BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025306
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FA0|A Chain A, Crystal Structure Of Human Adpla To 2.65 A Resolution
Length = 137
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 14 KPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGT 53
KPGD I +R + Y H IY+GD V+H + G G
Sbjct: 12 KPGDLIEIFRPF-YRHWAIYVGDGYVVHLAPPSEVAGAGA 50
>pdb|2KYT|A Chain A, Solution Struture Of The H-Rev107 N-Terminal Domain
Length = 125
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 14 KPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGT 53
KPGD I +R + Y H IY+GD V+H + G G
Sbjct: 9 KPGDLIEIFRPF-YRHWAIYVGDGYVVHLAPPSEVAGAGA 47
>pdb|4DOT|A Chain A, Crystal Structure Of Human Hrasls3
Length = 140
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 14 KPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGT 53
KPGD I +R + Y H IY+GD V+H + G G
Sbjct: 9 KPGDLIEIFRPF-YRHWAIYVGDGYVVHLAPPSEVAGAGA 47
>pdb|2LKT|A Chain A, Solution Structure Of N-Terminal Domain Of Human Tig3 In
2 M Urea
Length = 125
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 14 KPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTG--TVIDVLLVSSGTTR 66
KPGD I +R Y H +YIGD VIH + G G +V VL S+ R
Sbjct: 9 KPGDLIEIFRL-GYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKR 62
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 110 LGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGT 169
LG A G CTL DP I Y G C ++ + CE F CK GL V +G+
Sbjct: 75 LGAAWGSPCTLCQVDP----ICGKGYSRIKGTQCEDI--DECEVFPGVCKNGLCVNTRGS 128
Query: 170 M 170
Sbjct: 129 F 129
>pdb|3QG6|B Chain B, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG6|H Chain H, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG7|H Chain H, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
Length = 213
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 30 HGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPT--PCPTCASNEVGHGVVLSC 87
H + I D TR+G G GT L VSS T P+ P + G V L C
Sbjct: 84 HSVTIEDTGTYFCTREGDYWGQGT---TLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGC 140
Query: 88 L 88
L
Sbjct: 141 L 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,902,076
Number of Sequences: 62578
Number of extensions: 339436
Number of successful extensions: 694
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 7
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)