Query 025304
Match_columns 255
No_of_seqs 119 out of 140
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:28:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03180 reversibly glycosylat 100.0 3.6E-85 7.8E-90 603.8 17.5 247 5-251 2-248 (346)
2 PF03214 RGP: Reversibly glyco 100.0 5.9E-78 1.3E-82 554.8 14.3 241 10-251 4-249 (348)
3 PF00535 Glycos_transf_2: Glyc 98.3 2E-07 4.3E-12 73.8 0.6 94 17-123 1-105 (169)
4 cd06427 CESA_like_2 CESA_like_ 98.1 1.7E-06 3.7E-11 75.7 3.7 95 15-122 2-110 (241)
5 cd06421 CESA_CelA_like CESA_Ce 98.1 4.9E-07 1.1E-11 77.2 0.3 99 15-121 2-109 (234)
6 cd06433 GT_2_WfgS_like WfgS an 98.1 1.4E-06 3.1E-11 71.7 2.5 89 17-115 1-94 (202)
7 PRK10073 putative glycosyl tra 98.0 1.6E-06 3.4E-11 81.0 0.9 97 15-120 7-109 (328)
8 cd04195 GT2_AmsE_like GT2_AmsE 98.0 1.3E-06 2.9E-11 73.1 0.2 94 17-122 1-106 (201)
9 cd02522 GT_2_like_a GT_2_like_ 98.0 7.2E-06 1.6E-10 69.5 4.3 86 16-115 1-91 (221)
10 cd02510 pp-GalNAc-T pp-GalNAc- 98.0 3.9E-06 8.5E-11 76.0 2.7 99 17-124 1-111 (299)
11 PRK10018 putative glycosyl tra 98.0 4.8E-06 1E-10 76.4 3.3 94 15-119 6-108 (279)
12 cd06434 GT2_HAS Hyaluronan syn 98.0 4E-06 8.6E-11 71.9 2.5 97 15-122 1-103 (235)
13 cd04196 GT_2_like_d Subfamily 98.0 1.9E-06 4.2E-11 72.2 0.5 91 17-120 1-103 (214)
14 cd06913 beta3GnTL1_like Beta 1 98.0 2.6E-06 5.6E-11 73.1 1.1 94 18-120 1-108 (219)
15 cd06437 CESA_CaSu_A2 Cellulose 97.9 8.5E-06 1.8E-10 70.4 3.9 91 15-115 2-106 (232)
16 cd06423 CESA_like CESA_like is 97.9 5.6E-06 1.2E-10 65.2 2.4 85 18-115 1-97 (180)
17 cd06420 GT2_Chondriotin_Pol_N 97.9 2.5E-06 5.5E-11 70.2 0.3 83 18-113 1-96 (182)
18 cd04192 GT_2_like_e Subfamily 97.9 5.5E-06 1.2E-10 70.1 2.2 92 18-119 1-105 (229)
19 cd04184 GT2_RfbC_Mx_like Myxoc 97.9 3E-06 6.6E-11 70.8 0.5 97 15-121 2-108 (202)
20 cd06439 CESA_like_1 CESA_like_ 97.9 3.3E-06 7.2E-11 73.4 0.7 100 12-120 27-133 (251)
21 COG0463 WcaA Glycosyltransfera 97.9 2.6E-05 5.6E-10 60.5 5.6 87 13-113 2-99 (291)
22 cd02525 Succinoglycan_BP_ExoA 97.9 4.4E-06 9.6E-11 71.6 1.1 92 16-120 2-105 (249)
23 cd06442 DPM1_like DPM1_like re 97.9 2.6E-06 5.7E-11 72.3 -0.6 94 18-119 1-101 (224)
24 cd02520 Glucosylceramide_synth 97.8 1.3E-05 2.8E-10 68.0 2.9 92 15-115 2-105 (196)
25 cd04186 GT_2_like_c Subfamily 97.8 5.4E-06 1.2E-10 66.2 0.3 85 18-115 1-93 (166)
26 PF13641 Glyco_tranf_2_3: Glyc 97.7 4.9E-06 1.1E-10 71.2 -0.7 94 16-118 3-108 (228)
27 PLN02726 dolichyl-phosphate be 97.7 1.9E-05 4.1E-10 69.4 2.5 100 13-121 8-118 (243)
28 TIGR03469 HonB hopene-associat 97.7 3.8E-05 8.3E-10 72.8 4.6 102 12-122 38-159 (384)
29 cd06435 CESA_NdvC_like NdvC_li 97.7 3.2E-05 7E-10 66.6 3.4 97 17-121 1-109 (236)
30 PRK14583 hmsR N-glycosyltransf 97.6 3.3E-05 7.1E-10 74.6 3.3 89 15-116 76-175 (444)
31 cd06438 EpsO_like EpsO protein 97.6 6.3E-06 1.4E-10 69.0 -1.7 88 18-115 1-100 (183)
32 TIGR03472 HpnI hopanoid biosyn 97.6 4.4E-05 9.4E-10 72.1 3.6 97 14-120 41-150 (373)
33 cd04179 DPM_DPG-synthase_like 97.6 1.6E-05 3.5E-10 65.4 0.5 89 18-115 1-98 (185)
34 PRK11204 N-glycosyltransferase 97.6 1.6E-05 3.5E-10 75.4 0.6 95 15-122 55-160 (420)
35 cd04185 GT_2_like_b Subfamily 97.5 5.3E-05 1.1E-09 63.7 2.3 91 18-121 1-104 (202)
36 TIGR03111 glyc2_xrt_Gpos1 puta 97.5 6.3E-05 1.4E-09 72.7 2.5 99 15-122 50-157 (439)
37 PRK10063 putative glycosyl tra 97.4 0.00015 3.3E-09 64.9 4.3 89 15-112 2-98 (248)
38 cd04188 DPG_synthase DPG_synth 97.4 6.6E-05 1.4E-09 64.0 1.6 89 18-115 1-101 (211)
39 cd04187 DPM1_like_bac Bacteria 97.4 2.2E-05 4.7E-10 65.1 -1.8 89 18-119 1-103 (181)
40 cd02511 Beta4Glucosyltransfera 97.3 0.00012 2.6E-09 64.0 1.9 84 15-113 1-88 (229)
41 PTZ00260 dolichyl-phosphate be 97.2 7.7E-05 1.7E-09 69.9 -0.1 92 13-113 69-179 (333)
42 PRK10714 undecaprenyl phosphat 97.2 0.00012 2.6E-09 68.3 0.9 100 12-121 4-115 (325)
43 PRK13915 putative glucosyl-3-p 97.2 0.00013 2.8E-09 67.8 0.8 96 13-115 30-135 (306)
44 cd02526 GT2_RfbF_like RfbF is 97.1 0.00013 2.7E-09 62.7 0.1 86 18-117 1-96 (237)
45 cd04190 Chitin_synth_C C-termi 96.9 0.00044 9.5E-09 61.1 1.5 76 18-121 1-98 (244)
46 cd06436 GlcNAc-1-P_transferase 96.8 0.00055 1.2E-08 58.0 1.6 84 18-113 1-106 (191)
47 PRK11498 bcsA cellulose syntha 96.8 0.00033 7.1E-09 73.6 0.2 91 15-121 261-364 (852)
48 PF10111 Glyco_tranf_2_2: Glyc 96.8 0.00034 7.4E-09 63.6 0.0 84 17-113 1-105 (281)
49 TIGR03030 CelA cellulose synth 96.6 0.0014 3E-08 67.6 2.9 107 15-121 132-253 (713)
50 cd00761 Glyco_tranf_GTA_type G 96.0 0.011 2.4E-07 45.1 4.4 88 18-113 1-94 (156)
51 COG1215 Glycosyltransferases, 95.9 0.0069 1.5E-07 57.0 3.7 90 14-113 54-154 (439)
52 cd02514 GT13_GLCNAC-TI GT13_GL 95.3 0.024 5.1E-07 53.9 4.7 35 16-50 2-43 (334)
53 TIGR01556 rhamnosyltran L-rham 95.2 0.0033 7.2E-08 56.2 -1.2 40 83-122 57-99 (281)
54 COG1216 Predicted glycosyltran 95.1 0.008 1.7E-07 55.1 0.8 98 13-123 2-111 (305)
55 KOG2977 Glycosyltransferase [G 94.8 0.012 2.5E-07 55.1 1.2 89 15-108 68-169 (323)
56 cd04191 Glucan_BSP_ModH Glucan 92.6 0.029 6.2E-07 50.8 -0.5 32 16-47 1-43 (254)
57 cd00218 GlcAT-I Beta1,3-glucur 91.0 0.091 2E-06 47.4 0.9 32 16-47 3-40 (223)
58 PRK14716 bacteriophage N4 adso 90.6 0.32 6.8E-06 48.7 4.4 88 13-113 65-175 (504)
59 KOG1476 Beta-1,3-glucuronyltra 87.7 0.66 1.4E-05 43.9 4.0 36 13-48 86-127 (330)
60 KOG2978 Dolichol-phosphate man 82.9 2.2 4.8E-05 38.2 4.8 89 14-112 3-104 (238)
61 PRK05454 glucosyltransferase M 80.3 1.8 4E-05 45.0 3.9 100 11-115 121-239 (691)
62 PLN02458 transferase, transfer 78.9 1.1 2.3E-05 42.9 1.5 32 16-47 114-153 (346)
63 PRK11234 nfrB bacteriophage N4 71.5 4.4 9.6E-05 42.4 3.9 90 14-112 63-171 (727)
64 PF04583 Baculo_p74: Baculovir 60.2 4.2 9.1E-05 37.4 1.0 20 139-158 122-141 (249)
65 PRK15489 nfrB bacteriophage N4 60.0 13 0.00028 39.0 4.6 86 14-112 71-179 (703)
66 PRK14503 mannosyl-3-phosphogly 56.8 7.8 0.00017 37.7 2.2 95 14-112 51-176 (393)
67 TIGR02460 osmo_MPGsynth mannos 54.5 8.9 0.00019 37.1 2.2 95 14-112 50-175 (381)
68 PF13733 Glyco_transf_7N: N-te 54.4 7.4 0.00016 32.7 1.5 80 3-112 36-127 (136)
69 PF09488 Osmo_MPGsynth: Mannos 44.6 11 0.00024 36.5 1.2 95 14-112 50-175 (381)
70 PRK14502 bifunctional mannosyl 37.7 19 0.0004 37.8 1.7 95 14-112 55-180 (694)
71 PF04666 Glyco_transf_54: N-Ac 36.5 16 0.00035 34.3 0.9 26 96-121 169-194 (297)
72 KOG3737 Predicted polypeptide 34.1 29 0.00062 34.5 2.2 35 84-118 228-262 (603)
73 PF13712 Glyco_tranf_2_5: Glyc 27.8 62 0.0013 28.5 3.1 75 16-121 1-80 (217)
74 TIGR01658 EYA-cons_domain eyes 25.2 77 0.0017 29.5 3.3 24 27-50 217-242 (274)
75 PF11341 DUF3143: Protein of u 22.7 18 0.00039 26.6 -1.1 22 148-169 41-63 (63)
76 PF03360 Glyco_transf_43: Glyc 22.5 46 0.001 29.7 1.3 26 83-108 57-89 (207)
77 cd00899 b4GalT Beta-4-Galactos 21.6 1.3E+02 0.0028 27.1 4.0 33 81-113 47-83 (219)
No 1
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=100.00 E-value=3.6e-85 Score=603.80 Aligned_cols=247 Identities=94% Similarity=1.588 Sum_probs=243.0
Q ss_pred CCCCCCCCCCCeEEEEecccChhHHHhhhhccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCc
Q 025304 5 STKPTPLLKDELDIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKD 84 (255)
Q Consensus 5 ~~~~~~~~~~~v~IVItTi~~p~~L~~~~~~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~~s 84 (255)
+..++++++++++||||||++++||++|+++++++|+|+|+|++.+++++.|+|+++++|+++|++++++.+.++|||+|
T Consensus 2 ~~~~~~~~~~evdIVi~TI~~~~fL~~~r~~l~~~h~iiV~d~D~~~~~~~~~G~d~~vy~r~d~~~~Lg~~~~~Ip~~~ 81 (346)
T PLN03180 2 SVSPAPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKEIKVPEGFDYELYNRNDINRILGPKASCISFKD 81 (346)
T ss_pred CCccCCCCCCcceEEEeccCchhHHHHHHHhcCcccEEEEecCCcccceeccCCCceeecCHHHHHhhhcccccccccCc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeEEEcceEEEeecCCCcccCCCCCccchhhhhhhcccccCCCCcccccccccCcCCCCCcCcccCCCCCCcch
Q 025304 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHT 164 (255)
Q Consensus 85 ~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~~~~~~~l~~~~~~~~~N~ly~~f~~~~~wpRG~Pl~~r~g~~~ 164 (255)
+||||||||+|++|||++|||||+|+++|.|+.+|+++||+.||..|++|+|||+||+||+++++||||||||+|+|+++
T Consensus 82 ~a~R~fGyL~s~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~NL~~pstp~~fNtLYdp~r~g~~fvRGYPfS~R~gv~v 161 (346)
T PLN03180 82 SACRCFGYLVSKKKYIFTIDDDCFVAKDPSGKLINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGVPT 161 (346)
T ss_pred ccchhhhheeecceEEEEECCCCCCCCCCccccccHHHHHHHhcCCCCCCceeecccccCccCCcccCCCCccccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeeccccCCCCCcccccccCCCccCcccccceeeCCCCceeeecceechhhhcccccchhhcccCCCCcccchhhhhhH
Q 025304 165 AVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAG 244 (255)
Q Consensus 165 ~i~qGL~~~~PDvDAi~rl~~~~~~~~~f~~~~v~l~~gt~~p~nsqNtaf~r~a~~pa~~~~~~~~~~~~~R~~DIW~g 244 (255)
+++||||+|+|||||||||+++.|++++|++++||+|+|||+|+|||||||+||++|||||++||++|+.++|++|||+|
T Consensus 162 aiS~GLWln~PD~DA~t~l~k~~e~~t~yvdavvtip~gt~~pv~~~NlAF~ReligPA~y~g~m~~g~~i~R~dDiWsG 241 (346)
T PLN03180 162 AVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAG 241 (346)
T ss_pred EEecccccCCCcccchhhhccchhccceecccEEeccCCCEeecccchhhhhhhhcchhheecccCCCCcccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 025304 245 WCMKVLF 251 (255)
Q Consensus 245 ~~~q~il 251 (255)
||+|++.
