Query 025306
Match_columns 255
No_of_seqs 217 out of 1376
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04970 LRAT: Lecithin retino 100.0 5.7E-33 1.2E-37 225.2 7.6 122 9-163 3-124 (125)
2 PF08405 Calici_PP_N: Viral po 98.5 6.2E-07 1.3E-11 83.6 8.8 42 8-50 4-45 (358)
3 TIGR02219 phage_NlpC_fam putat 98.4 5.2E-07 1.1E-11 74.5 5.9 40 6-45 70-111 (134)
4 PRK10838 spr outer membrane li 98.4 6.8E-07 1.5E-11 78.5 6.1 42 4-45 120-161 (190)
5 PRK11479 hypothetical protein; 98.2 6.3E-06 1.4E-10 76.1 9.4 40 5-44 57-108 (274)
6 PF00877 NLPC_P60: NlpC/P60 fa 98.0 6.3E-06 1.4E-10 64.3 4.0 38 7-44 46-83 (105)
7 PRK13914 invasion associated s 97.9 1E-05 2.3E-10 79.7 5.3 42 4-45 418-459 (481)
8 COG0791 Spr Cell wall-associat 97.8 2.4E-05 5.2E-10 67.6 5.0 42 5-46 131-174 (197)
9 PF05708 DUF830: Orthopoxvirus 97.7 0.00014 3.1E-09 60.2 7.0 95 12-159 1-118 (158)
10 PRK10030 hypothetical protein; 97.0 0.0023 4.9E-08 56.4 7.2 37 7-43 15-66 (197)
11 TIGR02594 conserved hypothetic 96.3 0.012 2.5E-07 48.7 6.3 34 10-44 71-107 (129)
12 PRK11470 hypothetical protein; 96.2 0.014 3E-07 51.9 6.7 34 11-44 7-56 (200)
13 PF05608 DUF778: Protein of un 96.2 0.036 7.8E-07 46.5 8.5 38 123-162 76-113 (136)
14 PF05903 Peptidase_C97: PPPDE 95.5 0.013 2.9E-07 49.4 3.5 30 130-159 87-118 (151)
15 PF05382 Amidase_5: Bacterioph 92.8 0.19 4E-06 42.6 4.7 33 12-44 75-111 (145)
16 KOG0324 Uncharacterized conser 92.5 0.087 1.9E-06 47.3 2.4 35 124-158 84-120 (214)
17 PF06672 DUF1175: Protein of u 87.7 0.95 2.1E-05 40.8 4.8 38 9-46 132-175 (216)
18 COG3863 Uncharacterized distan 86.5 1.7 3.8E-05 38.8 5.7 42 6-47 72-129 (231)
19 PF06940 DUF1287: Domain of un 82.2 3.1 6.8E-05 36.0 5.3 40 9-48 103-148 (164)
20 PF10030 DUF2272: Uncharacteri 79.6 17 0.00036 32.0 9.1 41 4-44 85-143 (183)
21 PF05257 CHAP: CHAP domain; I 78.3 2.3 4.9E-05 33.8 3.1 27 9-35 59-87 (124)
22 KOG3150 Uncharacterized conser 75.9 9.5 0.00021 33.1 6.3 38 123-162 92-129 (182)
23 PF08007 Cupin_4: Cupin superf 61.7 7.3 0.00016 36.4 3.0 30 10-43 177-206 (319)
24 KOG3706 Uncharacterized conser 54.2 6.5 0.00014 39.7 1.3 28 4-33 376-403 (629)
25 COG3234 Uncharacterized protei 48.5 23 0.0005 31.4 3.6 35 9-44 138-172 (215)
26 COG2850 Uncharacterized conser 38.6 13 0.00028 36.3 0.6 29 7-37 177-205 (383)
27 PF03658 Ub-RnfH: RnfH family 37.7 14 0.0003 28.7 0.6 24 1-24 49-73 (84)
28 COG3738 Uncharacterized protei 37.5 66 0.0014 28.4 4.7 38 9-46 137-180 (200)
29 PF05820 DUF845: Baculovirus p 37.0 26 0.00056 28.9 2.0 15 139-153 100-114 (119)
30 TIGR02480 fliN flagellar motor 30.3 63 0.0014 23.9 3.1 31 10-41 26-56 (77)
31 PF01052 SpoA: Surface present 29.8 78 0.0017 22.9 3.5 31 11-42 27-57 (77)
32 PRK10507 bifunctional glutathi 29.7 72 0.0016 33.1 4.4 31 9-39 108-143 (619)
33 PRK11032 hypothetical protein; 28.8 44 0.00095 28.8 2.3 8 69-76 143-150 (160)
34 PF07313 DUF1460: Protein of u 28.6 1E+02 0.0022 27.8 4.6 36 11-46 152-193 (216)
35 PF12037 DUF3523: Domain of un 26.2 47 0.001 31.2 2.1 35 177-212 220-254 (276)
36 PF06887 DUF1265: Protein of u 24.8 56 0.0012 22.8 1.8 36 147-189 3-38 (48)
37 PLN00411 nodulin MtN21 family 23.8 71 0.0015 30.5 2.9 25 188-214 304-328 (358)
38 cd04482 RPA2_OBF_like RPA2_OBF 23.2 1.9E+02 0.0042 22.0 4.8 8 68-75 84-91 (91)
39 PRK06033 hypothetical protein; 20.8 1.3E+02 0.0028 22.9 3.3 32 10-42 25-56 (83)
No 1
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=99.98 E-value=5.7e-33 Score=225.15 Aligned_cols=122 Identities=37% Similarity=0.602 Sum_probs=80.3
Q ss_pred CCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceeeeeeeeeeeeeecCCCCCCCCCCCCCCCCcccceEEeec
Q 025306 9 DKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSCL 88 (255)
Q Consensus 9 ~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~~~s~~d~~~~ss~~~~~~~~c~~c~~~~~~~gVv~~~L 88 (255)
+..+++|||||+++|. .|+|||||+|+++|||+.++++..... ....+++......|+.++|
T Consensus 3 ~~~~~~~GD~I~~~r~-~y~H~gIYvG~~~ViH~~~~~~~~~~~-----------------~~~~~~~~~~~~~V~~~~l 64 (125)
T PF04970_consen 3 DKKRLKPGDHIEVPRG-LYEHWGIYVGDGEVIHFSGPGEISVSN-----------------RSSICGFSKKKAEVKKDSL 64 (125)
T ss_dssp ---S--TT-EEEEEET-TEEEEEEEEETTEEEEEE-S-SSS-SS-----------------SSGGGGT--S-EEEEEEEH
T ss_pred cccCCCCCCEEEEecC-CccEEEEEecCCeEEEecccccccccc-----------------cccccceecCCCEEEEEEh
Confidence 4578999999999995 899999999999999999866422110 1123344445568889999
Q ss_pred eeeeeCCeEEEEecCCChhhhhcccCCCceecccCCChHHHHHHHHHhhhcccccccccccchHHHHHHHhhCCe
Q 025306 89 NCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLL 163 (255)
Q Consensus 89 ~~Fl~G~~l~~~~Y~v~~~~flak~r~gtc~~~~~~p~eeVV~RA~~~L~~G~~~Ynl~~NNCEHFA~~CkTGl~ 163 (255)
++|+.|..+.+.+| ++ ...+|+++++|++||+++|++++ +|||++|||||||+||+||..
