Query 025306
Match_columns 255
No_of_seqs 217 out of 1376
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lkt_A Retinoic acid receptor 100.0 6.8E-36 2.3E-40 241.6 9.0 122 8-162 3-124 (125)
2 4dot_A Group XVI phospholipase 100.0 7.9E-34 2.7E-38 235.7 9.6 131 8-179 3-133 (140)
3 4dpz_X HRAS-like suppressor 2; 100.0 8.6E-33 2.9E-37 228.7 8.9 128 9-177 4-131 (137)
4 2k1g_A Lipoprotein SPR; soluti 98.6 2.7E-08 9.1E-13 81.6 4.9 43 4-46 59-101 (135)
5 2jyx_A Lipoprotein SPR; soluti 98.4 2.5E-07 8.7E-12 75.2 6.1 41 4-44 59-99 (136)
6 3pbi_A Invasion protein; pepti 98.3 4.8E-07 1.6E-11 79.4 5.7 46 4-50 150-195 (214)
7 3ne0_A Resuscitation promoting 98.3 5.4E-07 1.9E-11 79.1 4.7 46 4-50 150-195 (214)
8 2hbw_A NLP/P60 protein; NLP/P6 98.2 1.4E-06 4.8E-11 77.2 5.7 42 4-45 152-193 (235)
9 3gt2_A Putative uncharacterize 98.2 1E-06 3.5E-11 72.1 4.1 38 4-42 81-118 (142)
10 2if6_A Hypothetical protein YI 98.2 6.6E-06 2.3E-10 69.6 9.2 36 9-44 1-51 (186)
11 3h41_A NLP/P60 family protein; 98.1 2.9E-06 1E-10 77.5 5.1 46 4-49 241-289 (311)
12 3npf_A Putative dipeptidyl-pep 97.9 7.1E-06 2.4E-10 74.3 5.2 41 4-44 208-258 (306)
13 3kw0_A Cysteine peptidase; str 97.9 4.8E-05 1.6E-09 66.3 8.9 35 10-44 37-86 (214)
14 4hpe_A Putative cell WALL hydr 97.8 1.3E-05 4.4E-10 73.5 4.0 38 5-42 241-282 (308)
15 4fdy_A Similar to lipoprotein, 97.8 1.8E-05 6.3E-10 72.9 4.9 38 5-42 245-286 (313)
16 2wp7_A PPPDE peptidase domain- 95.7 0.0072 2.4E-07 51.1 3.6 35 124-159 79-116 (168)
17 3m1u_A Putative gamma-D-glutam 93.0 0.0087 3E-07 57.3 -2.1 41 4-44 328-381 (434)
18 2p1g_A Putative xylanase; stru 82.0 1.9 6.4E-05 38.4 5.4 36 11-46 170-211 (249)
19 4diq_A Lysine-specific demethy 59.3 5.5 0.00019 38.6 3.2 32 11-44 230-261 (489)
20 1vrb_A Putative asparaginyl hy 55.7 6.2 0.00021 36.0 2.7 31 12-44 221-251 (342)
21 2l34_A TYRO protein tyrosine k 48.2 9.3 0.00032 23.7 1.8 20 196-215 14-33 (33)
22 2xdv_A MYC-induced nuclear ant 47.4 11 0.00038 35.8 3.1 32 11-44 201-233 (442)
23 4h4j_A Hypothetical protein; P 47.2 22 0.00075 31.2 4.8 36 11-46 169-210 (240)
24 1o9y_A HRCQ2; secretory protei 32.7 55 0.0019 23.6 4.3 30 11-41 34-63 (84)
25 3al5_A HTYW5, JMJC domain-cont 30.0 33 0.0011 30.9 3.2 29 11-41 242-270 (338)
26 3a2z_A Bifunctional glutathion 28.6 52 0.0018 27.9 4.0 27 9-35 108-137 (197)
27 3vpi_A Type VI secretion expor 24.3 38 0.0013 28.0 2.2 28 10-37 91-119 (174)
28 1o6a_A Putative flagellar moto 23.6 62 0.0021 24.0 3.2 31 11-42 38-68 (96)
29 4f0w_A Effector TSE1, putative 23.3 40 0.0014 28.1 2.2 28 10-37 105-133 (188)
30 3uep_A YSCQ-C, type III secret 22.8 75 0.0025 23.7 3.5 30 11-41 38-67 (96)
31 2do3_A Transcription elongatio 22.3 2.1E+02 0.0072 20.3 5.6 35 10-44 15-51 (69)
32 2im9_A Hypothetical protein; s 22.2 91 0.0031 28.7 4.6 35 11-45 239-287 (333)
33 2l32_A Small archaeal modifier 21.5 53 0.0018 23.2 2.3 25 6-30 44-70 (74)
34 3d8c_A Hypoxia-inducible facto 21.3 69 0.0024 28.9 3.7 24 11-36 263-286 (349)
No 1
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=100.00 E-value=6.8e-36 Score=241.59 Aligned_cols=122 Identities=26% Similarity=0.353 Sum_probs=91.0
Q ss_pred cCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceeeeeeeeeeeeeecCCCCCCCCCCCCCCCCcccceEEee
Q 025306 8 IDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSC 87 (255)
Q Consensus 8 v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~~~s~~d~~~~ss~~~~~~~~c~~c~~~~~~~gVv~~~ 87 (255)
.+..+|||||||+++|. .|+|||||+|||+|||++++.+....+..+ ..+.......|.+++
T Consensus 3 ~~~~ep~pGDlI~~~r~-~Y~H~gIYvGdg~ViH~~~~~~~~~~~~~~-----------------~~~~~~~~~~V~~~~ 64 (125)
T 2lkt_A 3 SPHQEPKPGDLIEIFRL-GYEHWALYIGDGYVIHLAPPSEYPGAGSSS-----------------VFSVLSNSAEVKRER 64 (125)
T ss_dssp SSSCCCCTTCEEEEECS-SSCEEEEEEETTEEEEEECSBCCSCCCBTT-----------------BSSCCBCCEEEEEEE
T ss_pred CCCCCCCCCCEEEEeCC-CccEEEEEeCCCeEEEEccccccccccccc-----------------eeccccCCceEEEEE
Confidence 35689999999999994 799999999999999999865433322111 011111224566778
Q ss_pred ceeeeeCCeEEEEecCCChhhhhcccCCCceecccCCChHHHHHHHHHhhhcccccccccccchHHHHHHHhhCC
Q 025306 88 LNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGL 162 (255)
Q Consensus 88 L~~Fl~G~~l~~~~Y~v~~~~flak~r~gtc~~~~~~p~eeVV~RA~~~L~~G~~~Ynl~~NNCEHFA~~CkTGl 162 (255)
|++|+.|+..++ ++..+ ..++|+|+++||+||+++|+++ .+|||++|||||||+|||||.
