ss_pred ECCCCCEEEEEEEcC
Confidence 777766776666544
No 10
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.57 E-value=1.9e-07 Score=81.95 Aligned_cols=55 Identities=24% Similarity=0.400 Sum_probs=47.4
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCC
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~ 150 (255)
+.+|.|+.||.+|+++|+....++| +++.-.+.+.+||+++||+|++|+....++
T Consensus 47 ~d~H~~~tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~~~ 101 (177)
T PRK13264 47 TDFHYDPGEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQREAG 101 (177)
T ss_pred cccccCCCceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccCCC
Confidence 5789999999999999999999986 444346899999999999999999976433
No 11
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.56 E-value=3.8e-07 Score=74.96 Aligned_cols=86 Identities=23% Similarity=0.315 Sum_probs=60.1
Q ss_pred HHHhcCCCeeeEEEECCCCCCChHHHhhccccccccCcceEEEEEeceEEEEEEeCCC-----cEEEE--EEecCCEEEe
Q 025302 65 IREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNE-----KWIRI--WVKKGGMIVL 137 (255)
Q Consensus 65 L~~erGY~~~DvVtlsp~~~Pn~e~k~~kF~~EH~H~ddEIryIleGsG~Fdvrd~dd-----~wirI--~ve~GDLIvV 137 (255)
+....++ ..-.+.+.|.+ +...|.|.-.|+.||++|+|++.+-+.++ +...- .+++||+++|
T Consensus 28 ~~~~~~~-~~~~~~i~pg~----------~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~v 96 (144)
T PF00190_consen 28 LLGLNGV-AVRRVLIEPGG----------LRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVV 96 (144)
T ss_dssp HHHHTTE-EEEEEEEETTE----------EEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE
T ss_pred eecccce-EEEeeehhcCC----------ccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceee
Confidence 3334444 33455567765 57899996699999999999999987654 23333 4999999999
Q ss_pred CCCCcccceeCCCCcEEEEEEecC
Q 025302 138 PAGCYHRFTLDTDNYIKAMRLFVG 161 (255)
Q Consensus 138 PAGt~HrFtl~~~~~vkAiRlF~~ 161 (255)
|+|..||...+.++....+.+|..
T Consensus 97 P~G~~h~~~n~~~~~~~~~~~f~~ 120 (144)
T PF00190_consen 97 PAGHPHWIINDGDDEALVLIIFDT 120 (144)
T ss_dssp -TT-EEEEEECSSSSEEEEEEEEE
T ss_pred ccceeEEEEcCCCCCCEEEEEEEC
Confidence 999999998887444444445433
No 12
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.49 E-value=3.9e-07 Score=82.92 Aligned_cols=60 Identities=20% Similarity=0.367 Sum_probs=51.5
Q ss_pred ccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecCC
Q 025302 97 EHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGD 162 (255)
Q Consensus 97 EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~ 162 (255)
-|+|.++|..|||+|+|.|.+ |++| ..+++||+|.+|||..||+..+.+..++.| ++|+-
T Consensus 195 ~~~H~~eh~~yiL~G~G~~~~---~g~~--~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l-~ykd~ 254 (260)
T TIGR03214 195 IETHVMEHGLYVLEGKGVYNL---DNNW--VPVEAGDYIWMGAYCPQACYAGGRGEFRYL-LYKDM 254 (260)
T ss_pred cccccceeEEEEEeceEEEEE---CCEE--EEecCCCEEEECCCCCEEEEecCCCcEEEE-EEccc
Confidence 488889999999999999977 4777 569999999999999999998877778876 77763
No 13
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.47 E-value=1.2e-06 Score=83.65 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=59.2
Q ss_pred ccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecCC
Q 025302 95 FEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGD 162 (255)
Q Consensus 95 ~~EH~H~d-dEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~ 162 (255)
...|.|.. +|+.||++|++.+.+.|.+++-....+++||++++|+|..|++....+..++.+-+|+.+
T Consensus 258 ~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~ 326 (367)
T TIGR03404 258 RELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKAD 326 (367)
T ss_pred cCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCC
Confidence 57899995 899999999999999776655555789999999999999999988777778999899884
No 14
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.42 E-value=6.6e-07 Score=68.46 Aligned_cols=61 Identities=23% Similarity=0.432 Sum_probs=43.5
Q ss_pred cccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEe
Q 025302 94 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLF 159 (255)
Q Consensus 94 F~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF 159 (255)
.+.+|.|+.-|+.||++|+|.+.++ ++ ...+++||++++|+|..|.+...++......-++
T Consensus 15 ~~~~h~h~~~~i~~v~~G~~~~~~~---~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 15 EFPPHWHDFYEIIYVLSGEGTLHID---GQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp SEEEETT-SEEEEEEEEE-EEEEET---TE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred ccCCEECCCEEEEEEeCCEEEEEEC---CE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 3688999999999999999999885 44 3679999999999999999998886444444343
No 15
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=98.22 E-value=6.3e-06 Score=74.04 Aligned_cols=68 Identities=26% Similarity=0.399 Sum_probs=58.9
Q ss_pred cccccCc-c--eEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecCCC
Q 025302 96 EEHLHTD-E--EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDP 163 (255)
Q Consensus 96 ~EH~H~d-d--EIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~~ 163 (255)
.-|.|.. | |+.|+++|+|.+-|.+.+++.+.+.+++||.|.||+|--|+-..+.+..+..+-+|....
T Consensus 94 ~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~ 164 (209)
T COG2140 94 ELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADA 164 (209)
T ss_pred ccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCC
Confidence 3488865 4 599999999999999888888899999999999999999999887777788888887653
No 16
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.16 E-value=9.3e-06 Score=71.46 Aligned_cols=92 Identities=21% Similarity=0.346 Sum_probs=56.8
Q ss_pred HHHHhcCCCeeeEEEECCCCCCChHHHhhccc--cccccCc-------ceEEEEEeceEEEEEEeCCC----cEEEEEEe
Q 025302 64 KIREDRGYSYMDFCEVCPEKLPNYEEKIKNFF--EEHLHTD-------EEIRYCVAGSGYFDVRDRNE----KWIRIWVK 130 (255)
Q Consensus 64 ~L~~erGY~~~DvVtlsp~~~Pn~e~k~~kF~--~EH~H~d-------dEIryIleGsG~Fdvrd~dd----~wirI~ve 130 (255)
++.++++..+ |+..+.|..+.+ .|+ +=|.|.. .|++++++|+|.|-+.+.++ +++.+.++
T Consensus 43 ~~~~~~~L~y-giTvi~Pg~vG~------E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~ 115 (182)
T PF06560_consen 43 EWLQKRNLRY-GITVIPPGKVGG------EYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAK 115 (182)
T ss_dssp -------EEE-EEEEE---EETT------EE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-
T ss_pred ccceeeeEEe-eeEEEcCcccCC------ccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeC
Confidence 4556677654 999999987542 232 2466654 89999999999999998877 78899999
Q ss_pred cCCEEEeCCCCcccceeCCCCcEEEEEEecCC
Q 025302 131 KGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGD 162 (255)
Q Consensus 131 ~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~ 162 (255)
+||+++||+|..|+-..+.+..+++.-++..+
T Consensus 116 ~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~~~ 147 (182)
T PF06560_consen 116 PGDVVYIPPGYAHRTINTGDEPLVFAAWVPRD 147 (182)
T ss_dssp TTEEEEE-TT-EEEEEE-SSS-EEEEEEEETT
T ss_pred CCCEEEECCCceEEEEECCCCcEEEEEEEecC
Confidence 99999999999999877777777777666544
No 17
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.11 E-value=1.2e-05 Score=76.85 Aligned_cols=66 Identities=23% Similarity=0.209 Sum_probs=54.3
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecC
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~ 161 (255)
...|.|..+|+.||++|++.+.+.|.+++.+.-.+++||++++|+|..|.+.... .....+-+|..
T Consensus 80 ~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~ 145 (367)
T TIGR03404 80 RELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDD 145 (367)
T ss_pred CCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCC
Confidence 4689998899999999999999987767766568999999999999999988764 33555555655
No 18
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.11 E-value=1.1e-05 Score=68.96 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=50.1
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEec
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFV 160 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~ 160 (255)
...|.|..+|+.||++|+..+.+. |+ ...+++||.+.+|+|+.|++....+...+++-++.
T Consensus 121 ~~~~~h~~~E~~~Vl~G~~~~~~~---~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~ 181 (185)
T PRK09943 121 GERIKHQGEEIGTVLEGEIVLTIN---GQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHT 181 (185)
T ss_pred ccccccCCcEEEEEEEeEEEEEEC---CE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeC
Confidence 346778889999999999999885 33 36799999999999999999876666677776654
No 19
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.08 E-value=1.3e-05 Score=66.14 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=47.6
Q ss_pred ccccccCcceEEEEEeceEEEE-EEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEec
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFD-VRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFV 160 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fd-vrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~ 160 (255)
..+|.|..+|+.||++|++.+. +. +++. ..+++||.+.+|+|..|++... ..+..+-+++
T Consensus 48 ~~~h~h~~~E~~yVL~G~~~~~~i~--~g~~--~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v~t 108 (125)
T PRK13290 48 THLHYKNHLEAVYCIEGEGEVEDLA--TGEV--HPIRPGTMYALDKHDRHYLRAG--EDMRLVCVFN 108 (125)
T ss_pred ccceeCCCEEEEEEEeCEEEEEEcC--CCEE--EEeCCCeEEEECCCCcEEEEcC--CCEEEEEEEC
Confidence 3568887679999999999998 52 2443 6799999999999999999886 3455555565
No 20
>PRK11171 hypothetical protein; Provisional
Probab=98.01 E-value=3.1e-05 Score=70.64 Aligned_cols=58 Identities=22% Similarity=0.419 Sum_probs=47.8
Q ss_pred cccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecC
Q 025302 98 HLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (255)
Q Consensus 98 H~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~ 161 (255)
|.|..+|..||++|+|.+.+ +++| ..+++||.|.+|++..|+|....+...+.+ +||+
T Consensus 201 ~~~~~ee~i~Vl~G~~~~~~---~~~~--~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl-~~k~ 258 (266)
T PRK11171 201 ETHVMEHGLYVLEGKGVYRL---NNDW--VEVEAGDFIWMRAYCPQACYAGGPGPFRYL-LYKD 258 (266)
T ss_pred cCCCceEEEEEEeCEEEEEE---CCEE--EEeCCCCEEEECCCCCEEEECCCCCcEEEE-EEcc
Confidence 56889999999999999987 4666 569999999999999999987666556655 5554
No 21
>PLN00212 glutelin; Provisional
Probab=97.99 E-value=2.9e-05 Score=77.25 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=54.7
Q ss_pred ccccccccCcceEEEEEeceEEEEEEeCCC-------------------------cEEEEEEecCCEEEeCCCCccccee
Q 025302 93 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNE-------------------------KWIRIWVKKGGMIVLPAGCYHRFTL 147 (255)
Q Consensus 93 kF~~EH~H~ddEIryIleGsG~Fdvrd~dd-------------------------~wirI~ve~GDLIvVPAGt~HrFtl 147 (255)
.++-.|.|.-+++.||+.|+|++.+-..+- ..-.-.+++||+|.||||+.||...
T Consensus 91 gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN 170 (493)
T PLN00212 91 GLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYN 170 (493)
T ss_pred cccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECCCCeEEEEe
Confidence 368899998899999999999999864210 0001368899999999999999998
Q ss_pred CCCCcEEEEEEec
Q 025302 148 DTDNYIKAMRLFV 160 (255)
Q Consensus 148 ~~~~~vkAiRlF~ 160 (255)
+.+..+.++.++.
T Consensus 171 ~Gd~~~v~v~~~d 183 (493)
T PLN00212 171 DGDAPVVALYVYD 183 (493)
T ss_pred CCCCcEEEEEEEe
Confidence 8888888888774
No 22
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.95 E-value=1.8e-05 Score=72.51 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=52.2
Q ss_pred EEEECCCCCCChHHHhhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcE
Q 025302 76 FCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYI 153 (255)
Q Consensus 76 vVtlsp~~~Pn~e~k~~kF~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~v 153 (255)
.|.+.+.. |+. .+.+|.|+.-|+.||++|+|.+.+.+ + ...+++||+++||+|..|.|...++...
T Consensus 49 ~~~v~~~~-~~~------~~~~H~H~~~el~~v~~G~g~~~v~~---~--~~~l~~Gdl~~I~~~~~H~~~~~~~~~~ 114 (312)
T PRK13500 49 AVAVADRY-PQD------VFAEHTHDFCELVIVWRGNGLHVLND---R--PYRITRGDLFYIHADDKHSYASVNDLVL 114 (312)
T ss_pred CEEEecCC-CCC------CCCccccceEEEEEEEcCeEEEEECC---E--EEeecCCeEEEECCCCeecccccCCceE
Confidence 36666553 532 36899999999999999999999963 3 4679999999999999999986555433
No 23
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.86 E-value=3e-05 Score=69.59 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=44.4
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCC
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~ 150 (255)
..+|.|+.-|+.|+++|+|.+.+. ++ ...+++||+++||+|..|.+...++
T Consensus 31 ~~~H~H~~~ei~~i~~G~~~~~i~---~~--~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 31 FVEHTHQFCEIVIVWRGNGLHVLN---DH--PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CccccccceeEEEEecCceEEEEC---Ce--eeeecCCeEEEEcCCCcccccccCC
Confidence 568999999999999999999985 33 4679999999999999999876543
No 24
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.84 E-value=4.5e-05 Score=67.72 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=44.9
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCC
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~ 151 (255)
+.+|.|+.-|+.|+.+|+|.+.+. ++ ...+++||+++||+|..|.+...++.