T Consensus 65 ~~~~~~~~~~v~~~-----~~---------~~~~~~~~~~iv~rA~~~lg~~~-~Y~l~~nNCEhFa~~c~tG~~ 124 (125)
T PF04970_consen 65 EEFAQGRKVRVNNY-----LD---------HRYKPFPPEEIVERAESRLGKEF-EYNLLFNNCEHFATWCRTGKS 124 (125)
T ss_dssp HHHHTTSEEEE--G-----GG---------GTS--S-HHHHHHHHHHTTT-EE-SS---HHHHHHHHHHHHHS--
T ss_pred HHhcCCCEEEEEec-----CC---------ccCCCCCHHHHHHHHHHHHcCCC-ccCCCcCCHHHHHHHHHcCCC
Confidence 99999888766544 11 23578999999999999998644 999999999999999999974
No 2
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=98.47 E-value=6.2e-07 Score=83.59 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=33.0
Q ss_pred cCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceee
Q 025306 8 IDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVG 50 (255)
Q Consensus 8 v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~ 50 (255)
.+..++.+|++|+++.+ .+.|+|||+|+|+++-...++..++
T Consensus 4 ~~a~EP~~GsilE~~eG-~~yHYaIYi~~G~~lgvh~p~aai~ 45 (358)
T PF08405_consen 4 MPAREPLIGSILEMDEG-DIYHYAIYIGKGLVLGVHSPGAAIS 45 (358)
T ss_pred CCCCCCCCCceEEEecC-eeEEEEEEecCCeEEeecCcchhce
Confidence 46679999999999995 5789999999999975554444333
No 3
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=98.40 E-value=5.2e-07 Score=74.48 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=33.2
Q ss_pred cccCCCCCCCCCEEEEec--CCCCceEEEEEcCCeEEEeeCC
Q 025306 6 NRIDKESLKPGDHIYSWR--AYVYAHHGIYIGDDKVIHFTRQ 45 (255)
Q Consensus 6 ~~v~~~~lkpGD~I~~~r--~~~y~H~GIYvGdg~VIH~~~~ 45 (255)
.+|+.+++||||+|+|.- +....|.|||+|++++||.+..
T Consensus 70 ~~v~~~~~qpGDlvff~~~~~~~~~HvGIy~G~g~~iHa~~~ 111 (134)
T TIGR02219 70 VPVPCDAAQPGDVLVFRWRPGAAAKHAAIAASPTRFIHAYDG 111 (134)
T ss_pred cccchhcCCCCCEEEEeeCCCCCCcEEEEEeCCCcEEEECCC
Confidence 467888999999999963 2236899999999999999863
No 4
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=98.37 E-value=6.8e-07 Score=78.47 Aligned_cols=42 Identities=24% Similarity=0.525 Sum_probs=35.4
Q ss_pred CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCC
Q 025306 4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQ 45 (255)
Q Consensus 4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~ 45 (255)
.+..|+.++++|||+|+|..+....|+|||+|++++||.+..
T Consensus 120 ~g~~V~~~~lqpGDLVfF~~~~~~~HVGIyiGng~~IHAs~~ 161 (190)
T PRK10838 120 MGKSVSRSKLRTGDLVLFRAGSTGRHVGIYIGNNQFVHASTS 161 (190)
T ss_pred cCcCcccCCCCCCcEEEECCCCCCCEEEEEecCCEEEEeCCC
Confidence 457889999999999999753335799999999999999864
No 5
>PRK11479 hypothetical protein; Provisional
Probab=98.23 E-value=6.3e-06 Score=76.12 Aligned_cols=40 Identities=33% Similarity=0.543 Sum_probs=33.8
Q ss_pred CcccCCCCCCCCCEEEEec------------CCCCceEEEEEcCCeEEEeeC
Q 025306 5 SNRIDKESLKPGDHIYSWR------------AYVYAHHGIYIGDDKVIHFTR 44 (255)
Q Consensus 5 ~~~v~~~~lkpGD~I~~~r------------~~~y~H~GIYvGdg~VIH~~~ 44 (255)
+++|+..++||||+|++.. ...++|.|||+|++.|||+++
T Consensus 57 g~~Vs~~~LqpGDLVFfst~t~~S~~Ik~~T~s~~SHVgIylGdg~vIEA~g 108 (274)
T PRK11479 57 IKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIYLGENNVAEATG 108 (274)
T ss_pred CcccChhhCCCCCEEEEecCCccccceecccCCCCcEEEEEecCCeEEEcCC
Confidence 5689999999999999852 124789999999999999864
No 6
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=98.00 E-value=6.3e-06 Score=64.27 Aligned_cols=38 Identities=39% Similarity=0.627 Sum_probs=33.0
Q ss_pred ccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeC
Q 025306 7 RIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTR 44 (255)
Q Consensus 7 ~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~ 44 (255)
.++..+++|||+|++.......|.|||+|++++||...