T Consensus 242 ~c~K~i~ 248 (346)
T PLN03180 242 WCAKVIC 248 (346)
T ss_pred HHHHHHH
Confidence 9999985
No 2
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=100.00 E-value=5.9e-78 Score=554.83 Aligned_cols=241 Identities=71% Similarity=1.282 Sum_probs=233.3
Q ss_pred CCCCCCeEEEEeccc-Ch-hHHHhhhhccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCcccc
Q 025304 10 PLLKDELDIVIPTIR-NL-DFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSAC 87 (255)
Q Consensus 10 ~~~~~~v~IVItTi~-~p-~~L~~~~~~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~~s~ar 87 (255)
+|+++|++|||+|++ +. +||++||++|+++|||||.|++..++++.|+||+.++|++++.++++|.. .+|||++++|
T Consensus 4 ~~~~~~~divi~~~~~~l~~~~~~wr~~~~~~hliiv~d~~~~~~~~~p~g~~~~~y~~~di~~~lg~~-~~i~~~~~a~ 82 (348)
T PF03214_consen 4 EILDDEVDIVIPALRPNLTDFLEEWRPFFSPYHLIIVQDPDPNEEIKVPEGFDYEVYNRNDIERVLGAK-TLIPFKGDAC 82 (348)
T ss_pred ccccCcccEEeecccccHHHHHHHHHHhhcceeEEEEeCCCccccccCCcccceeeecHhhHHhhcCCc-ccccccccch
Confidence 799999999999999 88 99999999999999999999999999999999999999999999999988 8899999999
Q ss_pred cceeeEEEcceEEEeecCCCcccCCCCCccchhhhhhhcccccCCCCcccccccccCcCCCCCcCcccCCCCCCcchhee
Q 025304 88 RCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHTAVS 167 (255)
Q Consensus 88 RN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~~~~~~~l~~~~~~~~~N~ly~~f~~~~~wpRG~Pl~~r~g~~~~i~ 167 (255)
||||||+|++|||++|||||+|++++.|.+++.+.||+.++..||++.|||+||+||+++++||||||||+|+|++++++
T Consensus 83 R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~~~~st~~~fNtLyd~~~e~~~f~RGyPfS~Regv~~~~s 162 (348)
T PF03214_consen 83 RNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENLSTPSTPFFFNTLYDPYREGADFPRGYPFSLREGVDTAAS 162 (348)
T ss_pred hhhHhhhcccceEEEEccccccccCCccceehhhhccceeeeccCchhhhhhhcccccccCcccCCCCcccccCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCCcccccccCCCccCcccccceeeCCCCceeeecceechhhhcccccchhhcccCCCCcccchh---hhhhH
Q 025304 168 HGLWLNIPDYDAPTQLVKPRERNTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYD---DMWAG 244 (255)
Q Consensus 168 qGL~~~~PDvDAi~rl~~~~~~~~~f~~~~v~l~~gt~~p~nsqNtaf~r~a~~pa~~~~~~~~~~~~~R~~---DIW~g 244 (255)
||||+|+|||||||||+++.+++++|+++++++|+|||+|+|||||||+||+++|+||+.+|+.++.++|++ |||+|
T Consensus 163 ~GLWln~PD~DA~t~l~~~~~r~~~~~d~~~~~p~gt~~pv~s~NlAf~Relip~~~~~~~~~~~~~~~R~d~~gDIWsG 242 (348)
T PF03214_consen 163 AGLWLNVPDLDAPTQLVKPTERNTRYVDAVLTIPRGTYLPVCSMNLAFDRELIPPAYYFPMMGNGWGIGRFDRFGDIWSG 242 (348)
T ss_pred cccccCCcccchhhhhccchhccccccCceEEecCCCEeecccchhhhhhhhcChheecccccCCCcccccccchhHHHH
Confidence 999999999999999999999999999999999999999999999999999996677766677888888888 99999
Q ss_pred HHHHHhh
Q 025304 245 WCMKVLF 251 (255)
Q Consensus 245 ~~~q~il 251 (255)
||+|++.
T Consensus 243 ~f~k~~~ 249 (348)
T PF03214_consen 243 YFLKVIC 249 (348)
T ss_pred HHHHHHH
Confidence 9999985
No 3
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.28 E-value=2e-07 Score=73.85 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=63.2
Q ss_pred EEEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC--CCccc--cc--cCcc
Q 025304 17 DIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG--PKASC--IS--FKDS 85 (255)
Q Consensus 17 ~IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~--~~~~~--lP--~~s~ 85 (255)
+|||||++++ +||+++++. ...+++|||.|. .+++ +.+-.+++.. ....+ .+ .+..
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~------s~d~-------~~~~~~~~~~~~~~i~~i~~~~n~g~~ 67 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDG------STDE-------TEEILEEYAESDPNIRYIRNPENLGFS 67 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-------SSS-------HHHHHHHHHCCSTTEEEEEHCCCSHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccc------cccc-------ccccccccccccccccccccccccccc
Confidence 6999999996 688888876 789999999999 4331 1122222221 11111 11 3578
Q ss_pred cccceeeEEEcceEEEeecCCCcccCCCCCccchhhhh
Q 025304 86 ACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQ 123 (255)
Q Consensus 86 arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~~~ 123 (255)
+.+|.|+-.|.++||+++|||+.+.++++.+.++.+.+
T Consensus 68 ~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 68 AARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp HHHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred ccccccccccceeEEEEeCCCceEcHHHHHHHHHHHHh
Confidence 88999999999999999999999999976666666555
No 4
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=98.14 E-value=1.7e-06 Score=75.68 Aligned_cols=95 Identities=11% Similarity=0.216 Sum_probs=63.3
Q ss_pred CeEEEEecccCh----hHHHhhhhc-cC--CeEEEEEecCCCCcccccCCCccccccChhhhhhhhC---CCccccc---
Q 025304 15 ELDIVIPTIRNL----DFLEMWRPF-FE--PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG---PKASCIS--- 81 (255)
Q Consensus 15 ~v~IVItTi~~p----~~L~~~~~~-~~--~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~---~~~~~lP--- 81 (255)
.++||||++++. ++|+++.+. ++ .+++|||-|....++... .+++.. .....++
T Consensus 2 ~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i-------------~~~~~~~~~~~i~~~~~~~ 68 (241)
T cd06427 2 VYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAA-------------ARALRLPSIFRVVVVPPSQ 68 (241)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHH-------------HHHhccCCCeeEEEecCCC
Confidence 489999999987 688887764 44 489999988722221111 111100 0111122
Q ss_pred -cCcccccceeeEEEcceEEEeecCCCcccCCCCCccchhhh
Q 025304 82 -FKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALE 122 (255)
Q Consensus 82 -~~s~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~~ 122 (255)
.+..+++|.|+..|.++||+++|+|+.+.++++.+.+..+.
T Consensus 69 ~~G~~~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 69 PRTKPKACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred CCchHHHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 23467899999999999999999999999987665555554
No 5
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=98.14 E-value=4.9e-07 Score=77.18 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=59.9
Q ss_pred CeEEEEecccCh-----hHHHhhhhc-cCC--eEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccC-cc
Q 025304 15 ELDIVIPTIRNL-----DFLEMWRPF-FEP--YHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFK-DS 85 (255)
Q Consensus 15 ~v~IVItTi~~p-----~~L~~~~~~-~~~--~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~~-s~ 85 (255)
.++||||++++. +||+++.+. .+. |++|||.|....++.+.-+.+. ..++-+++.. -..-+ ..
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~-----~~~~~~~~~~---~~~~~~~~ 73 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELG-----VEYGYRYLTR---PDNRHAKA 73 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhh-----cccCceEEEe---CCCCCCcH
Confidence 489999999964 477777765 677 9999999883222222111110 0000011100 00111 23
Q ss_pred cccceeeEEEcceEEEeecCCCcccCCCCCccchhh
Q 025304 86 ACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (255)
Q Consensus 86 arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~ 121 (255)
++.|.|+-.|.++||+++|+|+.+.++++.+.+..+
T Consensus 74 ~~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~ 109 (234)
T cd06421 74 GNLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYF 109 (234)
T ss_pred HHHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHH
Confidence 457888888899999999999999988644444443
No 6
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.12 E-value=1.4e-06 Score=71.67 Aligned_cols=89 Identities=11% Similarity=0.061 Sum_probs=58.3
Q ss_pred EEEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCccccccee
Q 025304 17 DIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFG 91 (255)
Q Consensus 17 ~IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~~s~arRN~G 91 (255)
+|||||++++ +||+++.+. .+++++|||.|....++.... .....+.. .....-..+...++|.|
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~--------~~~~~~~~--~~~~~~~~g~~~a~n~~ 70 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDII--------KKYEDKIT--YWISEPDKGIYDAMNKG 70 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHH--------HHhHhhcE--EEEecCCcCHHHHHHHH
Confidence 5899999987 577777765 778999999887222221111 00000000 00111123567888999
Q ss_pred eEEEcceEEEeecCCCcccCCCCC
Q 025304 92 YMVSKKKYIFTIDDDCFVAKDPSG 115 (255)
Q Consensus 92 yL~A~a~~I~~~DDDn~p~~~~~g 115 (255)
+-.|.++||+++|+|+.+.++++.
T Consensus 71 ~~~a~~~~v~~ld~D~~~~~~~~~ 94 (202)
T cd06433 71 IALATGDIIGFLNSDDTLLPGALL 94 (202)
T ss_pred HHHcCCCEEEEeCCCcccCchHHH
Confidence 999999999999999999988533
No 7
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.01 E-value=1.6e-06 Score=80.97 Aligned_cols=97 Identities=24% Similarity=0.308 Sum_probs=63.9
Q ss_pred CeEEEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhh-hhhhhCCCccccccCccccc
Q 025304 15 ELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRND-INRILGPKASCISFKDSACR 88 (255)
Q Consensus 15 ~v~IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~-q~~~l~~~~~~lP~~s~arR 88 (255)
.++||||+++.. +||+++.+. ++++++|||.|+..-.+...-..+ ...+ +-++.. .-.-+..++|
T Consensus 7 ~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~-----~~~~~~i~vi~----~~n~G~~~ar 77 (328)
T PRK10073 7 KLSIIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHY-----AENYPHVRLLH----QANAGVSVAR 77 (328)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHH-----HhhCCCEEEEE----CCCCChHHHH
Confidence 599999999986 577777765 789999999998322221111100 0000 000111 1124577889
Q ss_pred ceeeEEEcceEEEeecCCCcccCCCCCccchh
Q 025304 89 CFGYMVSKKKYIFTIDDDCFVAKDPSGKEINA 120 (255)
Q Consensus 89 N~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~ 120 (255)
|.|.-.|.++||+|+|+|....++.+.+.++.
T Consensus 78 N~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~ 109 (328)
T PRK10073 78 NTGLAVATGKYVAFPDADDVVYPTMYETLMTM 109 (328)
T ss_pred HHHHHhCCCCEEEEECCCCccChhHHHHHHHH
Confidence 99999999999999999999888754444443
No 8
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.00 E-value=1.3e-06 Score=73.09 Aligned_cols=94 Identities=13% Similarity=0.158 Sum_probs=61.1
Q ss_pred EEEEecccCh------hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCC-cccc--c--cCc
Q 025304 17 DIVIPTIRNL------DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK-ASCI--S--FKD 84 (255)
Q Consensus 17 ~IVItTi~~p------~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~-~~~l--P--~~s 84 (255)
+|||||+++. +||+++.+. .+.+++|||.|...... +.+-.+++.... ..++ + .+.
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~------------t~~~~~~~~~~~~i~~i~~~~n~G~ 68 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQS------------LNEVLEEFKRKLPLKVVPLEKNRGL 68 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchh------------HHHHHHHHHhcCCeEEEEcCccccH
Confidence 5899999762 588887765 67899999999721110 000011111100 1111 1 245
Q ss_pred ccccceeeEEEcceEEEeecCCCcccCCCCCccchhhh
Q 025304 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALE 122 (255)
Q Consensus 85 ~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~~ 122 (255)
..++|.|+..|.++||+++|+|..+.++++...++.++
T Consensus 69 ~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~ 106 (201)
T cd04195 69 GKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIE 106 (201)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHH
Confidence 78899999999999999999999999886555555443
No 9
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.98 E-value=7.2e-06 Score=69.50 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=58.2
Q ss_pred eEEEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCcccccce
Q 025304 16 LDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCF 90 (255)
Q Consensus 16 v~IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~~s~arRN~ 90 (255)
++||||+++++ +||+++.+. .+.+++|||.|....++...- ++ ........+.+...++|.
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~-------------~~-~~~~~~~~~~g~~~a~n~ 66 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIA-------------RS-AGVVVISSPKGRARQMNA 66 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHH-------------hc-CCeEEEeCCcCHHHHHHH
Confidence 58999999987 577787765 578999999887221111111 00 000000122345677899
Q ss_pred eeEEEcceEEEeecCCCcccCCCCC
Q 025304 91 GYMVSKKKYIFTIDDDCFVAKDPSG 115 (255)
Q Consensus 91 GyL~A~a~~I~~~DDDn~p~~~~~g 115 (255)
|...|.+++|+++|+|+.+.++|+.
T Consensus 67 g~~~a~~~~i~~~D~D~~~~~~~l~ 91 (221)
T cd02522 67 GAAAARGDWLLFLHADTRLPPDWDA 91 (221)
T ss_pred HHHhccCCEEEEEcCCCCCChhHHH
Confidence 9999999999999999999887633
No 10
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=97.97 E-value=3.9e-06 Score=76.04 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=63.3
Q ss_pred EEEEecccCh-----hHHHhhhhc-cC--CeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc----ccCc
Q 025304 17 DIVIPTIRNL-----DFLEMWRPF-FE--PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI----SFKD 84 (255)
Q Consensus 17 ~IVItTi~~p-----~~L~~~~~~-~~--~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~l----P~~s 84 (255)
+|||||+++. +||+++.+. .+ .++||||.|.....+... ......++. ....+++ ..+-
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~--------~~~~~~~~~-~~~v~vi~~~~n~G~ 71 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKL--------LLEEYYKKY-LPKVKVLRLKKREGL 71 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHH--------HHHHHHhhc-CCcEEEEEcCCCCCH
Confidence 6999999987 467776654 22 369999999822111111 000000010 0112222 2445
Q ss_pred ccccceeeEEEcceEEEeecCCCcccCCCCCccchhhhhh
Q 025304 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQH 124 (255)
Q Consensus 85 ~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~~~~ 124 (255)
.+.+|.|...|.++||+++|+|+.+.++|+...++.+.++
T Consensus 72 ~~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~ 111 (299)
T cd02510 72 IRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAEN 111 (299)
T ss_pred HHHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhC
Confidence 7789999999999999999999999999977777666554
No 11
>PRK10018 putative glycosyl transferase; Provisional
Probab=97.97 E-value=4.8e-06 Score=76.36 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=61.9
Q ss_pred CeEEEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc----ccCcc
Q 025304 15 ELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI----SFKDS 85 (255)
Q Consensus 15 ~v~IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~l----P~~s~ 85 (255)
.++|||||+++. +||+++... ++.|++|||.|.. +. .+. ..+..+++......++ ..+.+
T Consensus 6 ~VSVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS------~~----~~~-~~~~~~~~~~~ri~~i~~~~n~G~~ 74 (279)
T PRK10018 6 LISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCS------TS----WEQ-LQQYVTALNDPRITYIHNDINSGAC 74 (279)
T ss_pred EEEEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCC------CC----HHH-HHHHHHHcCCCCEEEEECCCCCCHH
Confidence 499999999987 467666654 8899999999982 20 000 0011111111111111 24467
Q ss_pred cccceeeEEEcceEEEeecCCCcccCCCCCccch
Q 025304 86 ACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEIN 119 (255)
Q Consensus 86 arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d 119 (255)
+++|.|.-.|.++||+++|+|....++.+...+.