T Consensus 65 l~~~~~g~~~~v-----~~~~d---------~~~~p~~~~~iv~rA~~~lg~~-~~Y~l~~nNCEHFa~~cryG~ 124 (125)
T 2lkt_A 65 LEDVVGGCCYRV-----NNSLD---------HEYQPRPVEVIISSAKEMVGQK-MKYSIVSRNCEHFVTQLRYGK 124 (125)
T ss_dssp HHHHHTTCEEEE-----CCHHH---------HHTCCCCHHHHHHHHHHHTTCE-ECSSCHHHHHHHHHHHHHCSC
T ss_pred HHHhcCCCeEEE-----EEccC---------CCcCCCCHHHHHHHHHHHcCCC-CCcCCCccCHHHHHhhhhccC
Confidence 888876665444 33332 4568999999999999999764 489999999999999999985
No 2
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=100.00 E-value=7.9e-34 Score=235.68 Aligned_cols=131 Identities=27% Similarity=0.350 Sum_probs=83.8
Q ss_pred cCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceeeeeeeeeeeeeecCCCCCCCCCCCCCCCCcccceEEee
Q 025306 8 IDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSC 87 (255)
Q Consensus 8 v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~~~s~~d~~~~ss~~~~~~~~c~~c~~~~~~~gVv~~~ 87 (255)
.++.+++|||+|+++++ .|.|||||+|+|+|||++++++....++.+ ..+.... ...|..+.
T Consensus 3 ~~~~~~~pGDlv~~~~~-~~~H~gIYvG~g~viH~~~~~~~~~~~~~~----~~s~~~~-------------~a~V~~~~ 64 (140)
T 4dot_A 3 APIPEPKPGDLIEIFRP-FYRHWAIYVGDGYVVHLAPPSEVAGAGAAS----VMSALTD-------------KAIVKKEL 64 (140)
T ss_dssp ---CCCCTTCEEEEEET-TEEEEEEEEETTEEEEEECC-----------------------------------CEEEEEE
T ss_pred ccccCCCCCCEEEEeCC-CCCEEEEEeCCCeEEecCCCcccccccccc----ceecccC-------------CceEEEEE
Confidence 46789999999999984 699999999999999999976543322211 0111111 12344556
Q ss_pred ceeeeeCCeEEEEecCCChhhhhcccCCCceecccCCChHHHHHHHHHhhhcccccccccccchHHHHHHHhhCCeeccC
Q 025306 88 LNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQ 167 (255)
Q Consensus 88 L~~Fl~G~~l~~~~Y~v~~~~flak~r~gtc~~~~~~p~eeVV~RA~~~L~~G~~~Ynl~~NNCEHFA~~CkTGl~~~~~ 167 (255)
|++|+.| ..|++ +|.++ ..++|+|+++||+||+++|++ +.+|||++|||||||+||+||.