T Consensus 46 ~~~~~~~~pGDlif~~~~~~~~Hvgiy~g~~~~iha~~ 83 (105)
T PF00877_consen 46 RVPISELQPGDLIFFKGGGGISHVGIYLGDGKFIHASG 83 (105)
T ss_dssp HEEGGG-TTTEEEEEEGTGGEEEEEEEEETTEEEEEET
T ss_pred ccchhcCCcccEEEEeCCccCCEeEEEEeCCeEEEeCC
Confidence 47889999999999988446789999999999999993
No 7
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=97.95 E-value=1e-05 Score=79.70 Aligned_cols=42 Identities=29% Similarity=0.513 Sum_probs=35.1
Q ss_pred CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCC
Q 025306 4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQ 45 (255)
Q Consensus 4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~ 45 (255)
.+.+|+..+++|||+|||..+....|+|||+|+|++||....
T Consensus 418 ~G~~Vs~selqpGDLVFF~~~~~~~HVGIYiGnG~~IHA~~~ 459 (481)
T PRK13914 418 STTRISESQAKPGDLVFFDYGSGISHVGIYVGNGQMINAQDN 459 (481)
T ss_pred cCcccccccCCCCCEEEeCCCCCCCEEEEEeCCCEEEEcCCC
Confidence 356788999999999999753346799999999999997653
No 8
>COG0791 Spr Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]
Probab=97.83 E-value=2.4e-05 Score=67.56 Aligned_cols=42 Identities=31% Similarity=0.622 Sum_probs=36.1
Q ss_pred CcccCCCCCCCCCEEEEec--CCCCceEEEEEcCCeEEEeeCCC
Q 025306 5 SNRIDKESLKPGDHIYSWR--AYVYAHHGIYIGDDKVIHFTRQG 46 (255)
Q Consensus 5 ~~~v~~~~lkpGD~I~~~r--~~~y~H~GIYvGdg~VIH~~~~g 46 (255)
+.+++..+++|||+|+|.. .....|.|||+|+|++||.+..+
T Consensus 131 g~~v~~~~~~~GDlvff~~~~~~~~~Hvgiy~g~g~~iha~~~g 174 (197)
T COG0791 131 GTAVDDSDLQPGDLVFFNTGGGSSANHVGIYLGNGQFIHAAGSG 174 (197)
T ss_pred cCccChhhCCCCCEEEEecCCCCCCCeEEEEecCCeEEecCCCC
Confidence 5678888899999999975 34578999999999999998765
No 9
>PF05708 DUF830: Orthopoxvirus protein of unknown function (DUF830); PDB: 2IF6_B 3KW0_C.
Probab=97.66 E-value=0.00014 Score=60.19 Aligned_cols=95 Identities=27% Similarity=0.374 Sum_probs=54.8
Q ss_pred CCCCCCEEEEecC------------CCCceEEEEEcCC----eEEEeeCCCceeeeeeeeeeeeeecCCCCCCCCCCCCC
Q 025306 12 SLKPGDHIYSWRA------------YVYAHHGIYIGDD----KVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCA 75 (255)
Q Consensus 12 ~lkpGD~I~~~r~------------~~y~H~GIYvGdg----~VIH~~~~g~~~~~~s~~d~~~~ss~~~~~~~~c~~c~ 75 (255)
+||+||+|++... ..|.|.|||++++ .|+|++..
T Consensus 1 ~l~~GDIil~~~~~~~s~~i~~~t~~~~~HvgI~~~~~~~~~~viea~~~------------------------------ 50 (158)
T PF05708_consen 1 KLQTGDIILTRGKSSLSKAIRPVTSSPYSHVGIVIGDEGQEPYVIEATPG------------------------------ 50 (158)
T ss_dssp ---TT-EEEEEE-SCCHHHHHHHHTSS--EEEEEEEETTE-EEEEEEETT------------------------------
T ss_pred CCCCeeEEEEECCchHHHHHHHHhCCCCCEEEEEEecCCCceEEEEeccC------------------------------
Confidence 5899999999541 3689999999987 68888531
Q ss_pred CCCcccceEEeeceeeeeC-CeEEEEecCCChhhhhcccCCCceecccCCChHHHHHHHHHhhhccccccccc------c
Q 025306 76 SNEVGHGVVLSCLNCFLSG-GNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVF------K 148 (255)
Q Consensus 76 ~~~~~~gVv~~~L~~Fl~G-~~l~~~~Y~v~~~~flak~r~gtc~~~~~~p~eeVV~RA~~~L~~G~~~Ynl~------~ 148 (255)
.||....|+.|+.. +...++.+.. .. ...-.+.+++.|++++ | .+|++. .