T Consensus 75 ~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~ 108 (279)
T PRK10018 75 AVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLA 108 (279)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHH
Confidence 8899999999999999999999988875443333
No 12
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=97.97 E-value=4e-06 Score=71.92 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=59.0
Q ss_pred CeEEEEecccCh-h----HHHhhhhccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc-ccCccccc
Q 025304 15 ELDIVIPTIRNL-D----FLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI-SFKDSACR 88 (255)
Q Consensus 15 ~v~IVItTi~~p-~----~L~~~~~~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~l-P~~s~arR 88 (255)
+++||||+++++ + ||+++.+.. .+++|||.|....++.... .+..+......... -.+-....
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~-~~eiivvdd~s~d~~~~~l----------~~~~~~~~~~v~~~~~~g~~~a~ 69 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK-PLEIIVVTDGDDEPYLSIL----------SQTVKYGGIFVITVPHPGKRRAL 69 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC-CCEEEEEeCCCChHHHHHH----------HhhccCCcEEEEecCCCChHHHH
Confidence 479999999986 4 666665434 7899999988322211110 00000000000000 02234456
Q ss_pred ceeeEEEcceEEEeecCCCcccCCCCCccchhhh
Q 025304 89 CFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALE 122 (255)
Q Consensus 89 N~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~~ 122 (255)
|.|+..|.++||+++|+|+.+.++++.+.+..+.
T Consensus 70 n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 70 AEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHhCCCEEEEECCCceeChhHHHHHHHhcc
Confidence 7888888999999999999999997555554443
No 13
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.96 E-value=1.9e-06 Score=72.19 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=58.0
Q ss_pred EEEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCC---Ccccc--c--cCc
Q 025304 17 DIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP---KASCI--S--FKD 84 (255)
Q Consensus 17 ~IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~---~~~~l--P--~~s 84 (255)
+|||||+++. +||+++.+. .+.+++|||.|+...++.... +++... ....+ + .+.
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~-------------~~~~~~~~~~~~~~~~~~~~G~ 67 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEII-------------KEYIDKDPFIIILIRNGKNLGV 67 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHH-------------HHHHhcCCceEEEEeCCCCccH
Confidence 5899999987 577777665 678999999998322221111 111111 00111 1 234
Q ss_pred ccccceeeEEEcceEEEeecCCCcccCCCCCccchh
Q 025304 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINA 120 (255)
Q Consensus 85 ~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~ 120 (255)
....|.|+..|.+|||+++|+|....++++.+.++.
T Consensus 68 ~~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 68 ARNFESLLQAADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHHHHHHhCCCCEEEEECCCcccChhHHHHHHHH
Confidence 555677888888999999999999888764444443
No 14
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=97.95 E-value=2.6e-06 Score=73.07 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=58.8
Q ss_pred EEEecccCh----hHHHhhhhc-cC-CeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc--c------cC
Q 025304 18 IVIPTIRNL----DFLEMWRPF-FE-PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI--S------FK 83 (255)
Q Consensus 18 IVItTi~~p----~~L~~~~~~-~~-~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~l--P------~~ 83 (255)
||||++++. +||+++.+. ++ .+++|||.|...-.+...- . +.++++.......+ + .+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~--------~-~~~~~~~~~~~~~~~~~~~~~~~~G 71 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEII--------E-KWRKKLEDSGVIVLVGSHNSPSPKG 71 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHH--------H-HHHHhCcccCeEEEEecccCCCCcc
Confidence 799999987 577777764 55 6999999998222221111 0 01111111111111 1 23
Q ss_pred cccccceeeEEEcceEEEeecCCCcccCCCCCccchh
Q 025304 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINA 120 (255)
Q Consensus 84 s~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~ 120 (255)
..++||.|...|.++||.++|+|..+.++++.+.+..
T Consensus 72 ~~~a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~ 108 (219)
T cd06913 72 VGYAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEA 108 (219)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCChhHHHHHHHH
Confidence 4578899999999999999999999888764433333
No 15
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=97.93 E-value=8.5e-06 Score=70.44 Aligned_cols=91 Identities=14% Similarity=0.262 Sum_probs=55.3
Q ss_pred CeEEEEecccCh----hHHHhhhhc-cC--CeEEEEEecCCCCcccccCCCccccccChhhhhhhh--CCCcccccc---
Q 025304 15 ELDIVIPTIRNL----DFLEMWRPF-FE--PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRIL--GPKASCISF--- 82 (255)
Q Consensus 15 ~v~IVItTi~~p----~~L~~~~~~-~~--~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l--~~~~~~lP~--- 82 (255)
.++||||++++. +||+++.+. .+ .+++|||-|..+. +...- .+.++++. ......+..
T Consensus 2 ~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~-t~~~~---------~~~~~~~~~~~~~i~~~~~~~~ 71 (232)
T cd06437 2 MVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDE-TVRLA---------REIVEEYAAQGVNIKHVRRADR 71 (232)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCc-HHHHH---------HHHHHHHhhcCCceEEEECCCC
Confidence 389999999987 577777764 43 4788887664211 11110 00111111 111111211
Q ss_pred -C-cccccceeeEEEcceEEEeecCCCcccCCCCC
Q 025304 83 -K-DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSG 115 (255)
Q Consensus 83 -~-s~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g 115 (255)
+ ....+|.|+-.|.++||+++|.|+.+.++|+.
T Consensus 72 ~G~k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~ 106 (232)
T cd06437 72 TGYKAGALAEGMKVAKGEYVAIFDADFVPPPDFLQ 106 (232)
T ss_pred CCCchHHHHHHHHhCCCCEEEEEcCCCCCChHHHH
Confidence 1 23467999998999999999999999988643
No 16
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=97.92 E-value=5.6e-06 Score=65.20 Aligned_cols=85 Identities=15% Similarity=0.283 Sum_probs=57.2
Q ss_pred EEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC---CCccc----cccCcc
Q 025304 18 IVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG---PKASC----ISFKDS 85 (255)
Q Consensus 18 IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~---~~~~~----lP~~s~ 85 (255)
|||||++++ +||+++.+. .+.+++|||.|....++.... +++.. ..... =..+..
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~-------------~~~~~~~~~~~~~~~~~~~~g~~ 67 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEIL-------------EELAALYIRRVLVVRDKENGGKA 67 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHH-------------HHHhccccceEEEEEecccCCch
Confidence 689999997 577777665 579999999998332221111 11111 00001 124467
Q ss_pred cccceeeEEEcceEEEeecCCCcccCCCCC
Q 025304 86 ACRCFGYMVSKKKYIFTIDDDCFVAKDPSG 115 (255)
Q Consensus 86 arRN~GyL~A~a~~I~~~DDDn~p~~~~~g 115 (255)
.++|.|+..+.++||.++|+|..+.++++.
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~ 97 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALK 97 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHH
Confidence 888999988899999999999999887533
No 17
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=97.91 E-value=2.5e-06 Score=70.17 Aligned_cols=83 Identities=24% Similarity=0.351 Sum_probs=54.9
Q ss_pred EEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC----CCccc--c--ccCc
Q 025304 18 IVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG----PKASC--I--SFKD 84 (255)
Q Consensus 18 IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~----~~~~~--l--P~~s 84 (255)
||||+++++ +||+++.+. .+.+++|||.|.....+. +..+++.. ..... - .++.
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETK-------------ELIEEFKSQFPIPIKHVWQEDEGFRK 67 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHH-------------HHHHHHHhhcCCceEEEEcCCcchhH
Confidence 799999988 577777665 678999999998211111 00111111 00000 0 1234
Q ss_pred ccccceeeEEEcceEEEeecCCCcccCCC
Q 025304 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (255)
Q Consensus 85 ~arRN~GyL~A~a~~I~~~DDDn~p~~~~ 113 (255)
.+.+|.|+-.|.++||+++|+|+.+.++|
T Consensus 68 ~~~~n~g~~~a~g~~i~~lD~D~~~~~~~ 96 (182)
T cd06420 68 AKIRNKAIAAAKGDYLIFIDGDCIPHPDF 96 (182)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCcccCHHH
Confidence 56789999999999999999999998775
No 18
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.90 E-value=5.5e-06 Score=70.14 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=56.9
Q ss_pred EEEecccCh----hHHHhhhhc-cCC--eEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccC------c
Q 025304 18 IVIPTIRNL----DFLEMWRPF-FEP--YHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFK------D 84 (255)
Q Consensus 18 IVItTi~~p----~~L~~~~~~-~~~--~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~~------s 84 (255)
|||||++++ +||+++.+. .+. +++|||-|.....+... .. .+.+........++.. -
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~--------~~--~~~~~~~~~v~~~~~~~~~~~g~ 70 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQI--------LE--FAAAKPNFQLKILNNSRVSISGK 70 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHH--------HH--HHHhCCCcceEEeeccCcccchh
Confidence 799999987 588888765 666 99999998822111110 00 0111111112223222 2
Q ss_pred ccccceeeEEEcceEEEeecCCCcccCCCCCccch
Q 025304 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEIN 119 (255)
Q Consensus 85 ~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d 119 (255)
...+|.|.-.|.++||+++|+|+.+.++|+.+.+.
T Consensus 71 ~~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 71 KNALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred HHHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHH
Confidence 33467777777899999999999999887544443
No 19
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=97.89 E-value=3e-06 Score=70.84 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=61.7
Q ss_pred CeEEEEecccCh-----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccc--cc--cCc
Q 025304 15 ELDIVIPTIRNL-----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASC--IS--FKD 84 (255)
Q Consensus 15 ~v~IVItTi~~p-----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~--lP--~~s 84 (255)
.++||||++++. +||+++.+. .+.+++|||.|.....+.+.. ....+++ .....+ .+ .+.
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~--------~~~~~~~--~~~~~~~~~~~~~g~ 71 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRV--------LKKYAAQ--DPRIKVVFREENGGI 71 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHH--------HHHHHhc--CCCEEEEEcccCCCH
Confidence 489999999986 477887765 778999999888221111000 0000000 000111 11 234
Q ss_pred ccccceeeEEEcceEEEeecCCCcccCCCCCccchhh
Q 025304 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (255)
Q Consensus 85 ~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~ 121 (255)
..++|.|+-.|.++||.++|+|+.+.++++.+.+..+
T Consensus 72 ~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 72 SAATNSALELATGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHH
Confidence 5778999999999999999999999988755444443
No 20
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=97.89 E-value=3.3e-06 Score=73.43 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=62.4
Q ss_pred CCCCeEEEEecccCh----hHHHhhhhc-cCC--eEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCc
Q 025304 12 LKDELDIVIPTIRNL----DFLEMWRPF-FEP--YHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKD 84 (255)
Q Consensus 12 ~~~~v~IVItTi~~p----~~L~~~~~~-~~~--~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~~s 84 (255)
....++||||++++. +||+++.+. .+. +++|||.|.....+......+.. . .-++..... ..+.
T Consensus 27 ~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~-----~-~v~~i~~~~---~~g~ 97 (251)
T cd06439 27 YLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYAD-----K-GVKLLRFPE---RRGK 97 (251)
T ss_pred CCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhh-----C-cEEEEEcCC---CCCh
Confidence 344599999999987 577777664 544 89999999833222222211100 0 000100000 1345
Q ss_pred ccccceeeEEEcceEEEeecCCCcccCCCCCccchh
Q 025304 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINA 120 (255)
Q Consensus 85 ~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~ 120 (255)
...+|.|+-.|.++||+++|+|+.+.++|+.+.+..
T Consensus 98 ~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 98 AAALNRALALATGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred HHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHH
Confidence 567788998888999999999999988764444433
No 21
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.89 E-value=2.6e-05 Score=60.47 Aligned_cols=87 Identities=20% Similarity=0.198 Sum_probs=59.8
Q ss_pred CCCeEEEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCC---Ccc---ccc
Q 025304 13 KDELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP---KAS---CIS 81 (255)
Q Consensus 13 ~~~v~IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~---~~~---~lP 81 (255)
+-.++|||||+++. .+|+++.+. ...+++|||.|+ .+-. +.+..+++... ... .--
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~~eiivvddg------s~d~-------t~~~~~~~~~~~~~~~~~~~~~~ 68 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKDFEIIVVDDG------STDG-------TTEIAIEYGAKDVRVIRLINERN 68 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcceEEEEEeCC------CCCC-------hHHHHHHHhhhcceEEEeecccC
Confidence 35799999999987 577777765 677899999988 3321 11111222211 100 112
Q ss_pred cCcccccceeeEEEcceEEEeecCCCcccCCC
Q 025304 82 FKDSACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (255)
Q Consensus 82 ~~s~arRN~GyL~A~a~~I~~~DDDn~p~~~~ 113 (255)
.+-..++|.|+.++.+++|.++|.|.. ++..