T Consensus 65 L~d~~~g-~~~~V----nn~~D---------~~y~p~~~~~iv~rA~~~lG~-e~~Y~ll~nNCEHFvt~cr~G~----- 124 (140)
T 4dot_A 65 LYDVAGS-DKYQV----NNKHD---------DKYSPLPCSKIIQRAEELVGQ-EVLYKLTSENCEHFVNELRYGV----- 124 (140)
T ss_dssp HHHHHTT-SEEEE----CCGGG---------GTSCCCCHHHHHHHHHHTTTC-BCSSCCCHHHHHHHHHHHHHCC-----
T ss_pred HHHhcCC-CeEEE----EeccC---------CCcCCCCHHHHHHHHHHHcCC-cccccccccChHHHHHHHhcCC-----
Confidence 6666544 45553 55554 246799999999999999965 4799999999999999998776
Q ss_pred CCccchhhhHHH
Q 025306 168 GTMGQSGQAVSI 179 (255)
Q Consensus 168 ~g~~~SgQa~~~ 179 (255)
.+|.|+..+
T Consensus 125 ---~~S~Qv~~~ 133 (140)
T 4dot_A 125 ---ARSDQVRDL 133 (140)
T ss_dssp ---C--------
T ss_pred ---cccchhhhh
Confidence 589998764
No 3
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=99.98 E-value=8.6e-33 Score=228.71 Aligned_cols=128 Identities=28% Similarity=0.368 Sum_probs=82.1
Q ss_pred CCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceeeeeeeeeeeeeecCCCCCCCCCCCCCCCCcccceEEeec
Q 025306 9 DKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSCL 88 (255)
Q Consensus 9 ~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~~~s~~d~~~~ss~~~~~~~~c~~c~~~~~~~gVv~~~L 88 (255)
.+.+++|||+|+++++ .|.|||||+|||+|||++++++....++.+ ..+..+. ...|..+.|
T Consensus 4 ~~~~~~pGDlv~~~~~-~~~H~gIYvG~g~viH~~~~~~~~~~~~~~----~~s~~~~-------------~a~V~~~~L 65 (137)
T 4dpz_X 4 ARPRPRLGDLIEISRF-GYAHWAIYVGDGYVVHLAPASEIAGAGAAS----VLSALTN-------------KAIVKKELL 65 (137)
T ss_dssp CCCCCCTTCEEEEECS-SSEEEEEEEETTEEEEEEECC----------------TTCC-------------CEEEEEEEH
T ss_pred ccccCCCCCEEEEeCC-CCCEEEEEeCCCeEEeccCccccccccccc----ceecccC-------------CceEEEEEH
Confidence 4689999999999984 789999999999999999876544322211 1111111 123445566
Q ss_pred eeeeeCCeEEEEecCCChhhhhcccCCCceecccCCChHHHHHHHHHhhhcccccccccccchHHHHHHHhhCCeeccCC
Q 025306 89 NCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQG 168 (255)
Q Consensus 89 ~~Fl~G~~l~~~~Y~v~~~~flak~r~gtc~~~~~~p~eeVV~RA~~~L~~G~~~Ynl~~NNCEHFA~~CkTGl~~~~~~ 168 (255)
++|+ ++..|++ +|.++ ..++|+|+++|++||+++|++ +.+|||++|||||||+||+||.
T Consensus 66 ~df~-~g~~~~V----nN~~D---------~~~~p~~~~~iv~rA~~~lG~-~~~Y~ll~nNCEHFvt~cryG~------ 124 (137)
T 4dpz_X 66 SVVA-GGDNYRV----NNKHD---------DRYTPLPSNKIVKRAEELVGQ-ELPYSLTSDNCEHFVNHLRYGV------ 124 (137)
T ss_dssp HHHH-TTSCEEE----CCTTT---------TTSCCCCHHHHHHHHHHHTTC-EEC-----CHHHHHHHHHHHSC------
T ss_pred HHhc-CCCeEEE----EecCC---------CccCCCCHHHHHHHHHHHcCC-CcccCcCccChHHHHHHHhcCC------
Confidence 6665 4456554 45443 235799999999999999965 3699999999999999998876
Q ss_pred CccchhhhH
Q 025306 169 TMGQSGQAV 177 (255)
Q Consensus 169 g~~~SgQa~ 177 (255)
.+|.|.+
T Consensus 125 --~~S~~~~ 131 (137)
T 4dpz_X 125 --SRSDQLE 131 (137)
T ss_dssp --CCC----
T ss_pred --chhcchh
Confidence 5777765
No 4
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=98.62 E-value=2.7e-08 Score=81.58 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=37.1
Q ss_pred CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCC
Q 025306 4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQG 46 (255)
Q Consensus 4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g 46 (255)
.+++|+.++++|||+|+|..+....|+|||+|+|++||++.++
T Consensus 59 ~g~~V~~~~l~pGDLvFf~~~~~~~HVGIyiG~g~~IHA~~~~ 101 (135)
T 2k1g_A 59 MGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHASTSS 101 (135)
T ss_dssp GSEEECGGGCCTTEEEEEEETTTEEEEEEEEETTEEEEEETTT
T ss_pred CCcEecHHHccCCcEEEECCCCCCeEEEEEecCCEEEEECCCC
Confidence 4678999999999999997644568999999999999998744
No 5
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=98.44 E-value=2.5e-07 Score=75.23 Aligned_cols=41 Identities=24% Similarity=0.542 Sum_probs=36.0
Q ss_pred CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeC
Q 025306 4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTR 44 (255)
Q Consensus 4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~ 44 (255)
.+++++.++++|||+|+|..+....|+|||+|+|++||.+.
T Consensus 59 ~g~~v~~~~l~pGDLvff~~~~~~~HVgIy~G~g~~IHa~~ 99 (136)
T 2jyx_A 59 MGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHAST 99 (136)
T ss_dssp GSEECCTTTCCTTEEEEEECSSSSEEEEEEEETTEEEEEET
T ss_pred cCeEcchHhCCCCCEEEECCCCCCCEEEEEEcCCEEEEECC
Confidence 45788999999999999987445789999999999999987
No 6
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=98.33 E-value=4.8e-07 Score=79.41 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=38.5
Q ss_pred CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceee
Q 025306 4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVG 50 (255)
Q Consensus 4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~ 50 (255)
.+++|+.++++|||+|+|..+ ...|+|||+|+|++||....+..+.
T Consensus 150 ~g~~V~~~~lqpGDLVff~~g-~~~HVgIYlG~g~~IHA~~~~~~V~ 195 (214)
T 3pbi_A 150 AGRHVPPAEAKRGDLIFYGPG-GGQHVTLYLGNGQMLEASGSAGKVT 195 (214)
T ss_dssp SSEEECGGGCCTTCEEEESGG-GCSEEEEEEETTEEEEEETTTTEEE
T ss_pred cCeeechhhCCCCCEEEecCC-CCCEEEEEecCCEEEEECCCCCcEE
Confidence 457889999999999998653 4689999999999999998765444
No 7
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=98.27 E-value=5.4e-07 Score=79.13 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=38.0
Q ss_pred CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceee
Q 025306 4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVG 50 (255)
Q Consensus 4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~ 50 (255)
.+++|+.++++|||+|+|..+ ...|+|||+|+|++||.+.++..+.