T Consensus 51 -----~Gv~~~~l~~~~~~~~~~~V~r~~~--~~-------------~~~~~~~~~~~a~~~~--g-~~Y~~~~~~~~~~ 107 (158)
T PF05708_consen 51 -----DGVRLEPLSDFLKRNEKIAVYRLKD--PL-------------SEEQRQKAAEFAKSYI--G-KPYDFNFSLDDDR 107 (158)
T ss_dssp -----TCEEEEECHHHHHCCCEEEEEEECC--GT-------------TCHHHHHHHHHHHCCT--T-S-B-CC-HCCSSS
T ss_pred -----CCeEEeeHHHHhcCCceEEEEEECC--CC-------------CHHHHHHHHHHHHHHc--C-CCccccccCCCCC
Confidence 24566677778774 3333322211 10 1224566778888887 4 478877 3
Q ss_pred cchHHHHHHHh
Q 025306 149 NNCEDFAIYCK 159 (255)
Q Consensus 149 NNCEHFA~~Ck 159 (255)
-.|=.|+..|-
T Consensus 108 ~yCSelV~~~y 118 (158)
T PF05708_consen 108 FYCSELVAEAY 118 (158)
T ss_dssp B-HHHHHHHHH
T ss_pred EEcHHHHHHHH
Confidence 46888888773
No 10
>PRK10030 hypothetical protein; Provisional
Probab=97.01 E-value=0.0023 Score=56.44 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=26.9
Q ss_pred ccCCCCCCCCCEEEEec------------CCCCceEEEEEcC---CeEEEee
Q 025306 7 RIDKESLKPGDHIYSWR------------AYVYAHHGIYIGD---DKVIHFT 43 (255)
Q Consensus 7 ~v~~~~lkpGD~I~~~r------------~~~y~H~GIYvGd---g~VIH~~ 43 (255)
.....++++||+|+..- ...|+|.||+++. -.|+|+.
T Consensus 15 ~~~~~~l~~GDlif~~g~~~~s~aI~~~T~s~~SHVGIi~~~~~~~~ViEAv 66 (197)
T PRK10030 15 PAFAWQPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMIVKRNKKPYVFEAV 66 (197)
T ss_pred hhhhcCCCCCCEEEEeCCCcHhHHHhHhhCCCCceEEEEEEECCcEEEEEec
Confidence 34456899999999843 1368999998863 2478875
No 11
>TIGR02594 conserved hypothetical protein TIGR02594. Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.
Probab=96.30 E-value=0.012 Score=48.67 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=26.1
Q ss_pred CCCCCCCCEEEEecCCCCceEEEEEcCC-e--EEEeeC
Q 025306 10 KESLKPGDHIYSWRAYVYAHHGIYIGDD-K--VIHFTR 44 (255)
Q Consensus 10 ~~~lkpGD~I~~~r~~~y~H~GIYvGdg-~--VIH~~~ 44 (255)
.++++|||+|+|.++ ...|+|||+|++ . .|+.-+
T Consensus 71 v~~p~~GDiv~f~~~-~~~HVGi~~g~~~~~g~i~~lg 107 (129)
T TIGR02594 71 LSKPAYGCIAVKRRG-GGGHVGFVVGKDKQTGTIIVLG 107 (129)
T ss_pred CCCCCccEEEEEECC-CCCEEEEEEeEcCCCCEEEEee
Confidence 347899999999884 367999999854 2 566665
No 12
>PRK11470 hypothetical protein; Provisional
Probab=96.20 E-value=0.014 Score=51.87 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=24.3
Q ss_pred CCCCCCCEEEEec------------CCCCceEEEEEc---CC-eEEEeeC
Q 025306 11 ESLKPGDHIYSWR------------AYVYAHHGIYIG---DD-KVIHFTR 44 (255)
Q Consensus 11 ~~lkpGD~I~~~r------------~~~y~H~GIYvG---dg-~VIH~~~ 44 (255)
.+++.||+||..- +..++|.||.++ ++ .|+|+..
T Consensus 7 ~~l~~GDLvF~~~~~~~~~aI~~aT~s~~sHvGII~~~~~~~~~VlEA~~ 56 (200)
T PRK11470 7 AEYEIGDIVFTCIGAALFGQISAASNCWSNHVGIIIGHNGEDFLVAESRV 56 (200)
T ss_pred CCCCCCCEEEEeCCcchhHHHHhccCCccceEEEEEEEcCCceEEEEecC
Confidence 5899999999952 134579999984 33 4667654
No 13
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=96.16 E-value=0.036 Score=46.54 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=31.2
Q ss_pred CCChHHHHHHHHHhhhcccccccccccchHHHHHHHhhCC
Q 025306 123 ADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGL 162 (255)
Q Consensus 123 ~~p~eeVV~RA~~~L~~G~~~Ynl~~NNCEHFA~~CkTGl 162 (255)
...=|+.|++|...-++ ..||||.+||.+||-.|..-.
T Consensus 76 ~~~wD~Av~~a~~~y~~--r~yNlf~~NCHSfVA~aLN~m 113 (136)
T PF05608_consen 76 AESWDDAVQKASEEYKH--RMYNLFTDNCHSFVANALNRM 113 (136)
T ss_pred HHHHHHHHHHHHHHHhh--CceeeeccCcHHHHHHHHHhc
Confidence 34567788888887744 699999999999999997766
No 14
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=95.53 E-value=0.013 Score=49.40 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=19.5
Q ss_pred HHHHHHhhhccc--ccccccccchHHHHHHHh
Q 025306 130 IHRAKYLLENGF--GCYNVFKNNCEDFAIYCK 159 (255)
Q Consensus 130 V~RA~~~L~~G~--~~Ynl~~NNCEHFA~~Ck 159 (255)
+++....|+..+ ..|||+.+||-||+....