T Consensus 31 ~~~H~h~~~~l~~v~~G~~~~~i~---~~--~~~l~~g~l~li~~~~~H~~~~~~~~ 82 (282)
T PRK13502 31 FAEHTHEFCELVMVWRGNGLHVLN---ER--PYRITRGDLFYIRAEDKHSYTSVNDL 82 (282)
T ss_pred CCccccceEEEEEEecCcEEEEEC---CE--EEeecCCcEEEECCCCcccccccCCc
Confidence 678999999999999999999985 33 36799999999999999999765543
No 25
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=97.84 E-value=6.2e-05 Score=65.24 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=48.2
Q ss_pred cccccCcceEEEEEeceEEEEEEeC----CCcEEEEEEecCCEEEeCCCCccc-ceeCCCCcEEEEEEecCCCCeeecC
Q 025302 96 EEHLHTDEEIRYCVAGSGYFDVRDR----NEKWIRIWVKKGGMIVLPAGCYHR-FTLDTDNYIKAMRLFVGDPVWTPFN 169 (255)
Q Consensus 96 ~EH~H~ddEIryIleGsG~Fdvrd~----dd~wirI~ve~GDLIvVPAGt~Hr-Ftl~~~~~vkAiRlF~~~~gWva~~ 169 (255)
.-|.|+-|||++|++|+|+-.+... .++--.+...+++.+.||.+..|. |..++...++++-+.+.+|.=+=++
T Consensus 58 PiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSrpPvkvf~y 136 (167)
T PF02041_consen 58 PIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIISRPPVKVFIY 136 (167)
T ss_dssp -EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEEESSS--EEEE
T ss_pred CCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEecCCCeEEEEe
Confidence 4899999999999999999999855 356668899999999999999997 5666678999999999888655443
No 26
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.81 E-value=5.7e-05 Score=67.08 Aligned_cols=49 Identities=22% Similarity=0.423 Sum_probs=42.6
Q ss_pred cccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCccccee
Q 025302 94 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTL 147 (255)
Q Consensus 94 F~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl 147 (255)
...+|.|+.-|+.||++|++.+.+. ++ .+.+++||+++||+|..|.+..
T Consensus 35 ~~~~H~H~~~ei~~v~~G~~~~~i~---~~--~~~l~~g~l~~i~p~~~H~~~~ 83 (278)
T PRK10296 35 VSGLHQHDYYEFTLVLTGRYYQEIN---GK--RVLLERGDFVFIPLGSHHQSFY 83 (278)
T ss_pred CCCCcccccEEEEEEEeceEEEEEC---CE--EEEECCCcEEEeCCCCccceee
Confidence 4579999999999999999999985 33 4689999999999999997643
No 27
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.78 E-value=3.3e-05 Score=67.99 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=44.9
Q ss_pred cccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCC
Q 025302 94 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 94 F~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~ 150 (255)
.+.+|.|+.-|+.||++|+|.+.+.+. ...+++||+++||+|..|.+...++
T Consensus 27 ~~~~H~H~~~ei~~v~~G~~~~~i~~~-----~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 27 AFPEHHHDFHEIVIVEHGTGIHVFNGQ-----PYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred cccccccCceeEEEEecCceeeEecCC-----cccccCCcEEEECCCccchhhhccC
Confidence 367999999999999999999999642 3679999999999999998876544
No 28
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=97.72 E-value=7.2e-05 Score=68.60 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=44.2
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCC
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~ 150 (255)
..+|.|++-|+.|+++|++.|.+. |+ .+.+.+||++++|+|+.|.+...++
T Consensus 39 ~~~HwH~e~Ei~yv~~G~~~~~i~---g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 39 PTSHWHGQVEVNVPFDGDVEYLIN---NE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred CCCCccccEEEEEecCCcEEEEEC---CE--EEEEcCCcEEEEecCCcccccccCC
Confidence 679999999999999999999885 33 4679999999999999998765444
No 29
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=97.69 E-value=0.00012 Score=71.72 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=49.6
Q ss_pred cccccC-cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecCC
Q 025302 96 EEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGD 162 (255)
Q Consensus 96 ~EH~H~-ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~ 162 (255)
..|.|. .+|.+||++|++.+.+. |+ ...+++||.+.+|+|+.|+|....+..++.+-++.++
T Consensus 390 ~~h~H~~~~E~~~Vl~G~~~v~~d---g~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~ 452 (468)
T TIGR01479 390 SLQMHHHRAEHWIVVSGTARVTIG---DE--TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGS 452 (468)
T ss_pred CccccCCCceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence 455554 36788999999999985 33 4689999999999999999998777778877776643
No 30
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.64 E-value=0.00013 Score=64.74 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=47.6
Q ss_pred ccccccC-cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEE
Q 025302 95 FEEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMR 157 (255)
Q Consensus 95 ~~EH~H~-ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiR 157 (255)
...|.|+ .-|+.|+++|++.+.+. ++ ...+++||++++|+|+.|.+...++....++.
T Consensus 36 ~~~H~H~~~~~l~~~~~G~~~~~~~---~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i~ 94 (287)
T TIGR02297 36 MPVHFHDRYYQLHYLTEGSIALQLD---EH--EYSEYAPCFFLTPPSVPHGFVTDLDADGHVLT 94 (287)
T ss_pred CCCcccccceeEEEEeeCceEEEEC---CE--EEEecCCeEEEeCCCCccccccCCCcceEEEE
Confidence 4689998 69999999999998885 33 46799999999999999998776655545554
No 31
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.63 E-value=0.00013 Score=66.68 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=43.1
Q ss_pred cccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecCCCCee
Q 025302 98 HLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWT 166 (255)
Q Consensus 98 H~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~~gWv 166 (255)
++++++|+.||++|+..|.+. ++ ...+++||.+++|+|..|.|.... +.+. ++..-+.+|.
T Consensus 171 wtl~~dEi~YVLEGe~~l~Id---G~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRf-lyV~~Pa~w~ 231 (233)
T PRK15457 171 WTLNYDEIDMVLEGELHVRHE---GE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRF-LYVAWPANWQ 231 (233)
T ss_pred eeccceEEEEEEEeEEEEEEC---CE--EEEeCCCcEEEECCCCeEEecCCC--CeeE-EEEEecCccc
Confidence 456779999999999999884 44 477999999999999995553322 3332 2223455574
No 32
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.54 E-value=0.00043 Score=59.52 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCCeeeEEEECCCCCCChHHHhhccccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEe
Q 025302 59 DEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVL 137 (255)
Q Consensus 59 ~~~ld~L~~erGY~~~DvVtlsp~~~Pn~e~k~~kF~~EH~H~d-dEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvV 137 (255)
..+++++.+++|+.. +++ +. -|---|.|.. -|+..+++|++...+.+.++. .+.+..||.|++
T Consensus 34 a~~~e~~~~~~gW~g----sW~-g~---------Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlli 97 (163)
T COG4297 34 AAQVEDHFKANGWFG----SWR-GG---------VFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLI 97 (163)
T ss_pred HHHHHHHHhhcCCcc----ccc-cc---------ccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEE
Confidence 467999999999963 111 11 2333577776 799999999999999987776 588999999999
Q ss_pred CCCCcccceeCCCCcEEEEEEecCCCCeeecCCCCCC--cHHHHHHHHHh
Q 025302 138 PAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDH--LPARDMFKISC 185 (255)
Q Consensus 138 PAGt~HrFtl~~~~~vkAiRlF~~~~gWva~~R~~D~--~~~R~~Yl~~~ 185 (255)
|||+-|+ .+.++..|+.+--|-....|. +.++++. -++|+ -++++
T Consensus 98 PAGvGH~-rl~sS~DF~VvGaYp~G~q~d-iqtg~~t~~aear~-~I~~v 144 (163)
T COG4297 98 PAGVGHC-RLHSSADFQVVGAYPPGQQAD-IQTGAPTDLAEARA-RIKSV 144 (163)
T ss_pred ecCcccc-cccCCCCeEEEcccCCccccc-ccCCCCccHHHHHH-HHHcC
Confidence 9999995 456677788887776655554 3555532 45554 34443
No 33
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=97.47 E-value=0.00054 Score=67.88 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=48.1
Q ss_pred cccccC-cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecC
Q 025302 96 EEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (255)
Q Consensus 96 ~EH~H~-ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~ 161 (255)
..|.|. .+|..||++|++.+.+. |+ ...+++||.+.+|+|+.|++....+..++.+-+..+
T Consensus 399 ~~~~H~~~~E~~~VlsG~~~v~id---g~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g 460 (478)
T PRK15460 399 SVQMHHHRAEHWVVVAGTAKVTID---GD--IKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSG 460 (478)
T ss_pred CcCCCCCCceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence 345553 36999999999999885 44 477999999999999999998877766776655544
No 34
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.00068 Score=57.19 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=55.1
Q ss_pred CeeeEEEECCCCCCChHHHhhccccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCC
Q 025302 72 SYMDFCEVCPEKLPNYEEKIKNFFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 72 ~~~DvVtlsp~~~Pn~e~k~~kF~~EH~H~d-dEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~ 150 (255)
-++.+|++.|+. . -.-|.|.+ |-+.|+++|+......+.= -..+.+.+||+|.||+|++|-...-++
T Consensus 46 i~~~~vTi~pgA----k------akaH~H~~hEtaIYvlsG~ah~w~G~rL--E~ha~~~pGDf~YiPpgVPHqp~N~S~ 113 (142)
T COG4101 46 ICMHLVTIPPGA----K------AKAHLHEEHETAIYVLSGEAHTWYGNRL--EEHAEVGPGDFFYIPPGVPHQPANLST 113 (142)
T ss_pred eeEEEEeeCCCc----c------ccccccccccEEEEEEeceeeeeeccce--eeeEEecCCCeEEcCCCCCCcccccCC
Confidence 367899999874 1 24799988 8899999999887775321 235789999999999999998755445
Q ss_pred CcEEEE
Q 025302 151 NYIKAM 156 (255)
Q Consensus 151 ~~vkAi 156 (255)
.-..++
T Consensus 114 ep~s~v 119 (142)
T COG4101 114 EPLSAV 119 (142)
T ss_pred CCeEEE
Confidence 445554
No 35
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=97.41 E-value=0.00078 Score=60.00 Aligned_cols=72 Identities=11% Similarity=0.121 Sum_probs=56.9
Q ss_pred CeeeEEEECCCCCCChHHHhhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCC
Q 025302 72 SYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (255)
Q Consensus 72 ~~~DvVtlsp~~~Pn~e~k~~kF~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~ 151 (255)
...-++.+.|+. -+.+|+|...|+.+||+|+ | .|.++ .+.+||+|.+|+|..|.++.+++.
T Consensus 127 ~~v~Ll~i~pG~----------~~p~H~H~G~E~tlVLeG~--f--~de~g-----~y~~Gd~i~~p~~~~H~p~a~~~~ 187 (215)
T TIGR02451 127 ARVRLLYIEAGQ----------SIPQHTHKGFELTLVLHGA--F--SDETG-----VYGVGDFEEADGSVQHQPRTVSGG 187 (215)
T ss_pred cEEEEEEECCCC----------ccCCCcCCCcEEEEEEEEE--E--EcCCC-----ccCCCeEEECCCCCCcCcccCCCC
Confidence 455677777764 2789999999999999999 3 34333 478999999999999999998887
Q ss_pred cEEEEEEecCC
Q 025302 152 YIKAMRLFVGD 162 (255)
Q Consensus 152 ~vkAiRlF~~~ 162 (255)
...++-+..++
T Consensus 188 ~Cicl~v~dap 198 (215)
T TIGR02451 188 DCLCLAVLDAP 198 (215)
T ss_pred CeEEEEEecCC
Confidence 77777666554
No 36
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=97.30 E-value=0.0013 Score=56.03 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=56.7
Q ss_pred hcCCCeeeEEEECCCCCCChHHHhhccccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccce
Q 025302 68 DRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (255)
Q Consensus 68 erGY~~~DvVtlsp~~~Pn~e~k~~kF~~EH~H~d-dEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFt 146 (255)
..+|+. -.+++.|+. -+..|.|.. +|.++|++|+|.+.+. |+. ..+.+||.+.||+|..|+..
T Consensus 60 ~~~~~v-kri~V~pG~----------~lSlq~H~~R~E~W~Vv~G~a~v~~~---~~~--~~~~~g~sv~Ip~g~~H~i~ 123 (151)
T PF01050_consen 60 GEGYKV-KRITVNPGK----------RLSLQYHHHRSEHWTVVSGTAEVTLD---DEE--FTLKEGDSVYIPRGAKHRIE 123 (151)
T ss_pred cCCEEE-EEEEEcCCC----------ccceeeecccccEEEEEeCeEEEEEC---CEE--EEEcCCCEEEECCCCEEEEE
Confidence 445654 566667664 366777876 9999999999999984 443 56999999999999999997
Q ss_pred eCCCCcEEEEEEec
Q 025302 147 LDTDNYIKAMRLFV 160 (255)
Q Consensus 147 l~~~~~vkAiRlF~ 160 (255)
...+..+..+-+=.