T Consensus 150 ~g~~V~~~~lqpGDLvFf~~g-~~~HVgIYlG~g~~IHA~~~g~~V~ 195 (214)
T 3ne0_A 150 LGRKIPSSQMRRGDVIFYGPN-GSQHVTIYLGNGQMLEAPDVGLKVR 195 (214)
T ss_dssp SSEEEEGGGCCTTCEEEESGG-GCSEEEEEEETTEEEECCSTTCBSE
T ss_pred cCceechhhCCCCCEEEecCC-CCCEEEEEeCCCEEEEeCCCCCcEE
Confidence 356788899999999998653 4689999999999999987665443
No 8
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=98.20 E-value=1.4e-06 Score=77.25 Aligned_cols=42 Identities=29% Similarity=0.531 Sum_probs=36.3
Q ss_pred CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCC
Q 025306 4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQ 45 (255)
Q Consensus 4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~ 45 (255)
.+++|+.++++|||+|+|.......|+|||+|+|++||.+.+
T Consensus 152 ~g~~v~~~~l~pGDLvff~~~~~~~HVgIy~G~g~~IHa~~~ 193 (235)
T 2hbw_A 152 FTQAITIDELAPGDLVFFGTPVKATHVGLYLGDGCYIHSSGK 193 (235)
T ss_dssp HSEEECGGGCCTTCEEEEECSSCEEEEEEEEETTEEEEEECT
T ss_pred hCccccHhhCCCCCEEEECCCCCCCEEEEEeCCCEEEEECCC
Confidence 356788899999999999864457899999999999999975
No 9
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=98.18 E-value=1e-06 Score=72.10 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=32.7
Q ss_pred CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEe
Q 025306 4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHF 42 (255)
Q Consensus 4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~ 42 (255)
.+.+|+.++++|||+|+|... ...|+|||+|++++||.
T Consensus 81 ~g~~v~~~~~~pGDlvff~~~-~~~HVgIy~G~g~~iha 118 (142)
T 3gt2_A 81 VGQKILPQQARKGDLIFYGPE-GTQSVAMYLGNNQMLEV 118 (142)
T ss_dssp SSEEECGGGCCTTCEEEESGG-GCSEEEEEEETTEEEEE
T ss_pred hCceechhhCCCCCEEEeCCC-CCCEEEEEecCCEEEeC
Confidence 456788999999999998653 36899999999999994
No 10
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=98.18 E-value=6.6e-06 Score=69.58 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=27.8
Q ss_pred CCCCCCCCCEEEEecC------------CCCceEEEEEc-CCe--EEEeeC
Q 025306 9 DKESLKPGDHIYSWRA------------YVYAHHGIYIG-DDK--VIHFTR 44 (255)
Q Consensus 9 ~~~~lkpGD~I~~~r~------------~~y~H~GIYvG-dg~--VIH~~~ 44 (255)
+..+++|||+|++... ..|.|.|||+| +++ |+|+.+
T Consensus 1 ~~~~l~~GDlvf~~~~~~~s~~I~~~t~~~~sHvgI~~~~~~~~~viea~~ 51 (186)
T 2if6_A 1 SLWQPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMLVMRNKKPYVFEAVG 51 (186)
T ss_dssp --CCCCTTCEEEECCCSTTHHHHHHHHTSSCCEEEEEEEETTEEEEEEESS
T ss_pred CcccCCCCCEEEEEcCCchHHHHHHHcCCCCceEEEEEEeCCcEEEEEeCC
Confidence 3578999999999642 25899999999 555 999984
No 11
>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}
Probab=98.06 E-value=2.9e-06 Score=77.49 Aligned_cols=46 Identities=35% Similarity=0.494 Sum_probs=37.6
Q ss_pred CCcccCCCCCCCCCEEEEec---CCCCceEEEEEcCCeEEEeeCCCcee
Q 025306 4 LSNRIDKESLKPGDHIYSWR---AYVYAHHGIYIGDDKVIHFTRQGQEV 49 (255)
Q Consensus 4 ~~~~v~~~~lkpGD~I~~~r---~~~y~H~GIYvGdg~VIH~~~~g~~~ 49 (255)
.+.+|+..+++|||+|+|.. .....|+|||+|+|++||.+.++..+
T Consensus 241 ~g~~v~~~~~~pGDlvff~~~~~~~~~~HVgiy~G~g~~iha~~~~~~V 289 (311)
T 3h41_A 241 NGVAVDKEHLQKGDLIFFAHDQGKGSVHHVAMYIGDGNMIHSPRAERSV 289 (311)
T ss_dssp SSEEECGGGCCTTCEEEEEHHHHTSCEEEEEEEEETTEEEECCCTTSBS
T ss_pred CCEEEcHHHCCCCCEEEEecCCCCCCCcEEEEEEeCCEEEEECCCCCCE
Confidence 46788899999999999974 12467999999999999998755444
No 12
>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A
Probab=97.94 E-value=7.1e-06 Score=74.29 Aligned_cols=41 Identities=32% Similarity=0.541 Sum_probs=33.3
Q ss_pred CCcccCC----CCCCCCCEEEEec------CCCCceEEEEEcCCeEEEeeC
Q 025306 4 LSNRIDK----ESLKPGDHIYSWR------AYVYAHHGIYIGDDKVIHFTR 44 (255)
Q Consensus 4 ~~~~v~~----~~lkpGD~I~~~r------~~~y~H~GIYvGdg~VIH~~~ 44 (255)
.+..++. ++++|||+|+|.. +....|+|||+|+|++||++.