T Consensus 87 ~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~ 118 (151)
T PF05903_consen 87 FEEILRSLSREFTGDSYHLLNRNCNHFSDALC 118 (151)
T ss_dssp HHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcchhhhhhhhHHHHHHH
Confidence 344444444422 599999999999997663
No 15
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=92.84 E-value=0.19 Score=42.64 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=28.4
Q ss_pred CCCCCCEEEEec----CCCCceEEEEEcCCeEEEeeC
Q 025306 12 SLKPGDHIYSWR----AYVYAHHGIYIGDDKVIHFTR 44 (255)
Q Consensus 12 ~lkpGD~I~~~r----~~~y~H~GIYvGdg~VIH~~~ 44 (255)
++|+||++.+.+ ...+-|.||+++..++||..-
T Consensus 75 ~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y 111 (145)
T PF05382_consen 75 NLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNY 111 (145)
T ss_pred cccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecC
Confidence 899999999854 235779999999999999985
No 16
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=0.087 Score=47.27 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=26.2
Q ss_pred CChHHHHHHHHHhhhccc--ccccccccchHHHHHHH
Q 025306 124 DPDDVVIHRAKYLLENGF--GCYNVFKNNCEDFAIYC 158 (255)
Q Consensus 124 ~p~eeVV~RA~~~L~~G~--~~Ynl~~NNCEHFA~~C 158 (255)
+-+++.|++-...|++.+ ..|||+.+||-||..-.
T Consensus 84 d~~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~l 120 (214)
T KOG0324|consen 84 DLTEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNEL 120 (214)
T ss_pred CCCHHHHHHHHHHHHhhcCCceehhhhhccchhHHHH
Confidence 345666777777776533 48999999999998754
No 17
>PF06672 DUF1175: Protein of unknown function (DUF1175); InterPro: IPR009558 This family consists of several hypothetical bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=87.68 E-value=0.95 Score=40.78 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=27.9
Q ss_pred CCCCCCCCCEEEEecC--CCCceEEEEEcC----CeEEEeeCCC
Q 025306 9 DKESLKPGDHIYSWRA--YVYAHHGIYIGD----DKVIHFTRQG 46 (255)
Q Consensus 9 ~~~~lkpGD~I~~~r~--~~y~H~GIYvGd----g~VIH~~~~g 46 (255)
+.++.+|||+||+..+ ....|.-||+|+ .-|-|-.+.+
T Consensus 132 dl~~A~pGDL~Ff~~~d~~~pfHlMI~~g~~~~~~ivYHTG~~g 175 (216)
T PF06672_consen 132 DLEQARPGDLLFFHQGDDQMPFHLMIWVGRDAPPWIVYHTGPEG 175 (216)
T ss_pred hhhhcCCCcEEEecCCCCCcceEEEEEEcCCcceEEEEecCCCC
Confidence 3578899999998762 224499999999 6667765543
No 18
>COG3863 Uncharacterized distant relative of cell wall-associated hydrolases [Function unknown]
Probab=86.46 E-value=1.7 Score=38.84 Aligned_cols=42 Identities=29% Similarity=0.564 Sum_probs=30.7
Q ss_pred cccCCCCCCCCCEEEE-----------ec-----CCCCceEEEEEcCCeEEEeeCCCc
Q 025306 6 NRIDKESLKPGDHIYS-----------WR-----AYVYAHHGIYIGDDKVIHFTRQGQ 47 (255)
Q Consensus 6 ~~v~~~~lkpGD~I~~-----------~r-----~~~y~H~GIYvGdg~VIH~~~~g~ 47 (255)
+..++.-++|||.++. .+ ...|.|.|||.|.++++...++|-
T Consensus 72 ~~~dr~v~~~gd~~~gdyPTr~g~i~~t~~~~~~~~H~gHagmy~~a~~~VEs~psGV 129 (231)
T COG3863 72 NNLDRSVLQPGDILLGDYPTRGGAIWLTDTFGNIVGHWGHAGMYIGAGQMVESWPSGV 129 (231)
T ss_pred hhhhhhhcCCcchhhccCCCCcceEEEEcccccccccccceEEEEcCCcEEeeccCce
Confidence 3456777888888776 12 134568899999999999988753
No 19
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=82.25 E-value=3.1 Score=36.01 Aligned_cols=40 Identities=33% Similarity=0.361 Sum_probs=31.0
Q ss_pred CCCCCCCCCEEEEecCCCCceEEEEEc----CC--eEEEeeCCCce
Q 025306 9 DKESLKPGDHIYSWRAYVYAHHGIYIG----DD--KVIHFTRQGQE 48 (255)
Q Consensus 9 ~~~~lkpGD~I~~~r~~~y~H~GIYvG----dg--~VIH~~~~g~~ 48 (255)
..++-+|||+|.+..+....|.||... +| .|||..+++..
T Consensus 103 ~~~~~q~GDIVtw~l~~~~~HIgIVSd~r~~~G~p~viHNiG~g~~ 148 (164)
T PF06940_consen 103 NPEDWQPGDIVTWRLPGGLPHIGIVSDRRSKDGVPLVIHNIGPGQR 148 (164)
T ss_pred ChhhcCCCCEEEEeCCCCCCeEEEEeCCcCCCCCEEEEEecCCCcc
Confidence 447899999999865445689999875 34 79999987653
No 20
>PF10030 DUF2272: Uncharacterized protein conserved in bacteria (DUF2272); InterPro: IPR019262 This is a domain of unknown function found in proteins of unknown function.
