BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025304
         (255 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3O48|A Chain A, Crystal Structure Of Fission Protein Fis1 From
           Saccharomyces Cerevisiae
          Length = 134

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 19/110 (17%)

Query: 43  IVQDGDPSKTIKVPDGFDYELYNRNDIN------RIL--------GPKASCISFKDSACR 88
           +V +G P+ TI+    + + L    D+N      +IL          +  C+ +    C 
Sbjct: 30  VVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY 89

Query: 89  CFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFN 138
             G     K+Y+     D     + + K++ AL+  +++ +     L+F 
Sbjct: 90  KLGEYSMAKRYV-----DTLFEHERNNKQVGALKSMVEDKIQKEENLYFQ 134


>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
 pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
           Aeolicus
 pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
          Length = 600

 Score = 28.1 bits (61), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 105 DDCFVAKDPSGKEINALEQHIKNLL--------SPSTPLFFNTLYDPYREGADFVRGYPF 156
           ++  +A    G  I  + + I N +         P   L F++ YDPYR    FVR +  
Sbjct: 158 EEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDG 217

Query: 157 SLREG 161
            ++ G
Sbjct: 218 EVKPG 222


>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
          Length = 600

 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 130 SPSTPLFFNTLYDPYREGADFVRGYPFSLREG 161
            P   L F++ YDPYR    FVR +   ++ G
Sbjct: 191 KPLKALIFDSYYDPYRGAVAFVRIFDGEVKPG 222


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.143    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,853,463
Number of Sequences: 62578
Number of extensions: 394303
Number of successful extensions: 702
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 4
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)