T Consensus 208 ~g~~v~~~~~~~~~~pGDLvff~~~~~~~~~~~~~Hvgiy~g~~~~iha~~ 258 (306)
T 3npf_A 208 VGEHIDIAPDFSNVKRGDLVFFGRKATAERKEGISHVGIYLGNKQFIHALG 258 (306)
T ss_dssp SSEEECCCTTCTTCCTTCEEEEEECCCSSSCCEEEEEEEEEETTEEEEESS
T ss_pred CCcEecccCccccCCCccEEEECCCCccCCCCCCeEEEEEECCCEEEEcCC
Confidence 3455654 8999999999975 234679999999999999985
No 13
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=97.86 E-value=4.8e-05 Score=66.27 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=29.1
Q ss_pred CCCCCCCCEEEEecC------------CCCceEEEEEcCCe---EEEeeC
Q 025306 10 KESLKPGDHIYSWRA------------YVYAHHGIYIGDDK---VIHFTR 44 (255)
Q Consensus 10 ~~~lkpGD~I~~~r~------------~~y~H~GIYvGdg~---VIH~~~ 44 (255)
+.+++|||+|++... ..|+|.|||+|++. |||+..
T Consensus 37 ~~~l~~GDlif~~~~~~~s~~I~~~T~s~~sHvgI~~~~~~~~~vieA~~ 86 (214)
T 3kw0_A 37 INVLKTGDIFLCSGNYLVSKLIKKVSESMFSHTGIIVKWGEHTLIMESVE 86 (214)
T ss_dssp TTTCCTTCEEEEEECSHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEET
T ss_pred HhhCCCCCEEEEeCCCcHHHHHHHhcCCCCcEEEEEEecCCceEEEEecC
Confidence 578999999999631 36899999999886 899975
No 14
>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}
Probab=97.78 E-value=1.3e-05 Score=73.50 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=32.7
Q ss_pred CcccCCCCCCCCCEEEEec----CCCCceEEEEEcCCeEEEe
Q 025306 5 SNRIDKESLKPGDHIYSWR----AYVYAHHGIYIGDDKVIHF 42 (255)
Q Consensus 5 ~~~v~~~~lkpGD~I~~~r----~~~y~H~GIYvGdg~VIH~ 42 (255)
+.+|+.++++|||+|+|.. +....|+|||+|+|++||.
T Consensus 241 g~~v~~~~l~pGDLvff~~~~~~~~~~~HVgIy~G~g~~iha 282 (308)
T 4hpe_A 241 TQHLPLSQAKAGDLVFFHSTYNAGSYVTHVGIYVGNNQMYHA 282 (308)
T ss_dssp SEEECGGGCCTTCEEEEECSSSCSSSEEEEEEECSTTEEEEC
T ss_pred CeeechhhCCCCCEEEEcCCCCCCCCccEEEEEEcCCEEEEe
Confidence 5678899999999999964 2236799999999999999
No 15
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}
Probab=97.77 E-value=1.8e-05 Score=72.89 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=32.6
Q ss_pred CcccCCCCCCCCCEEEEec----CCCCceEEEEEcCCeEEEe
Q 025306 5 SNRIDKESLKPGDHIYSWR----AYVYAHHGIYIGDDKVIHF 42 (255)
Q Consensus 5 ~~~v~~~~lkpGD~I~~~r----~~~y~H~GIYvGdg~VIH~ 42 (255)
+.+|+..+++|||+|+|.. +....|+|||+|+|++||.
T Consensus 245 g~~V~~~~lqpGDLvff~~~~~~g~~~~HVGIYlG~g~~IHA 286 (313)
T 4fdy_A 245 TQEISMEEAQAGDLIFFHSTYNAGTYVTHVAIYLEGNRFYHA 286 (313)
T ss_dssp SEEECTTTCCTTCEEEESSSSCCSSSCCEEEEEEETTEEEES
T ss_pred CceechhhCCCCCEEEEecCCCCCCCCcEEEEEecCCEEEEe
Confidence 5678899999999999963 2236799999999999999
No 16
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=95.68 E-value=0.0072 Score=51.11 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHhhhcc-c--ccccccccchHHHHHHHh
Q 025306 124 DPDDVVIHRAKYLLENG-F--GCYNVFKNNCEDFAIYCK 159 (255)
Q Consensus 124 ~p~eeVV~RA~~~L~~G-~--~~Ynl~~NNCEHFA~~Ck 159 (255)
.+.+++ ++....|+.. | ..|||+.+||-||+...-
T Consensus 79 ~~~~~~-~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~ 116 (168)
T 2wp7_A 79 VTEEIF-LEYLSSLGESLFRGEAYNLFEHNCNTFSNEVA 116 (168)
T ss_dssp CCHHHH-HHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHH
T ss_pred CCHHHH-HHHHHHhhhccCCcccCchhhhccchhHHHHH
Confidence 355554 3333333332 3 599999999999998764
No 17
>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopept; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Desulfovibrio vulgaris}
Probab=93.04 E-value=0.0087 Score=57.29 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCcccCCCCCCCCC--------EEEEec-CCCCceEEEEEcCC----eEEEeeC
Q 025306 4 LSNRIDKESLKPGD--------HIYSWR-AYVYAHHGIYIGDD----KVIHFTR 44 (255)
Q Consensus 4 ~~~~v~~~~lkpGD--------~I~~~r-~~~y~H~GIYvGdg----~VIH~~~ 44 (255)
.|..|+.++++||| +++|.. .+...|+|||+|++ .+||...