T Consensus 124 n~g~~~L~~IEVq~ 137 (151)
T PF01050_consen 124 NPGKTPLEIIEVQT 137 (151)
T ss_pred CCCCcCcEEEEEec
Confidence 75554455554433
No 37
>PRK11171 hypothetical protein; Provisional
Probab=97.26 E-value=0.00098 Score=60.91 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=40.7
Q ss_pred CcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEE
Q 025302 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAM 156 (255)
Q Consensus 101 ~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAi 156 (255)
..+|..||++|++.+.+. ++ ...+++||.+.+|+|..|+|....+...+.+
T Consensus 82 ~~eE~~~VlsG~l~v~~~---g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l 132 (266)
T PRK11171 82 GAETFLFVVEGEITLTLE---GK--THALSEGGYAYLPPGSDWTLRNAGAEDARFH 132 (266)
T ss_pred CceEEEEEEeCEEEEEEC---CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 458999999999999884 44 4679999999999999999976544444444
No 38
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=97.22 E-value=0.0012 Score=60.35 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=42.5
Q ss_pred ccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEE
Q 025302 97 EHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKA 155 (255)
Q Consensus 97 EH~H~d-dEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkA 155 (255)
.|.|.. +|..||++|++...+. +++ ..+++||.+.+|+|..|+|....+...+.
T Consensus 74 ~~~~~g~ee~iyVl~G~l~v~~~---g~~--~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~ 128 (260)
T TIGR03214 74 GFGGEGIETFLFVISGEVNVTAE---GET--HELREGGYAYLPPGSKWTLANAQAEDARF 128 (260)
T ss_pred CCCCCceEEEEEEEeCEEEEEEC---CEE--EEECCCCEEEECCCCCEEEEECCCCCEEE
Confidence 455666 8999999999988764 443 57999999999999999997655544443
No 39
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.21 E-value=0.0006 Score=52.22 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=43.0
Q ss_pred eeeEEEECCCCCCChHHHhhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCC
Q 025302 73 YMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 73 ~~DvVtlsp~~~Pn~e~k~~kF~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~ 150 (255)
..-++.+.|+. -+..|.|...|-.|||+|+... .++ ...+||++..|+|+.|.+..++.
T Consensus 25 ~~~L~r~~pG~----------~~p~H~H~g~ee~~VLeG~~~d----~~~-----~~~~G~~~~~p~g~~h~~~s~~g 83 (91)
T PF12973_consen 25 RVSLLRLEPGA----------SLPRHRHPGGEEILVLEGELSD----GDG-----RYGAGDWLRLPPGSSHTPRSDEG 83 (91)
T ss_dssp EEEEEEE-TTE----------EEEEEEESS-EEEEEEECEEEE----TTC-----EEETTEEEEE-TTEEEEEEESSC
T ss_pred EEEEEEECCCC----------CcCccCCCCcEEEEEEEEEEEE----CCc-----cCCCCeEEEeCCCCccccCcCCC
Confidence 45666777664 4789999998888999999663 333 25899999999999999986433
No 40
>PLN00212 glutelin; Provisional
Probab=97.19 E-value=0.0028 Score=63.44 Aligned_cols=68 Identities=9% Similarity=0.196 Sum_probs=56.2
Q ss_pred cccccccCc-ceEEEEEeceEEEEEEeCC-CcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecCC
Q 025302 94 FFEEHLHTD-EEIRYCVAGSGYFDVRDRN-EKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGD 162 (255)
Q Consensus 94 F~~EH~H~d-dEIryIleGsG~Fdvrd~d-d~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~ 162 (255)
.+..|.|.. -||.||++|+|.+.+-+.+ .+++.=.+.+||+++||+|-.|--.++.+. +..+-+.+..
T Consensus 360 m~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~eg-fe~v~F~tna 429 (493)
T PLN00212 360 LLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREG-CQYIAFKTNA 429 (493)
T ss_pred ccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCc-eEEEEeecCC
Confidence 488999987 8999999999999998755 568888999999999999999976666444 7766666554
No 41
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.14 E-value=0.0012 Score=57.41 Aligned_cols=62 Identities=21% Similarity=0.416 Sum_probs=48.4
Q ss_pred ccccC-cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCC--CcccceeCCCCcEEEEEEecCCC
Q 025302 97 EHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAG--CYHRFTLDTDNYIKAMRLFVGDP 163 (255)
Q Consensus 97 EH~H~-ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAG--t~HrFtl~~~~~vkAiRlF~~~~ 163 (255)
.|.|. +||.+|||+|++.+.+. +. +..+++||.+--||| +-|-|...+..-++.+-+-..++
T Consensus 58 ~H~Hs~edEfv~ILeGE~~l~~d---~~--e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~r~~ 122 (161)
T COG3837 58 RHWHSAEDEFVYILEGEGTLRED---GG--ETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVGTREP 122 (161)
T ss_pred ccccccCceEEEEEcCceEEEEC---Ce--eEEecCCceeeccCCCcceeEEeecCCceEEEEEeccccc
Confidence 45554 58999999999998774 32 456999999999999 99999887777777766655544
No 42
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.14 E-value=0.00048 Score=65.55 Aligned_cols=80 Identities=28% Similarity=0.436 Sum_probs=58.4
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeC-CCCcE------------EEEEEecC
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLD-TDNYI------------KAMRLFVG 161 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~-~~~~v------------kAiRlF~~ 161 (255)
-..|.|..--+|||++|.|-|.+-|. + ++.+++||+|+.|+++.|-.... .++-+ ...-||..
T Consensus 105 ApsHrHsqsAlRFvveG~Ga~T~VdG--e--r~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDiplv~~l~~gFfe~ 180 (351)
T COG3435 105 APSHRHNQSALRFVVEGKGAYTVVDG--E--RTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDIPLVNSLGAGFFEE 180 (351)
T ss_pred CCcccccccceEEEEeccceeEeecC--c--eeeccCCCEEEccCceeccCCCCCCCceEEEcccchHHHHhhccccccc
Confidence 67899999999999999999999753 2 58899999999999999976443 33321 11224433
Q ss_pred -CCCeeecCCCCCCcHHH
Q 025302 162 -DPVWTPFNRPHDHLPAR 178 (255)
Q Consensus 162 -~~gWva~~R~~D~~~~R 178 (255)
++.=.|..|+.++.-+|
T Consensus 181 ~~e~~q~v~~~~~d~~ar 198 (351)
T COG3435 181 HPEEQQPVTRPEGDSLAR 198 (351)
T ss_pred CchhcCcccCCCCCchhh
Confidence 34446777777766666
No 43
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=96.96 E-value=0.0011 Score=49.56 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=35.8
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCccccee
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTL 147 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl 147 (255)
+.++... +|..|||+|++.+... ++. ++.+++||.+++|+|..-.++.
T Consensus 19 ~~~~~~~-~E~~~vleG~v~it~~--~G~--~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 19 FPWPYPE-DEFFYVLEGEVTITDE--DGE--TVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp EEEEESS-EEEEEEEEEEEEEEET--TTE--EEEEETTEEEEE-TTEEEEEEE
T ss_pred eEeeCCC-CEEEEEEEeEEEEEEC--CCC--EEEEcCCcEEEECCCCEEEEEE
Confidence 3344433 9999999999887653 554 4789999999999998766654
No 44
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=96.90 E-value=0.0025 Score=60.89 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=45.4
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCc
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNY 152 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~ 152 (255)
-..|.|...-++||++|+|.|.+- +++ ++..++||+|++|.+..|.+..+++..
T Consensus 94 ~~~HRht~sAl~~vveG~G~~t~V--~g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~ 147 (335)
T TIGR02272 94 APSHRHTQSALRFIVEGKGAFTAV--DGE--RTTMHPGDFIITPSWTWHDHGNPGDEP 147 (335)
T ss_pred CCccccccceEEEEEEcCceEEEE--CCE--EEeeeCCCEEEeCCCeeEecccCCCCc
Confidence 568999999999999999987774 454 688999999999999999987665543
No 45
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=96.73 E-value=0.011 Score=56.56 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=59.1
Q ss_pred HHHHHHHHH---hcCCCeeeEEEECCCCCCCh----HHHhhcc-----ccccccCcceEEEEEeceEEEEEEeCCCcEEE
Q 025302 59 DEELKKIRE---DRGYSYMDFCEVCPEKLPNY----EEKIKNF-----FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIR 126 (255)
Q Consensus 59 ~~~ld~L~~---erGY~~~DvVtlsp~~~Pn~----e~k~~kF-----~~EH~H~ddEIryIleGsG~Fdvrd~dd~wir 126 (255)
.+.|+++.+ ..+|...-+--++|.+-+.. ...+.+. -..|.|+...|++|++|+|+-.+. |+ +
T Consensus 215 ~~aL~~~~~~~~~~~~~g~~l~y~NP~TG~~~~pti~~~~q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~ig---~~--~ 289 (335)
T TIGR02272 215 REALDDLTRTGEWDPWHGLKLRYVNPATGGYPMPTIGAFIQLLPKGFRTATYRSTDATVFCVVEGRGQVRIG---DA--V 289 (335)
T ss_pred HHHHHHHHhccCCCCCceEEEEEeCCCCCCCcchhHHHHHhccCCCCCCCCccccccEEEEEEeCeEEEEEC---CE--E
Confidence 455666543 23554444456677643332 2222211 457889999999999999999885 33 5
Q ss_pred EEEecCCEEEeCCCCcccceeCCC
Q 025302 127 IWVKKGGMIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 127 I~ve~GDLIvVPAGt~HrFtl~~~ 150 (255)
+..++||+++||+...|.+..+++
T Consensus 290 ~~W~~gD~f~vPsW~~~~h~a~~d 313 (335)
T TIGR02272 290 FRFSPKDVFVVPSWHPVRFEASDD 313 (335)
T ss_pred EEecCCCEEEECCCCcEecccCCC
Confidence 789999999999998888877643
No 46
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.54 E-value=0.0095 Score=51.47 Aligned_cols=53 Identities=26% Similarity=0.423 Sum_probs=39.4
Q ss_pred cccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCC
Q 025302 96 EEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (255)
Q Consensus 96 ~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~ 149 (255)
+.|.-+.+|.+|-++|.....+.+ +++.-.|.++.||++.+|++++|...-.+
T Consensus 47 DyHine~eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~ 99 (151)
T PF06052_consen 47 DYHINETEEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPA 99 (151)
T ss_dssp SEEE-SS-EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-T
T ss_pred ccccCCcceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCC
Confidence 678888999999999999999986 56667899999999999999999876543
No 47
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=96.38 E-value=0.019 Score=47.56 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=36.6
Q ss_pred ccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCC-EEEeCCCCcccceeCCCC
Q 025302 95 FEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGG-MIVLPAGCYHRFTLDTDN 151 (255)
Q Consensus 95 ~~EH~H~d-dEIryIleGsG~Fdvrd~dd~wirI~ve~GD-LIvVPAGt~HrFtl~~~~ 151 (255)
-.+|.|.. .|.+++++|+..+.+.|...+ -.+.+...+ .+.||+|+.|.+..-+.+
T Consensus 46 RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ippg~w~~~~~~s~~ 103 (131)
T PF05523_consen 46 RGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIPPGVWHGIKNFSED 103 (131)
T ss_dssp EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-TT-EEEEE---TT
T ss_pred ccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEECCchhhHhhccCCC
Confidence 35999976 899999999999999875443 456666665 799999999999765555
No 48
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.25 E-value=0.013 Score=51.27 Aligned_cols=85 Identities=19% Similarity=0.286 Sum_probs=58.0
Q ss_pred eeeEEEECCCC-C-CChHHHhhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCC
Q 025302 73 YMDFCEVCPEK-L-PNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 73 ~~DvVtlsp~~-~-Pn~e~k~~kF~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~ 150 (255)
.-|+|+....+ + ..+-+.-..+|.|.+ ..||+-||++|+...... |+ .+..+|||+|.+|.|-.=-|+.+..
T Consensus 88 ~tdLvt~~~g~~l~aG~m~~~~~tf~wtl-~yDe~d~VlEGrL~V~~~---g~--tv~a~aGDvifiPKgssIefst~ge 161 (176)
T COG4766 88 TTDLVTEQEGSRLGAGLMEMKNTTFPWTL-NYDEIDYVLEGRLHVRID---GR--TVIAGAGDVIFIPKGSSIEFSTTGE 161 (176)
T ss_pred eeceeecccCCccccceeeeccccCccee-cccceeEEEeeeEEEEEc---CC--eEecCCCcEEEecCCCeEEEeccce
Confidence 44777766443 0 135555557788754 579999999998765543 33 4779999999999999988877655
Q ss_pred CcEEEEEEecCCCCee
Q 025302 151 NYIKAMRLFVGDPVWT 166 (255)
Q Consensus 151 ~~vkAiRlF~~~~gWv 166 (255)
.+.+ +++=+..|.
T Consensus 162 --a~fl-yvtyPanWq 174 (176)
T COG4766 162 --AKFL-YVTYPANWQ 174 (176)
T ss_pred --EEEE-EEEcccccc
Confidence 3333 445555575
No 49
>PF12852 Cupin_6: Cupin
Probab=96.23 E-value=0.0097 Score=50.37 Aligned_cols=43 Identities=23% Similarity=0.465 Sum_probs=34.1
Q ss_pred eEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCC
Q 025302 104 EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (255)
Q Consensus 104 EIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~ 149 (255)
-..+|++|++++.+.+. +. .+.+++||++++|.|..|++.-++
T Consensus 37 ~fh~V~~G~~~l~~~~~-~~--~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 37 SFHVVLRGSCWLRVPGG-GE--PIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred EEEEEECCeEEEEEcCC-CC--eEEecCCCEEEEcCCCCeEeCCCC
Confidence 35678999999988632 22 478999999999999999995433
No 50
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=95.92 E-value=0.011 Score=50.98 Aligned_cols=43 Identities=26% Similarity=0.522 Sum_probs=31.9
Q ss_pred CcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeC
Q 025302 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLD 148 (255)
Q Consensus 101 ~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~ 148 (255)
+.||+-||++|+ +.+.+ +++. +..++||+|.+|+|..=.|...
