BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025303
         (255 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And
           Functionally A Sequence Specific Histone
          Length = 78

 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 47/61 (77%)

Query: 100 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKL 159
           +YVNAKQY  IL+RRQ+RAK E E K+ K R+ YLHESRH+HAM R RG GGRF + K+ 
Sbjct: 5   LYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEK 64

Query: 160 N 160
           +
Sbjct: 65  D 65


>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans
 pdb|4G92|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
          Length = 64

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 43/56 (76%), Gaps = 1/56 (1%)

Query: 100 VYVNAKQYRGILRRRQSRAKAELEKKVI-KARKPYLHESRHQHAMRRARGCGGRFL 154
           +YVNAKQ+  IL+RR +R K E + ++  K RKPYLHESRH HAMRR RG GGRFL
Sbjct: 5   LYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFL 60


>pdb|4DNG|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From
           Bacillus Subtilis Subsp. Subtilis Str. 168
 pdb|4DNG|B Chain B, Crystal Structure Of Putative Aldehyde Dehydrogenase From
           Bacillus Subtilis Subsp. Subtilis Str. 168
          Length = 485

 Score = 30.0 bits (66), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 112 RRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNT 156
           ++  +++  E  K V++  + YLHE+R    M  AR  GG  + +
Sbjct: 57  QKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIKS 101


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.128    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,898,136
Number of Sequences: 62578
Number of extensions: 240801
Number of successful extensions: 306
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 4
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)