BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025306
         (255 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O95237|LRAT_HUMAN Lecithin retinol acyltransferase OS=Homo sapiens GN=LRAT PE=1 SV=2
          Length = 230

 Score = 37.0 bits (84), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 24/161 (14%)

Query: 9   DKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLP 68
           +  S   GD +   R ++  H+GIY+GD++V H            + D+LL  + T  + 
Sbjct: 41  ETSSFHRGDVLEVPRTHL-THYGIYLGDNRVAHM-----------MPDILL--ALTDDMG 86

Query: 69  TPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPAL-FLGKARGGTCTLAVADPDD 127
                 ++  +  GV++   +  +    +  F YG +  +  L ++      L     ++
Sbjct: 87  RTQKVVSNKRLILGVIVKVAS--IRVDTVEDFAYGANILVNHLDESLQKKALL-----NE 139

Query: 128 VVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQG 168
            V  RA+ LL  GF  Y++  NNCE F  YC+ G  +  Q 
Sbjct: 140 EVARRAEKLL--GFTPYSLLWNNCEHFVTYCRYGTPISPQS 178


>sp|Q8R3U1|HRSL3_MOUSE HRAS-like suppressor 3 OS=Mus musculus GN=Pla2g16 PE=1 SV=2
          Length = 162

 Score = 36.2 bits (82), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 65/174 (37%), Gaps = 35/174 (20%)

Query: 14  KPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPT 73
           KPGD I  +R  +Y H  IY+GD  VIH     +  G G                    +
Sbjct: 9   KPGDLIEIFRP-MYRHWAIYVGDGYVIHLAPPSEIAGAGAA------------------S 49

Query: 74  CASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRA 133
             S      +V   L C ++G + Y+            K       L    P   +I RA
Sbjct: 50  IMSALTDKAIVKKELLCHVAGKDKYQVN---------NKHDEEYTPL----PLSKIIQRA 96

Query: 134 KYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSIIGGPLAAV 187
           + L+      Y +   NCE F    + G+   DQ  +  + +AV I G  LAA+
Sbjct: 97  ERLVGQEV-LYRLTSENCEHFVNELRYGVPRSDQ--VRDAVKAVGIAGVGLAAL 147


>sp|P53816|HRSL3_HUMAN HRAS-like suppressor 3 OS=Homo sapiens GN=PLA2G16 PE=1 SV=2
          Length = 162

 Score = 33.5 bits (75), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 14 KPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGT 53
          KPGD I  +R + Y H  IY+GD  V+H     +  G G 
Sbjct: 9  KPGDLIEIFRPF-YRHWAIYVGDGYVVHLAPPSEVAGAGA 47


>sp|Q5R611|HRSL3_PONAB HRAS-like suppressor 3 OS=Pongo abelii GN=PLA2G16 PE=2 SV=1
          Length = 162

 Score = 33.1 bits (74), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 14 KPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGT 53
          KPGD I  +R + Y H  IY+GD  V+H     +  G G 
Sbjct: 9  KPGDLIEIFRPF-YRHWAIYVGDGYVVHLAPPSEVAGAGA 47


>sp|P53817|HRSL3_RAT HRAS-like suppressor 3 OS=Rattus norvegicus GN=Pla2g16 PE=2 SV=2
          Length = 160

 Score = 33.1 bits (74), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 14 KPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTG 52
          KPGD I  +R  +Y+H  IY+GD  VIH     +  G G
Sbjct: 7  KPGDLIEIFRP-MYSHWAIYVGDGYVIHLAPPSEIPGAG 44


>sp|Q96KN8|HRSL5_HUMAN Ca(2+)-independent N-acyltransferase OS=Homo sapiens GN=HRASLS5
           PE=2 SV=2
          Length = 279

 Score = 32.7 bits (73), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 10  KESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVL 58
           K   +PGD I  +R   Y H  IY+ DD V+H     +E   G++  + 
Sbjct: 127 KPRPRPGDLIEIFR-IGYEHWAIYVEDDCVVHLAPPSEEFEVGSITSIF 174


>sp|Q03YP0|DNLJ_LEUMM DNA ligase OS=Leuconostoc mesenteroides subsp. mesenteroides
           (strain ATCC 8293 / NCDO 523) GN=ligA PE=3 SV=1
          Length = 680

 Score = 32.3 bits (72), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 29  HHGIYIGDDKVIHFTRQGQ---EVGTGTVIDVLLVSSGTTRLPTPCPTCASN--EVGHGV 83
              I IGD   +H  + G    E+G   +++     S T ++PT CP C SN   +   V
Sbjct: 373 EKDIQIGDTVTLH--KAGDIIPEIGQ-VILEKRPTDSETYQVPTICPACESNLVHIEGEV 429

Query: 84  VLSCLNCFLSG 94
            L C+N F S 
Sbjct: 430 ALRCINPFCSA 440


>sp|Q8D3C8|GSA_WIGBR Glutamate-1-semialdehyde 2,1-aminomutase OS=Wigglesworthia
           glossinidia brevipalpis GN=hemL PE=3 SV=1
          Length = 435

 Score = 32.3 bits (72), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 8   IDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRL 67
            D ++ K  D+I SW A +  H+  YI   K+I ++++G   G  T I++ +    +  +
Sbjct: 48  FDVDNNKYIDYICSWGASILGHNNYYI-TSKIIEYSKKGLNFGLLTEIEIKIARLISKYI 106

Query: 68  PT 69
           P+
Sbjct: 107 PS 108


>sp|B2S0Q2|DNLJ_BORHD DNA ligase OS=Borrelia hermsii (strain DAH) GN=ligA PE=3 SV=1
          Length = 669

 Score = 32.3 bits (72), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 31  GIYIGDDKVIHFTRQGQEV-GTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSCLN 89
           G+ +GD  ++  +R+G  +     VI+ L V  G+ ++P+ CP+C    +  G  L C+N
Sbjct: 364 GLNVGD--IVVISRRGDVIPAVDLVIEKLAV--GSFKIPSNCPSCKMTLIKEGAHLFCVN 419


>sp|Q9UL19|HRSL4_HUMAN Retinoic acid receptor responder protein 3 OS=Homo sapiens
           GN=RARRES3 PE=1 SV=1
          Length = 164

 Score = 32.0 bits (71), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 55/150 (36%), Gaps = 37/150 (24%)

Query: 14  KPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTG--TVIDVLLVSSGTTRLPTPC 71
           KPGD I  +R   Y H  +YIGD  VIH     +  G G  +V  VL  S+   R     
Sbjct: 9   KPGDLIEIFR-LGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKR----- 62

Query: 72  PTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIH 131
                 E    VV  C  C+    +L   EY   P                    +V+I 
Sbjct: 63  ------ERLEDVVGGC--CYRVNNSL-DHEYQPRPV-------------------EVIIS 94

Query: 132 RAKYLLENGFGCYNVFKNNCEDFAIYCKTG 161
            AK ++      Y++   NCE F    + G
Sbjct: 95  SAKEMVGQKMK-YSIVSRNCEHFVTQLRYG 123


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,320,210
Number of Sequences: 539616
Number of extensions: 4271411
Number of successful extensions: 8859
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8857
Number of HSP's gapped (non-prelim): 14
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)