Query 025303
Match_columns 255
No_of_seqs 150 out of 227
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 07:39:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 6.7E-38 2.3E-42 232.3 4.8 62 97-158 2-64 (64)
2 1b9w_A Protein (merozoite surf 11.4 53 0.0018 25.9 0.1 21 50-70 68-89 (95)
3 1wr7_A NEDD4-2; all-beta, liga 8.3 2.5E+02 0.0085 17.7 2.5 23 83-105 1-29 (41)
4 1xju_A Lysozyme; secreted inac 8.3 1.8E+02 0.0062 23.4 2.2 26 99-124 128-153 (163)
5 3hde_A Lysozyme; antimicrobial 7.7 2.1E+02 0.0071 23.2 2.3 26 98-123 137-162 (165)
6 2anv_A Lysozyme; direct method 7.6 1.3E+02 0.0043 23.7 0.9 21 99-120 123-143 (146)
7 1qfq_B N36, 36-MER N-terminal 7.0 2.2E+02 0.0076 18.6 1.7 15 111-125 4-18 (35)
8 1xjt_A Lysozyme; open conforma 6.5 2.4E+02 0.0083 23.5 2.2 27 98-124 155-181 (191)
9 2k2w_A Recombination and DNA r 6.0 1.5E+02 0.0052 23.9 0.6 14 96-109 16-29 (118)
10 3q12_A Pantoate--beta-alanine 5.6 1.5E+02 0.0051 26.9 0.4 10 98-107 56-65 (287)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=6.7e-38 Score=232.26 Aligned_cols=62 Identities=61% Similarity=1.011 Sum_probs=58.6
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHHhhhhh-hhcCcchhhhhhHHHhhccCCCCCccccccc
Q 025303 97 EEPVYVNAKQYRGILRRRQSRAKAELEKKVI-KARKPYLHESRHQHAMRRARGCGGRFLNTKK 158 (255)
Q Consensus 97 eePvyVNaKQY~rIlrRRq~RaK~e~~~kl~-k~rkpYlHESRH~HAm~R~RG~gGRFl~~k~ 158 (255)
|+|||||||||++|||||++|||+|++++++ +.||||||||||+|||+|+||+||||||++|
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 6999999999999999999999999999985 8899999999999999999999999999986
No 2
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=11.42 E-value=53 Score=25.88 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=16.9
Q ss_pred cceeec-cCCCCCCcccccccc
Q 025303 50 HSIVLT-SYPYTDPQHVGVITP 70 (255)
Q Consensus 50 ~s~a~~-~yPy~dpyygg~~aa 70 (255)
--|+|+ ..||..|||.|+|-.
T Consensus 68 ~kIvC~C~~~~~~~~~~gvf~~ 89 (95)
T 1b9w_A 68 NEIVCKCTKEGSEPLFEGVFCS 89 (95)
T ss_dssp SCEEEECCSTTEEEEGGGTEEE
T ss_pred CcEEEECCCCCCCcceeeEEec
Confidence 357777 789999999999853
No 3
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=8.34 E-value=2.5e+02 Score=17.69 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCC------CCCCceeechh
Q 025303 83 GMHQARMPLPLE------MEEEPVYVNAK 105 (255)
Q Consensus 83 G~~~~R~pLP~~------~~eePvyVNaK 105 (255)
|-+....+||.. ....+.|||..