T Consensus 94 ~YDEi~~VlEG~--L~i~~-~G~~--~~A~~GDvi~iPkGs~I~fst~ 136 (152)
T PF06249_consen 94 TYDEIKYVLEGT--LEISI-DGQT--VTAKPGDVIFIPKGSTITFSTP 136 (152)
T ss_dssp SSEEEEEEEEEE--EEEEE-TTEE--EEEETT-EEEE-TT-EEEEEEE
T ss_pred ecceEEEEEEeE--EEEEE-CCEE--EEEcCCcEEEECCCCEEEEecC
Confidence 569999999887 55653 4654 6799999999999999988653
No 51
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.90 E-value=0.019 Score=51.32 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=41.2
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCC
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~ 150 (255)
...|-+..-++-++++|+|.+.+. ++ +..+++||+|++|+|+.|.+...++
T Consensus 42 ~r~~~~~~~~i~~~~~G~~~~~~~---~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 42 DRPLGMKGYILNLTIRGQGVIFNG---GR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred ecCCCccceEEEEEEeccEEEecC---Ce--eEecCCCCEEEECCCCceeeccCCC
Confidence 456666778899999999998764 33 4789999999999999998865443
No 52
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=95.70 E-value=0.016 Score=48.06 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=42.0
Q ss_pred CCCeeeEEEECCCCCCChHHHhhccccccccC-cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCccc
Q 025302 70 GYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHR 144 (255)
Q Consensus 70 GY~~~DvVtlsp~~~Pn~e~k~~kF~~EH~H~-ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~Hr 144 (255)
|=...-+-.-+|+. +|.+- ++|..+||+|.+.+.-+ +++ .+++++||.+++|+|..=-
T Consensus 43 g~~~~GiWe~TpG~-------------~r~~y~~~E~chil~G~v~~T~d--~Ge--~v~~~aGD~~~~~~G~~g~ 101 (116)
T COG3450 43 GQVETGIWECTPGK-------------FRVTYDEDEFCHILEGRVEVTPD--GGE--PVEVRAGDSFVFPAGFKGT 101 (116)
T ss_pred CCeeEeEEEecCcc-------------ceEEcccceEEEEEeeEEEEECC--CCe--EEEEcCCCEEEECCCCeEE
Confidence 33444566666654 45553 48999999999998664 354 4779999999999997653
No 53
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=95.14 E-value=0.037 Score=54.65 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=39.2
Q ss_pred ccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEe
Q 025302 93 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLF 159 (255)
Q Consensus 93 kF~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF 159 (255)
++|. -.+.||+.|+-+|++.+.-+ =| .+.+++||+++||.||.+|..+....+.-.+-.|
T Consensus 139 ~~f~--NaDGD~Li~~q~G~l~l~Te--~G---~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E~~ 198 (424)
T PF04209_consen 139 RAFR--NADGDELIFPQQGSLRLETE--FG---RLDVRPGDYVVIPRGTRFRVELPGPARGYIIENF 198 (424)
T ss_dssp EEEE--ESSEEEEEEEEES-EEEEET--TE---EEEE-TTEEEEE-TT--EEEE-SSSEEEEEEEEE
T ss_pred cceE--cCCCCEEEEEEECCEEEEec--Ce---eEEEcCCeEEEECCeeEEEEEeCCCceEEEEEcC
Confidence 4444 34559999999999987664 23 4789999999999999999998855444444444
No 54
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.43 E-value=0.12 Score=51.19 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=43.6
Q ss_pred cCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEec
Q 025302 100 HTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFV 160 (255)
Q Consensus 100 H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~ 160 (255)
.+.|++.++-+|++.+.-+ - + ++.+++||+++||.||.+|.++....+.-.+-.|.
T Consensus 146 aDGD~Livpq~G~l~i~TE-f-G---~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 146 ADGDFLIVPQQGALLITTE-F-G---RLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred cCCCEEEEEEeCcEEEEEe-c-c---ceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 4569999999999998776 3 3 48999999999999999999986544444444444
No 55
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=94.05 E-value=0.09 Score=40.36 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=17.7
Q ss_pred CCcEEEEEEecCCEEEeCCCCcccce
Q 025302 121 NEKWIRIWVKKGGMIVLPAGCYHRFT 146 (255)
Q Consensus 121 dd~wirI~ve~GDLIvVPAGt~HrFt 146 (255)
+-+.+++..++||+|++|+|.+|+--
T Consensus 77 gi~~~~~~Q~~Ge~V~i~pg~~H~v~ 102 (114)
T PF02373_consen 77 GIPVYRFVQKPGEFVFIPPGAYHQVF 102 (114)
T ss_dssp TS--EEEEEETT-EEEE-TT-EEEEE
T ss_pred CcccccceECCCCEEEECCCceEEEE
Confidence 34566788999999999999999853
No 56
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=94.00 E-value=0.11 Score=51.69 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=38.5
Q ss_pred cCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCC
Q 025302 100 HTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (255)
Q Consensus 100 H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~ 149 (255)
.+.||+.++-+|++.+.-+ - + ++.+++||+++||.||.++..+.+
T Consensus 152 aDGD~Livpq~G~l~i~TE-f-G---~L~v~pgei~VIPRG~~frv~l~~ 196 (438)
T PRK05341 152 ADGELLIVPQQGRLRLATE-L-G---VLDVEPGEIAVIPRGVKFRVELPD 196 (438)
T ss_pred CCCCEEEEEEeCCEEEEEe-c-c---ceEecCCCEEEEcCccEEEEecCC
Confidence 3559999999999998776 2 3 488999999999999999999744
No 57
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=93.37 E-value=0.2 Score=46.29 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=45.4
Q ss_pred ccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecC
Q 025302 99 LHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (255)
Q Consensus 99 ~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~ 161 (255)
+|--|--.|||+|+|.|.+. ..| +.+++||+|-+-|--..+...+....++-+ |+++
T Consensus 200 tHvmEHGlyvLeGk~vYrLn---~dw--v~V~aGD~mwm~A~cpQacyagG~g~frYL-lyKD 256 (264)
T COG3257 200 THVMEHGLYVLEGKGVYRLN---NNW--VPVEAGDYIWMGAYCPQACYAGGRGAFRYL-LYKD 256 (264)
T ss_pred hhhhhcceEEEecceEEeec---Cce--EEeecccEEEeeccChhhhccCCCCceEEE-EEec
Confidence 45566779999999999885 456 679999999999988888877666677766 5665
No 58
>PLN02658 homogentisate 1,2-dioxygenase
Probab=93.09 E-value=0.29 Score=48.68 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=42.3
Q ss_pred cCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCC-CCcEEEEEEe
Q 025302 100 HTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT-DNYIKAMRLF 159 (255)
Q Consensus 100 H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~-~~~vkAiRlF 159 (255)
++.|++.++-+|++.+.-+ - + ++.+++||+++||.||.++..+.+ ..+.-.+-.|
T Consensus 145 aDGD~Livpq~G~l~i~TE-f-G---~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~ 200 (435)
T PLN02658 145 ADGDFLIVPQQGRLWIKTE-L-G---KLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIF 200 (435)
T ss_pred CCCCEEEEEEeCCEEEEEe-c-c---ceEecCCCEEEecCccEEEEecCCCCeeEEEEeec
Confidence 3559999999999998776 2 3 488999999999999999999744 3334344444
No 59
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=92.05 E-value=0.45 Score=42.62 Aligned_cols=43 Identities=7% Similarity=0.138 Sum_probs=33.8
Q ss_pred eEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCC
Q 025302 104 EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (255)
Q Consensus 104 EIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~ 151 (255)
-+.++++|++.+... ++ .+.+++||++++|++..|.+......
T Consensus 73 ~l~~~~~G~~~~~~~---g~--~~~l~~G~~~l~~~~~p~~~~~~~~~ 115 (302)
T PRK09685 73 FTVFQLSGHAIIEQD---DR--QVQLAAGDITLIDASRPCSIYPQGLS 115 (302)
T ss_pred EEEEEecceEEEEEC---Ce--EEEEcCCCEEEEECCCCcEeecCCCc
Confidence 466778999998775 33 36799999999999999988765443
No 60
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=92.02 E-value=0.19 Score=46.59 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=30.2
Q ss_pred cccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCC
Q 025302 96 EEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 96 ~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~ 150 (255)
..|+|.-++-.+|++|....+=.+.. ...+.+|.+...|||..| ++....
T Consensus 50 pph~H~~~~~~~Vi~G~~~~~~~~a~----~~~l~~Gsy~~~PaG~~h-~~~~~~ 99 (251)
T PF14499_consen 50 PPHIHNADYRGTVISGELHNGDPKAA----AMWLPAGSYWFQPAGEPH-ITAAEG 99 (251)
T ss_dssp --BEESS-EEEEEEESEEEETTEE---------E-TTEEEEE-TT-EE-EETTS-
T ss_pred CCcceeeeEEEEEEEeEEEcCCCccc----ceecCCCceEeccCCCce-eeeccC
Confidence 58999999999999998665422111 245899999999999777 444443
No 61
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=91.29 E-value=0.3 Score=45.05 Aligned_cols=49 Identities=24% Similarity=0.431 Sum_probs=42.2
Q ss_pred cccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccc
Q 025302 96 EEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRF 145 (255)
Q Consensus 96 ~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrF 145 (255)
..|+.+.+|.||-.+|+....|-++ ++.-.|.++.||++.+||.++|..
T Consensus 47 dyHieegeE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSP 95 (279)
T KOG3995|consen 47 DYHIEEGEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSP 95 (279)
T ss_pred ccccCCcchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCCh
Confidence 5688888999999999999999854 444478999999999999999953
No 62
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=90.47 E-value=0.64 Score=39.81 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=25.7
Q ss_pred cEEEEEEecCCEEEeCCCCcccceeC-CCC-cEEEEEEecC
Q 025302 123 KWIRIWVKKGGMIVLPAGCYHRFTLD-TDN-YIKAMRLFVG 161 (255)
Q Consensus 123 ~wirI~ve~GDLIvVPAGt~HrFtl~-~~~-~vkAiRlF~~ 161 (255)
..+.+.+++||+|.||+|-.|..... +++ .+..=..|..
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~ 247 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRT 247 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEES
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecc
Confidence 46899999999999999999998766 344 4444444443
No 63
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=90.12 E-value=1 Score=35.28 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=44.4
Q ss_pred CCeeeEEEECCCCCCChHHHhhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCC
Q 025302 71 YSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 71 Y~~~DvVtlsp~~~Pn~e~k~~kF~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~ 150 (255)
+-..-.+.|.|+.. | -..+++.+--++||++|.....+++ . ...+.+||.+.||+|-+--+....+
T Consensus 11 ~fa~G~l~Lpp~~~-----K----~~k~s~~~~~vF~V~~G~v~Vti~~---~--~f~v~~G~~F~VP~gN~Y~i~N~~~ 76 (85)
T PF11699_consen 11 FFASGMLELPPGGE-----K----PPKNSRDNTMVFYVIKGKVEVTIHE---T--SFVVTKGGSFQVPRGNYYSIKNIGN 76 (85)
T ss_dssp S-EEEEEEE-TCCC-----E----EEEE--SEEEEEEEEESEEEEEETT---E--EEEEETT-EEEE-TT-EEEEEE-SS
T ss_pred CceeEEEEeCCCCc-----c----CCcccCCcEEEEEEEeCEEEEEEcC---c--EEEEeCCCEEEECCCCEEEEEECCC
Confidence 45567788877641 1 1356667789999999999999973 2 4669999999999998888876544
Q ss_pred C
Q 025302 151 N 151 (255)
Q Consensus 151 ~ 151 (255)
.