Probab=79.59 E-value=17 Score=32.02 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=30.5
Q ss_pred CCcccCCCCCCCCCEEEEecCC--------------CCceEEEEEc----CCeEEEeeC
Q 025306 4 LSNRIDKESLKPGDHIYSWRAY--------------VYAHHGIYIG----DDKVIHFTR 44 (255)
Q Consensus 4 ~~~~v~~~~lkpGD~I~~~r~~--------------~y~H~GIYvG----dg~VIH~~~ 44 (255)
+..+.....+++||+|...|+. ...|-+|.|. ++..+..-+
T Consensus 85 ~~~~~~~y~P~~GDlIc~~R~~~~~~~~~~~~~~~~~~~HcdIVVa~~~~d~~~v~~IG 143 (183)
T PF10030_consen 85 RARDPAEYKPRPGDLICYDRGRSKTYDFASLPTSGGFPSHCDIVVAVNVVDGRTVTTIG 143 (183)
T ss_pred cccCcCCCCCCCCCEEEecCCCCcccchhhhccCCCCCCceeEEEeeccCCCCEEEEEc
Confidence 4456677899999999998843 4589999887 445666655
No 21
>PF05257 CHAP: CHAP domain; InterPro: IPR007921 The CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain is a region between 110 and 140 amino acids that is found in proteins from bacteria, bacteriophages, archaea and eukaryotes of the Trypanosomidae family. Many of these proteins are uncharacterised, but it has been proposed that they may function mainly in peptidoglycan hydrolysis. The CHAP domain is found in a wide range of protein architectures; it is commonly associated with bacterial type SH3 domains and with several families of amidase domains. It has been suggested that CHAP domain containing proteins utilise a catalytic cysteine residue in a nucleophilic-attack mechanism [, ]. The CHAP domain contains two invariant residues, a cysteine and a histidine. These residues form part of the putative active site of CHAP domain containing proteins. Secondary structure predictions show that the CHAP domain belongs to the alpha + beta structural class, with the N-terminal half largely containing predicted alpha helices and the C-terminal half principally composed of predicted beta strands [, ]. Some proteins known to contain a CHAP domain are listed below: Bacterial and trypanosomal glutathionylspermidine amidases. A variety of bacterial autolysins. A Nocardia aerocolonigenes putative esterase. Streptococcus pneumoniae choline-binding protein D. Methanosarcina mazei protein MM2478, a putative chloride channel. Several phage-encoded peptidoglycan hydrolases. Cysteine peptidases belonging to MEROPS peptidase family C51 (D-alanyl-glycyl endopeptidase, clan CA). ; PDB: 2LRJ_A 2VPM_B 2VOB_B 2VPS_A 2K3A_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B ....
Probab=78.28 E-value=2.3 Score=33.83 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=17.8
Q ss_pred CCCCCCCCCEEEEe-c-CCCCceEEEEEc
Q 025306 9 DKESLKPGDHIYSW-R-AYVYAHHGIYIG 35 (255)
Q Consensus 9 ~~~~lkpGD~I~~~-r-~~~y~H~GIYvG 35 (255)
....|+|||++.+. . ...|-|+||..+
T Consensus 59 ~~~~P~~Gdivv~~~~~~~~~GHVaIV~~ 87 (124)
T PF05257_consen 59 TGSTPQPGDIVVWDSGSGGGYGHVAIVES 87 (124)
T ss_dssp ECS---TTEEEEEEECTTTTT-EEEEEEE
T ss_pred cCcccccceEEEeccCCCCCCCeEEEEEE
Confidence 45789999999993 2 457899999875
No 22
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.92 E-value=9.5 Score=33.14 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCChHHHHHHHHHhhhcccccccccccchHHHHHHHhhCC
Q 025306 123 ADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGL 162 (255)
Q Consensus 123 ~~p~eeVV~RA~~~L~~G~~~Ynl~~NNCEHFA~~CkTGl 162 (255)
+..=|+.|+.|...-+ .+.|||+..||+.|+.-|..-.
T Consensus 92 ~~~wD~Av~~as~~y~--hr~hNi~cdNCHShVA~aLn~m 129 (182)
T KOG3150|consen 92 ARTWDNAVSKASREYK--HRTHNIFCDNCHSHVANALNRM 129 (182)
T ss_pred CchHHHHHHHHHHHhh--hcccceeeccHHHHHHHHHHHh
Confidence 4566788888887774 4799999999999999886655
No 23
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=61.67 E-value=7.3 Score=36.45 Aligned_cols=30 Identities=30% Similarity=0.553 Sum_probs=19.6
Q ss_pred CCCCCCCCEEEEecCCCCceEEEEEcCCeEEEee
Q 025306 10 KESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFT 43 (255)
Q Consensus 10 ~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~ 43 (255)
...|+|||++|++|+ +.|.|.-.+ .=+|++
T Consensus 177 ~~~L~pGD~LYlPrG--~~H~~~~~~--~S~hlt 206 (319)
T PF08007_consen 177 EVVLEPGDVLYLPRG--WWHQAVTTD--PSLHLT 206 (319)
T ss_dssp EEEE-TT-EEEE-TT---EEEEEESS---EEEEE
T ss_pred EEEECCCCEEEECCC--ccCCCCCCC--CceEEE
Confidence 346899999999995 789998777 445665
No 24
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.21 E-value=6.5 Score=39.71 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=22.6
Q ss_pred CCcccCCCCCCCCCEEEEecCCCCceEEEE
Q 025306 4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIY 33 (255)
Q Consensus 4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIY 33 (255)
+|.+|-..-++|||+|||+|| |-|-++-
T Consensus 376 lgePV~e~vle~GDllYfPRG--~IHQA~t 403 (629)
T KOG3706|consen 376 LGEPVHEFVLEPGDLLYFPRG--TIHQADT 403 (629)
T ss_pred hCCchHHhhcCCCcEEEecCc--ceeeccc
Confidence 457777788999999999996 5677764
No 25
>COG3234 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.46 E-value=23 Score=31.44 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=26.0
Q ss_pred CCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeC
Q 025306 9 DKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTR 44 (255)
Q Consensus 9 ~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~ 44 (255)
+..+..|||+++|..+ --+|--|++|.--+-|-.+
T Consensus 138 dvnqAlPGDl~ffdqg-ddqHLMIwmgr~i~YHTG~ 172 (215)
T COG3234 138 DVNQALPGDLIFFDQG-DDQHLMIWMGRYIAYHTGS 172 (215)
T ss_pred hhhhhCCCcEEEEecC-CceEEEEEecceEEEeccC
Confidence 4567789999999984 4579999999544555443
No 26
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=38.63 E-value=13 Score=36.26 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=23.4
Q ss_pred ccCCCCCCCCCEEEEecCCCCceEEEEEcCC
Q 025306 7 RIDKESLKPGDHIYSWRAYVYAHHGIYIGDD 37 (255)
Q Consensus 7 ~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg 37 (255)
.+....+.|||++|++.+ +.|+||-.++.
