Query 025303
Match_columns 255
No_of_seqs 150 out of 227
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 07:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025303.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025303hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8fa_ c.26.1.4 (A:) Pantothe 9.7 34 0.0025 28.3 0.4 10 98-107 48-57 (276)
2 d1ob1c2 g.3.11.4 (C:46-96) Mer 9.7 50 0.0037 21.8 1.2 23 49-71 26-49 (51)
3 d1ihoa_ c.26.1.4 (A:) Pantothe 7.4 49 0.0036 27.4 0.4 11 98-108 53-63 (282)
4 d2a84a1 c.26.1.4 (A:3-288) Pan 6.5 45 0.0033 27.7 -0.3 12 98-109 62-73 (286)
5 d1xjua_ d.2.1.3 (A:) Endolysin 6.0 1.6E+02 0.011 21.0 2.6 25 101-125 130-154 (158)
6 d2huja1 a.24.26.1 (A:1-120) Hy 4.5 3E+02 0.022 20.1 3.4 40 102-141 35-74 (120)
7 d1y7ua1 d.38.1.1 (A:8-171) Acy 4.2 3.7E+02 0.027 19.4 3.7 22 104-125 135-156 (164)
8 d1zuoa1 d.20.1.1 (A:201-362) U 3.9 1.6E+02 0.012 21.4 1.4 28 85-112 133-160 (162)
9 d1z60a1 g.49.1.2 (A:328-386) T 3.6 1.1E+02 0.0077 20.5 -0.0 7 133-139 47-53 (59)
10 d1e0na_ b.72.1.1 (A:) Hypothet 3.6 1.4E+02 0.01 17.2 0.6 10 97-106 10-19 (27)
No 1
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=9.68 E-value=34 Score=28.31 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=8.1
Q ss_pred Cceeechhhh
Q 025303 98 EPVYVNAKQY 107 (255)
Q Consensus 98 ePvyVNaKQY 107 (255)
-.|||||.||
T Consensus 48 vSIFVNP~QF 57 (276)
T d1v8fa_ 48 VSVFVNPLQF 57 (276)
T ss_dssp EEECCCGGGC
T ss_pred EEEEecCccC
Confidence 3689999993
No 2
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=9.67 E-value=50 Score=21.81 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=17.6
Q ss_pred ccceeec-cCCCCCCccccccccC
Q 025303 49 GHSIVLT-SYPYTDPQHVGVITPY 71 (255)
Q Consensus 49 g~s~a~~-~yPy~dpyygg~~aaY 71 (255)
+.-|+|. .-|...|||.|+|-.|
T Consensus 26 skkIvC~Ck~p~~~~~~~GVFCS~ 49 (51)
T d1ob1c2 26 GKKITCECTKPDSYPLFDGIFCSH 49 (51)
T ss_dssp SCCCEEEECSTTCCEEGGGTEECC
T ss_pred cceEEEEecCCCCCcccceEEeec
Confidence 3456765 5588889999999776
No 3
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=7.41 E-value=49 Score=27.45 Aligned_cols=11 Identities=27% Similarity=0.615 Sum_probs=8.6
Q ss_pred CceeechhhhH
Q 025303 98 EPVYVNAKQYR 108 (255)
Q Consensus 98 ePvyVNaKQY~ 108 (255)
-.|||||.||.
T Consensus 53 vSIFVNP~QF~ 63 (282)
T d1ihoa_ 53 VSIFVNPMQFD 63 (282)
T ss_dssp EEECCCGGGCS
T ss_pred EEEEecCccCc
Confidence 36999998863
No 4
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.47 E-value=45 Score=27.67 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=9.3
Q ss_pred CceeechhhhHH
Q 025303 98 EPVYVNAKQYRG 109 (255)
Q Consensus 98 ePvyVNaKQY~r 109 (255)
-.|||||.||.-
T Consensus 62 vSIFVNP~QF~~ 73 (286)
T d2a84a1 62 VSIFVNPMQFGA 73 (286)
T ss_dssp EEECCCCCCTTC
T ss_pred EEEeecccccCc
Confidence 468999999653
No 5
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=5.97 E-value=1.6e+02 Score=21.02 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=18.5
Q ss_pred eechhhhHHHHHHHHHHHHHHHhhh
Q 025303 101 YVNAKQYRGILRRRQSRAKAELEKK 125 (255)
Q Consensus 101 yVNaKQY~rIlrRRq~RaK~e~~~k 125 (255)
+.+-|-..++.+||++.+++=+++.