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~~~d~d~~-~~~~ 99 (291)
T COG0463 69 GGLGAARNAGLEYARGDYIVFLDADDQ-HPPE 99 (291)
T ss_pred CChHHHHHhhHHhccCCEEEEEccCCC-CCHH
Confidence 457888999999998999999999999 8875
No 22
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=97.87 E-value=4.4e-06 Score=71.62 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=59.7
Q ss_pred eEEEEecccCh----hHHHhhhhc-c--CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC--CCccccc---cC
Q 025304 16 LDIVIPTIRNL----DFLEMWRPF-F--EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG--PKASCIS---FK 83 (255)
Q Consensus 16 v~IVItTi~~p----~~L~~~~~~-~--~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~--~~~~~lP---~~ 83 (255)
++|||||++++ ++|+.+.+. . ..+++|||.|....++...- +++.. ....++. .+
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~-------------~~~~~~~~~v~~i~~~~~~ 68 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIV-------------QEYAAKDPRIRLIDNPKRI 68 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHH-------------HHHHhcCCeEEEEeCCCCC
Confidence 79999999987 466777654 4 57899999877322221111 11110 0011111 12
Q ss_pred cccccceeeEEEcceEEEeecCCCcccCCCCCccchh
Q 025304 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINA 120 (255)
Q Consensus 84 s~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~ 120 (255)
...++|.|+-.|.++||.++|+|+.+.++++.+.++.
T Consensus 69 ~~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~ 105 (249)
T cd02525 69 QSAGLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEA 105 (249)
T ss_pred chHHHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHH
Confidence 4467899999899999999999999988875554443
No 23
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=97.85 E-value=2.6e-06 Score=72.34 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=58.3
Q ss_pred EEEecccCh----hHHHhhhhc-c-CCeEEEEEecCCCCcccccCCCccccccChh-hhhhhhCCCccccccCcccccce
Q 025304 18 IVIPTIRNL----DFLEMWRPF-F-EPYHLIIVQDGDPSKTIKVPDGFDYELYNRN-DINRILGPKASCISFKDSACRCF 90 (255)
Q Consensus 18 IVItTi~~p----~~L~~~~~~-~-~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~-~q~~~l~~~~~~lP~~s~arRN~ 90 (255)
||||+++++ .+|+++.+. . ..+++|||.|.....+...... +... .+.+++. .--..+...++|.
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~-----~~~~~~~i~~~~---~~~n~G~~~a~n~ 72 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRE-----LAKEYPRVRLIV---RPGKRGLGSAYIE 72 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHH-----HHHhCCceEEEe---cCCCCChHHHHHH
Confidence 699999987 567776654 3 7899999999822111111100 0000 0000010 1122446788999
Q ss_pred eeEEEcceEEEeecCCCcccCCCCCccch
Q 025304 91 GYMVSKKKYIFTIDDDCFVAKDPSGKEIN 119 (255)
Q Consensus 91 GyL~A~a~~I~~~DDDn~p~~~~~g~~~d 119 (255)
|+..|.++||+++|+|+.+.++|+...++
T Consensus 73 g~~~a~gd~i~~lD~D~~~~~~~l~~l~~ 101 (224)
T cd06442 73 GFKAARGDVIVVMDADLSHPPEYIPELLE 101 (224)
T ss_pred HHHHcCCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999998876443333
No 24
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=97.81 E-value=1.3e-05 Score=67.98 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=56.4
Q ss_pred CeEEEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc--c--cCc-
Q 025304 15 ELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI--S--FKD- 84 (255)
Q Consensus 15 ~v~IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~l--P--~~s- 84 (255)
.++||||++++. +||+++.+. .+.+++|||.|....++.+.-..+ .++.......++ + .+.
T Consensus 2 ~vsviip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~ 72 (196)
T cd02520 2 GVSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKL---------IAKYPNVDARLLIGGEKVGIN 72 (196)
T ss_pred CeEEEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHH---------HHHCCCCcEEEEecCCcCCCC
Confidence 389999999976 688888775 788999999998322221111000 001100001111 1 111
Q ss_pred cc--ccceeeEEEcceEEEeecCCCcccCCCCC
Q 025304 85 SA--CRCFGYMVSKKKYIFTIDDDCFVAKDPSG 115 (255)
Q Consensus 85 ~a--rRN~GyL~A~a~~I~~~DDDn~p~~~~~g 115 (255)
.+ +.|.|+-.|.+|||+++|+|+.+.++|+.
T Consensus 73 ~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 73 PKVNNLIKGYEEARYDILVISDSDISVPPDYLR 105 (196)
T ss_pred HhHHHHHHHHHhCCCCEEEEECCCceEChhHHH
Confidence 11 23568888889999999999999887633
No 25
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.79 E-value=5.4e-06 Score=66.22 Aligned_cols=85 Identities=14% Similarity=0.230 Sum_probs=56.9
Q ss_pred EEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCC---ccccccCcccccc
Q 025304 18 IVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK---ASCISFKDSACRC 89 (255)
Q Consensus 18 IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~---~~~lP~~s~arRN 89 (255)
||||+++++ ++|+++.+. .+.+++|||.|....++.... ++..... ..--..+...++|
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~-------------~~~~~~~~~~~~~~~~g~~~a~n 67 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELL-------------RELFPEVRLIRNGENLGFGAGNN 67 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHH-------------HHhCCCeEEEecCCCcChHHHhh
Confidence 689999997 466777664 578999999998322211111 1111000 0001245778889
Q ss_pred eeeEEEcceEEEeecCCCcccCCCCC
Q 025304 90 FGYMVSKKKYIFTIDDDCFVAKDPSG 115 (255)
Q Consensus 90 ~GyL~A~a~~I~~~DDDn~p~~~~~g 115 (255)
.|.-.|.+++|.++|||+.+.++++.
T Consensus 68 ~~~~~~~~~~i~~~D~D~~~~~~~l~ 93 (166)
T cd04186 68 QGIREAKGDYVLLLNPDTVVEPGALL 93 (166)
T ss_pred HHHhhCCCCEEEEECCCcEECccHHH
Confidence 99998999999999999999887533
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=97.74 E-value=4.9e-06 Score=71.19 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=49.6
Q ss_pred eEEEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccC---c---
Q 025304 16 LDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFK---D--- 84 (255)
Q Consensus 16 v~IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~~---s--- 84 (255)
++||||+++++ ++|+++... .+++++|||.|....++.+.- .+-++++.....++++.. +
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~---------~~~~~~~~~~~v~vi~~~~~~g~~~ 73 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEIL---------RALAARYPRVRVRVIRRPRNPGPGG 73 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTH---------HHHHHTTGG-GEEEEE----HHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHH---------HHHHHHcCCCceEEeecCCCCCcch
Confidence 89999999997 577777764 688999999987333322111 011112222112233221 1
Q ss_pred -ccccceeeEEEcceEEEeecCCCcccCCCCCccc
Q 025304 85 -SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEI 118 (255)
Q Consensus 85 -~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~ 118 (255)
....|.|+-.+.+++|+++|||+.+.++++...+
T Consensus 74 k~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~ 108 (228)
T PF13641_consen 74 KARALNEALAAARGDYILFLDDDTVLDPDWLERLL 108 (228)
T ss_dssp HHHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHH
Confidence 2334777777789999999999999887644333
No 27
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=97.71 E-value=1.9e-05 Score=69.36 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=61.1
Q ss_pred CCCeEEEEecccCh----hHHHhhhhc---cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccc----
Q 025304 13 KDELDIVIPTIRNL----DFLEMWRPF---FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCIS---- 81 (255)
Q Consensus 13 ~~~v~IVItTi~~p----~~L~~~~~~---~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP---- 81 (255)
+-+++||||++++. ++++.+.+. ...+++|||-|...-.+...- . +-+++.......+++
T Consensus 8 ~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~--------~-~~~~~~~~~~v~~~~~~~n 78 (243)
T PLN02726 8 AMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVV--------K-QLQKVYGEDRILLRPRPGK 78 (243)
T ss_pred CceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHH--------H-HHHHhcCCCcEEEEecCCC
Confidence 34699999999986 355555542 458999999998222221111 0 000011111111221
Q ss_pred cCcccccceeeEEEcceEEEeecCCCcccCCCCCccchhh
Q 025304 82 FKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (255)
Q Consensus 82 ~~s~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~ 121 (255)
.+..++.|.|+..|.++||+++|.|+.+.++++.+.++.+
T Consensus 79 ~G~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~ 118 (243)
T PLN02726 79 LGLGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQ 118 (243)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 3345677888888899999999999998887655444443
No 28
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=97.70 E-value=3.8e-05 Score=72.83 Aligned_cols=102 Identities=12% Similarity=0.141 Sum_probs=62.7
Q ss_pred CCCCeEEEEecccCh----hHHHhhhhc-cC-CeEEEEEecCCCCcccccCCCccccccChhhhhhhhC-CCcccc----
Q 025304 12 LKDELDIVIPTIRNL----DFLEMWRPF-FE-PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG-PKASCI---- 80 (255)
Q Consensus 12 ~~~~v~IVItTi~~p----~~L~~~~~~-~~-~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~-~~~~~l---- 80 (255)
..-.++||||++++. +||+++.+. .+ .+++|||.|...-++......+ .++... ....++
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~---------~~~~~~~~~i~vi~~~~ 108 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAA---------ARAYGRGDRLTVVSGQP 108 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHH---------HHhcCCCCcEEEecCCC
Confidence 344699999999986 688888765 65 6999999998222211111000 000000 011122
Q ss_pred -ccC---cccccceeeEEEc-----ceEEEeecCCCcccCCCCCccchhhh
Q 025304 81 -SFK---DSACRCFGYMVSK-----KKYIFTIDDDCFVAKDPSGKEINALE 122 (255)
Q Consensus 81 -P~~---s~arRN~GyL~A~-----a~~I~~~DDDn~p~~~~~g~~~d~~~ 122 (255)
|.+ ...+.|.|+..|. +|||+++|+|+.++++++.+.+..++
T Consensus 109 ~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~ 159 (384)
T TIGR03469 109 LPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARAR 159 (384)
T ss_pred CCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 111 1235677888887 99999999999999987655555544
No 29
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=97.68 E-value=3.2e-05 Score=66.60 Aligned_cols=97 Identities=10% Similarity=0.123 Sum_probs=57.5
Q ss_pred EEEEecccCh-----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCC--cccc-ccCc-cc
Q 025304 17 DIVIPTIRNL-----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK--ASCI-SFKD-SA 86 (255)
Q Consensus 17 ~IVItTi~~p-----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~--~~~l-P~~s-~a 86 (255)
+||||++++. +||+.+... .+++++|||.|.....+... .. .+-+++..... ...- ..+. .+
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~-------~i-~~~~~~~~~~i~~i~~~~~~G~~~~ 72 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWK-------PV-EAHCAQLGERFRFFHVEPLPGAKAG 72 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHH-------HH-HHHHHHhCCcEEEEEcCCCCCCchH
Confidence 6999999984 467777655 68899999998721111100 00 00000110000 0000 1232 56
Q ss_pred ccceeeEEEc--ceEEEeecCCCcccCCCCCccchhh
Q 025304 87 CRCFGYMVSK--KKYIFTIDDDCFVAKDPSGKEINAL 121 (255)
Q Consensus 87 rRN~GyL~A~--a~~I~~~DDDn~p~~~~~g~~~d~~ 121 (255)
+.|.|+-.|. ++||+++|+|+.+.++++.+.+..+
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~ 109 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIF 109 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHh
Confidence 7899987774 7999999999999988655444433
No 30
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=97.64 E-value=3.3e-05 Score=74.64 Aligned_cols=89 Identities=18% Similarity=0.366 Sum_probs=60.5
Q ss_pred CeEEEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC--CCccccc----cC
Q 025304 15 ELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG--PKASCIS----FK 83 (255)
Q Consensus 15 ~v~IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~--~~~~~lP----~~ 83 (255)
.++||||++++. +||+++.+. .+++++|||.|+...++... .+++.. .....+. .+
T Consensus 76 ~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~-------------~~~~~~~~~~v~vv~~~~n~G 142 (444)
T PRK14583 76 LVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQV-------------LDALLAEDPRLRVIHLAHNQG 142 (444)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHH-------------HHHHHHhCCCEEEEEeCCCCC
Confidence 499999999997 688887765 78999999999832222111 111110 1111111 23
Q ss_pred cccccceeeEEEcceEEEeecCCCcccCCCCCc
Q 025304 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGK 116 (255)
Q Consensus 84 s~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~ 116 (255)
...+.|.|...|.+|||+.+|.|+.+.++.+.+
T Consensus 143 ka~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 143 KAIALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 456678999888999999999999998875333
No 31
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=97.63 E-value=6.3e-06 Score=68.99 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=53.5
Q ss_pred EEEecccCh----hHHHhhhhc-c--CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCcccccce
Q 025304 18 IVIPTIRNL----DFLEMWRPF-F--EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCF 90 (255)
Q Consensus 18 IVItTi~~p----~~L~~~~~~-~--~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~~s~arRN~ 90 (255)
||||++++. +||+++.+. . ..+++|||.|...-++......+...+. .- ...-..+-..+.|.
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~~~~--------~~--~~~~~~gk~~aln~ 70 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGATVL--------ER--HDPERRGKGYALDF 70 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcCCeEE--------Ee--CCCCCCCHHHHHHH
Confidence 799999986 688888764 4 5689999998832222221111000000 00 00001234456777
Q ss_pred eeEEE-----cceEEEeecCCCcccCCCCC
Q 025304 91 GYMVS-----KKKYIFTIDDDCFVAKDPSG 115 (255)
Q Consensus 91 GyL~A-----~a~~I~~~DDDn~p~~~~~g 115 (255)
|+..| .+++|+++|.|+.+.++++.
T Consensus 71 g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~ 100 (183)
T cd06438 71 GFRHLLNLADDPDAVVVFDADNLVDPNALE 100 (183)
T ss_pred HHHHHHhcCCCCCEEEEEcCCCCCChhHHH
Confidence 87655 49999999999999988643
No 32
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=97.62 E-value=4.4e-05 Score=72.10 Aligned_cols=97 Identities=10% Similarity=0.088 Sum_probs=57.6
Q ss_pred CCeEEEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc----cc--
Q 025304 14 DELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI----SF-- 82 (255)
Q Consensus 14 ~~v~IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~l----P~-- 82 (255)
-.++||||++++. +||+++.++ ++.+|+|||.|...-.+...- .+-+++.......++ |.
T Consensus 41 p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv---------~~~~~~~p~~~i~~v~~~~~~G~ 111 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVV---------RRLRADFPDADIDLVIDARRHGP 111 (373)
T ss_pred CCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHH---------HHHHHhCCCCceEEEECCCCCCC
Confidence 3599999999975 789988776 889999998776221111111 011111111111112 11
Q ss_pred --CcccccceeeEEEcceEEEeecCCCcccCCCCCccchh
Q 025304 83 --KDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINA 120 (255)
Q Consensus 83 --~s~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~ 120 (255)
|..++.| ++-.|++|+|+++|+|+.+.++|+.+....