T Consensus 177 ~~~d~vlepGDiLYiPp~--~~H~gvae~dc 205 (383)
T COG2850 177 PDIDEVLEPGDILYIPPG--FPHYGVAEDDC 205 (383)
T ss_pred chhhhhcCCCceeecCCC--CCcCCcccccc
Confidence 445678899999999984 78999987554
No 27
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=37.72 E-value=14 Score=28.65 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=13.3
Q ss_pred CCCCCcccCC-CCCCCCCEEEEecC
Q 025306 1 MGLLSNRIDK-ESLKPGDHIYSWRA 24 (255)
Q Consensus 1 ~g~~~~~v~~-~~lkpGD~I~~~r~ 24 (255)
+|++|+.+.. ..|+.||-|++.|+
T Consensus 49 vGIfGk~~~~d~~L~~GDRVEIYRP 73 (84)
T PF03658_consen 49 VGIFGKLVKLDTVLRDGDRVEIYRP 73 (84)
T ss_dssp EEEEE-S--TT-B--TT-EEEEE-S
T ss_pred eeeeeeEcCCCCcCCCCCEEEEecc
Confidence 5788888754 57899999999995
No 28
>COG3738 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.55 E-value=66 Score=28.40 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=28.1
Q ss_pred CCCCCCCCCEEEEecCCCCceEEEEEc----CC--eEEEeeCCC
Q 025306 9 DKESLKPGDHIYSWRAYVYAHHGIYIG----DD--KVIHFTRQG 46 (255)
Q Consensus 9 ~~~~lkpGD~I~~~r~~~y~H~GIYvG----dg--~VIH~~~~g 46 (255)
+.+..+|||++.+.-..+-.|.||... +| .|||.-+.|
T Consensus 137 ~~s~y~aGDIvsWRLdngl~HiGv~sd~~~~~g~plViHNIGaG 180 (200)
T COG3738 137 DPSDYQAGDIVSWRLDNGLAHIGVVSDGFTRDGTPLVIHNIGAG 180 (200)
T ss_pred CccccCCCceEEEEcCCCCceeEEEecCCCCCCCeEEEeecCCC
Confidence 456889999998654446789999774 34 588988755
No 29
>PF05820 DUF845: Baculovirus protein of unknown function (DUF845); InterPro: IPR008563 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf81; it is a family of uncharacterised viral proteins.
Probab=36.99 E-value=26 Score=28.89 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=13.2
Q ss_pred cccccccccccchHH
Q 025306 139 NGFGCYNVFKNNCED 153 (255)
Q Consensus 139 ~G~~~Ynl~~NNCEH 153 (255)
+|+..+|+.++|||-
T Consensus 100 egEn~FNiaf~NCEs 114 (119)
T PF05820_consen 100 EGENNFNIAFQNCES 114 (119)
T ss_pred hccccceeeeccchh
Confidence 477899999999995
No 30
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=30.27 E-value=63 Score=23.90 Aligned_cols=31 Identities=13% Similarity=-0.003 Sum_probs=24.1
Q ss_pred CCCCCCCCEEEEecCCCCceEEEEEcCCeEEE
Q 025306 10 KESLKPGDHIYSWRAYVYAHHGIYIGDDKVIH 41 (255)
Q Consensus 10 ~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH 41 (255)
..++++||.|...+. ...+.-||+++-.+..
T Consensus 26 ll~L~~Gdvi~L~~~-~~~~v~l~v~g~~~~~ 56 (77)
T TIGR02480 26 LLKLGEGSVIELDKL-AGEPLDILVNGRLIAR 56 (77)
T ss_pred HhcCCCCCEEEcCCC-CCCcEEEEECCEEEEE
Confidence 457899999999873 4678999998765543
No 31
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=29.83 E-value=78 Score=22.92 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=21.0
Q ss_pred CCCCCCCEEEEecCCCCceEEEEEcCCeEEEe
Q 025306 11 ESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHF 42 (255)
Q Consensus 11 ~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~ 42 (255)
.++++||.|.+... ...+.-+++++-.+.+.
T Consensus 27 ~~L~~Gdvi~l~~~-~~~~v~l~v~g~~~~~g 57 (77)
T PF01052_consen 27 LNLKVGDVIPLDKP-ADEPVELRVNGQPIFRG 57 (77)
T ss_dssp HC--TT-EEEECCE-SSTEEEEEETTEEEEEE
T ss_pred hcCCCCCEEEeCCC-CCCCEEEEECCEEEEEE
Confidence 57899999999883 56899999976554443
No 32
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=29.68 E-value=72 Score=33.15 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=23.6
Q ss_pred CCCCCCCCCEEEEecC---CCCceEEEE--EcCCeE
Q 025306 9 DKESLKPGDHIYSWRA---YVYAHHGIY--IGDDKV 39 (255)
Q Consensus 9 ~~~~lkpGD~I~~~r~---~~y~H~GIY--vGdg~V 39 (255)
+...+++||+|.+.++ ..|-|+||. |+++.|
T Consensus 108 s~~~P~~gdLlI~~~~~~~~p~GHVAVVt~V~~~~V 143 (619)
T PRK10507 108 SPRAPEAGALLIWDKGGEFKDTGHVAIITQLHGNKV 143 (619)
T ss_pred CCCCCCCCcEEEeCCCCCCCCCceEEEEEEEcCCeE
Confidence 5678999999999862 368899985 456654
No 33
>PRK11032 hypothetical protein; Provisional
Probab=28.85 E-value=44 Score=28.84 Aligned_cols=8 Identities=38% Similarity=1.198 Sum_probs=6.5
Q ss_pred CCCCCCCC
Q 025306 69 TPCPTCAS 76 (255)
Q Consensus 69 ~~c~~c~~ 76 (255)
+|||.|+.