T Consensus 77 ~ 77 (85)
T PF11699_consen 77 E 77 (85)
T ss_dssp S
T ss_pred C
Confidence 4
No 64
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=90.04 E-value=1.4 Score=37.34 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=46.2
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecCC
Q 025302 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGD 162 (255)
Q Consensus 103 dEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~ 162 (255)
-|..|+++|+|.....+ +++++ .++||.+..+-+.-.|...+.+ .++++=.|..+
T Consensus 56 lEAvyci~G~Gev~~~~-~G~~~--~i~pGt~YaLd~hD~H~lra~~--dm~~vCVFnPp 110 (126)
T PF06339_consen 56 LEAVYCIEGEGEVEDLD-TGEVH--PIKPGTMYALDKHDRHYLRAKT--DMRLVCVFNPP 110 (126)
T ss_pred eEEEEEEeceEEEEEcc-CCcEE--EcCCCeEEecCCCccEEEEecC--CEEEEEEcCCC
Confidence 69999999999976652 56664 5899999999999999999877 68888888765
No 65
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=89.84 E-value=1.1 Score=35.87 Aligned_cols=49 Identities=14% Similarity=0.277 Sum_probs=36.9
Q ss_pred EEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEE
Q 025302 105 IRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRL 158 (255)
Q Consensus 105 IryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRl 158 (255)
+.+.++|++.+... ++ ++.+.+||+++++++-.+++...+......+++
T Consensus 58 l~~~~~G~~~~~~~---g~--~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~i 106 (172)
T PF14525_consen 58 LVLPLSGSARIEQG---GR--EVELAPGDVVLLDPGQPYRLEFSAGCRQLSLRI 106 (172)
T ss_pred EEEEccCCEEEEEC---CE--EEEEcCCeEEEEcCCCCEEEEECCCccEEEEEE
Confidence 44556666665553 33 578999999999999999999887766666665
No 66
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.57 E-value=0.95 Score=43.66 Aligned_cols=100 Identities=27% Similarity=0.404 Sum_probs=67.8
Q ss_pred CHHHHHHHHHhc------CCCeeeEEEECCCC----CCCh----HHHhhcc-ccccccCcceEEEEEeceEEEEEEeCCC
Q 025302 58 TDEELKKIREDR------GYSYMDFCEVCPEK----LPNY----EEKIKNF-FEEHLHTDEEIRYCVAGSGYFDVRDRNE 122 (255)
Q Consensus 58 ~~~~ld~L~~er------GY~~~DvVtlsp~~----~Pn~----e~k~~kF-~~EH~H~ddEIryIleGsG~Fdvrd~dd 122 (255)
+++.|++|.... ||+-+ -++|-+ +|.. +-+...| -+-|.|.+--|+-|++|+||-.+. +
T Consensus 225 t~eAL~~la~~e~~dp~dG~~~r---yvNP~TGg~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~Ig---~ 298 (351)
T COG3435 225 TREALERLARLEEPDPFDGYKMR---YVNPVTGGYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTIIG---G 298 (351)
T ss_pred HHHHHHHHHhccCCCCCCcceEE---EecCCCCCCcCchHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEEC---C
Confidence 567788888776 65432 223332 2322 2222344 458999999999999999998885 3
Q ss_pred cEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecCCCCeee
Q 025302 123 KWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 167 (255)
Q Consensus 123 ~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~~gWva 167 (255)
+ +....+||+++||.=-.|.+..++++. .+-=|++.|.-.+
T Consensus 299 ~--rf~~~~~D~fvVPsW~~~~~~~gs~da--~LFsfsD~PV~ea 339 (351)
T COG3435 299 E--RFDWSAGDIFVVPSWAWHEHVNGSEDA--VLFSFSDRPVMEA 339 (351)
T ss_pred E--EeeccCCCEEEccCcceeecccCCcce--EEEecCCcHHHHH
Confidence 3 577899999999999999998875442 2334566665444
No 67
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=87.00 E-value=3.1 Score=37.90 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=55.1
Q ss_pred hHHHhhccccccccCc--ceEEEEEeceEEEEEEeCCCcEE-EEEEec-CCEEEeCCCCcccceeCCCCcEEEEEEecCC
Q 025302 87 YEEKIKNFFEEHLHTD--EEIRYCVAGSGYFDVRDRNEKWI-RIWVKK-GGMIVLPAGCYHRFTLDTDNYIKAMRLFVGD 162 (255)
Q Consensus 87 ~e~k~~kF~~EH~H~d--dEIryIleGsG~Fdvrd~dd~wi-rI~ve~-GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~ 162 (255)
.+..-+.|.+.|-|.. .|..-|++|+..|.+-|.++..+ +..+.+ ++--++|++..|+....+++--.-+.||..+
T Consensus 16 ~~~~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~fy~~~ 95 (287)
T PRK12335 16 KDTLPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSFYCKP 95 (287)
T ss_pred hhhchHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEEEEcc
Confidence 4555588999999964 79999999999888876655422 233444 4455699999999988766655556677665
Q ss_pred C
Q 025302 163 P 163 (255)
Q Consensus 163 ~ 163 (255)
.
T Consensus 96 ~ 96 (287)
T PRK12335 96 E 96 (287)
T ss_pred h
Confidence 3
No 68
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=86.62 E-value=2.2 Score=34.55 Aligned_cols=62 Identities=24% Similarity=0.334 Sum_probs=41.6
Q ss_pred cccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCC--CCcccceeCCC-CcEEEEEEe
Q 025302 94 FFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPA--GCYHRFTLDTD-NYIKAMRLF 159 (255)
Q Consensus 94 F~~EH~H~d-dEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPA--Gt~HrFtl~~~-~~vkAiRlF 159 (255)
=|..|.|.+ |-+-|+++|+... +|..+. +-.+++||+=..=| |+.|-=...++ ..+..++++
T Consensus 41 gf~~HPH~g~eivTyv~~G~~~H--~Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQlW 106 (107)
T PF02678_consen 41 GFPMHPHRGFEIVTYVLEGELRH--RDSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQLW 106 (107)
T ss_dssp EEEEEEECSEEEEEEEEESEEEE--EETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEEE
T ss_pred CCCCcCCCCceEEEEEecCEEEE--ECCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEEc
Confidence 379999998 7788999998765 344443 35699999965555 57786444444 567766664
No 69
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=85.48 E-value=3 Score=39.07 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=35.9
Q ss_pred ccccccCcceEEEEEeceEEEEEEeC------------------CCcEEEEEEecCCEEEeCCCCcccceeCC
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFDVRDR------------------NEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fdvrd~------------------dd~wirI~ve~GDLIvVPAGt~HrFtl~~ 149 (255)
|..|.=+.|=+.+-++|+=...+... ......+.++|||++.||+|+.|.-++.+
T Consensus 128 ~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~ 200 (319)
T PF08007_consen 128 FGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTD 200 (319)
T ss_dssp SECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS
T ss_pred ccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCCC
Confidence 66676666666667888888877741 02355789999999999999999988766
No 70
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=84.21 E-value=6.8 Score=34.25 Aligned_cols=61 Identities=16% Similarity=0.350 Sum_probs=41.8
Q ss_pred hhccccccccCcceEEEEEeceEEEEEEe--CC----CcEEEEEEecCC--EEEeCCCCcccceeCCCC
Q 025302 91 IKNFFEEHLHTDEEIRYCVAGSGYFDVRD--RN----EKWIRIWVKKGG--MIVLPAGCYHRFTLDTDN 151 (255)
Q Consensus 91 ~~kF~~EH~H~ddEIryIleGsG~Fdvrd--~d----d~wirI~ve~GD--LIvVPAGt~HrFtl~~~~ 151 (255)
+.-.|+...|....+..++.|+.+--+-| ++ ++|..+.+.+++ .|.||+|..|-|-.-+++
T Consensus 56 RGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~ 124 (176)
T PF00908_consen 56 RGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD 124 (176)
T ss_dssp EEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE
T ss_pred EEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc
Confidence 33334444445568889999988655544 32 789999998887 699999999999755544
No 71
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=84.05 E-value=3.2 Score=38.59 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=34.8
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCC
Q 025302 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 103 dEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~ 150 (255)
|-+.||++|+....+. ++. ..+.+|++..+|+|..|.++....
T Consensus 84 e~~lfVv~Ge~tv~~~---G~t--h~l~eggyaylPpgs~~~~~N~~~ 126 (264)
T COG3257 84 ETFLFVVSGEITVKAE---GKT--HALREGGYAYLPPGSGWTLRNAQK 126 (264)
T ss_pred eEEEEEEeeeEEEEEc---CeE--EEeccCCeEEeCCCCcceEeeccC
Confidence 5678999999887775 443 568999999999999999985444
No 72
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=82.99 E-value=1.6 Score=40.43 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=29.6
Q ss_pred ccccccCc---------ceEEEEE-eceEEEEEE---e-CCCcEEEEEEecCCEEEeCCCCcc
Q 025302 95 FEEHLHTD---------EEIRYCV-AGSGYFDVR---D-RNEKWIRIWVKKGGMIVLPAGCYH 143 (255)
Q Consensus 95 ~~EH~H~d---------dEIryIl-eGsG~Fdvr---d-~dd~wirI~ve~GDLIvVPAGt~H 143 (255)
|..|+|+. ||++|+. ...-=|.++ . ....--.+.++-||.+++|.| +|
T Consensus 166 yPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~~V~~~d~V~iP~g-yH 227 (261)
T PF04962_consen 166 YPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHYVVRNGDAVLIPSG-YH 227 (261)
T ss_dssp -SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEEEEETTEEEEESTT-B-
T ss_pred cCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEEEEECCCEEEeCCC-CC
Confidence 88999999 8999984 322114441 1 111122467999999999999 78
No 73
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.06 E-value=4.3 Score=40.09 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=37.9
Q ss_pred CcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCC
Q 025302 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (255)
Q Consensus 101 ~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~ 151 (255)
+.||+.++-.|+..|.-+ - + .+.+++||+.+||.|+.-|...-+..
T Consensus 145 Dge~Livpq~G~l~l~te-~-G---~l~v~pgeiavIPRG~~frve~~~~~ 190 (427)
T COG3508 145 DGELLIVPQQGELRLKTE-L-G---VLEVEPGEIAVIPRGTTFRVELKDGE 190 (427)
T ss_pred CCCEEEEeecceEEEEEe-e-c---eEEecCCcEEEeeCCceEEEEecCCc
Confidence 349999999999998776 2 2 58999999999999999888774444
No 74
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=80.02 E-value=3.9 Score=40.37 Aligned_cols=55 Identities=22% Similarity=0.424 Sum_probs=43.0
Q ss_pred cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecC
Q 025302 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~ 161 (255)
..-|..+++|+|+.... .++ .+.+++||.+.|||...=.|..++++ ++.-|-|..
T Consensus 353 ~~SIllv~~G~g~l~~~-t~~---~~~v~rG~V~fI~a~~~i~~~~~sd~-~~~yrAf~~ 407 (411)
T KOG2757|consen 353 GPSILLVLKGSGILKTD-TDS---KILVNRGDVLFIPANHPIHLSSSSDP-FLGYRAFSN 407 (411)
T ss_pred CceEEEEEecceEEecC-CCC---ceeeccCcEEEEcCCCCceeeccCcc-eeeeecccc
Confidence 46799999999998764 133 47899999999999999888877766 666666654
No 75
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=78.24 E-value=16 Score=31.97 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=41.8
Q ss_pred cccc---cCcceEEEEEeceEEEEEEeC--C----CcEEEEEEec--CCEEEeCCCCcccceeCCCC
Q 025302 96 EEHL---HTDEEIRYCVAGSGYFDVRDR--N----EKWIRIWVKK--GGMIVLPAGCYHRFTLDTDN 151 (255)
Q Consensus 96 ~EH~---H~ddEIryIleGsG~Fdvrd~--d----d~wirI~ve~--GDLIvVPAGt~HrFtl~~~~ 151 (255)
..|. |.......++.|+.+--+-|. + ++|..+.+.+ +-.|.||+|.-|-|..-+++
T Consensus 58 GlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~ 124 (176)
T TIGR01221 58 GLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE 124 (176)
T ss_pred EEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC
Confidence 3555 457899999999987555442 2 5788888887 55999999999999754443
No 76
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=77.98 E-value=1.1 Score=41.47 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=18.4
Q ss_pred EEEEecCCEEEeCCCCcccc
Q 025302 126 RIWVKKGGMIVLPAGCYHRF 145 (255)
Q Consensus 126 rI~ve~GDLIvVPAGt~HrF 145 (255)
.+.+++||.|.||||+.|-.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred ccccCCCCEEEeCCCCcccc
Confidence 58899999999999999974
No 77
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=77.73 E-value=1.5 Score=41.95 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.5
Q ss_pred EEEEecCCEEEeCCCCccccee
Q 025302 126 RIWVKKGGMIVLPAGCYHRFTL 147 (255)
Q Consensus 126 rI~ve~GDLIvVPAGt~HrFtl 147 (255)
+|.++|||.+.|||||.|-.--
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred EEecCCCCEEEecCCCceeecc
Confidence 6899999999999999996643
No 78
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=75.58 E-value=7.7 Score=35.77 Aligned_cols=26 Identities=31% Similarity=0.587 Sum_probs=18.7
Q ss_pred EEEEecCCEEEeCCCCcccceeCCCC
Q 025302 126 RIWVKKGGMIVLPAGCYHRFTLDTDN 151 (255)
Q Consensus 126 rI~ve~GDLIvVPAGt~HrFtl~~~~ 151 (255)
.|.+.||+-|.+|+|++|+|-..+..
T Consensus 155 ~l~L~PGESiTL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 155 QLRLNPGESITLPPGIYHWFWGEGGD 180 (225)
T ss_dssp EEEE-TT-EEEE-TTEEEEEEE-TTS
T ss_pred eEEeCCCCeEeeCCCCeeeEEecCCC
Confidence 46788999999999999999886655
No 79
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=72.77 E-value=24 Score=31.19 Aligned_cols=57 Identities=19% Similarity=0.369 Sum_probs=42.4
Q ss_pred cccccC--cceEEEEEeceEEEEEEeC--CC----cEEEEEEecC--CEEEeCCCCcccceeCCCCc
Q 025302 96 EEHLHT--DEEIRYCVAGSGYFDVRDR--NE----KWIRIWVKKG--GMIVLPAGCYHRFTLDTDNY 152 (255)
Q Consensus 96 ~EH~H~--ddEIryIleGsG~Fdvrd~--dd----~wirI~ve~G--DLIvVPAGt~HrFtl~~~~~ 152 (255)
..|.|. ..+...++.|+.+.-+.|. +. +|.-+.+.+. -+|.||+|.-|-|..-++.-
T Consensus 59 GlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~ 125 (173)
T COG1898 59 GLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA 125 (173)
T ss_pred EEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce
Confidence 356664 4689999999987666553 33 5888888766 78999999999997655543
No 80
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=71.66 E-value=4 Score=37.26 Aligned_cols=28 Identities=29% Similarity=0.486 Sum_probs=24.0
Q ss_pred EEEEEEecCCEEEeCCCCcccceeCCCC
Q 025302 124 WIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (255)
Q Consensus 124 wirI~ve~GDLIvVPAGt~HrFtl~~~~ 151 (255)
|-.+.++||.-|.+|+|++|||-++...
T Consensus 152 g~~lkL~PGesitL~Pg~~HsFwae~g~ 179 (225)
T COG3822 152 GSQLKLSPGESITLPPGLYHSFWAEEGG 179 (225)
T ss_pred ceeEEECCCCcEecCCCceeeeeecCCc
Confidence 3467899999999999999999887665
No 81
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=70.48 E-value=3.7 Score=31.78 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=18.1
Q ss_pred cEEEEEEecCCEEEeCCCCccccee
Q 025302 123 KWIRIWVKKGGMIVLPAGCYHRFTL 147 (255)
Q Consensus 123 ~wirI~ve~GDLIvVPAGt~HrFtl 147 (255)
.++.+..++||||+-|+-+.|.-..