T Consensus 112 ~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~ 150 (373)
T TIGR03472 112 NRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAP 150 (373)
T ss_pred ChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHH
Confidence 1223333 345567999999999999998875444433
No 33
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=97.61 E-value=1.6e-05 Score=65.38 Aligned_cols=89 Identities=19% Similarity=0.298 Sum_probs=58.1
Q ss_pred EEEecccCh----hHHHhhhhcc---CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCC--CccccccCccccc
Q 025304 18 IVIPTIRNL----DFLEMWRPFF---EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP--KASCISFKDSACR 88 (255)
Q Consensus 18 IVItTi~~p----~~L~~~~~~~---~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~--~~~~lP~~s~arR 88 (255)
||||+++++ +||+++.+.. ..+++|||.|.....+...- . ...++.... ...--..+..+++
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~--------~-~~~~~~~~~~~~~~~~n~G~~~a~ 71 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIA--------R-ELAARVPRVRVIRLSRNFGKGAAV 71 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHH--------H-HHHHhCCCeEEEEccCCCCccHHH
Confidence 689999987 5888888753 58999999988322221111 0 011111000 0011124568889
Q ss_pred ceeeEEEcceEEEeecCCCcccCCCCC
Q 025304 89 CFGYMVSKKKYIFTIDDDCFVAKDPSG 115 (255)
Q Consensus 89 N~GyL~A~a~~I~~~DDDn~p~~~~~g 115 (255)
|.|...|.++||+++|+|..+.++|+.
T Consensus 72 n~g~~~a~gd~i~~lD~D~~~~~~~l~ 98 (185)
T cd04179 72 RAGFKAARGDIVVTMDADLQHPPEDIP 98 (185)
T ss_pred HHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999998877633
No 34
>PRK11204 N-glycosyltransferase; Provisional
Probab=97.61 E-value=1.6e-05 Score=75.41 Aligned_cols=95 Identities=17% Similarity=0.366 Sum_probs=63.3
Q ss_pred CeEEEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC--CCccccc----cC
Q 025304 15 ELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG--PKASCIS----FK 83 (255)
Q Consensus 15 ~v~IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~--~~~~~lP----~~ 83 (255)
.++||||++++. +||+++.+. .+.+++|||.|....++...- +++.. .....+. -+
T Consensus 55 ~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l-------------~~~~~~~~~v~~i~~~~n~G 121 (420)
T PRK11204 55 GVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEIL-------------DRLAAQIPRLRVIHLAENQG 121 (420)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHH-------------HHHHHhCCcEEEEEcCCCCC
Confidence 499999999987 578777765 789999999998322221111 11110 0011111 23
Q ss_pred cccccceeeEEEcceEEEeecCCCcccCCCCCccchhhh
Q 025304 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALE 122 (255)
Q Consensus 84 s~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~~ 122 (255)
...+.|.|.-.|.+|||+++|+|+.+.++++.+.++.++
T Consensus 122 ka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~ 160 (420)
T PRK11204 122 KANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFL 160 (420)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 455678888888999999999999999886555555443
No 35
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.51 E-value=5.3e-05 Score=63.72 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=55.8
Q ss_pred EEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCC-ccc--c--ccCcccc
Q 025304 18 IVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK-ASC--I--SFKDSAC 87 (255)
Q Consensus 18 IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~-~~~--l--P~~s~ar 87 (255)
|||||+++. +||+++.+. .+.+++|||.|. .+.. +.+..+++.... ..+ . ..+...+
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~------s~d~-------t~~~~~~~~~~~~i~~~~~~~n~g~~~~ 67 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNA------STDG-------TAEWLTSLGDLDNIVYLRLPENLGGAGG 67 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCCCceEEEEECC------CCcc-------hHHHHHHhcCCCceEEEECccccchhhH
Confidence 689999987 578887765 668899999887 2221 111222211110 011 1 1234445
Q ss_pred cceeeEEE---cceEEEeecCCCcccCCCCCccchhh
Q 025304 88 RCFGYMVS---KKKYIFTIDDDCFVAKDPSGKEINAL 121 (255)
Q Consensus 88 RN~GyL~A---~a~~I~~~DDDn~p~~~~~g~~~d~~ 121 (255)
+|.|+..| .++|++++|+|+.+.++++.+.++.+
T Consensus 68 ~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~ 104 (202)
T cd04185 68 FYEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYA 104 (202)
T ss_pred HHHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHH
Confidence 67777544 58999999999999988644444333
No 36
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=97.46 E-value=6.3e-05 Score=72.73 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=61.5
Q ss_pred CeEEEEecccCh----hHHHhhhhc-cCC--eEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccccc--Ccc
Q 025304 15 ELDIVIPTIRNL----DFLEMWRPF-FEP--YHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISF--KDS 85 (255)
Q Consensus 15 ~v~IVItTi~~p----~~L~~~~~~-~~~--~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~--~s~ 85 (255)
.++||||++++. +||+++.+. .+. +++|||.|....++... +. +.+++...-....++- +-.
T Consensus 50 ~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~i--------l~-~~~~~~~~v~v~~~~~~~Gka 120 (439)
T TIGR03111 50 DITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQV--------FC-RAQNEFPGLSLRYMNSDQGKA 120 (439)
T ss_pred CEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHH--------HH-HHHHhCCCeEEEEeCCCCCHH
Confidence 599999999987 577777664 544 78999988721111110 00 0111111111111222 234
Q ss_pred cccceeeEEEcceEEEeecCCCcccCCCCCccchhhh
Q 025304 86 ACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALE 122 (255)
Q Consensus 86 arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~~ 122 (255)
.+.|.|.-.|.+|||+++|.|+.|.++++.+.+..+.
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 5678899888999999999999998886555555544
No 37
>PRK10063 putative glycosyl transferase; Provisional
Probab=97.42 E-value=0.00015 Score=64.93 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=55.7
Q ss_pred CeEEEEecccCh----hHHHhhhhc----cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCccc
Q 025304 15 ELDIVIPTIRNL----DFLEMWRPF----FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSA 86 (255)
Q Consensus 15 ~v~IVItTi~~p----~~L~~~~~~----~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~~s~a 86 (255)
.++|||||+++. +||+++.+. .+.+++|||-|+..-.+......+. ...+-++.. .-..+.++
T Consensus 2 ~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~-----~~~~i~~i~----~~~~G~~~ 72 (248)
T PRK10063 2 LLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLN-----GIFNLRFVS----EPDNGIYD 72 (248)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhc-----ccCCEEEEE----CCCCCHHH
Confidence 489999999986 577777532 4679999999872222211111110 000001111 11135778
Q ss_pred ccceeeEEEcceEEEeecCCCcccCC
Q 025304 87 CRCFGYMVSKKKYIFTIDDDCFVAKD 112 (255)
Q Consensus 87 rRN~GyL~A~a~~I~~~DDDn~p~~~ 112 (255)
++|.|.-.|.++||+++|.|....++
T Consensus 73 A~N~Gi~~a~g~~v~~ld~DD~~~~~ 98 (248)
T PRK10063 73 AMNKGIAMAQGRFALFLNSGDIFHQD 98 (248)
T ss_pred HHHHHHHHcCCCEEEEEeCCcccCcC
Confidence 99999999999999999977776665
No 38
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=97.40 E-value=6.6e-05 Score=63.96 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=57.2
Q ss_pred EEEecccCh----hHHHhhhhc-c----CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCC--Ccc-ccccCcc
Q 025304 18 IVIPTIRNL----DFLEMWRPF-F----EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP--KAS-CISFKDS 85 (255)
Q Consensus 18 IVItTi~~p----~~L~~~~~~-~----~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~--~~~-~lP~~s~ 85 (255)
||||++++. +||+++.+. . ..+++|||.|.....+...- .+.+++.... ... --..+..
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~---------~~~~~~~~~~i~~i~~~~n~G~~ 71 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVA---------RKLARKNPALIRVLTLPKNRGKG 71 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHH---------HHHHHhCCCcEEEEEcccCCCcH
Confidence 799999976 588888764 3 68999999988221111110 0111111110 000 1124677
Q ss_pred cccceeeEEEcceEEEeecCCCcccCCCCC
Q 025304 86 ACRCFGYMVSKKKYIFTIDDDCFVAKDPSG 115 (255)
Q Consensus 86 arRN~GyL~A~a~~I~~~DDDn~p~~~~~g 115 (255)
++.|.|+..|.++||+++|.|....++++.
T Consensus 72 ~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 72 GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 888999999999999999999998887533
No 39
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=97.36 E-value=2.2e-05 Score=65.11 Aligned_cols=89 Identities=18% Similarity=0.295 Sum_probs=56.4
Q ss_pred EEEecccCh----hHHHhhhhc----cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCC--Cccc----cccC
Q 025304 18 IVIPTIRNL----DFLEMWRPF----FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP--KASC----ISFK 83 (255)
Q Consensus 18 IVItTi~~p----~~L~~~~~~----~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~--~~~~----lP~~ 83 (255)
|||||+++. ++|+.+.+. ...+++|||.|....++.... +.+... .... -..+
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~-------------~~~~~~~~~i~~i~~~~n~G 67 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEIL-------------RELAARDPRVKVIRLSRNFG 67 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHH-------------HHHHhhCCCEEEEEecCCCC
Confidence 689999987 466666542 467999999988322221111 111100 0111 1245
Q ss_pred cccccceeeEEEcceEEEeecCCCcccCCCCCccch
Q 025304 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEIN 119 (255)
Q Consensus 84 s~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d 119 (255)
..++.|.|...|.++||+++|+|+.+.++|+.+.+.
T Consensus 68 ~~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~ 103 (181)
T cd04187 68 QQAALLAGLDHARGDAVITMDADLQDPPELIPEMLA 103 (181)
T ss_pred cHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 667778888888999999999999988776444433
No 40
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=97.28 E-value=0.00012 Score=63.96 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=54.0
Q ss_pred CeEEEEecccCh----hHHHhhhhccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCcccccce
Q 025304 15 ELDIVIPTIRNL----DFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCF 90 (255)
Q Consensus 15 ~v~IVItTi~~p----~~L~~~~~~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~~s~arRN~ 90 (255)
.++|||+|+++. +||+++..+ ..++|||.|...-.+.... ++........-..+..++||.
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~--~~eiivvD~gStD~t~~i~-------------~~~~~~v~~~~~~g~~~~~n~ 65 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWA--VDEIIVVDSGSTDRTVEIA-------------KEYGAKVYQRWWDGFGAQRNF 65 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhcc--cCEEEEEeCCCCccHHHHH-------------HHcCCEEEECCCCChHHHHHH
Confidence 379999999987 466666532 1389999987221111111 011111111111345688999
Q ss_pred eeEEEcceEEEeecCCCcccCCC
Q 025304 91 GYMVSKKKYIFTIDDDCFVAKDP 113 (255)
Q Consensus 91 GyL~A~a~~I~~~DDDn~p~~~~ 113 (255)
|...|.++||+++|.|..+.+++
T Consensus 66 ~~~~a~~d~vl~lDaD~~~~~~~ 88 (229)
T cd02511 66 ALELATNDWVLSLDADERLTPEL 88 (229)
T ss_pred HHHhCCCCEEEEEeCCcCcCHHH
Confidence 99999999999999999988875
No 41
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=97.21 E-value=7.7e-05 Score=69.91 Aligned_cols=92 Identities=26% Similarity=0.347 Sum_probs=57.4
Q ss_pred CCCeEEEEecccCh----hHHHhhhhcc---------CCeEEEEEecCCCCcccccCCCccccccChhhhhhh--hCCCc
Q 025304 13 KDELDIVIPTIRNL----DFLEMWRPFF---------EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRI--LGPKA 77 (255)
Q Consensus 13 ~~~v~IVItTi~~p----~~L~~~~~~~---------~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~--l~~~~ 77 (255)
.-+++||||++++. ++|+++.+.+ ..+++|||-|+..-.+...- .... ++. .....
T Consensus 69 ~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~--------~~~~-~~~~~~~~~i 139 (333)
T PTZ00260 69 DVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVA--------KDFW-RQNINPNIDI 139 (333)
T ss_pred CeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHH--------HHHH-HhcCCCCCcE
Confidence 44599999999986 5666665432 26999999998221111111 0000 000 00001
Q ss_pred ccc----ccCcccccceeeEEEcceEEEeecCCCcccCCC
Q 025304 78 SCI----SFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (255)
Q Consensus 78 ~~l----P~~s~arRN~GyL~A~a~~I~~~DDDn~p~~~~ 113 (255)
.++ ..+..++.|.|+..|.+++|+++|.|....+++
T Consensus 140 ~vi~~~~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~ 179 (333)
T PTZ00260 140 RLLSLLRNKGKGGAVRIGMLASRGKYILMVDADGATDIDD 179 (333)
T ss_pred EEEEcCCCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHH
Confidence 111 235677788999999999999999999987764
No 42
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.18 E-value=0.00012 Score=68.30 Aligned_cols=100 Identities=11% Similarity=0.213 Sum_probs=61.4
Q ss_pred CCCCeEEEEecccCh----hHHHhhhh----ccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcc----c
Q 025304 12 LKDELDIVIPTIRNL----DFLEMWRP----FFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKAS----C 79 (255)
Q Consensus 12 ~~~~v~IVItTi~~p----~~L~~~~~----~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~----~ 79 (255)
...+++||||++++. ++++++.+ ....+++|||-|+..-.+...- ... .++ ...... .
T Consensus 4 ~~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il--------~~~-~~~-~~~~v~~i~~~ 73 (325)
T PRK10714 4 PIKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEML--------VEA-AQA-PDSHIVAILLN 73 (325)
T ss_pred CCCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHH--------HHH-Hhh-cCCcEEEEEeC
Confidence 345699999999986 46666643 2457999999998221111110 000 000 011000 1
Q ss_pred cccCcccccceeeEEEcceEEEeecCCCcccCCCCCccchhh
Q 025304 80 ISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (255)
Q Consensus 80 lP~~s~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~ 121 (255)
-.++..++.|.|+..|.+++|+++|.|....++++-+.++..