T Consensus 143 ~pCp~C~~ 150 (160)
T PRK11032 143 PLCPKCGH 150 (160)
T ss_pred CCCCCCCC
Confidence 48999985
No 34
>PF07313 DUF1460: Protein of unknown function (DUF1460); InterPro: IPR010846 This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.; PDB: 2P1G_B 2IM9_A.
Probab=28.57 E-value=1e+02 Score=27.81 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=24.2
Q ss_pred CCCCCCCEEEEec---CCCCceEEEEEc--CC-eEEEeeCCC
Q 025306 11 ESLKPGDHIYSWR---AYVYAHHGIYIG--DD-KVIHFTRQG 46 (255)
Q Consensus 11 ~~lkpGD~I~~~r---~~~y~H~GIYvG--dg-~VIH~~~~g 46 (255)
..++.||+|-+-. +.-.+|.||.+= ++ .+.|++...
T Consensus 152 ~~i~~GDiI~i~t~~~GLDvsH~Giav~~~~~l~l~hASs~~ 193 (216)
T PF07313_consen 152 SQIKNGDIIAIVTNIKGLDVSHVGIAVWKNDGLHLRHASSLH 193 (216)
T ss_dssp TTS-TT-EEEEEEECTTECEEEEEEEEEETTEEEEEEEETTT
T ss_pred hcCCCCCEEEEEeCCCCCceeeEEEEEEECCeEEEEeCCCCC
Confidence 6789999999965 555789999773 33 346777643
No 35
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=26.18 E-value=47 Score=31.17 Aligned_cols=35 Identities=40% Similarity=0.482 Sum_probs=28.0
Q ss_pred HHHhhhhhhHhhhccccccccchhhHHHHHHHHhhh
Q 025306 177 VSIIGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCA 212 (255)
Q Consensus 177 ~~~~~~~~aa~~s~~l~~~~~~~~g~a~~~~~~y~~ 212 (255)
-+.+|..+.++++-+-++ ++-+.|+.++++|+|.+
T Consensus 220 f~~lg~G~~~lltD~~kl-~~~vgg~T~LA~GvYta 254 (276)
T PF12037_consen 220 FSHLGEGFRALLTDRDKL-TTTVGGLTALAAGVYTA 254 (276)
T ss_pred HHHHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHh
Confidence 345788889999998884 46678999999999974
No 36
>PF06887 DUF1265: Protein of unknown function (DUF1265); InterPro: IPR009676 This family represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be restricted to Caenorhabditis elegans.
Probab=24.85 E-value=56 Score=22.83 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=24.5
Q ss_pred cccchHHHHHHHhhCCeeccCCCccchhhhHHHhhhhhhHhhh
Q 025306 147 FKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSIIGGPLAAVLS 189 (255)
Q Consensus 147 ~~NNCEHFA~~CkTGl~~~~~~g~~~SgQa~~~~~~~~aa~~s 189 (255)
+..|||+|..-|.-= . +..-.|..++..+-.|.+++
T Consensus 3 L~kN~EDl~YV~nmL-i------vA~d~~f~~v~~~C~Atii~ 38 (48)
T PF06887_consen 3 LVKNHEDLMYVCNML-I------VAHDARFGNVQNCCIATIIS 38 (48)
T ss_pred HHHhhhhHHHHHhHh-e------eeccccchHHHHHHHHHHHH
Confidence 457999999888432 2 35566777777776666654
No 37
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=23.83 E-value=71 Score=30.54 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=19.0
Q ss_pred hhccccccccchhhHHHHHHHHhhhhh
Q 025306 188 LSTPLRLVTTNVYGMAATAVTVYCASR 214 (255)
Q Consensus 188 ~s~~l~~~~~~~~g~a~~~~~~y~~~r 214 (255)
+.-++.+ ..+.|.+++..|+|.+.|
T Consensus 304 LgE~lt~--~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 304 LNDSLYL--GCLIGGILITLGFYAVMW 328 (358)
T ss_pred hCCCCcH--HHHHHHHHHHHHHHHHHh
Confidence 4455543 467899999999999886
No 38
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=23.16 E-value=1.9e+02 Score=22.00 Aligned_cols=8 Identities=38% Similarity=1.190 Sum_probs=6.1
Q ss_pred CCCCCCCC
Q 025306 68 PTPCPTCA 75 (255)
Q Consensus 68 ~~~c~~c~ 75 (255)
.+.||.|+
T Consensus 84 np~C~~C~ 91 (91)
T cd04482 84 NPVCPKCG 91 (91)
T ss_pred CCcCCCCC
Confidence 46799885
No 39
>PRK06033 hypothetical protein; Validated
Probab=20.77 E-value=1.3e+02 Score=22.88 Aligned_cols=32 Identities=9% Similarity=-0.129 Sum_probs=23.8
Q ss_pred CCCCCCCCEEEEecCCCCceEEEEEcCCeEEEe
Q 025306 10 KESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHF 42 (255)
Q Consensus 10 ~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~ 42 (255)
.-++++||.|...+. .-...-+|+++-.+...
T Consensus 25 lL~L~~GDVI~L~~~-~~~~v~v~V~~~~~f~g 56 (83)
T PRK06033 25 VLRMGRGAVIPLDAT-EADEVWILANNHPIARG 56 (83)
T ss_pred HhCCCCCCEEEeCCC-CCCcEEEEECCEEEEEE
Confidence 357899999999873 34688899987655443
Done!