T Consensus 328 ~g~~v~~~~l~pGD~~~~i~~~lvfF~~~~~~~gHVgIYiG~~~g~~~~ih~~~ 381 (434)
T 3m1u_A 328 AGRYVDIAKLDADDKEARIVAEGVPFMTLLWLRGHITLYLGLHEGQAAMFHNMW 381 (434)
T ss_dssp TSEEEECTTSCHHHHHHHHHHHCCTTSEEEEETTEEEEEEEEETTEEEEEEEEE
T ss_pred cCeecCHHHCCCCcccccccccccccccCCCCCCeEEEEecCCCCcEEEEEeCC
Confidence 46788999999999 666533 12235999999975 5788864
No 18
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=82.03 E-value=1.9 Score=38.42 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=27.5
Q ss_pred CCCCCCCEEEEec---CCCCceEEEEEc-CC--eEEEeeCCC
Q 025306 11 ESLKPGDHIYSWR---AYVYAHHGIYIG-DD--KVIHFTRQG 46 (255)
Q Consensus 11 ~~lkpGD~I~~~r---~~~y~H~GIYvG-dg--~VIH~~~~g 46 (255)
.+++.||+|.+-. +.-.+|.||++- +| .++|++...
T Consensus 170 ~~l~~GDiI~i~t~~~GLDVsHvGi~i~~~~~l~f~hASs~~ 211 (249)
T 2p1g_A 170 PWIKNGDIIALTTNTPGLDVSHMGIAIYIKGQLHLLHASSKE 211 (249)
T ss_dssp TTSCTTCEEEEEECSTTCSEEEEEEEEEETTEEEEEEEETTT
T ss_pred hcCCCCCEEEEEeCCCCCceeEEEEEEEECCeEEEEEcCCCC
Confidence 6799999999976 444689999994 33 568888744
No 19
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=59.28 E-value=5.5 Score=38.60 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=27.4
Q ss_pred CCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeC
Q 025306 11 ESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTR 44 (255)
Q Consensus 11 ~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~ 44 (255)
..++|||.+|++++ +.|++...++..=+|++-
T Consensus 230 ~~L~pGDvLYiP~g--~~H~~~s~~~~~SlhlTi 261 (489)
T 4diq_A 230 TVLEPGDLLYFPRG--FIHQAECQDGVHSLHLTL 261 (489)
T ss_dssp EEECTTCEEEECTT--CEEEEEBCSSCCEEEEEE
T ss_pred EEECCCCEEEECCC--CceEEEecCCCceEEEee
Confidence 46899999999995 789999998777788874
No 20
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=55.67 E-value=6.2 Score=35.97 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=24.2
Q ss_pred CCCCCCEEEEecCCCCceEEEEEcCCeEEEeeC
Q 025306 12 SLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTR 44 (255)
Q Consensus 12 ~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~ 44 (255)
.++|||.+|++++ +.|++...++..=+|++-
T Consensus 221 ~L~pGD~LyiP~g--wwH~v~s~~~~~slsvsi 251 (342)
T 1vrb_A 221 NLTPGTMLYLPRG--LWHSTKSDQATLALNITF 251 (342)
T ss_dssp EECTTCEEEECTT--CEEEEECSSCEEEEEEEE
T ss_pred EECCCcEEEeCCC--ccEEEEECCCCceEEEEE
Confidence 6799999999995 789999886545566653
No 21
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=48.19 E-value=9.3 Score=23.66 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=15.7
Q ss_pred ccchhhHHHHHHHHhhhhhh
Q 025306 196 TTNVYGMAATAVTVYCASRY 215 (255)
Q Consensus 196 ~~~~~g~a~~~~~~y~~~r~ 215 (255)
..++.+.++++.++|+.+|.
T Consensus 14 vgdi~~t~~i~~~vy~~~r~ 33 (33)
T 2l34_A 14 VGDLVLTVLIALAVYFLGRL 33 (33)
T ss_dssp HHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhheecC
Confidence 45667788899999999984
No 22
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=47.41 E-value=11 Score=35.78 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=24.9
Q ss_pred CCCCCCCEEEEecCCCCceEEEEEcC-CeEEEeeC
Q 025306 11 ESLKPGDHIYSWRAYVYAHHGIYIGD-DKVIHFTR 44 (255)
Q Consensus 11 ~~lkpGD~I~~~r~~~y~H~GIYvGd-g~VIH~~~ 44 (255)
..|+|||.+|++++ +.|++.+.++ ..=+|++-
T Consensus 201 ~~L~pGD~LYiP~g--~~H~~~s~~~~~~SlhlT~ 233 (442)
T 2xdv_A 201 FMLKPGDLLYFPRG--TIHQADTPAGLAHSTHVTI 233 (442)
T ss_dssp EEECTTCEEEECTT--CEEEEECCSSSCCEEEEEE
T ss_pred EEECCCcEEEECCC--ceEEEEecCCCcceeeccc
Confidence 46899999999995 7899999862 44577653
No 23
>4h4j_A Hypothetical protein; PF07313 family protein, DUF 1460, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.15A {Bacteroides uniformis}
Probab=47.25 E-value=22 Score=31.16 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=27.4
Q ss_pred CCCCCCCEEEEec---CCCCceEEEEEc-CC--eEEEeeCCC
Q 025306 11 ESLKPGDHIYSWR---AYVYAHHGIYIG-DD--KVIHFTRQG 46 (255)
Q Consensus 11 ~~lkpGD~I~~~r---~~~y~H~GIYvG-dg--~VIH~~~~g 46 (255)
..++.||+|-+-. +.-.+|.||.+= +| .++|++...