T Consensus 74 ~n~G~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~ 115 (325)
T PRK10714 74 RNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKA 115 (325)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 124566778889999999999999999998877544344333
No 43
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.16 E-value=0.00013 Score=67.79 Aligned_cols=96 Identities=13% Similarity=0.178 Sum_probs=55.9
Q ss_pred CCCeEEEEecccCh----hHHHhhhhcc---CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccccc--C
Q 025304 13 KDELDIVIPTIRNL----DFLEMWRPFF---EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISF--K 83 (255)
Q Consensus 13 ~~~v~IVItTi~~p----~~L~~~~~~~---~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~--~ 83 (255)
.-.++||||++++. +||+++.+.. ..+++|||.|...-.+......+...++. +...+. ..+. +
T Consensus 30 ~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~---~~~~~~----~~~~n~G 102 (306)
T PRK13915 30 GRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVS---REEILP----ELPPRPG 102 (306)
T ss_pred CCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhc---chhhhh----ccccCCC
Confidence 44699999999986 5777777542 35799999998322222211111111100 000000 0011 2
Q ss_pred cccccceeeEEEcceEEEeecCCCc-ccCCCCC
Q 025304 84 DSACRCFGYMVSKKKYIFTIDDDCF-VAKDPSG 115 (255)
Q Consensus 84 s~arRN~GyL~A~a~~I~~~DDDn~-p~~~~~g 115 (255)
-.++.|.|+..|.++||+++|.|+. +.++++.
T Consensus 103 kg~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~ 135 (306)
T PRK13915 103 KGEALWRSLAATTGDIVVFVDADLINFDPMFVP 135 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCccccCCHHHHH
Confidence 3345677888888999999999997 5565533
No 44
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=97.10 E-value=0.00013 Score=62.68 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=52.0
Q ss_pred EEEecccCh-hHHHhhhhc--cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc----ccCcccccce
Q 025304 18 IVIPTIRNL-DFLEMWRPF--FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI----SFKDSACRCF 90 (255)
Q Consensus 18 IVItTi~~p-~~L~~~~~~--~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~l----P~~s~arRN~ 90 (255)
+||||+++. +.|++..+. .+.+++|||.|....++.. ..+........+ ..+..+++|.
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q~~~iivvDn~s~~~~~~--------------~~~~~~~~i~~i~~~~n~G~~~a~N~ 66 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQVDKVVVVDNSSGNDIEL--------------RLRLNSEKIELIHLGENLGIAKALNI 66 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhccCCEEEEEeCCCCccHHH--------------HhhccCCcEEEEECCCceehHHhhhH
Confidence 588999987 544444332 2368999998872211111 010000111111 1446788899
Q ss_pred eeEEEcc---eEEEeecCCCcccCCCCCcc
Q 025304 91 GYMVSKK---KYIFTIDDDCFVAKDPSGKE 117 (255)
Q Consensus 91 GyL~A~a---~~I~~~DDDn~p~~~~~g~~ 117 (255)
|+..|.+ +||+++|+|+.+.++|+.+.
T Consensus 67 g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 67 GIKAALENGADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred HHHHHHhCCCCEEEEECCCCCcCHhHHHHH
Confidence 9888855 99999999999998874443
No 45
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=96.86 E-value=0.00044 Score=61.14 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=53.1
Q ss_pred EEEecccCh-----hHHHhhhhc-cC----------CeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccc
Q 025304 18 IVIPTIRNL-----DFLEMWRPF-FE----------PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCIS 81 (255)
Q Consensus 18 IVItTi~~p-----~~L~~~~~~-~~----------~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP 81 (255)
||||.+++. ++|+++... ++ .++||||.|. -+- +++
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dg------s~d------------~~~---------- 52 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDG------AIK------------KNR---------- 52 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCC------ccc------------ccC----------
Confidence 789999994 577777765 66 7899999998 221 000
Q ss_pred cCcc------cccceeeEEEcceEEEeecCCCcccCCCCCccchhh
Q 025304 82 FKDS------ACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (255)
Q Consensus 82 ~~s~------arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~ 121 (255)
-|.+ ...|-|+..|.+|||+++|.|+.+.++++.+.+..+
T Consensus 53 gk~~~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~ 98 (244)
T cd04190 53 GKRDSQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAM 98 (244)
T ss_pred cchHHHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHH
Confidence 0111 133566777899999999999999998655444444
No 46
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=96.80 E-value=0.00055 Score=58.02 Aligned_cols=84 Identities=11% Similarity=0.145 Sum_probs=52.7
Q ss_pred EEEecccCh----hHHHhhhhccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc-------ccCccc
Q 025304 18 IVIPTIRNL----DFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI-------SFKDSA 86 (255)
Q Consensus 18 IVItTi~~p----~~L~~~~~~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~l-------P~~s~a 86 (255)
||||++++. +||+++....+.+++|||.|.....+...-. + +. ......++ ..+-..
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~------~----~~--~~~~v~~i~~~~~~~~~Gk~~ 68 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR------L----AI--TDSRVHLLRRHLPNARTGKGD 68 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh------h----ee--cCCcEEEEeccCCcCCCCHHH
Confidence 799999987 5777777645789999999983222221110 0 00 00111111 123466
Q ss_pred ccceeeEEEc-----------ceEEEeecCCCcccCCC
Q 025304 87 CRCFGYMVSK-----------KKYIFTIDDDCFVAKDP 113 (255)
Q Consensus 87 rRN~GyL~A~-----------a~~I~~~DDDn~p~~~~ 113 (255)
+.|.|+-.|. +++|+++|.|+.+.+++
T Consensus 69 aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~ 106 (191)
T cd06436 69 ALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNA 106 (191)
T ss_pred HHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhH
Confidence 7788886553 37999999999999885
No 47
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=96.80 E-value=0.00033 Score=73.58 Aligned_cols=91 Identities=13% Similarity=0.193 Sum_probs=56.8
Q ss_pred CeEEEEecccCh-h----HHHhhhhc-c--CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc--ccC-
Q 025304 15 ELDIVIPTIRNL-D----FLEMWRPF-F--EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI--SFK- 83 (255)
Q Consensus 15 ~v~IVItTi~~p-~----~L~~~~~~-~--~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~l--P~~- 83 (255)
.++|+|||+|++ + ++.+.... . ++++++||.|+...++.+.. +++ + .+.+ |-+
T Consensus 261 ~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la-------------~~~-~--v~yI~R~~n~ 324 (852)
T PRK11498 261 TVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFA-------------QEV-G--VKYIARPTHE 324 (852)
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHH-------------HHC-C--cEEEEeCCCC
Confidence 499999999998 4 34443332 3 46999999998322221111 111 1 1111 111
Q ss_pred --cccccceeeEEEcceEEEeecCCCcccCCCCCccchhh
Q 025304 84 --DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (255)
Q Consensus 84 --s~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~ 121 (255)
-.+..|.|.-.|.+|||+++|.|+.|.++++.+.+..+
T Consensus 325 ~gKAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f 364 (852)
T PRK11498 325 HAKAGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWF 364 (852)
T ss_pred cchHHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHH
Confidence 23445888888899999999999999988655444443
No 48
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=96.77 E-value=0.00034 Score=63.56 Aligned_cols=84 Identities=24% Similarity=0.472 Sum_probs=55.6
Q ss_pred EEEEecccCh---h-------HHHhhhhc--cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhh---------CC
Q 025304 17 DIVIPTIRNL---D-------FLEMWRPF--FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRIL---------GP 75 (255)
Q Consensus 17 ~IVItTi~~p---~-------~L~~~~~~--~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l---------~~ 75 (255)
+||||...+. . ||+++.++ -+++++|||-|....+. . +..+++. ..
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~-------~------~~l~~~~~~~~~~~~i~~ 67 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSSDEF-------D------EELKKLCEKNGFIRYIRH 67 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCchhH-------H------HHHHHHHhccCceEEEEc
Confidence 5899997754 1 35555542 57889999988722221 0 1111111 11
Q ss_pred CccccccCcccccceeeEEEcceEEEeecCCCcccCCC
Q 025304 76 KASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (255)
Q Consensus 76 ~~~~lP~~s~arRN~GyL~A~a~~I~~~DDDn~p~~~~ 113 (255)
...--+|+-+.+||+|...|.+++|+++|.|+.+.++.
T Consensus 68 ~~~~~~f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~ 105 (281)
T PF10111_consen 68 EDNGEPFSRAKARNIGAKYARGDYLIFLDADCIPSPDF 105 (281)
T ss_pred CCCCCCcCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHH
Confidence 11223578899999999999999999999999998874
No 49
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=96.58 E-value=0.0014 Score=67.58 Aligned_cols=107 Identities=15% Similarity=0.227 Sum_probs=62.6
Q ss_pred CeEEEEecccCh-h----HHHhhhhc-cC--CeEEEEEecCCCCcccccCCCcccccc-ChhhhhhhhCC-Ccccc--cc
Q 025304 15 ELDIVIPTIRNL-D----FLEMWRPF-FE--PYHLIIVQDGDPSKTIKVPDGFDYELY-NRNDINRILGP-KASCI--SF 82 (255)
Q Consensus 15 ~v~IVItTi~~p-~----~L~~~~~~-~~--~~~lVVV~D~~~~~~~ktp~~~~~~~~-~~~~q~~~l~~-~~~~l--P~ 82 (255)
.++|||||++++ + ++++..+. .+ .++++||.|+..-.+.+.|+.+..+.- ..++.+++-.. ....+ |-
T Consensus 132 ~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~~ 211 (713)
T TIGR03030 132 TVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPR 211 (713)
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECCC
Confidence 499999999986 3 45555443 44 799999999854444444433322110 01111111100 11111 11
Q ss_pred C---cccccceeeEEEcceEEEeecCCCcccCCCCCccchhh
Q 025304 83 K---DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (255)
Q Consensus 83 ~---s~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~d~~ 121 (255)
+ .....|.|+-.|.+|||+++|.|+.|.++++.+.+..+
T Consensus 212 n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f 253 (713)
T TIGR03030 212 NVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWF 253 (713)
T ss_pred CCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHH
Confidence 2 12335788888889999999999999988654444444
No 50
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.98 E-value=0.011 Score=45.10 Aligned_cols=88 Identities=19% Similarity=0.269 Sum_probs=52.8
Q ss_pred EEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhh-hCCCccccccCccccccee
Q 025304 18 IVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRI-LGPKASCISFKDSACRCFG 91 (255)
Q Consensus 18 IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~-l~~~~~~lP~~s~arRN~G 91 (255)
||||+.+++ .+|+++.+. ...+++++|.|....+....- ....+... .......-+.+....+|.|
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 72 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEIL--------EEYAKKDPRVIRVINEENQGLAAARNAG 72 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHH--------HHHHhcCCCeEEEEecCCCChHHHHHHH
Confidence 689999987 466676654 468999999998332221111 00000000 0001112224455666777
Q ss_pred eEEEcceEEEeecCCCcccCCC
Q 025304 92 YMVSKKKYIFTIDDDCFVAKDP 113 (255)
Q Consensus 92 yL~A~a~~I~~~DDDn~p~~~~ 113 (255)
...+..++++++|+|+.+.+++
T Consensus 73 ~~~~~~d~v~~~d~D~~~~~~~ 94 (156)
T cd00761 73 LKAARGEYILFLDADDLLLPDW 94 (156)
T ss_pred HHHhcCCEEEEECCCCccCccH
Confidence 7777899999999999987763
No 51
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.94 E-value=0.0069 Score=57.02 Aligned_cols=90 Identities=19% Similarity=0.294 Sum_probs=56.1
Q ss_pred CCeEEEEecccCh-----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc-c--cC-
Q 025304 14 DELDIVIPTIRNL-----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI-S--FK- 83 (255)
Q Consensus 14 ~~v~IVItTi~~p-----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~l-P--~~- 83 (255)
-.++|+||+++++ ++++++.+. +++.+++||.|....++.+.-+ +..+++. .....+ + .+
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~ 123 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILE---------ELGAEYG-PNFRVIYPEKKNG 123 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHH---------HHHhhcC-cceEEEeccccCc
Confidence 6899999999987 366666656 8889999999962222222110 0011110 011111 1 11
Q ss_pred -cccccceeeEEEcceEEEeecCCCcccCCC
Q 025304 84 -DSACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (255)
Q Consensus 84 -s~arRN~GyL~A~a~~I~~~DDDn~p~~~~ 113 (255)
-...=|-|+-.|.+|+|+.+|-|..|++++
T Consensus 124 gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~ 154 (439)
T COG1215 124 GKAGALNNGLKRAKGDVVVILDADTVPEPDA 154 (439)
T ss_pred cchHHHHHHHhhcCCCEEEEEcCCCCCChhH
Confidence 234445566777899999999999999985
No 52
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=95.29 E-value=0.024 Score=53.88 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=27.5
Q ss_pred eEEEEecccCh----hHHHhhhhc---cCCeEEEEEecCCCC
Q 025304 16 LDIVIPTIRNL----DFLEMWRPF---FEPYHLIIVQDGDPS 50 (255)
Q Consensus 16 v~IVItTi~~p----~~L~~~~~~---~~~~~lVVV~D~~~~ 50 (255)
+-|||.++++| ++|+++.+. .+.++|+|..|+...