T Consensus 64 ~~~~~~p~~G~lvlFPs~l~H~v~p 88 (101)
T PF13759_consen 64 PYYIVEPEEGDLVLFPSWLWHGVPP 88 (101)
T ss_dssp SEEEE---TTEEEEEETTSEEEE--
T ss_pred ceEEeCCCCCEEEEeCCCCEEeccC
Confidence 4778999999999999999998654
No 82
>COG1741 Pirin-related protein [General function prediction only]
Probab=68.15 E-value=15 Score=34.44 Aligned_cols=66 Identities=24% Similarity=0.356 Sum_probs=45.9
Q ss_pred cccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCC--Ccccc-ee-CCCCcEEEEEEecCCC
Q 025302 94 FFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAG--CYHRF-TL-DTDNYIKAMRLFVGDP 163 (255)
Q Consensus 94 F~~EH~H~d-dEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAG--t~HrF-tl-~~~~~vkAiRlF~~~~ 163 (255)
.|.+|.|.+ |=+-|+++|+... +|..+. .-.+.+||+-..=|| |.|.= .. .+...+..+.++...|
T Consensus 56 ~f~pHPHrg~etvTyvl~G~i~H--rDS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~lP 126 (276)
T COG1741 56 GFPPHPHRGLETVTYVLDGEIEH--RDSLGN--KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNLP 126 (276)
T ss_pred cCCCCCCCCcEEEEEEEccEEEE--eecCCc--eeeecccceeEEcCCCceeecccCCccCCCccceeeeecCCc
Confidence 699999998 6678999999775 444443 245789999766665 77853 23 3445677777766553
No 83
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=67.32 E-value=12 Score=34.62 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=29.8
Q ss_pred cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCccc
Q 025302 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHR 144 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~Hr 144 (255)
...+.++++|++.... .++ .+.+++|+-++|||+....
T Consensus 253 ~~~il~v~~G~~~i~~--~~~---~~~l~~G~~~~ipa~~~~~ 290 (302)
T TIGR00218 253 SALILSVLEGSGRIKS--GGK---TLPLKKGESFFIPAHLGPF 290 (302)
T ss_pred CcEEEEEEcceEEEEE--CCE---EEEEecccEEEEccCCccE
Confidence 4678999999998754 222 4778999999999998653
No 84
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=63.34 E-value=5.3 Score=38.97 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.1
Q ss_pred EEEEecCCEEEeCCCCcccceeC
Q 025302 126 RIWVKKGGMIVLPAGCYHRFTLD 148 (255)
Q Consensus 126 rI~ve~GDLIvVPAGt~HrFtl~ 148 (255)
.|.++|||.|.+|||+.|-.-.|
T Consensus 238 ~v~l~pGeaifipAg~~HAyl~G 260 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAYLQG 260 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEEcCC
Confidence 58999999999999999976544
No 85
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=62.71 E-value=31 Score=24.60 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=27.6
Q ss_pred cceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEeC
Q 025302 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLP 138 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~dd~-wirI~ve~GDLIvVP 138 (255)
.+.+++|++|.......+.+++ .....+.+||++-.+
T Consensus 35 ~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (115)
T cd00038 35 ADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGEL 72 (115)
T ss_pred CCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChH
Confidence 3789999999998877755443 555678899987543
No 86
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=60.87 E-value=18 Score=35.42 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=30.5
Q ss_pred cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccc
Q 025302 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRF 145 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrF 145 (255)
...|.++++|++.... .++ .+.+++|+.+.|||+....-
T Consensus 339 ~~~Illv~~G~~~i~~--~~~---~~~l~~G~~~fipa~~~~~~ 377 (389)
T PRK15131 339 SAAILFCVEGEAVLWK--GEQ---QLTLKPGESAFIAANESPVT 377 (389)
T ss_pred CcEEEEEEcceEEEEe--CCe---EEEECCCCEEEEeCCCccEE
Confidence 3689999999999753 233 36799999999999877643
No 87
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=58.82 E-value=6.5 Score=36.56 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=33.9
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEE
Q 025302 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRL 158 (255)
Q Consensus 95 ~~EH~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRl 158 (255)
...|+|+..|=-|+++|+..+...+.++. -.+.+|.++--|+++.|.-..+++.-+..+|-
T Consensus 184 g~i~~h~~~eraVvI~G~~~~~~~~~~~~---~~L~~GSYf~s~~~~~H~~~~~e~~~vlyIRt 244 (251)
T PF14499_consen 184 GRIHTHASNERAVVISGELDYQSYGASNF---GTLDPGSYFGSPGHITHGIFITEDECVLYIRT 244 (251)
T ss_dssp -SEEE--S-EEEEEEEEEEEETTEEEETT---EEEEE-TT-EE--E------EESS-EEEEEEE
T ss_pred CceeccCCceEEEEEEeEEEEeecccCCC---ccccCCcccccCCcccccccccCCCEEEEEEE
Confidence 56899999999999999998855433232 46889999999999999875666666666653
No 88
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.65 E-value=7.5 Score=39.89 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=34.8
Q ss_pred EEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecC
Q 025302 115 FDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (255)
Q Consensus 115 Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~ 161 (255)
|+-+|.+.-++...++|||+|..|.|+-|--++.+.-+-..+-+.+.
T Consensus 371 f~eedlgePV~e~vle~GDllYfPRG~IHQA~t~~~vHSlHvTlSty 417 (629)
T KOG3706|consen 371 FTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTPALVHSLHVTLSTY 417 (629)
T ss_pred CChhHhCCchHHhhcCCCcEEEecCcceeeccccchhceeEEEeehh
Confidence 44444455577888999999999999999988777655555555544
No 89
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=53.91 E-value=62 Score=27.35 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=39.3
Q ss_pred ccccccccCcceEEEEEec-eEEEEEEeCCCcEEEEEEec----CC--EEEeCCCCcccceeCCC
Q 025302 93 NFFEEHLHTDEEIRYCVAG-SGYFDVRDRNEKWIRIWVKK----GG--MIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 93 kF~~EH~H~ddEIryIleG-sG~Fdvrd~dd~wirI~ve~----GD--LIvVPAGt~HrFtl~~~ 150 (255)
.+-.+|.-.-||+++...| ...+.+-+.|+++.++.+.. |. .++||+|+..--.+.+.
T Consensus 52 ~~S~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~ 116 (139)
T PF06172_consen 52 EFSAWHRVDSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPE 116 (139)
T ss_dssp BEEEEEEESSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECES
T ss_pred CCCccEEcCCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCC
Confidence 3566777778999999999 55566656788887777744 33 48999998665433333
No 90
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=53.61 E-value=52 Score=27.41 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=26.7
Q ss_pred ceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEeC
Q 025302 103 EEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLP 138 (255)
Q Consensus 103 dEIryIleGsG~Fdvrd~dd~-wirI~ve~GDLIvVP 138 (255)
+.+++|++|.......+.+|+ .+--.+.+||++--+
T Consensus 27 ~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 27 DMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred CeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 569999999998877766666 333345999998543
No 91
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=52.45 E-value=40 Score=26.22 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=40.4
Q ss_pred hccccccccCc--ceEEEEEeceEEEEEEeCCCc--EEEEEEecCCEEEeCCCCcccceeCCC
Q 025302 92 KNFFEEHLHTD--EEIRYCVAGSGYFDVRDRNEK--WIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (255)
Q Consensus 92 ~kF~~EH~H~d--dEIryIleGsG~Fdvrd~dd~--wirI~ve~GDLIvVPAGt~HrFtl~~~ 150 (255)
+.|...|.=.. =.-.-|++|+..|..-+.++. -..+...+|+.-++|+...|+-..-++
T Consensus 13 ~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 13 AALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 56666664443 244568999999998865322 235789999999999999999875443
No 92
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=52.44 E-value=48 Score=23.14 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=28.8
Q ss_pred cceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEeC
Q 025302 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLP 138 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~dd~-wirI~ve~GDLIvVP 138 (255)
.+.++||++|.......+.+++ -+--.+.+||++-..
T Consensus 17 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~ 54 (91)
T PF00027_consen 17 CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEI 54 (91)
T ss_dssp ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGH
T ss_pred CCEEEEEEECceEEEeceecceeeeecceeeeccccce
Confidence 5899999999999888866665 335678899987544
No 93
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=51.74 E-value=1.3e+02 Score=26.06 Aligned_cols=37 Identities=14% Similarity=-0.024 Sum_probs=27.3
Q ss_pred cceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEeC
Q 025302 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLP 138 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~dd~-wirI~ve~GDLIvVP 138 (255)
.+.+++|++|.......+.+|+ .+--.+.+||++-..
T Consensus 49 ~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 49 PSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred CceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 3789999999998877666655 333457899998654
No 94
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=51.50 E-value=78 Score=27.62 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=31.5
Q ss_pred cceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEeCCCCccccee
Q 025302 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLPAGCYHRFTL 147 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~dd~-wirI~ve~GDLIvVPAGt~HrFtl 147 (255)
.+.+++|++|.......+.+|+ .+--.+.+||++-...+..+.++.
T Consensus 56 ~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~ 102 (230)
T PRK09391 56 ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTA 102 (230)
T ss_pred CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEE
Confidence 3678999999998777656555 344456899998765554444443
No 95
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=51.13 E-value=78 Score=26.46 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=26.9
Q ss_pred cceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEeC
Q 025302 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLP 138 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~dd~-wirI~ve~GDLIvVP 138 (255)
.+.+++|++|.......+.+++ .+--.+.+||++-..
T Consensus 38 ~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 75 (211)
T PRK11753 38 AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGEL 75 (211)
T ss_pred CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeeh
Confidence 4689999999988776655444 444568999997543
No 96
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=51.04 E-value=77 Score=22.49 Aligned_cols=38 Identities=11% Similarity=-0.052 Sum_probs=27.7
Q ss_pred cceEEEEEeceEEEEEEeCCC-cEEEEEEecCCEEEeCC
Q 025302 102 DEEIRYCVAGSGYFDVRDRNE-KWIRIWVKKGGMIVLPA 139 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~dd-~wirI~ve~GDLIvVPA 139 (255)
.+.++++++|.......+.++ ..+.-.+.+||++-...
T Consensus 35 ~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~ 73 (120)
T smart00100 35 GDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELA 73 (120)
T ss_pred CCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhh
Confidence 478999999999887765444 34555778999886544
No 97
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=51.01 E-value=46 Score=26.86 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=31.2
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCC
Q 025302 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (255)
Q Consensus 103 dEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~ 149 (255)
.|+-=|++|+....+.+ ++.| ....+|+-+.|||+..-......
T Consensus 42 ~E~M~vvsG~l~V~lpg-~~ew--~~~~aGesF~VpanssF~v~v~~ 85 (94)
T PF06865_consen 42 PERMEVVSGELEVKLPG-EDEW--QTYSAGESFEVPANSSFDVKVKE 85 (94)
T ss_dssp -EEEEEEESEEEEEETT--SS---EEEETT-EEEE-TTEEEEEEESS
T ss_pred CEEEEEEEeEEEEEcCC-Cccc--EEeCCCCeEEECCCCeEEEEECc
Confidence 68888999999998873 4567 45899999999999876655543
No 98
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=48.89 E-value=49 Score=31.46 Aligned_cols=103 Identities=16% Similarity=0.234 Sum_probs=63.3
Q ss_pred ceEEEEEeceEEEEEEeCCCc-EEEEEEe-cCCE-EEeCCC-CcccceeCCCCcEEEEEEecCCCCeeecCCCCCCcHHH
Q 025302 103 EEIRYCVAGSGYFDVRDRNEK-WIRIWVK-KGGM-IVLPAG-CYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPAR 178 (255)
Q Consensus 103 dEIryIleGsG~Fdvrd~dd~-wirI~ve-~GDL-IvVPAG-t~HrFtl~~~~~vkAiRlF~~~~gWva~~R~~D~~~~R 178 (255)
|.|....+|.-+|.+.|.+++ ...|.+. +|-+ +..|-| +.|.+++...+.+. ..-.++|-+.|--+
T Consensus 55 enI~~~r~g~n~fcI~den~qEILSvt~dda~~YTV~c~g~~~t~~~~~~~~~~v~--------~~~~~~nlt~di~a-- 124 (292)
T PRK15372 55 ENIHSGLHGENYFCILDEDSQEILSVTLDDVGNYTVNCQGYSETHHLTMATEPGVE--------RTDITYNLTSDIDA-- 124 (292)
T ss_pred hhhhcccCCCceEEEEcCCCceeEEEEEcCCCceEEEeCCcceEEEeeccCCCcch--------hccCccccccCCCH--
Confidence 445557888899999988765 6667777 5545 445544 67888877665443 44567777777544
Q ss_pred HHHHHHhhhhhhhHHHHH-HHHHHhhhhHHHhhhhhhcc
Q 025302 179 DMFKISCRRKLVTALSML-LRNLCNSLLIGSIVLALINK 216 (255)
Q Consensus 179 ~~Yl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 216 (255)
.+||..|+.+..++--.- =-.-|+||+ -.++.++-|+
T Consensus 125 ~~yl~el~~~~~i~~kI~~P~~~c~slm-~pVa~fm~~~ 162 (292)
T PRK15372 125 AAYLEELKQNPIINNKIMNPVGQCESLM-TPVSNFMNEK 162 (292)
T ss_pred HHHHHHhhcCchHHhhhcCchhhhHHHH-HHHHHHHHhc
Confidence 369999997776542210 012366654 3344444443
No 99
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=47.04 E-value=48 Score=31.43 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=33.5
Q ss_pred ccccccC-cceEEE-EEe---ceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCc
Q 025302 95 FEEHLHT-DEEIRY-CVA---GSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNY 152 (255)
Q Consensus 95 ~~EH~H~-ddEIry-Ile---GsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~ 152 (255)
|..|+|+ +.|++| +-- +.++-..+.. |+.=-+.++-||.+++|+=--|.- .+.++|
T Consensus 191 yPPHkHDrr~E~YlYf~l~~~qrV~h~mG~p-dETrh~~v~n~~aVisP~wsih~g-~gt~~y 251 (276)
T PRK00924 191 MPCHTHDRRMEVYFYFDMPEDARVFHFMGEP-QETRHIVVHNEQAVISPSWSIHSG-VGTSNY 251 (276)
T ss_pred CCCccCCCCcceEEEEEcCCCceEEecCCCc-cceeeEEEECCCEEECCCcceecC-cCcccc
Confidence 7899999 456655 221 2222222212 222137899999999999888854 344454
No 100
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=46.06 E-value=8.7 Score=37.90 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=20.2
Q ss_pred EEEEecCCEEEeCCCCcccceeC
Q 025302 126 RIWVKKGGMIVLPAGCYHRFTLD 148 (255)
Q Consensus 126 rI~ve~GDLIvVPAGt~HrFtl~ 148 (255)
...++|||++.||+|..|.-.+.