T Consensus 130 ~~~g~~~~GL~~RR~~E~~L~l~g~ 154 (158)
T d1xjua_ 130 NSNGVPLRGLKIRREKERQLCLTGL 154 (158)
T ss_dssp EETTEECHHHHHHHHHHHHHHHTTT
T ss_pred hcCCEEChhHHHHHHHHHHHHHccc
Confidence 3344557899999999887776654
No 6
>d2huja1 a.24.26.1 (A:1-120) Hypothetical protein Lin2004 {Listeria innocua [TaxId: 1642]}
Probab=4.45 E-value=3e+02 Score=20.08 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=23.1
Q ss_pred echhhhHHHHHHHHHHHHHHHhhhhhhhcCcchhhhhhHH
Q 025303 102 VNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQH 141 (255)
Q Consensus 102 VNaKQY~rIlrRRq~RaK~e~~~kl~k~rkpYlHESRH~H 141 (255)
-.-|=|-..+.....+-+..+..-+...|-+|||++-=..
T Consensus 35 ~~VKPf~d~vd~~l~~W~~~a~~~i~~~rp~y~h~~Qie~ 74 (120)
T d2huja1 35 KDMKPFVDEAKRCADDFLELAIPWVNTERPPYLGELQLRQ 74 (120)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccCCHHHHHH
Confidence 3344455555555555444444444458999999875433
No 7
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=4.17 E-value=3.7e+02 Score=19.38 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhh
Q 025303 104 AKQYRGILRRRQSRAKAELEKK 125 (255)
Q Consensus 104 aKQY~rIlrRRq~RaK~e~~~k 125 (255)
.+.|..-.+|+++|...+.+.+
T Consensus 135 ~~~~~~a~~r~~~R~~r~~~~~ 156 (164)
T d1y7ua1 135 KESHRIAVLRAEQRHIRKAESK 156 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777765555544
No 8
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.88 E-value=1.6e+02 Score=21.42 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCceeechhhhHHHHH
Q 025303 85 HQARMPLPLEMEEEPVYVNAKQYRGILR 112 (255)
Q Consensus 85 ~~~R~pLP~~~~eePvyVNaKQY~rIlr 112 (255)
+.+++++|.+.++--++-|.+.|.+|.|
T Consensus 133 ~~p~~~~~~~~~~y~~~~~~~~y~~~~~ 160 (162)
T d1zuoa1 133 GKARVQFGANKNQYNLARAQQSYNSIVQ 160 (162)
T ss_dssp TTCEECTTCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHhHHHHHHHHh
Confidence 4566777776554334445556766665
No 9
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.58 E-value=1.1e+02 Score=20.53 Aligned_cols=7 Identities=43% Similarity=1.028 Sum_probs=3.1
Q ss_pred chhhhhh
Q 025303 133 YLHESRH 139 (255)
Q Consensus 133 YlHESRH 139 (255)
|+||+.|
T Consensus 47 fiHe~lh 53 (59)
T d1z60a1 47 FVHDSLH 53 (59)
T ss_dssp TTTTTSC
T ss_pred hhhhhhc
Confidence 3444444
No 10
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.57 E-value=1.4e+02 Score=17.24 Aligned_cols=10 Identities=50% Similarity=0.860 Sum_probs=7.9
Q ss_pred CCceeechhh
Q 025303 97 EEPVYVNAKQ 106 (255)
Q Consensus 97 eePvyVNaKQ 106 (255)
..|+|-||.+
T Consensus 10 grpmyynaq~ 19 (27)
T d1e0na_ 10 GRPLYYNAEQ 19 (27)
T ss_dssp SSEEEEETTT
T ss_pred Cceeeeehhh
Confidence 4799999864
Done!