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 46899999999 477777752 458899999999443
No 53
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=95.22 E-value=0.0033 Score=56.21 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=31.4
Q ss_pred CcccccceeeEEE---cceEEEeecCCCcccCCCCCccchhhh
Q 025304 83 KDSACRCFGYMVS---KKKYIFTIDDDCFVAKDPSGKEINALE 122 (255)
Q Consensus 83 ~s~arRN~GyL~A---~a~~I~~~DDDn~p~~~~~g~~~d~~~ 122 (255)
+..++.|.|.-+| .++||+++|||+.|.++++.+.++.++
T Consensus 57 G~a~a~N~Gi~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 99 (281)
T TIGR01556 57 GIAGAQNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLS 99 (281)
T ss_pred chHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 5678899998777 589999999999999886554444444
No 54
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=95.07 E-value=0.008 Score=55.10 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=54.2
Q ss_pred CCCeEEEEecccCh----hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccc----cC
Q 025304 13 KDELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCIS----FK 83 (255)
Q Consensus 13 ~~~v~IVItTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP----~~ 83 (255)
+-+++|||+|++++ +||+++++. .+.-++|+|.+. .+.. +.+..+.....-..+|. .+
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~------s~d~-------~~~~~~~~~~~~v~~i~~~~NlG 68 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNG------STDG-------SLEALKARFFPNVRLIENGENLG 68 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCC------CCCC-------CHHHHHhhcCCcEEEEEcCCCcc
Confidence 34789999999997 699988877 455555545544 2221 11111111011111110 12
Q ss_pred cccccceeeEEEcce---EEEeecCCCcccCCCCCccchhhhh
Q 025304 84 DSACRCFGYMVSKKK---YIFTIDDDCFVAKDPSGKEINALEQ 123 (255)
Q Consensus 84 s~arRN~GyL~A~a~---~I~~~DDDn~p~~~~~g~~~d~~~~ 123 (255)
..+.=|.|..+|.++ |++.+++|..+.++++.+.++..++
T Consensus 69 ~agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~ 111 (305)
T COG1216 69 FAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEE 111 (305)
T ss_pred chhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHh
Confidence 333334444555444 9999999988888865555555443
No 55
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=94.84 E-value=0.012 Score=55.05 Aligned_cols=89 Identities=19% Similarity=0.256 Sum_probs=54.5
Q ss_pred CeEEEEecccCh--------hHHHhhhhc-cC----CeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccc
Q 025304 15 ELDIVIPTIRNL--------DFLEMWRPF-FE----PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCIS 81 (255)
Q Consensus 15 ~v~IVItTi~~p--------~~L~~~~~~-~~----~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP 81 (255)
.++||||+++++ +|+.-+.+- .. +|++|||.|+.-..+.+...+++ .-...|+-+. ....+-.+
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s--~K~~~d~irV-~~l~~nrg 144 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFS--RKLGDDNIRV-IKLKKNRG 144 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHH--HHcCcceEEE-eehhccCC
Confidence 689999999986 344444432 34 79999999993333333332221 0011111111 11223456
Q ss_pred cCcccccceeeEEEcceEEEeecCCCc
Q 025304 82 FKDSACRCFGYMVSKKKYIFTIDDDCF 108 (255)
Q Consensus 82 ~~s~arRN~GyL~A~a~~I~~~DDDn~ 108 (255)
.++..| -|.|.|++++|.+.|-|.-
T Consensus 145 KGgAvR--~g~l~~rG~~ilfadAdGa 169 (323)
T KOG2977|consen 145 KGGAVR--KGMLSSRGQKILFADADGA 169 (323)
T ss_pred CCccee--hhhHhccCceEEEEcCCCC
Confidence 667777 6889999999999998865
No 56
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=92.59 E-value=0.029 Score=50.82 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=24.7
Q ss_pred eEEEEecccCh-----hHHHhhhh----c--cCCeEEEEEecC
Q 025304 16 LDIVIPTIRNL-----DFLEMWRP----F--FEPYHLIIVQDG 47 (255)
Q Consensus 16 v~IVItTi~~p-----~~L~~~~~----~--~~~~~lVVV~D~ 47 (255)
++|+||+++++ ++|++..+ . .+.++++||.|+
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~ 43 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDT 43 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCC
Confidence 58999999986 35666543 1 368999999998
No 57
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=90.98 E-value=0.091 Score=47.39 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=27.4
Q ss_pred eEEEEecccCh---hHHHhhhh---ccCCeEEEEEecC
Q 025304 16 LDIVIPTIRNL---DFLEMWRP---FFEPYHLIIVQDG 47 (255)
Q Consensus 16 v~IVItTi~~p---~~L~~~~~---~~~~~~lVVV~D~ 47 (255)
+-||-||+.++ ..|.++++ ..++++-|||-|+
T Consensus 3 i~vVTPTy~R~~Q~~~LtRLa~TL~lVp~l~WIVVEd~ 40 (223)
T cd00218 3 IYVVTPTYARPVQKAELTRLAHTLRLVPPLHWIVVEDS 40 (223)
T ss_pred EEEECCCCccchhhHHHHHHHHHHhcCCceEEEEEeCC
Confidence 45788899998 58999988 3789999999998
No 58
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=90.62 E-value=0.32 Score=48.69 Aligned_cols=88 Identities=15% Similarity=0.285 Sum_probs=52.4
Q ss_pred CCCeEEEEecccCh----hHHHhh-hhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCC--cc--cccc
Q 025304 13 KDELDIVIPTIRNL----DFLEMW-RPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK--AS--CISF 82 (255)
Q Consensus 13 ~~~v~IVItTi~~p----~~L~~~-~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~--~~--~lP~ 82 (255)
.-.++|+||.+++. ++|+.. .+. +++++++||.|. .++. +.+..+++-... .+ .++-
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~------ndd~-------T~~~v~~l~~~~p~v~~vv~~~ 131 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYP------NDPA-------TLREVDRLAARYPRVHLVIVPH 131 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECC------CChh-------HHHHHHHHHHHCCCeEEEEeCC
Confidence 44599999999996 677764 444 799999999987 3331 111112111100 11 1122
Q ss_pred C----cccccceeeEEE------c---ceEEEeecCCCcccCCC
Q 025304 83 K----DSACRCFGYMVS------K---KKYIFTIDDDCFVAKDP 113 (255)
Q Consensus 83 ~----s~arRN~GyL~A------~---a~~I~~~DDDn~p~~~~ 113 (255)
+ -..+=|.|+-.+ . .|+|+.+|-|+.++++.
T Consensus 132 ~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~ 175 (504)
T PRK14716 132 DGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLE 175 (504)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccH
Confidence 2 233444455221 2 39999999999999983
No 59
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=87.67 E-value=0.66 Score=43.95 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=29.5
Q ss_pred CCCeEEEEecccCh---hHHHhhhh---ccCCeEEEEEecCC
Q 025304 13 KDELDIVIPTIRNL---DFLEMWRP---FFEPYHLIIVQDGD 48 (255)
Q Consensus 13 ~~~v~IVItTi~~p---~~L~~~~~---~~~~~~lVVV~D~~ 48 (255)
..-|-||-|||.++ ..|.+++. +-++++.|||-|..
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~~V~nLhWIVVEd~~ 127 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTLRLVPNLHWIVVEDGE 127 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHHhhcCCeeEEEEecCC
Confidence 45577888999998 57888887 36899999999983
No 60
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=82.91 E-value=2.2 Score=38.17 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=52.1
Q ss_pred CCeEEEEecccCh---h-HHHhhhh----ccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC-CCccccccC-
Q 025304 14 DELDIVIPTIRNL---D-FLEMWRP----FFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG-PKASCISFK- 83 (255)
Q Consensus 14 ~~v~IVItTi~~p---~-~L~~~~~----~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~-~~~~~lP~~- 83 (255)
.+.+|++||+++- . ++.-++. .-..|++|+|.|..+--++++. ++-++..+ ...-++|-.
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a----------~~L~k~yg~d~i~l~pR~~ 72 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVA----------KALQKIYGEDNILLKPRTK 72 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHH----------HHHHHHhCCCcEEEEeccC
Confidence 4679999999975 2 2222222 2568999999997433333332 12222222 223334432
Q ss_pred ---cccccceeeEEEcceEEEeecCCCcccCC
Q 025304 84 ---DSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (255)
Q Consensus 84 ---s~arRN~GyL~A~a~~I~~~DDDn~p~~~ 112 (255)
-.++=--|+-.|.+++|+-+|-|-.-++.
T Consensus 73 klGLgtAy~hgl~~a~g~fiviMDaDlsHhPk 104 (238)
T KOG2978|consen 73 KLGLGTAYIHGLKHATGDFIVIMDADLSHHPK 104 (238)
T ss_pred cccchHHHHhhhhhccCCeEEEEeCccCCCch
Confidence 22233345566679999999999887665
No 61
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=80.27 E-value=1.8 Score=44.96 Aligned_cols=100 Identities=10% Similarity=0.089 Sum_probs=51.8
Q ss_pred CCCCCeEEEEecccCh-h----HHH----hhhhc--cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCC-C--
Q 025304 11 LLKDELDIVIPTIRNL-D----FLE----MWRPF--FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP-K-- 76 (255)
Q Consensus 11 ~~~~~v~IVItTi~~p-~----~L~----~~~~~--~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~-~-- 76 (255)
.....++||||++++. + .|+ ++... .++++++|+.|+.+.+.....+. -+. +-++++.+. .
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~----~~~-~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEA----AWL-ELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHH----HHH-HHHHhcCCCCcEE
Confidence 3345699999999976 2 333 33322 35799999999933332221100 000 000111000 0
Q ss_pred -ccccccCcccccceeeEEE----cceEEEeecCCCcccCCCCC
Q 025304 77 -ASCISFKDSACRCFGYMVS----KKKYIFTIDDDCFVAKDPSG 115 (255)
Q Consensus 77 -~~~lP~~s~arRN~GyL~A----~a~~I~~~DDDn~p~~~~~g 115 (255)
.+...-....+-|++.... ..|||+..|-|..+.++-+.
T Consensus 196 yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~ 239 (691)
T PRK05454 196 YRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLV 239 (691)
T ss_pred EEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHH
Confidence 0000011233445554332 35999999999999987433
No 62
>PLN02458 transferase, transferring glycosyl groups
Probab=78.86 E-value=1.1 Score=42.85 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=25.8
Q ss_pred eEEEEeccc-Ch---hHHHhhhh---ccC-CeEEEEEecC
Q 025304 16 LDIVIPTIR-NL---DFLEMWRP---FFE-PYHLIIVQDG 47 (255)
Q Consensus 16 v~IVItTi~-~p---~~L~~~~~---~~~-~~~lVVV~D~ 47 (255)
|-||.|||. ++ ..|.++++ +.+ +++-|||-|.
T Consensus 114 IivVTPTY~rR~~Q~a~LTRLahTL~lVp~pL~WIVVEd~ 153 (346)
T PLN02458 114 VIIVTPISTKDRYQGVLLRRLANTLRLVPPPLLWIVVEGQ 153 (346)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHhcCCCCceEEEEeCC
Confidence 667778896 67 58999988 255 8999999987
No 63
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=71.50 E-value=4.4 Score=42.43 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=51.2
Q ss_pred CCeEEEEecccCh----hHHHhhh-hc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc----ccC
Q 025304 14 DELDIVIPTIRNL----DFLEMWR-PF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI----SFK 83 (255)
Q Consensus 14 ~~v~IVItTi~~p----~~L~~~~-~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~l----P~~ 83 (255)
.-++|+||.+|+. +.++.+. .. +++++++|+.|.++.++...-+ +-++++..-..-.. |-.
T Consensus 63 ~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~---------~l~~~~p~~~~v~~~~~g~~g 133 (727)
T PRK11234 63 KPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVD---------AVCARFPNVHKVVCARPGPTS 133 (727)
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHH---------HHHHHCCCcEEEEeCCCCCCC
Confidence 4599999999997 5666553 34 8899999998763333222210 00111111000001 122
Q ss_pred cccccceeeEEE-------c--ceEEEeecCCCcccCC
Q 025304 84 DSACRCFGYMVS-------K--KKYIFTIDDDCFVAKD 112 (255)
Q Consensus 84 s~arRN~GyL~A-------~--a~~I~~~DDDn~p~~~ 112 (255)
-..+=|-|+..+ + .++++.+|-|+.|+++
T Consensus 134 Ka~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd 171 (727)
T PRK11234 134 KADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPM 171 (727)
T ss_pred HHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChh
Confidence 334445555443 2 3567779999999987
No 64
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=60.16 E-value=4.2 Score=37.36 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.3
Q ss_pred cccccCcCCCCCcCcccCCC
Q 025304 139 TLYDPYREGADFVRGYPFSL 158 (255)
Q Consensus 139 ~ly~~f~~~~~wpRG~Pl~~ 158 (255)
.+++|||...+||||||-++
T Consensus 122 ~~WDPfGYnNMFPr~~ldDL 141 (249)
T PF04583_consen 122 MFWDPFGYNNMFPREYLDDL 141 (249)
T ss_pred HhcCcccccccCCCcchHHH
Confidence 34899999999999999655
No 65
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=59.99 E-value=13 Score=39.02 Aligned_cols=86 Identities=12% Similarity=0.178 Sum_probs=50.6
Q ss_pred CCeEEEEecccCh----hHHHhh-hhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCC--Cccc--cc--
Q 025304 14 DELDIVIPTIRNL----DFLEMW-RPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP--KASC--IS-- 81 (255)
Q Consensus 14 ~~v~IVItTi~~p----~~L~~~-~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~--~~~~--lP-- 81 (255)
.-++|+||.+++. ++++.+ +.+ +++++++|+.+.++.++...- +++-.. ..+. +|
T Consensus 71 ~~vsIlVPa~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~~~-------------~~~~~~~p~~~~v~~~~~ 137 (703)
T PRK15489 71 QPLAIMVPAWKEYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETITEV-------------ERMRRRYKRLVRVEVPHD 137 (703)
T ss_pred CceEEEEeCCCcHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHHHH-------------HHHhccCCcEEEEEcCCC
Confidence 4599999999997 577774 345 889999997655333332222 221111 0011 12
Q ss_pred --cCcccccceeeEEE-------cc--eEEEeecCCCcccCC
Q 025304 82 --FKDSACRCFGYMVS-------KK--KYIFTIDDDCFVAKD 112 (255)
Q Consensus 82 --~~s~arRN~GyL~A-------~a--~~I~~~DDDn~p~~~ 112 (255)
..-..|=|.|+..+ +. +.|+..|-|+.|+++
T Consensus 138 gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~ 179 (703)
T PRK15489 138 GPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPL 179 (703)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChh
Confidence 22344445555443 22 238889999999998
No 66
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=56.84 E-value=7.8 Score=37.66 Aligned_cols=95 Identities=17% Similarity=0.265 Sum_probs=55.3
Q ss_pred CCeEEEEecccCh-hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCcccc------ccChhhhh-------------hh
Q 025304 14 DELDIVIPTIRNL-DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYE------LYNRNDIN-------------RI 72 (255)
Q Consensus 14 ~~v~IVItTi~~p-~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~------~~~~~~q~-------------~~ 72 (255)
++..||||.-++. ..|++.-.. -.++-+|||.... ..-+..|..| ++...+|+ ++
T Consensus 51 ~~mAIVVP~KdE~l~lleGVL~gIPh~c~iIvVSNS~----r~~~d~f~~E~dlv~~f~~~t~r~~i~vHQkDp~la~Af 126 (393)
T PRK14503 51 GRMAIVVPVKNERLKLLEGVLKGIPHECPIIVVSNSK----REPPDRFKLEVDLVRHFYRLTQRPIIIVHQKDPGLAEAL 126 (393)
T ss_pred hCcEEEEEcCCCchhHHhhHhhcCCCCCeEEEEeCCC----CCCchHHHHHHHHHHHHHhhhcCceEEEEcCCHHHHHHH
Confidence 4678999999975 777776654 5677888888771 1223444422 11111111 11
Q ss_pred h-CCCccccccCccccc------ceeeEEE---cceEEEeecCCCcccCC
Q 025304 73 L-GPKASCISFKDSACR------CFGYMVS---KKKYIFTIDDDCFVAKD 112 (255)
Q Consensus 73 l-~~~~~~lP~~s~arR------N~GyL~A---~a~~I~~~DDDn~p~~~ 112 (255)
- .-+..++--++..|. =+|.|.| +++||=|+|-||..++.