T Consensus 1 ~~p~~~~~LP~gWe~~~~~~G~~Yy~n~~ 29 (41)
T 1wr7_A 1 GSPGIQSFLPPGWEMRIAPNGRPFFIDHN 29 (41)
T ss_dssp CTTCCCCSSCTTEEEEECTTSCEEEEETT
T ss_pred CCCCccCCCCCCcEEEEcCCCCEEEEECC
Confidence 345566788873 24589999964
No 4
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=8.29 E-value=1.8e+02 Score=23.43 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=20.4
Q ss_pred ceeechhhhHHHHHHHHHHHHHHHhh
Q 025303 99 PVYVNAKQYRGILRRRQSRAKAELEK 124 (255)
Q Consensus 99 PvyVNaKQY~rIlrRRq~RaK~e~~~ 124 (255)
-+|++-|-..++.+||++.+.+=+.+
T Consensus 128 W~~~gGk~~~GL~~RR~~E~~l~~~~ 153 (163)
T 1xju_A 128 FVNSNGVPLRGLKIRREKERQLCLTG 153 (163)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCEEehhhHHHHHHHHHHHhCC
Confidence 56677788999999999987766543
No 5
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=7.72 E-value=2.1e+02 Score=23.25 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=19.5
Q ss_pred CceeechhhhHHHHHHHHHHHHHHHh
Q 025303 98 EPVYVNAKQYRGILRRRQSRAKAELE 123 (255)
Q Consensus 98 ePvyVNaKQY~rIlrRRq~RaK~e~~ 123 (255)
.-+|++-|-..++.+||++..++=+.
T Consensus 137 ~W~~agGk~~~GLv~RR~~E~~l~l~ 162 (165)
T 3hde_A 137 RWTYAGGKQWKGLMTRREIEREICLW 162 (165)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHTG
T ss_pred HHhhcCCEEchhHHHHHHHHHHHHHc
Confidence 34666778899999999988765443
No 6
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=7.64 E-value=1.3e+02 Score=23.71 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=16.2
Q ss_pred ceeechhhhHHHHHHHHHHHHH
Q 025303 99 PVYVNAKQYRGILRRRQSRAKA 120 (255)
Q Consensus 99 PvyVNaKQY~rIlrRRq~RaK~ 120 (255)
-+|++-| ..++.+||++.+.+
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4566777 88999999887654
No 7
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=6.99 E-value=2.2e+02 Score=18.61 Aligned_cols=15 Identities=40% Similarity=0.537 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhh
Q 025303 111 LRRRQSRAKAELEKK 125 (255)
Q Consensus 111 lrRRq~RaK~e~~~k 125 (255)
-|||++||...++=|
T Consensus 4 ~rrrerra~kqa~wk 18 (35)
T 1qfq_B 4 TRRRERRAEKQAQWK 18 (35)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHhhhh
Confidence 478888875555533
No 8
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=6.52 E-value=2.4e+02 Score=23.47 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=20.6
Q ss_pred CceeechhhhHHHHHHHHHHHHHHHhh
Q 025303 98 EPVYVNAKQYRGILRRRQSRAKAELEK 124 (255)
Q Consensus 98 ePvyVNaKQY~rIlrRRq~RaK~e~~~ 124 (255)
.-+|++-|...++.+||++.+.+=+.+
T Consensus 155 ~W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 155 DFVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HHhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 345667788999999999987666543
No 9
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=6.00 E-value=1.5e+02 Score=23.90 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=11.0
Q ss_pred CCCceeechhhhHH
Q 025303 96 EEEPVYVNAKQYRG 109 (255)
Q Consensus 96 ~eePvyVNaKQY~r 109 (255)
...=||.|+|||.+
T Consensus 16 GKtFvFLn~KQ~kk 29 (118)
T 2k2w_A 16 DKVFLFLNAKQYKK 29 (118)
T ss_dssp TCEEEESCSSTHHH
T ss_pred CCEEEEeCHHHHHH
Confidence 44568999999975
No 10
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=5.60 E-value=1.5e+02 Score=26.93 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=8.3
Q ss_pred Cceeechhhh
Q 025303 98 EPVYVNAKQY 107 (255)
Q Consensus 98 ePvyVNaKQY 107 (255)
--|||||-||
T Consensus 56 VSIFVNP~QF 65 (287)
T 3q12_A 56 VTIFVNPLQF 65 (287)
T ss_dssp EEECCCGGGC
T ss_pred EEeccCcccC
Confidence 3699999995
Done!