T Consensus 169 ~~l~~GDiIai~t~~~GLDvsH~Giai~~~~~l~l~hASS~~ 210 (240)
T 4h4j_A 169 PWIKDGDIIAITTNTPGLDVAHMGIAFYADNKLLLVHASSTD 210 (240)
T ss_dssp TTSCTTCEEEEEECSTTCSEEEEEEEEEETTEEEEEEEETTT
T ss_pred hhCCCCcEEEEEecCCCceEEEEEEEEEECCeEEEEEcCCCC
Confidence 5799999999976 556799999884 33 468888744
No 24
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=32.71 E-value=55 Score=23.63 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=23.7
Q ss_pred CCCCCCCEEEEecCCCCceEEEEEcCCeEEE
Q 025306 11 ESLKPGDHIYSWRAYVYAHHGIYIGDDKVIH 41 (255)
Q Consensus 11 ~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH 41 (255)
-++++||.|...+ ....+.-||+++-.+.+
T Consensus 34 l~L~~GdVi~Ld~-~~~e~v~i~vng~~~~~ 63 (84)
T 1o9y_A 34 RRLDAGTILEVTG-ISPGHATLCHGEQVVAE 63 (84)
T ss_dssp HTCCTTCEEEECS-SCTTEEEEEETTEEEEE
T ss_pred hcCCCCCEEEeCC-CCCCCEEEEECCEEEEE
Confidence 4789999999988 34689999998755544
No 25
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=29.96 E-value=33 Score=30.87 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=22.1
Q ss_pred CCCCCCCEEEEecCCCCceEEEEEcCCeEEE
Q 025306 11 ESLKPGDHIYSWRAYVYAHHGIYIGDDKVIH 41 (255)
Q Consensus 11 ~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH 41 (255)
..++|||.||++.+ ..|+...++.+.-|.
T Consensus 242 ~~L~pGD~LyiP~g--WwH~v~~l~~sisvn 270 (338)
T 3al5_A 242 CSLEAGDVLFIPAL--WFHNVISEEFGVGVN 270 (338)
T ss_dssp EEECTTCEEEECTT--CEEEEEESSCEEEEE
T ss_pred EEECCCCEEEECCC--CeEEEeeCCCEEEEE
Confidence 35799999999985 689998886554343
No 26
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase, ATP-binding, hydrolase, ligase, multifunctional nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A 3a2y_A*
Probab=28.63 E-value=52 Score=27.94 Aligned_cols=27 Identities=11% Similarity=-0.013 Sum_probs=21.2
Q ss_pred CCCCCCCCCEEEEecC---CCCceEEEEEc
Q 025306 9 DKESLKPGDHIYSWRA---YVYAHHGIYIG 35 (255)
Q Consensus 9 ~~~~lkpGD~I~~~r~---~~y~H~GIYvG 35 (255)
+...+++||+|.+..+ ..|-|+||...
T Consensus 108 ~~~~P~~Gdl~V~~~g~~~~~yGHVAvV~~ 137 (197)
T 3a2z_A 108 SPRAPVAGALLIWDKGGEFKDTGHVAIITQ 137 (197)
T ss_dssp CSSCCCTTCEEEECSCGGGTTTCEEEEEEE
T ss_pred CCCCCCCCeEEEECCCCcCCCCccEEEEEE
Confidence 3578999999998763 35889999764
No 27
>3vpi_A Type VI secretion exported 1; hydrolase; HET: MSE; 1.50A {Pseudomonas aeruginosa} PDB: 3vpj_A
Probab=24.25 E-value=38 Score=28.04 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=22.1
Q ss_pred CCCCCCCCEEEEec-CCCCceEEEEEcCC
Q 025306 10 KESLKPGDHIYSWR-AYVYAHHGIYIGDD 37 (255)
Q Consensus 10 ~~~lkpGD~I~~~r-~~~y~H~GIYvGdg 37 (255)
.++.+|||+|.... ...+-|++||+|+-
T Consensus 91 ~~~A~~GyLVi~glK~~~hGHVvIvigGp 119 (174)
T 3vpi_A 91 AQKAAQGFLVIAGLKGRTYGHVAVVISGP 119 (174)
T ss_dssp HHHHHTTCCEEEEECCSSCCEEEEECCSC
T ss_pred HHhcCCCCeEEeecccCCCceEEEEeCCc
Confidence 45668999999875 45678999999864
No 28
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=23.64 E-value=62 Score=23.96 Aligned_cols=31 Identities=10% Similarity=-0.061 Sum_probs=23.7
Q ss_pred CCCCCCCEEEEecCCCCceEEEEEcCCeEEEe
Q 025306 11 ESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHF 42 (255)
Q Consensus 11 ~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~ 42 (255)
-++++||.|...+. .....-||+++-.+.+-
T Consensus 38 l~L~~GdVI~Ld~~-~~~~v~v~v~g~~i~~G 68 (96)
T 1o6a_A 38 LEMIHGSIIELDKL-TGEPVDILVNGKLIARG 68 (96)
T ss_dssp HHCCTTCEEEEEEE-TTCCEEEEETTEEEEEE
T ss_pred hCCCCCCEEEeCCC-CCCcEEEEECCEEEEEE
Confidence 46899999999872 45789999987655443
No 29
>4f0w_A Effector TSE1, putative uncharacterized protein; NLPC/P60 domain, hydrolase; 1.24A {Pseudomonas aeruginosa} PDB: 4f0v_A 4f4m_A 4fge_A 4fgd_A 4fgi_A 4eq8_A* 4eob_A* 4eqa_A