T Consensus 127 ~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPGa 176 (393)
T PRK14503 127 KEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPGA 176 (393)
T ss_pred HHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCch
Confidence 1 112334433333332 2566666 49999999999997764
No 67
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=54.52 E-value=8.9 Score=37.10 Aligned_cols=95 Identities=19% Similarity=0.254 Sum_probs=55.2
Q ss_pred CCeEEEEecccCh-hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccc-----c-Chhhhh-------------hh
Q 025304 14 DELDIVIPTIRNL-DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYEL-----Y-NRNDIN-------------RI 72 (255)
Q Consensus 14 ~~v~IVItTi~~p-~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~-----~-~~~~q~-------------~~ 72 (255)
++..||||.-++. ..|++.-.. -.++-+|||.... ..-+..|..|. | ...+++ ++
T Consensus 50 ~~maIVVP~KdE~l~lleGVL~gIPh~c~iIvVSNS~----r~~~d~f~~E~d~~~~f~~~t~r~~i~vHQkDp~la~Af 125 (381)
T TIGR02460 50 GKTAIVVPVKNEKLHLLEGVLSGIPHECPIIIVSNSK----REPPDRFKMEVDLIRHFSNLTHRKIIIIHQKDPALAEAF 125 (381)
T ss_pred hCcEEEEEcCCCchhHHhhHhhcCCCCCeEEEEeCCC----CCChhHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHHHH
Confidence 4578999999975 777776654 5678888888872 12234444221 1 111111 11
Q ss_pred h-CCCccccccCccccc------ceeeEEE---cceEEEeecCCCcccCC
Q 025304 73 L-GPKASCISFKDSACR------CFGYMVS---KKKYIFTIDDDCFVAKD 112 (255)
Q Consensus 73 l-~~~~~~lP~~s~arR------N~GyL~A---~a~~I~~~DDDn~p~~~ 112 (255)
- .-+..++--++..|. =+|.|.| +++||=|+|-||..++.
T Consensus 126 ~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPGa 175 (381)
T TIGR02460 126 KEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPGA 175 (381)
T ss_pred HHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCch
Confidence 1 112334433333332 2566666 49999999999997764
No 68
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=54.37 E-value=7.4 Score=32.67 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCCeEEEEecccChh----HHHhhhhcc----CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC
Q 025304 3 TPSTKPTPLLKDELDIVIPTIRNLD----FLEMWRPFF----EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG 74 (255)
Q Consensus 3 ~~~~~~~~~~~~~v~IVItTi~~p~----~L~~~~~~~----~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~ 74 (255)
|+..+..|.....+.||||=..+.+ +|..+.+++ -.+++.||-=. .
T Consensus 36 G~~~p~~C~~~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~~y~I~vieQ~--------~------------------ 89 (136)
T PF13733_consen 36 GHWKPPDCKPRHKVAIIIPYRDREEHLRIFLPHLHPFLQRQQLDYRIFVIEQV--------D------------------ 89 (136)
T ss_dssp TEE--SSSB-S-EEEEEEEESS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEE---------S------------------
T ss_pred ceecCCccccccceEEEEEeCCHHHHHHHHHHHHHHHHhhCcceEEEEEEeec--------c------------------
Confidence 4445566777888999999988863 444444432 34566666421 0
Q ss_pred CCccccccCcccccceeeEEEc----ceEEEeecCCCcccCC
Q 025304 75 PKASCISFKDSACRCFGYMVSK----KKYIFTIDDDCFVAKD 112 (255)
Q Consensus 75 ~~~~~lP~~s~arRN~GyL~A~----a~~I~~~DDDn~p~~~ 112 (255)
-.||+-..-.|+||+.|. .++++|=|=|-+|.++
T Consensus 90 ----~~~FNRg~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 90 ----NGPFNRGKLMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp ----SS---HHHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred ----CCCCchhhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 234777778899999993 7899999999999987
No 69
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=44.58 E-value=11 Score=36.51 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=46.1
Q ss_pred CCeEEEEecccCh-hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCcccc------ccChhhhh-------------hh
Q 025304 14 DELDIVIPTIRNL-DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYE------LYNRNDIN-------------RI 72 (255)
Q Consensus 14 ~~v~IVItTi~~p-~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~------~~~~~~q~-------------~~ 72 (255)
++..||||.-++. ..|++.-.. -.++-+|||..... .-+..|..+ ++....++ ++
T Consensus 50 ~~maIVVP~KnE~l~lleGVL~gIPh~C~IIvVSNS~r----~~~d~f~~E~d~l~~f~~~t~r~~~~vHQkDp~lA~Af 125 (381)
T PF09488_consen 50 SKMAIVVPCKNEKLKLLEGVLSGIPHDCLIIVVSNSSR----EPVDRFKMEVDLLKHFCRLTRRQIIIVHQKDPGLAEAF 125 (381)
T ss_dssp TTEEEEEEESS--HHHHHHHHHCS-TTSEEEEEE---C----SSSCHHHHHHHHHHHHHHHCT--EEEEETT-HHHHHHH
T ss_pred hCcEEEEECCCCchhhhhhhhhcCCCCCeEEEEECCCC----CCccHHHHHHHHHHHHHHhhcCceEEEecCCHHHHHHH
Confidence 4688999999975 777776654 56788888887622 112333321 11111111 11
Q ss_pred h-CCCccccccCccccc------ceeeEEE---cceEEEeecCCCcccCC
Q 025304 73 L-GPKASCISFKDSACR------CFGYMVS---KKKYIFTIDDDCFVAKD 112 (255)
Q Consensus 73 l-~~~~~~lP~~s~arR------N~GyL~A---~a~~I~~~DDDn~p~~~ 112 (255)
- .-+..+|--++--|. =+|.|.| +++||=|+|-||.-++.
T Consensus 126 ~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiPGa 175 (381)
T PF09488_consen 126 KEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIPGA 175 (381)
T ss_dssp HHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-HHH
T ss_pred HHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCcch
Confidence 1 112334443433222 2677777 49999999999997653
No 70
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=37.68 E-value=19 Score=37.79 Aligned_cols=95 Identities=15% Similarity=0.208 Sum_probs=54.4
Q ss_pred CCeEEEEecccCh-hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCcccc------ccChhhhh-------------hh
Q 025304 14 DELDIVIPTIRNL-DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYE------LYNRNDIN-------------RI 72 (255)
Q Consensus 14 ~~v~IVItTi~~p-~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~------~~~~~~q~-------------~~ 72 (255)
.+..||||.-++. ..|++.-.. -.++-+|||..... ..++-|..| ++...+|+ ++
T Consensus 55 ~~~aivvp~k~e~~~~~~gvl~~ip~~c~ii~vsns~r----~~~d~~~~e~~~~~~~~~~~~~~~~~vhq~dp~~a~a~ 130 (694)
T PRK14502 55 KKMAIVLPIKDEDLKVFEGVLSGIPHDCLMIVISNSSK----QEVDNFKNEKDIVNRFCRITHRQAIVVHQKNPELANAI 130 (694)
T ss_pred hCcEEEEEcCCCchhHHhhHhhcCCCCCeEEEEeCCCC----CchHHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHHHH
Confidence 4578999999975 777776654 56788888887721 123334321 11111111 11
Q ss_pred h-CCCccccccCccccc------ceeeEEE---cceEEEeecCCCcccCC
Q 025304 73 L-GPKASCISFKDSACR------CFGYMVS---KKKYIFTIDDDCFVAKD 112 (255)
Q Consensus 73 l-~~~~~~lP~~s~arR------N~GyL~A---~a~~I~~~DDDn~p~~~ 112 (255)
. .-+..+|--++..|. =+|.|.| +++||=|+|-||..++.
T Consensus 131 ~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg~ 180 (694)
T PRK14502 131 ADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPGA 180 (694)
T ss_pred HHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCch
Confidence 1 112333433333332 2566666 49999999999997764
No 71
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=36.51 E-value=16 Score=34.29 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=19.5
Q ss_pred cceEEEeecCCCcccCCCCCccchhh
Q 025304 96 KKKYIFTIDDDCFVAKDPSGKEINAL 121 (255)
Q Consensus 96 ~a~~I~~~DDDn~p~~~~~g~~~d~~ 121 (255)
.++|..-+.||-...++|+....++.
T Consensus 169 ~~~YyL~LEDDVia~~~f~~~i~~~v 194 (297)
T PF04666_consen 169 LGDYYLQLEDDVIAAPGFLSRIKRFV 194 (297)
T ss_pred cCCeEEEecCCeEechhHHHHHHHHH
Confidence 38999999999999988744433333
No 72
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.15 E-value=29 Score=34.53 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=28.9
Q ss_pred cccccceeeEEEcceEEEeecCCCcccCCCCCccc
Q 025304 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEI 118 (255)
Q Consensus 84 s~arRN~GyL~A~a~~I~~~DDDn~p~~~~~g~~~ 118 (255)
--.+|++|=.-|-+++|+|+|..|.+..+|+-..+
T Consensus 228 LI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLl 262 (603)
T KOG3737|consen 228 LIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLL 262 (603)
T ss_pred hhhhhccchhhccccEEEEEecceeeecccccccc
Confidence 34578889888899999999999999999855443
No 73
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=27.84 E-value=62 Score=28.52 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=40.0
Q ss_pred eEEEEecccCh---hHHHhhhhc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCccccccee
Q 025304 16 LDIVIPTIRNL---DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFG 91 (255)
Q Consensus 16 v~IVItTi~~p---~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~~q~~~l~~~~~~lP~~s~arRN~G 91 (255)
|+||+.+-++- +|++.+.+. .+..+.|-|-..... ..-.+.=|.|
T Consensus 1 isiI~c~n~~~~~~~~~~~i~~~~~~~~~~i~i~~~~~~-------------------------------~s~~~~yN~a 49 (217)
T PF13712_consen 1 ISIIICVNDEELYEECLRSIKRLIGPPGELIEIDNVRNA-------------------------------KSMAAAYNEA 49 (217)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHTT--TEEEEEEE-SSS--------------------------------S-TTTHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeccCCC-------------------------------cCHHHHHHHH
Confidence 45665554443 788888876 677777766443100 1122222444
Q ss_pred eEEEcceEEEeecCCCcccCC-CCCccchhh
Q 025304 92 YMVSKKKYIFTIDDDCFVAKD-PSGKEINAL 121 (255)
Q Consensus 92 yL~A~a~~I~~~DDDn~p~~~-~~g~~~d~~ 121 (255)
.-.|+++|++|+.||....+. |+...++.+
T Consensus 50 ~~~a~~~ylvflHqDv~i~~~~~l~~il~~~ 80 (217)
T PF13712_consen 50 MEKAKAKYLVFLHQDVFIINENWLEDILEIF 80 (217)
T ss_dssp GGG--SSEEEEEETTEE-SSHHHHHHHHHHH
T ss_pred HHhCCCCEEEEEeCCeEEcchhHHHHHHHHH
Confidence 445679999999999998764 433344444
No 74
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=25.25 E-value=77 Score=29.54 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=18.7
Q ss_pred hHHHhhhh-c-cCCeEEEEEecCCCC
Q 025304 27 DFLEMWRP-F-FEPYHLIIVQDGDPS 50 (255)
Q Consensus 27 ~~L~~~~~-~-~~~~~lVVV~D~~~~ 50 (255)
+|.+.+.+ + -+...++||||+...
T Consensus 217 ~cFe~I~~Rfg~p~~~f~~IGDG~eE 242 (274)
T TIGR01658 217 QCFKWIKERFGHPKVRFCAIGDGWEE 242 (274)
T ss_pred HHHHHHHHHhCCCCceEEEeCCChhH
Confidence 48888877 3 558999999999443
No 75
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=22.70 E-value=18 Score=26.58 Aligned_cols=22 Identities=45% Similarity=0.833 Sum_probs=18.6
Q ss_pred CCCcCcccCCC-CCCcchheeec
Q 025304 148 ADFVRGYPFSL-REGVHTAVSHG 169 (255)
Q Consensus 148 ~~wpRG~Pl~~-r~g~~~~i~qG 169 (255)
..=-|.|||+. |+-++.||.+|
T Consensus 41 ~~~~rsF~YsLSR~DvE~Ai~~G 63 (63)
T PF11341_consen 41 QDIQRSFPYSLSREDVEAAIFSG 63 (63)
T ss_pred cccEEeccCcCCHHHHHHHHhcC
Confidence 66789999999 88888888776
No 76
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=22.51 E-value=46 Score=29.71 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=17.2
Q ss_pred CcccccceeeEEE-------cceEEEeecCCCc
Q 025304 83 KDSACRCFGYMVS-------KKKYIFTIDDDCF 108 (255)
Q Consensus 83 ~s~arRN~GyL~A-------~a~~I~~~DDDn~ 108 (255)
.....||.|+-+- ..=+|||.||||.
T Consensus 57 rg~~qRn~AL~~ir~~~~~~~~GVVyFaDDdNt 89 (207)
T PF03360_consen 57 RGVHQRNAALRWIRNNANHRLDGVVYFADDDNT 89 (207)
T ss_dssp TSHHHHHHHHHHHHSTTTSSS-EEEEE--TTSE
T ss_pred ccHHHHHHHHHHHHhcccCCCCcEEEECCCCCe
Confidence 3567888888433 2779999999998
No 77
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=21.56 E-value=1.3e+02 Score=27.11 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=28.4
Q ss_pred ccCcccccceeeEEEc----ceEEEeecCCCcccCCC
Q 025304 81 SFKDSACRCFGYMVSK----KKYIFTIDDDCFVAKDP 113 (255)
Q Consensus 81 P~~s~arRN~GyL~A~----a~~I~~~DDDn~p~~~~ 113 (255)
||+-...-|+||+.|. .+++++=|=|-.|.++.
T Consensus 47 ~FNR~~llNvG~~~a~k~~~~dc~i~hDVDllP~~~~ 83 (219)
T cd00899 47 RFNRAKLLNVGFLEALKDGDWDCFIFHDVDLLPENDR 83 (219)
T ss_pred cchhhhhhhHHHHHHhhcCCccEEEEecccccccCcc
Confidence 4788888899999994 57899999999999884
Done!