T Consensus 180 d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 180 DEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred hhhcCCCceeecCCCCCcCCccc
Confidence 45689999999999999998765
No 101
>PRK10579 hypothetical protein; Provisional
Probab=45.30 E-value=74 Score=25.77 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=34.2
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeC
Q 025302 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLD 148 (255)
Q Consensus 103 dEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~ 148 (255)
.|+-=|++|+....+.+ ++.| ....+|+-+.|||+..-.-...
T Consensus 42 ~E~MeivsG~l~V~Lpg-~~ew--~~~~aG~sF~VpanssF~l~v~ 84 (94)
T PRK10579 42 PEEMTVISGALNVLLPG-ATDW--QVYEAGEVFNVPGHSEFHLQVA 84 (94)
T ss_pred cEEEEEEeeEEEEECCC-Cccc--EEeCCCCEEEECCCCeEEEEEC
Confidence 68888999999988864 4567 5689999999999987655443
No 102
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=44.79 E-value=1.4e+02 Score=23.21 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=35.3
Q ss_pred CcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecCCC
Q 025302 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDP 163 (255)
Q Consensus 101 ~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~~ 163 (255)
..+=..|+++|++.+ . ++. ..+++|+++++..|..=.++.++ ...+.+ |+.++|
T Consensus 19 ~~~~~iyv~~G~~~v--~--~~~---~~~~~~~~~~l~~g~~i~~~a~~-~~a~~l-ll~GeP 72 (104)
T PF05726_consen 19 GHNAFIYVLEGSVEV--G--GEE---DPLEAGQLVVLEDGDEIELTAGE-EGARFL-LLGGEP 72 (104)
T ss_dssp T-EEEEEEEESEEEE--T--TTT---EEEETTEEEEE-SECEEEEEESS-SSEEEE-EEEE--
T ss_pred CCEEEEEEEECcEEE--C--CCc---ceECCCcEEEECCCceEEEEECC-CCcEEE-EEEccC
Confidence 346778999999764 2 222 56899999999988777777774 334444 666655
No 103
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=42.29 E-value=1.1e+02 Score=26.35 Aligned_cols=35 Identities=3% Similarity=0.010 Sum_probs=25.0
Q ss_pred cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEE
Q 025302 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIV 136 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIv 136 (255)
.+.+++|++|.......+.+++.+--.+.+||++-
T Consensus 48 ~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 48 ADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI 82 (236)
T ss_pred cceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh
Confidence 37899999999987665444444445678888764
No 104
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=41.82 E-value=17 Score=23.59 Aligned_cols=17 Identities=53% Similarity=0.680 Sum_probs=14.1
Q ss_pred hhhhHHHhhhhhhcccc
Q 025302 202 NSLLIGSIVLALINKET 218 (255)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ 218 (255)
--+|.|-.|+||||.|+
T Consensus 12 v~lLlgYLvyALi~aE~ 28 (29)
T PRK14748 12 VFLLLGYLVYALINAEA 28 (29)
T ss_pred HHHHHHHHHHHHhCccc
Confidence 34678999999999985
No 105
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=41.77 E-value=41 Score=31.45 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=32.8
Q ss_pred eEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCC
Q 025302 104 EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (255)
Q Consensus 104 EIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~ 151 (255)
=+.++.+|.... +..++.+ +.+.+|.+|++|.+..|.+...+..
T Consensus 40 ~li~v~~G~~~i--~~~~g~~--l~i~~p~~~~~p~~~~~~~~~~~~~ 83 (291)
T PRK15186 40 VLIKLTTGKISI--TTSSGEY--ITASGPMLIFLAKDQTIHITMEETH 83 (291)
T ss_pred EEEEeccceEEE--EeCCCce--EEeCCCeEEEEeCCcEEEEEecccC
Confidence 456777777654 4344544 7799999999999999999876643
No 106
>PLN02288 mannose-6-phosphate isomerase
Probab=38.55 E-value=49 Score=32.59 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=29.9
Q ss_pred cCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCc
Q 025302 100 HTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCY 142 (255)
Q Consensus 100 H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~ 142 (255)
++...|.++++|++..... ++. ..+.+++|+.+.|||+..
T Consensus 352 ~~gp~Illv~~G~~~i~~~--~~~-~~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 352 VPGPSVFLVIEGEGVLSTG--SSE-DGTAAKRGDVFFVPAGTE 391 (394)
T ss_pred CCCCEEEEEEcCEEEEecC--Ccc-ceEEEeceeEEEEeCCCc
Confidence 3456899999999997543 222 236789999999999754
No 107
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=38.12 E-value=71 Score=30.79 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=51.4
Q ss_pred HHHHHHhcCCCeeeEEEECCCCCCC-------hHHHhhcc--cccc--------ccCcceEEEEEeceEEEEEEeCCCcE
Q 025302 62 LKKIREDRGYSYMDFCEVCPEKLPN-------YEEKIKNF--FEEH--------LHTDEEIRYCVAGSGYFDVRDRNEKW 124 (255)
Q Consensus 62 ld~L~~erGY~~~DvVtlsp~~~Pn-------~e~k~~kF--~~EH--------~H~ddEIryIleGsG~Fdvrd~dd~w 124 (255)
+.+|++-.-++..|+.++... |. +....+.| +.+- .+....|.++++|+|.... +++
T Consensus 205 ~~~lr~l~~~k~~~~~~~~~~--~~~~~~~~~~~v~~~~F~l~~~~i~~~~~~~~~~~~~il~v~eG~~~l~~---~~~- 278 (312)
T COG1482 205 IGELRELHLFKAKDVITLPTQ--PRKQGAELTYPVPNEDFALYKWDISGTAEFIKQESFSILLVLEGEGTLIG---GGQ- 278 (312)
T ss_pred chhHHhhhhccccchhhcCCc--ccccCceEEEeccccceEEEEEeccChhhhccCCCcEEEEEEcCeEEEec---CCE-
Confidence 467788888888898888522 11 11111112 1111 2335789999999998654 344
Q ss_pred EEEEEecCCEEEeCCCCcccceeC
Q 025302 125 IRIWVKKGGMIVLPAGCYHRFTLD 148 (255)
Q Consensus 125 irI~ve~GDLIvVPAGt~HrFtl~ 148 (255)
...+++|+-++|||...-+.--+
T Consensus 279 -~~~l~~G~s~~ipa~~~~~~i~g 301 (312)
T COG1482 279 -TLKLKKGESFFIPANDGPYTIEG 301 (312)
T ss_pred -EEEEcCCcEEEEEcCCCcEEEEe
Confidence 47799999999999977654433
No 108
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=34.77 E-value=65 Score=27.67 Aligned_cols=56 Identities=27% Similarity=0.420 Sum_probs=40.1
Q ss_pred CcceEEEEE----eceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecCCCCeee
Q 025302 101 TDEEIRYCV----AGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 167 (255)
Q Consensus 101 ~ddEIryIl----eGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~~gWva 167 (255)
+.+|++-.+ .|+..+.+-|..+ -.++|||.|-+-.|..--|. -.++||.+..||+.
T Consensus 34 dg~~v~~~kVaD~TgsI~isvW~e~~----~~~~PGDIirLt~Gy~Si~q-------g~LtL~~GK~Ge~~ 93 (134)
T KOG3416|consen 34 DGHEVRSCKVADETGSINISVWDEEG----CLIQPGDIIRLTGGYASIFQ-------GCLTLYVGKGGEVQ 93 (134)
T ss_pred CCCEEEEEEEecccceEEEEEecCcC----cccCCccEEEecccchhhhc-------CceEEEecCCceEe
Confidence 346888776 4677788876433 45789999998888655443 26788888888874
No 109
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=33.67 E-value=41 Score=23.21 Aligned_cols=19 Identities=42% Similarity=0.492 Sum_probs=14.6
Q ss_pred HHHHHHhhhhHHH-hhhhhh
Q 025302 196 LLRNLCNSLLIGS-IVLALI 214 (255)
Q Consensus 196 ~~~~~~~~~~~~~-~~~~~~ 214 (255)
-|.|..+||+.|. +|+..|
T Consensus 4 SL~nfl~Sl~aG~~iVv~~i 23 (39)
T PF06596_consen 4 SLSNFLLSLVAGAVIVVIPI 23 (39)
T ss_dssp HHHHHHHHHHHHH-HHHHHH
T ss_pred hHHHHHHHHHhhhhhhhhhh
Confidence 4679999999999 666543
No 110
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=32.77 E-value=1.8e+02 Score=24.91 Aligned_cols=36 Identities=8% Similarity=-0.039 Sum_probs=26.2
Q ss_pred cceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEe
Q 025302 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVL 137 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~dd~-wirI~ve~GDLIvV 137 (255)
.+.+++|++|.......+.+++ .+--...+||++-.
T Consensus 55 ~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 55 LKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred cceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 3779999999998777665554 34444589999854
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=31.23 E-value=7.1e+02 Score=26.99 Aligned_cols=144 Identities=18% Similarity=0.249 Sum_probs=79.7
Q ss_pred CeEE-EEeCCCCcCCHHHHHHHHHhc----CCCeeeEEEECCCCCCChHHHhhccccccccCcceEEEEEece---EEEE
Q 025302 45 GVLS-WRLDADNYETDEELKKIREDR----GYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGS---GYFD 116 (255)
Q Consensus 45 GV~y-w~~d~~~~e~~~~ld~L~~er----GY~~~DvVtlsp~~~Pn~e~k~~kF~~EH~H~ddEIryIleGs---G~Fd 116 (255)
|+.+ |..+.+....+++|+++-++. --++.++=-+..+.+|.++.+.+ ---.+-+.+.|-+|+ +|-.
T Consensus 280 G~VrVfT~~k~R~As~evl~afd~~v~s~~~~kt~~~g~v~~~~lPg~e~L~s-----pGt~dGq~~~Vr~~~~v~ayqw 354 (745)
T KOG0301|consen 280 GRVRVFTVDKDRKASDEVLKAFDAEVVSQISSKTEEVGGVKKDDLPGLEILKS-----PGTRDGQTKVVRDGENVEAYQW 354 (745)
T ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhhhhhhhhhhCccccccCCchhhhcC-----CCCCCCcEEEEEcCCcceeEEe
Confidence 5555 777755545677777666555 22222333345556777666432 122357888898888 6655
Q ss_pred EEeCCCcEEEEEEecCCEE----EeCCCCcc-cceeCCCCcEEEEEEecCCCCee-ecCCCCCCcHHHHHHHHHhh---h
Q 025302 117 VRDRNEKWIRIWVKKGGMI----VLPAGCYH-RFTLDTDNYIKAMRLFVGDPVWT-PFNRPHDHLPARDMFKISCR---R 187 (255)
Q Consensus 117 vrd~dd~wirI~ve~GDLI----vVPAGt~H-rFtl~~~~~vkAiRlF~~~~gWv-a~~R~~D~~~~R~~Yl~~~~---~ 187 (255)
.. .+.+|+ ||.| --+-|..- -|.-.+=+|+--+-+-.++|-.. ||||+++--.+=+++|+.-+ .
T Consensus 355 s~-~e~r~i------kdvig~~~~~~~~s~K~l~EGKeYDyvF~VDi~dGep~~kLPyN~sdnPy~AA~~FL~k~~Lp~s 427 (745)
T KOG0301|consen 355 SN-GEWRWI------KDVIGEVVAAQGNSGKVLHEGKEYDYVFDVDIGDGEPPYKLPYNVSDNPYQAAQKFLEKNQLPVS 427 (745)
T ss_pred ec-ccceee------ccccccccccCCCCcceeecccccceEEEEEccCCCCceecCcCCCCCHHHHHHHHHHHccCCHH
Confidence 44 333343 3544 11222211 12233336666677777666554 99998876666666666544 2
Q ss_pred hhhhHHHHHHHHH
Q 025302 188 KLVTALSMLLRNL 200 (255)
Q Consensus 188 ~~~~~~~~~~~~~ 200 (255)
-+++...|+++|.