Probab=23.33 E-value=40 Score=28.12 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=22.1
Q ss_pred CCCCCCCCEEEEec-CCCCceEEEEEcCC
Q 025306 10 KESLKPGDHIYSWR-AYVYAHHGIYIGDD 37 (255)
Q Consensus 10 ~~~lkpGD~I~~~r-~~~y~H~GIYvGdg 37 (255)
.++.+|||+|.... ...+-|++||+++-
T Consensus 105 y~~A~~GyLViyglK~~~hGHVaIvigGp 133 (188)
T 4f0w_A 105 AQKAAQGFLVIAGLKGRTYGHVAVVISGP 133 (188)
T ss_dssp HHHHHTTCCEEEEECCSSCCEEEEECSSC
T ss_pred HHhcCCCCeEEeecccCCCceEEEEeCCc
Confidence 44568999999875 45678999999864
No 30
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=22.81 E-value=75 Score=23.69 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=23.6
Q ss_pred CCCCCCCEEEEecCCCCceEEEEEcCCeEEE
Q 025306 11 ESLKPGDHIYSWRAYVYAHHGIYIGDDKVIH 41 (255)
Q Consensus 11 ~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH 41 (255)
-++++||.|...+. .....-||+++-.+.+
T Consensus 38 l~L~~GdVI~Ld~~-~~~~v~i~vng~~i~~ 67 (96)
T 3uep_A 38 TSLEPGSLIDLTTP-VDGEVRLLANGRLLGH 67 (96)
T ss_dssp HHCCTTCEEEEEEE-SSCEEEEEETTEEEEE
T ss_pred hcCCCCCEEEeCCC-CCCcEEEEECCEEEEE
Confidence 46899999999983 4689999998755543
No 31
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=22.33 E-value=2.1e+02 Score=20.33 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=22.4
Q ss_pred CCCCCCCCEEEEecCCCCceEEEEEc--CCeEEEeeC
Q 025306 10 KESLKPGDHIYSWRAYVYAHHGIYIG--DDKVIHFTR 44 (255)
Q Consensus 10 ~~~lkpGD~I~~~r~~~y~H~GIYvG--dg~VIH~~~ 44 (255)
++.+++|||+.+-.|..-.-.|+.+- ++.|+=++.
T Consensus 15 rK~F~~GDHVkVi~G~~~getGlVV~v~~d~v~v~SD 51 (69)
T 2do3_A 15 RKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSD 51 (69)
T ss_dssp CSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEES
T ss_pred eeeccCCCeEEEeccEEcCceEEEEEEeCCEEEEEeC
Confidence 46789999999987532336666653 444444443
No 32
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13
Probab=22.20 E-value=91 Score=28.68 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=25.2
Q ss_pred CCCCCCCEEEEec-----------CCCCceEEEEEc-CC--eEEEeeCC
Q 025306 11 ESLKPGDHIYSWR-----------AYVYAHHGIYIG-DD--KVIHFTRQ 45 (255)
Q Consensus 11 ~~lkpGD~I~~~r-----------~~~y~H~GIYvG-dg--~VIH~~~~ 45 (255)
..++.||+|.+-+ +.-.+|.||.+- +| .+.|++..
T Consensus 239 ~~I~~GDII~I~t~~~~l~~~ig~GLDVsHvGiai~~~g~l~lrhASS~ 287 (333)
T 2im9_A 239 SQIPNGAVIEIIRPNWDLRQQIGTELDISHLGFAIWINNELFFRQASSQ 287 (333)
T ss_dssp TTSCTTCEEEEEEEEECCHHHHSSCEEEEEEEEEEEETTEEEEEEEETT
T ss_pred hhCCCCCEEEEEecCccccccccCCCcceEEEEEEEECCeEEEEecCCC
Confidence 6799999999965 233579999874 34 34677763
No 33
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=21.46 E-value=53 Score=23.23 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=15.7
Q ss_pred cccCCCCCCCCCEEEEec--CCCCceE
Q 025306 6 NRIDKESLKPGDHIYSWR--AYVYAHH 30 (255)
Q Consensus 6 ~~v~~~~lkpGD~I~~~r--~~~y~H~ 30 (255)
+.++..++..||.|++-+ +++..||
T Consensus 44 ~~v~~d~~l~GD~VeIv~~V~G~~~~~ 70 (74)
T 2l32_A 44 RPVPEDQSVEVDRVKVLRLIKGGLEHH 70 (74)
T ss_dssp CCCCTTSSSCCCCEEECSSCSCC----
T ss_pred EECCHHHCCCCCEEEEEEeeccccccc
Confidence 456777777899999987 3344443
No 34
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=21.34 E-value=69 Score=28.91 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.8
Q ss_pred CCCCCCCEEEEecCCCCceEEEEEcC
Q 025306 11 ESLKPGDHIYSWRAYVYAHHGIYIGD 36 (255)
Q Consensus 11 ~~lkpGD~I~~~r~~~y~H~GIYvGd 36 (255)
..++|||.||++.+ ..|+...+++
T Consensus 263 ~~l~pGD~LyiP~g--WwH~V~~l~d 286 (349)
T 3d8c_A 263 TVVGPGDVLYIPMY--WWHHIESLLN 286 (349)
T ss_dssp EEECTTCEEEECTT--CEEEEEECTT
T ss_pred EEECCCCEEEECCC--CcEEEEEcCC
Confidence 35799999999985 7899988874
Done!