T Consensus 428 y~dqvv~FI~kNt 440 (745)
T KOG0301|consen 428 YRDQVVKFILKNT 440 (745)
T ss_pred HHHHHHHHHHHhc
Confidence 3445566777775
No 112
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=30.07 E-value=1.1e+02 Score=25.04 Aligned_cols=35 Identities=6% Similarity=0.083 Sum_probs=26.1
Q ss_pred ceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEe
Q 025302 103 EEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVL 137 (255)
Q Consensus 103 dEIryIleGsG~Fdvrd~dd~-wirI~ve~GDLIvV 137 (255)
+.+++|++|.......+.+|+ .+--.+.+||++-.
T Consensus 12 ~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 12 EKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 679999999998877666555 33445799998743
No 113
>PLN02868 acyl-CoA thioesterase family protein
Probab=29.97 E-value=2e+02 Score=27.71 Aligned_cols=36 Identities=8% Similarity=0.072 Sum_probs=26.9
Q ss_pred cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEe
Q 025302 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVL 137 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvV 137 (255)
-+.+++|++|+......+.+++.+--.+++||++-.
T Consensus 49 ~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 49 GDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred CceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 368999999999877765555544446789999874
No 114
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=28.39 E-value=2.8e+02 Score=23.44 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=32.3
Q ss_pred cceEEEEEeceEEEEEEeC------------C------CcEEEEEEecCCEEEeCCCCcccce
Q 025302 102 DEEIRYCVAGSGYFDVRDR------------N------EKWIRIWVKKGGMIVLPAGCYHRFT 146 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~------------d------d~wirI~ve~GDLIvVPAGt~HrFt 146 (255)
.-.|-|+++|+=.+++... + +....+.+++|++++..++-.|+..
T Consensus 65 YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 65 YFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred EEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 4778888888877766521 0 1112578889999999999999886
No 115
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=28.04 E-value=1.3e+02 Score=24.37 Aligned_cols=39 Identities=10% Similarity=0.085 Sum_probs=29.6
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEE-EEecCCEEEeCCCC
Q 025302 103 EEIRYCVAGSGYFDVRDRNEKWIRI-WVKKGGMIVLPAGC 141 (255)
Q Consensus 103 dEIryIleGsG~Fdvrd~dd~wirI-~ve~GDLIvVPAGt 141 (255)
+-+++|++|.........+++...+ .+.+||++-.++-.
T Consensus 42 ~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~ 81 (214)
T COG0664 42 DSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALL 81 (214)
T ss_pred ceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHh
Confidence 4489999999988888666664444 48899999777644
No 116
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=26.95 E-value=40 Score=35.36 Aligned_cols=46 Identities=37% Similarity=0.638 Sum_probs=37.5
Q ss_pred hhhHHHhhhhhhcccceee--eehhHhhhhcchhh--hhhhhhhhhhhhh
Q 025302 203 SLLIGSIVLALINKETSVY--MVCLCLRLLELPVW--FNCLCSISACLVA 248 (255)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 248 (255)
.||.|-.++..|-.||.++ +--+|.|.-.=|+| .+|+|.++|.+-+
T Consensus 236 ~LLfGmMilv~ilseTg~FdYlav~ayriSrG~~w~li~~Lclvtav~Sa 285 (685)
T KOG2639|consen 236 GLLFGMMILVAILSETGVFDYLAVLAYRISRGHVWPLICLLCLVTAVLSA 285 (685)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHhcCCchHHHHHHHHHHHHHHH
Confidence 4788999999999999984 55688999999999 5889988875543
No 117
>PLN02288 mannose-6-phosphate isomerase
Probab=26.78 E-value=50 Score=32.57 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=20.4
Q ss_pred EEEEecCCEEEeCCCCcccceeCC
Q 025302 126 RIWVKKGGMIVLPAGCYHRFTLDT 149 (255)
Q Consensus 126 rI~ve~GDLIvVPAGt~HrFtl~~ 149 (255)
.|.++||+-|.+|||+.|-.--|.
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~G~ 275 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLSGE 275 (394)
T ss_pred eEecCCCCEEEecCCCCceecCCC
Confidence 588999999999999999875443
No 118
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=25.83 E-value=2.7e+02 Score=20.42 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=35.0
Q ss_pred EEEeceEEEEEEeCCCc-EEEEEEecCCEEEeCCCCcccceeCCCCcE
Q 025302 107 YCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLPAGCYHRFTLDTDNYI 153 (255)
Q Consensus 107 yIleGsG~Fdvrd~dd~-wirI~ve~GDLIvVPAGt~HrFtl~~~~~v 153 (255)
+-..|.....|.|.+++ .+.-.+++||-..++.+-.=..+++....+
T Consensus 3 l~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i~iGna~~v 50 (77)
T PF13464_consen 3 LTATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRIRIGNAGAV 50 (77)
T ss_pred EEEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEEEEeCCCcE
Confidence 34568888888877764 667778899988888777777777766544
No 119
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=25.42 E-value=61 Score=22.25 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEEecCCEEEeCCCCcccceeCCCCcEEEEEEecCCCCeeec
Q 025302 127 IWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPF 168 (255)
Q Consensus 127 I~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~~~gWva~ 168 (255)
+.+++||+|.|= -..+.+....+.. .+..||+|-
T Consensus 16 Ls~~~Gd~i~v~------~~~~~~~ww~~~~--~g~~G~~P~ 49 (55)
T PF07653_consen 16 LSFKKGDVIEVL------GEKDDDGWWLGEN--NGRRGWFPS 49 (55)
T ss_dssp -EB-TTEEEEEE------EEECSTSEEEEEE--TTEEEEEEG
T ss_pred eEEecCCEEEEE------EeecCCCEEEEEE--CCcEEEEcH
Confidence 778899988774 1122234444433 677899883
No 120
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=24.41 E-value=1.1e+02 Score=19.87 Aligned_cols=19 Identities=47% Similarity=0.602 Sum_probs=14.8
Q ss_pred HHhhhhHHHhhhhhhcccc
Q 025302 200 LCNSLLIGSIVLALINKET 218 (255)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~ 218 (255)
+.--+|.|-.|.||+|.|+
T Consensus 10 llv~lLl~YLvYAL~naE~ 28 (29)
T PRK14750 10 LLVLLLLGYLVYALFNAED 28 (29)
T ss_pred HHHHHHHHHHHHHHcCccc
Confidence 3345678889999999885
No 121
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.98 E-value=1.5e+02 Score=23.98 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=32.7
Q ss_pred cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccce
Q 025302 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (255)
Q Consensus 102 ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFt 146 (255)
..|+.=++.|+..+-+-+ .+.| ....+|+.+.||++-..-..
T Consensus 41 ~~E~Mtvv~Gal~v~lpg-s~dW--q~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 41 APEEMTVVSGALTVLLPG-SDDW--QVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred CceEEEEEeeEEEEEcCC-Cccc--EEecCCceEEcCCCCeEEEE
Confidence 467788999999987763 5667 56899999999998765443
No 122
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=23.50 E-value=82 Score=25.19 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=20.4
Q ss_pred ceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccc
Q 025302 111 GSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRF 145 (255)
Q Consensus 111 GsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrF 145 (255)
|.|+|.+. ++++ .||+++.|.++.+|-
T Consensus 6 ~~g~~~i~---g~~y-----~~~viv~p~~~~~w~ 32 (109)
T cd00248 6 GPGGFRIA---GQVY-----RGPLLVLPDGVVPWD 32 (109)
T ss_pred cCCEEEEC---CEEE-----eeCEEEeCCceeecC
Confidence 45667664 5555 499999999999984
No 123
>TIGR01450 recC exodeoxyribonuclease V, gamma subunit. This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs.
Probab=23.46 E-value=78 Score=34.80 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=41.4
Q ss_pred HHHHHHhcCCCeeeEEEECCCCCCChHHHhhccccccccCcceEEEEEeceEE
Q 025302 62 LKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGY 114 (255)
Q Consensus 62 ld~L~~erGY~~~DvVtlsp~~~Pn~e~k~~kF~~EH~H~ddEIryIleGsG~ 114 (255)
++.+.+..|++.+|++.++|+ +..|...++..|..+.|+...|-|.++....
T Consensus 373 l~ll~~d~~lrprDI~Vm~pd-ie~Y~p~I~aVF~~~~~~~~~IP~~i~d~~~ 424 (1067)
T TIGR01450 373 LALLEEDPTLQPRDIIVMVPD-IDSYAPYIEAVFGQAPVDARFLPYSLSDRRL 424 (1067)
T ss_pred HHHHhhCCCCCccceEEECCC-hHHhhhHHHHHcCCCCCCCCcCCeEecCCcc
Confidence 344555589999999999998 6889999999999988776667777765544
No 124
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=22.87 E-value=3.9e+02 Score=22.21 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=44.6
Q ss_pred cccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccc---eeCCCCcEEEEEEecCC
Q 025302 98 HLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRF---TLDTDNYIKAMRLFVGD 162 (255)
Q Consensus 98 H~H~ddEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrF---tl~~~~~vkAiRlF~~~ 162 (255)
|.-.+-=+.+|+.|+=...+. ++ .....+|+++++|.+++=-. .++++.-+.++++.-+.
T Consensus 19 ~~~y~p~i~~vlQG~K~~~~g---~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ld~ 81 (155)
T PF06719_consen 19 PCVYEPSICIVLQGSKRVHLG---DQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLELDP 81 (155)
T ss_pred ceecCCeEEEEEeeeEEEEEC---Cc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEEcCH
Confidence 333456789999998877774 33 36799999999999976543 45677778999997553
No 125
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=22.63 E-value=1.4e+02 Score=22.75 Aligned_cols=12 Identities=25% Similarity=1.193 Sum_probs=8.5
Q ss_pred EEEEecCCEEEe
Q 025302 126 RIWVKKGGMIVL 137 (255)
Q Consensus 126 rI~ve~GDLIvV 137 (255)
+|.+.+||.+.|
T Consensus 36 ~iwI~~GD~V~V 47 (77)
T cd05793 36 RVWINEGDIVLV 47 (77)
T ss_pred cEEEcCCCEEEE
Confidence 366777888776
No 126
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=22.27 E-value=2.9e+02 Score=20.18 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=37.4
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCcccceeCCCCcEEEEEEecC
Q 025302 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (255)
Q Consensus 103 dEIryIleGsG~Fdvrd~dd~wirI~ve~GDLIvVPAGt~HrFtl~~~~~vkAiRlF~~ 161 (255)
.-...+.+|+.+|++....... +.++.++..+...|+.-+...+....-..+..+.+
T Consensus 39 ~~~~~L~~G~~~~~~~~~~~~~--~~V~T~~~~i~v~GT~f~v~v~~~~~~~~v~v~~G 95 (98)
T PF04773_consen 39 PTRLRLLSGEILFDVSPGKKRP--FEVRTPTATIGVRGTRFSVRVDAEDGSTRVAVLEG 95 (98)
T ss_pred ceEEEEcCCCEEEEEcccCCCC--EEEEeCCEEEEEecCEEEEEEECCCCcEEEEEEee
Confidence 4456779999999998433322 56777888888999865445544444445555544
No 127
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=21.74 E-value=44 Score=31.47 Aligned_cols=16 Identities=38% Similarity=0.737 Sum_probs=14.5
Q ss_pred EEecCCEEEeCCCCcc
Q 025302 128 WVKKGGMIVLPAGCYH 143 (255)
Q Consensus 128 ~ve~GDLIvVPAGt~H 143 (255)
..++||.|.||+|+|+
T Consensus 7 ~A~~GDtI~l~~G~Y~ 22 (314)
T TIGR03805 7 AAQPGDTIVLPEGVFQ 22 (314)
T ss_pred hCCCCCEEEECCCEEE
Confidence 3679999999999998
No 128
>PF10983 DUF2793: Protein of unknown function (DUF2793); InterPro: IPR021251 This entry is represented by Bacteriophage D3112, Orf54. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.20 E-value=2.2e+02 Score=22.42 Aligned_cols=42 Identities=24% Similarity=0.474 Sum_probs=27.7
Q ss_pred ecCCEEEeCCCCcccceeCCCCcEE-----EEEEecCCCCeeecCCCC
Q 025302 130 KKGGMIVLPAGCYHRFTLDTDNYIK-----AMRLFVGDPVWTPFNRPH 172 (255)
Q Consensus 130 e~GDLIvVPAGt~HrFtl~~~~~vk-----AiRlF~~~~gWva~~R~~ 172 (255)
..||..+||+|-.=-+ .+.+..+. +.+|+...+||.++.+..
T Consensus 29 ~~Gd~yiv~~~atGaW-aG~~g~iA~~~~g~W~f~~P~~GW~a~v~~~ 75 (87)
T PF10983_consen 29 AEGDRYIVPAGATGAW-AGQDGKIAAWQDGAWRFLTPRPGWRAWVADE 75 (87)
T ss_pred CCCCEEEECCCCCccc-ccCCCCEEEEECCeEEEeCCCCCcEEEEeCC
Confidence 3588888888843211 12233344 378999999999987754
No 129
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=20.97 E-value=1.6e+02 Score=22.87 Aligned_cols=28 Identities=21% Similarity=0.667 Sum_probs=16.5
Q ss_pred eceEEEEEEeCCCcEE----------EEEEecCCEEEe
Q 025302 110 AGSGYFDVRDRNEKWI----------RIWVKKGGMIVL 137 (255)
Q Consensus 110 eGsG~Fdvrd~dd~wi----------rI~ve~GDLIvV 137 (255)
-|.+.|.+...|+..+ +|.+.+||+++|
T Consensus 15 lG~~~~~V~~~dG~~~la~ipgK~Rk~iwI~~GD~VlV 52 (83)
T smart00652 15 LGNGRLEVMCADGKERLARIPGKMRKKVWIRRGDIVLV 52 (83)
T ss_pred cCCCEEEEEECCCCEEEEEEchhhcccEEEcCCCEEEE
Confidence 3566666665444321 356777777776
Done!